Citrus Sinensis ID: 039931
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIX3 | 747 | Pentatricopeptide repeat- | yes | no | 0.749 | 0.785 | 0.280 | 6e-77 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.753 | 0.745 | 0.295 | 5e-74 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.754 | 0.810 | 0.283 | 7e-73 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.725 | 0.626 | 0.292 | 2e-71 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.717 | 0.892 | 0.294 | 3e-69 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.717 | 0.889 | 0.289 | 3e-68 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.660 | 0.821 | 0.306 | 6e-68 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.712 | 0.885 | 0.286 | 6e-68 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.717 | 0.886 | 0.287 | 2e-67 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.780 | 0.557 | 0.278 | 4e-67 |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 289 bits (740), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 173/617 (28%), Positives = 303/617 (49%), Gaps = 30/617 (4%)
Query: 50 TIRSCCIAAHIFAAEDL----RLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFR 105
T+R CI HI L ++LA+DV + A + + + + + L S
Sbjct: 79 TLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASL---VFKSLQETYDLCYSTSS 135
Query: 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRD 164
V D ++ Y R+ + + + I++ + G MP + + + +R + +F++
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 165 MIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQ 224
M+ P+ +T+N LI GFC G I + +L M C+ + YN LI+ YC
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC---- 251
Query: 225 TSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAP 284
L K G + + +GL PN++ YN ++NG + + + + + EM R +
Sbjct: 252 ---KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL 308
Query: 285 DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFF 344
D VT+N ++ G+CK G + ++ GL P+ Y + +C AG ++ AMEF
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL 368
Query: 345 EDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404
+ M +G+ P+ + +++ +S+ G A+ + M+ G +PS T ++L+ G C
Sbjct: 369 DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVT 428
Query: 405 GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAF 464
G++ +A +L M EKG + V+++ +L G+ R D+ A + E+ + I PD + +
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Query: 465 SAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ 524
S+ I G + EA ++ EM R+G P+ F Y +LI +C G L +AL+L EM +
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE 548
Query: 525 KGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI----------- 573
KG+LPD T++++ING KQ R + A + ++ VP VTY+TLI
Sbjct: 549 KGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSV 608
Query: 574 ----GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629
G+C + AD++ M PD T YNI +HG+C + +A + E+V
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVK 668
Query: 630 AGIVPNTVTYNTLMNGV 646
+G + +TVT L+ +
Sbjct: 669 SGFLLHTVTVIALVKAL 685
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 184/623 (29%), Positives = 302/623 (48%), Gaps = 33/623 (5%)
Query: 129 RMREVG---IMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185
RM G + P IL R G + ++I G R F L+ G C
Sbjct: 74 RMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC 133
Query: 186 RNGCIRIGESL---LHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMI 242
+ R +++ L M + C+ + F+YNIL+ C ++ AL + M+
Sbjct: 134 ADK--RTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEAL-------ELLHMM 184
Query: 243 QEE---GLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKY 299
++ G P+VV Y ++NG+ K D D+A Y EM R I PD VT+N I++ CK
Sbjct: 185 ADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA 244
Query: 300 GGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAF 359
M+ +L + +G++P+C Y+ + G C +G+ EA+ F + M G+ P + +
Sbjct: 245 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY 304
Query: 360 NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIE 419
+ ++ + G A + + M + GL P T +LL G KG L E LL M+
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364
Query: 420 KGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDE 479
G + F++L+ Y + G + A +++++ ++ + P+AV + A I L K+G V++
Sbjct: 365 NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424
Query: 480 AYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIIN 539
A F +M G P N YNSLI G C K A +L EM +G+ + FN II+
Sbjct: 425 AMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484
Query: 540 GFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP 599
CK+GR+ + F M R G+ P+++TYNTLI GYC A + A +L++ M + GL P
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544
Query: 600 DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAA 659
+ TY+ ++GYC I +M A ++ E+ S+G+ P+ +TYN ++ G + AA
Sbjct: 545 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQG----LFQTRRTAAA 600
Query: 660 KLLKMAFVPN-----VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714
K L + + + T N++L CK + + L Q L + + ++ IM A
Sbjct: 601 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 660
Query: 715 YHNIQENAEFFQETSEKSLFLDF 737
+ N E K LF+ F
Sbjct: 661 LLKVGRNDE------AKDLFVAF 677
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (704), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 171/604 (28%), Positives = 299/604 (49%), Gaps = 13/604 (2%)
Query: 70 AQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYR 129
AQ + +I R G R + +V + F GS+ V D L+ Y++ E E
Sbjct: 132 AQSCLLRMIRRSGVSRLE-IVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTL 190
Query: 130 MREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189
+R G S A L SL+R+G W +++++ G + YT N ++ C++G
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 190 I-RIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS 248
+ ++G L V K + D YN LI+AY +G A + + + +G S
Sbjct: 251 MEKVGTFLSQVQEKGV-YPDIVTYNTLISAYSSKGLMEEAFE-------LMNAMPGKGFS 302
Query: 249 PNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRL 308
P V YN ++NG K ++A ++ EM ++PD+ T+ ++ CK G + + +++
Sbjct: 303 PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKV 362
Query: 309 LRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR 368
D+ ++P+ + ++ +G LD+A+ +F + E G+ P + +I Y R
Sbjct: 363 FSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCR 422
Query: 369 AGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVA 428
G+ A M Q G T +++L GLCK+ L EA L +M E+ +
Sbjct: 423 KGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYT 482
Query: 429 FTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS 488
T+L+DG+ ++G+L A L+ ++ ++I D V ++ ++G K G +D A ++ +M
Sbjct: 483 LTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV 542
Query: 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMK 548
+P +Y+ L+ C++G L EA ++ EM K + P N +I G+C+ G
Sbjct: 543 SKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNAS 602
Query: 549 PAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKM--YAGGLDPDITTYNI 606
M G VPD ++YNTLI G+ + ++ +A LV KM GGL PD+ TYN
Sbjct: 603 DGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNS 662
Query: 607 RMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG-VCCDILDRAIIIAAKLLKMA 665
+HG+C +M +A ++L +++ G+ P+ TY ++NG V D L A I ++L+
Sbjct: 663 ILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722
Query: 666 FVPN 669
F P+
Sbjct: 723 FSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 182/623 (29%), Positives = 295/623 (47%), Gaps = 55/623 (8%)
Query: 61 FAAEDLRLLAQDVVTWVISRIGAGRSKH-------MVEFMCDDFHLFGSDFRVLDALLHG 113
A +DL+ DVVT+ G + + M E +C F + +L+ G
Sbjct: 288 LAGKDLK---PDVVTYCTLVYGLCKVQEFEIGLEMMDEMLC---LRFSPSEAAVSSLVEG 341
Query: 114 YLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS 173
+ E + ++ R+ + G+ P+ L SL + + LF M +G RP+
Sbjct: 342 LRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPN 401
Query: 174 NYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCG 233
+ T++ LI FCR G + S L M + YN LIN +C G S A G
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEG--- 458
Query: 234 AGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIV 293
+ +MI ++ L P VV Y +L+ GY I++A LY EM + IAP TF ++
Sbjct: 459 ---FMAEMINKK-LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLL 514
Query: 294 SGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGIS 353
SG + G + D +L +++ + PN Y++ + G C G + +A EF ++M EKGI
Sbjct: 515 SGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIV 574
Query: 354 PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413
P +++ +I G A +H+ + + LL G C++G+L EA +
Sbjct: 575 PDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSV 634
Query: 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473
+M+++G ++ V + VL+DG + D L E++ R + PD V +++ I+ SK
Sbjct: 635 CQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSK 694
Query: 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEA------------------ 515
G EA+G++ M G VPN Y ++I G C G +NEA
Sbjct: 695 TGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVT 754
Query: 516 --------LKLEREMRQ---------KGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMY 558
K E +M++ KGLL + T+N++I GFC+QGR++ A + M
Sbjct: 755 YGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMI 814
Query: 559 RTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMN 618
G+ PD +TY T+I C+ D+ +A EL N M G+ PD YN +HG C +M
Sbjct: 815 GDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874
Query: 619 QAAMMLDELVSAGIVPNTVTYNT 641
+A + +E++ G++PN T T
Sbjct: 875 KATELRNEMLRQGLIPNNKTSRT 897
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 168/570 (29%), Positives = 273/570 (47%), Gaps = 8/570 (1%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF DM+ P PS F+ L+ + + SL M + + Y+ILIN +C
Sbjct: 68 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC 127
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q S AL + + + G P++V N+LLNG+ I A L +M
Sbjct: 128 RRSQLSLALA-------VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340
PD+ TFN ++ G ++ + L+ + V G P+ Y I V GLC G +D A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG 400
+ + M + I P + +N+II A +A + M G+ P+ T +SL+
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIE+ N V F+ L+D + + G L+ A+ L++E+ +R I PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
+S+ ING +DEA +F M PN YN+LI GFC +++E ++L R
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
EM Q+GL+ + T+ +I+GF + A F M G++PDI+TY+ L+ G C
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640
+ A + + ++PDI TYNI + G C K+ + L G+ PN VTY
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540
Query: 641 TLMNGVCCDIL-DRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699
T+M+G C L + A + ++ + +P+ T N L+ + G + +++
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 600
Query: 700 SFDFDETSYKIMDRAYHNIQENAEFFQETS 729
F D ++ ++ H+ + + F + S
Sbjct: 601 RFVGDASTIGLVTNMLHDGRLDKSFLKMLS 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/570 (28%), Positives = 268/570 (47%), Gaps = 8/570 (1%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF DM+ P PS FN L+ + + SL M D + Y+I IN +C
Sbjct: 70 LFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC 129
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q S AL + + + G P++V ++LLNGY ++ I A L ++M
Sbjct: 130 RRSQLSLALA-------VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340
PD TF ++ G + + L+ + G P+ Y V GLC G +D A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG 400
+ + M + I + +N+II + ++A + M G+ P T SSL+
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIE+ N V F+ L+D + + G L+ A+ L++E+ +R I PD
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
+S+ ING +DEA +F M PN Y++LI GFC ++ E ++L R
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
EM Q+GL+ + T+ +I+GF + A F M G+ P+I+TYN L+ G CK
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640
+ +A + + ++PDI TYNI + G C K+ + L G+ PN + YN
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYN 542
Query: 641 TLMNGVCCD-ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699
T+++G C + A + K+ + +PN T N L+ + G E + +++
Sbjct: 543 TMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSC 602
Query: 700 SFDFDETSYKIMDRAYHNIQENAEFFQETS 729
F D ++ ++ H+ + + F S
Sbjct: 603 GFAGDASTIGLVTNMLHDGRLDKSFLDMLS 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 161/525 (30%), Positives = 254/525 (48%), Gaps = 8/525 (1%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF +M+ P PS FN L+ + + SL M D ++YNILIN +C
Sbjct: 67 LFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFC 126
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q AL G + + G P++V ++LLNGY + I +A L ++M
Sbjct: 127 RRSQLPLALAVLGK-------MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340
+ P+ VTFN ++ G + + L+ + G P+ Y V GLC G +D A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG 400
+ + M + I + + +II A +A + M G+ P+ T +SL+
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIE+ N V F+ L+D + + G L+ A+ L++E+ +R I PD
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
+S+ ING +DEA +F M PN YN+LI GFC ++ E ++L R
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
EM Q+GL+ + T+N +I G + G A F M G+ PDI+TY+ L+ G CK
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640
+ +A + + ++PDI TYNI + G C K+ + L G+ PN + Y
Sbjct: 480 KLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 539
Query: 641 TLMNGVCCDIL-DRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG 684
T+++G C L + A + ++ + +PN T N L+ + G
Sbjct: 540 TMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDG 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 162/566 (28%), Positives = 272/566 (48%), Gaps = 8/566 (1%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF +M+ P PS F+ L+ + + SL M + + Y+ILIN +C
Sbjct: 68 LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 127
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q AL G + + G PN+V ++LLNGY ++ I +A L ++M
Sbjct: 128 RRSQLPLALAVLGK-------MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340
P+ VTFN ++ G + + L+ + G P+ Y + V GLC G D A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG 400
M + + P + +N+II + ++A +K M G+ P+ T SSL+
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIE+ + F+ L+D + + G L+ A+ L++E+ +R I P
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
V +S+ ING +DEA +F M P+ YN+LI GFC ++ E +++ R
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
EM Q+GL+ + T+NI+I G + G A + F +M G+ P+I+TYNTL+ G CK
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640
+ +A + + ++P I TYNI + G C K+ + L G+ P+ V YN
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540
Query: 641 TLMNGVCCD-ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699
T+++G C + A + ++ + +PN N L+ + G E + +++
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 600
Query: 700 SFDFDETSYKIMDRAYHNIQENAEFF 725
F D ++ ++ H+ + + F
Sbjct: 601 GFAGDASTIGLVTNMLHDGRLDKSFL 626
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (658), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 164/570 (28%), Positives = 263/570 (46%), Gaps = 8/570 (1%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF M+ P PS FN L+ + + SL M + V + YNILIN +C
Sbjct: 72 LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFC 131
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q S AL G + + G P++V ++LLNGY + I A L ++M
Sbjct: 132 RRSQISLALALLGK-------MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340
PD +TF ++ G + + L+ + G PN Y + V GLC G D A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG 400
+ M I + FN+II + + ++A +K M G+ P+ T SSL+
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIEK N V F L+D + + G + A+ L++++ +R I PD
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
+++ +NG +D+A +F M P+ YN+LI GFC ++ + +L R
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 424
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
EM +GL+ D T+ +I G G A F M G+ PDI+TY+ L+ G C
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640
+ +A E+ + M + DI Y + G C K++ + L G+ PN VTYN
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 544
Query: 641 TLMNGVCCD-ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699
T+++G+C +L A + K+ + +PN T N L+ + G + +++
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 604
Query: 700 SFDFDETSYKIMDRAYHNIQENAEFFQETS 729
F D ++ ++ H+ + + F S
Sbjct: 605 RFVGDASTIGLVANMLHDGRLDKSFLDMLS 634
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 178/638 (27%), Positives = 303/638 (47%), Gaps = 27/638 (4%)
Query: 69 LAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVE-MSAE----- 122
LA + WV+ + G + H+V+ +C H+ R+ D H + MS +
Sbjct: 52 LALKFLKWVVKQPGL-ETDHIVQLVCITTHIL-VRARMYDPARHILKELSLMSGKSSFVF 109
Query: 123 -VMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181
+ YR+ + S IL + LR G ++FR M G PS YT NA++
Sbjct: 110 GALMTTYRLCN----SNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL 165
Query: 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRG---QTSYALGKCGAGRMI 238
++G S L M K D +NILIN C G ++SY + K
Sbjct: 166 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQK------- 218
Query: 239 FDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK 298
+++ G +P +V YN +L+ Y K A L + M+S+ + D T+N+++ C+
Sbjct: 219 ---MEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275
Query: 299 YGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFA 358
+ G LLRD+ + PN Y+ + G G++ A + +M G+SP+
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335
Query: 359 FNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418
FN++I + G + A + + +M GLTPS + LL GLCK A +M
Sbjct: 336 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 395
Query: 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVD 478
G + ++ +T ++DG + G L A L NE+++ I PD V +SA ING K G
Sbjct: 396 RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFK 455
Query: 479 EAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIII 538
A + + R+G PN Y++LI C G L EA+++ M +G D+FTFN+++
Sbjct: 456 TAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLV 515
Query: 539 NGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLD 598
CK G++ A + M G++P+ V+++ LI GY + + ++A + ++M G
Sbjct: 516 TSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH 575
Query: 599 PDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC-CDILDRAIII 657
P TY + G C + +A L L + +TV YNTL+ +C L +A+ +
Sbjct: 576 PTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSL 635
Query: 658 AAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQK 695
++++ + +P+ T L+S C++G +L+ ++
Sbjct: 636 FGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE 673
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| 359489321 | 889 | PREDICTED: pentatricopeptide repeat-cont | 0.942 | 0.830 | 0.650 | 0.0 | |
| 255571081 | 884 | pentatricopeptide repeat-containing prot | 0.892 | 0.790 | 0.658 | 0.0 | |
| 449487636 | 885 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.942 | 0.833 | 0.609 | 0.0 | |
| 224136366 | 726 | predicted protein [Populus trichocarpa] | 0.891 | 0.961 | 0.657 | 0.0 | |
| 449433161 | 917 | PREDICTED: pentatricopeptide repeat-cont | 0.933 | 0.797 | 0.605 | 0.0 | |
| 356519757 | 871 | PREDICTED: protein Rf1, mitochondrial-li | 0.943 | 0.848 | 0.608 | 0.0 | |
| 297734659 | 569 | unnamed protein product [Vitis vinifera] | 0.657 | 0.905 | 0.646 | 0.0 | |
| 357140210 | 841 | PREDICTED: putative pentatricopeptide re | 0.793 | 0.738 | 0.433 | 1e-158 | |
| 14488297 | 854 | Putative salt-inducible protein [Oryza s | 0.830 | 0.761 | 0.411 | 1e-155 | |
| 242039913 | 846 | hypothetical protein SORBIDRAFT_01g02626 | 0.798 | 0.738 | 0.429 | 1e-153 |
| >gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/767 (65%), Positives = 606/767 (79%), Gaps = 29/767 (3%)
Query: 1 MVKNEKGYILKAFSQKFCPYFLVKVMKLLETRETAFAFFKLVVCDDSESTIRSCCIAAHI 60
M+K +GY+L+ F+Q FCP FLVK+MKLLE+RE AFAFFK DDSESTIRSCC+AAH+
Sbjct: 93 MIKQSQGYVLRGFAQNFCPCFLVKIMKLLESREIAFAFFKFAFQDDSESTIRSCCVAAHL 152
Query: 61 FAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMS 120
AAE+LR +AQDV+ WVI+RIG RS +VEFM H++ SDF VLD+L+ ++ EM
Sbjct: 153 LAAEELRHVAQDVIWWVIARIGVLRSGDLVEFMWRGHHVYESDFSVLDSLMRAFVNAEMG 212
Query: 121 AEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180
+ +EIL RMREVG+ PS S + ILFK LLRVGDYG+VWKLF+D+I GP+P YTF+ +
Sbjct: 213 FQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGI 272
Query: 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL----------- 229
ILGFCR GCI +GESLLH+M K+ C + FAYNI+INA CIRG+TS AL
Sbjct: 273 ILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGC 332
Query: 230 -----------------GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANM 272
G R +FD ++E G SPN ++YN L+NGYVK R+IDQANM
Sbjct: 333 NPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANM 392
Query: 273 LYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332
LYEEMR + IAPD +TFNI+VSGH KYG EDGDRLL+D+SV GLLP+ +L+DI+V+GLC
Sbjct: 393 LYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLC 452
Query: 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC 392
WAGRLDEAMEF DM EKG+SPSI AFNS+IAAYS+AGLE+ AFEAYK+M FGLTPS
Sbjct: 453 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 512
Query: 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNEL 452
TCSSLL+GL GRL EA +L+ +MIEKG +N +AFTVLLD +F+ GD++GAQSLW E+
Sbjct: 513 TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEM 572
Query: 453 NRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL 512
RR IFPD VAFSA+I+GLSK GLV+EAY VFLEM R G +PNNFAYNSLI GFC GKL
Sbjct: 573 ERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKL 632
Query: 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTL 572
NEALKLE+ MR +GLLPD FT N+II G CKQGRM+ AI+ FMDM++TGL PDI+TYNTL
Sbjct: 633 NEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTL 692
Query: 573 IGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632
I GYCKA D+V AD LVN+MYA G +PD+TTYNIR+HG+C+ R+MN+A +MLDELVSAGI
Sbjct: 693 INGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGI 752
Query: 633 VPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLW 692
VPNTVTYN+++NGVC DILDRA+I+ A+LLKMAFVPNVVT N+LLS F KQGMPE+TL+W
Sbjct: 753 VPNTVTYNSMLNGVCSDILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMPERTLMW 812
Query: 693 GQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLM 739
G KLSEI + FDE +YKIMD+A+H I E+A+F + TS KSLFLDFLM
Sbjct: 813 GHKLSEIPYAFDEITYKIMDKAHH-ILEDADFSRVTSAKSLFLDFLM 858
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/727 (65%), Positives = 575/727 (79%), Gaps = 28/727 (3%)
Query: 1 MVKNEKGYILKAFSQKFCPYFLVKVMKLLETRETAFAFFKLVVCDDSESTIRSCCIAAHI 60
++K KGYILK+FSQKFCP+FLVK+MKLLE+R++AFAFFKL +DS++T+ SCCIAAHI
Sbjct: 105 LIKQGKGYILKSFSQKFCPFFLVKIMKLLESRQSAFAFFKLAFQNDSDATVHSCCIAAHI 164
Query: 61 FAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMS 120
AAE L+LLAQDV++WVI RIGA RS H+VEFM + H + SDF +L+ L+ G++ EM+
Sbjct: 165 LAAESLQLLAQDVISWVIRRIGASRSAHLVEFMWANHHKYESDFSILNTLMRGFMNSEMA 224
Query: 121 AEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180
E +EIL RMREVG+ PS SAI+ILF+ LLRVGDYGSVWKL R MI GPRP N+ FN +
Sbjct: 225 YESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIM 284
Query: 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALG---------- 230
IL FC+ G +R+ ESLL VM K+ C D +AYNILINAY IRG+TS ALG
Sbjct: 285 ILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGC 344
Query: 231 -------------KCGAG-----RMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANM 272
C G R IF+ IQE GLSPNV +YN L++GY KARD+ QANM
Sbjct: 345 KPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANM 404
Query: 273 LYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332
LYEEMR + IAPD TFNI+V+G+ KYG D L RD S+S L+P+C+LYD++VAGLC
Sbjct: 405 LYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLC 464
Query: 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC 392
WAG+LDEAM+F EDM EKG+ PS+ AFNS+IAAYSRAG E+NA +AYKIM FGL PSS
Sbjct: 465 WAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSS 524
Query: 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNEL 452
TCSS+L+GL KKGRL EA DLL KMI+KG P+NKVAFTVLLDGYF++GD GA SLW E+
Sbjct: 525 TCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEM 584
Query: 453 NRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL 512
R I PDA+AFSA+I+GLSKAGLV+EAY F EMS+ GFVPNNF YNSLI G CN GKL
Sbjct: 585 EARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKL 644
Query: 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTL 572
+EALKLEREMRQKGLLPD FT NIIINGFCK+GRMK A DAF +M+ G+ PD VTYNTL
Sbjct: 645 HEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTL 704
Query: 573 IGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632
IGGYCK LD+V ADE +NKMYA G DPDITTYNIR+ G+C+ +K+++A MLDEL++ G+
Sbjct: 705 IGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGV 764
Query: 633 VPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLW 692
VPNTVTYNT+MN VC D+LDRA+++ AKLLKMAFVPNVVTTNVLLSHFCKQGMPEK L+W
Sbjct: 765 VPNTVTYNTMMNAVCTDMLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKALIW 824
Query: 693 GQKLSEI 699
GQKL+++
Sbjct: 825 GQKLNKL 831
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g19290-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/766 (60%), Positives = 578/766 (75%), Gaps = 28/766 (3%)
Query: 2 VKNEKGYILKAFSQKFCPYFLVKVMKLLETRETAFAFFKLVVCDDSESTIRSCCIAAHIF 61
+K +GY+LK S+ FCP+ LVK+MKL E RETA+AFFKL DDSE T+RSCC+ AH+
Sbjct: 85 IKLYQGYVLKDVSRNFCPFLLVKIMKLFECRETAYAFFKLAFKDDSEETVRSCCVLAHLL 144
Query: 62 AAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSA 121
AAE LR LAQD+V+WV++RIG GRSK++ FM + ++ SDF VLD L+ +++ EM
Sbjct: 145 AAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRVYESDFSVLDTLMQAFVKSEMHF 204
Query: 122 EVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181
E +EIL +MREVG+ P+ SAI+ILF+ L+R GD G+VWKLF D++ GP P+N+TFN LI
Sbjct: 205 EALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLI 264
Query: 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL------------ 229
L FCR G RIGE+LLHVM K+ C D ++YNI+INA C++GQ+SYAL
Sbjct: 265 LEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCK 324
Query: 230 ----------------GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANML 273
G R FD I++ GLS N +VYN +++GYVKARDI QAN+L
Sbjct: 325 PSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLL 384
Query: 274 YEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333
+EEMR++DI PD +TFN +V+GH +YG EDG+RLLRDLSVSGLL + +L D+TVAGLCW
Sbjct: 385 FEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCW 444
Query: 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCT 393
AGR DEAM+ E++ EKGI PS+ AFNSIIAAY AGLEE AF AY IM +FGLTPSS T
Sbjct: 445 AGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSST 504
Query: 394 CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453
CSSLL+ L +KG L EAW L MI+KGFP+ +AFTVLLDGYFRIG + A+SLWNE+
Sbjct: 505 CSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMK 564
Query: 454 RRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLN 513
R +FPDAVAF+A+INGL +GL+ +AY VF +M R GFVPNNF YNSLI GFC GKLN
Sbjct: 565 GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLN 624
Query: 514 EALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573
EALKL REM ++GLLPD FT N+II G CKQGRMK AI+ FMDM R GL PDIVTYNTLI
Sbjct: 625 EALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLI 684
Query: 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIV 633
GYCKA D+ AD+L+ KM G +PD+TTYNIR+HGYC +RK+N+A M+L+EL+S GIV
Sbjct: 685 DGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIV 744
Query: 634 PNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWG 693
PNTVTYNT++N VC ILD A+I+ AKLLKMAFVPN VT NVLLS FCKQGMPEK + WG
Sbjct: 745 PNTVTYNTMINAVCNVILDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWG 804
Query: 694 QKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLM 739
QKLSEI DFDET++K+M+RAY ++E + EKS+F+DFLM
Sbjct: 805 QKLSEIHLDFDETTHKLMNRAYRALEEGGVVINTSYEKSVFMDFLM 850
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa] gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/726 (65%), Positives = 564/726 (77%), Gaps = 28/726 (3%)
Query: 26 MKLLETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRIGAGR 85
MK LE+RETAF FFK DDS+ ++S C+AAH+ A++L+ LAQDVV+WVI R+G R
Sbjct: 1 MKSLESRETAFGFFKFAFQDDSDEMVKSSCVAAHVLGAQNLKFLAQDVVSWVIRRVGVDR 60
Query: 86 SKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITIL 145
S+ +VEFM F SDF VLD L+ G+L+VEM E +EI+ RMREVG+ PS SAITIL
Sbjct: 61 SREVVEFMWKRHAEFESDFSVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITIL 120
Query: 146 FKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMC 205
FK LLR+GD+GSVWKL R MIH GPRP N FNA+ILGFCR G +++GESLL VM K+ C
Sbjct: 121 FKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKC 180
Query: 206 VADFFAYNILINAYCIRGQTSYALGK-----------------------CGAGRM----- 237
D +AYNILINAYC RGQT ALG C G M
Sbjct: 181 QPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARN 240
Query: 238 IFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC 297
+FD ++E G PNVV YN L+NGYVKARDI QANMLYEEM+S+ +APD TFNI+V+GH
Sbjct: 241 LFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHY 300
Query: 298 KYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIF 357
+YG ED DRLLRDLS SG L +LY+I V+GLCWAG LDEAM+F EDM EKGI+P++
Sbjct: 301 RYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVV 360
Query: 358 AFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKM 417
AFNSIIAAYSRAGLEE A++AY++M +FGL PSS TCSSL++GL K RL EA DLL +M
Sbjct: 361 AFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEM 420
Query: 418 IEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477
I +G PINK AFT+LLDGYFR+GD+ GA SLWNE+ R I PDAVAFSA+INGLS GLV
Sbjct: 421 IVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLV 480
Query: 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNII 537
DEAY VFL+MS+ GF+PNNF YNSLI GFCN G+L EAL LEREM +KGLLPD FT NII
Sbjct: 481 DEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNII 540
Query: 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGL 597
ING CK+GRMK A D F +M+ TGL+PDIVTYNTLI GYCKA D V DE+VNKMYA G
Sbjct: 541 INGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGW 600
Query: 598 DPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIII 657
DPDITTYNIR+HG C RKM++A MML+EL+SAG+VP+TVTYNT+MNGVC D+L+RA+I+
Sbjct: 601 DPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVCTDVLERAMIV 660
Query: 658 AAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717
AKLLKMAFVPNVVT N+LLSHFCKQGMPEKT++WGQKL+EISF FDE S K+MDRAY N
Sbjct: 661 TAKLLKMAFVPNVVTANLLLSHFCKQGMPEKTIMWGQKLNEISFGFDEISIKLMDRAYRN 720
Query: 718 IQENAE 723
IQ+N +
Sbjct: 721 IQDNVD 726
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/761 (60%), Positives = 572/761 (75%), Gaps = 30/761 (3%)
Query: 2 VKNEKGYILKAFSQKFCPYFLVKVMKLLETRETAFAFFKLVVCDDSESTIRSCCIAAHIF 61
+K +GY+LK S+ FCP+ LVK+MKL E RETA+AFFKL DDSE T+RSCC+ AH+
Sbjct: 116 IKLYQGYVLKGLSRNFCPFLLVKIMKLFECRETAYAFFKLAFKDDSEETVRSCCVLAHLL 175
Query: 62 AAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSA 121
AAE LR LAQD+V+WV++RIG GRSK++ FM + ++ SD+ VLD L+ +++ EM
Sbjct: 176 AAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRVYESDYSVLDTLMRAFVKSEMHF 235
Query: 122 EVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181
E +EIL +MREVG+ P+ SAI+ILF+ L+R GD G+VWKLF D++ GP P+N+TFN LI
Sbjct: 236 EALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLI 295
Query: 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL------------ 229
L FCR G RIGE+LLHVM K+ C D ++YNI+INA C++GQ+SYAL
Sbjct: 296 LEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCK 355
Query: 230 ----------------GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANML 273
G R FD I++ GLS N +VYN +++GYVKARDI QAN+L
Sbjct: 356 PSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLL 415
Query: 274 YEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333
+EEMR++DI PD +TFN +V+GH +YG EDG+RLLRDLSVSGLL + +L D+TVAGLCW
Sbjct: 416 FEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCW 475
Query: 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCT 393
AGR DEAM+ E++ KGI PS+ AFNSIIAAY AGLEE AF AY IM +FGLTPSS T
Sbjct: 476 AGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSST 535
Query: 394 CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453
CSSLL+ L +KG L EAW L MI+KGFP+ +AFTVLLDGYFRIG + A+SLWNE+
Sbjct: 536 CSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMK 595
Query: 454 RRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLN 513
R +FPDAVAF+A+INGL +GL+ +AY VF +M R GFVPNNF YNSLI GFC GKLN
Sbjct: 596 GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLN 655
Query: 514 EALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573
EALKL REM ++GLLPD FT N+II G CKQGRMK AI+ FMDM R GL PDIVTYNTLI
Sbjct: 656 EALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLI 715
Query: 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIV 633
GYCKA D+ AD+L+ KM G +PD+TTYNIR+HGYC +RK+N+A M+L+EL+S GIV
Sbjct: 716 DGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIV 775
Query: 634 PNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWG 693
PNTVTYNT++N VC ILD A+I+ AKLLKMAFVPN VT NVLLS FCKQGMPEK + WG
Sbjct: 776 PNTVTYNTMINAVCNVILDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWG 835
Query: 694 QKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLF 734
QKLSEI DFDET++K+M+RAY ++E E ++ E S F
Sbjct: 836 QKLSEIHLDFDETTHKLMNRAYRALEEGGE--KKRKEGSAF 874
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/769 (60%), Positives = 595/769 (77%), Gaps = 30/769 (3%)
Query: 1 MVKNEKGYILKAFSQKFCPYFLVKVMKLLETRETAFAFFKLVV--CDDSESTIRSCCIAA 58
++K ++G+ LKAFS +FCP+FLVK+MKL +TR+ AFAFFKL C DSE +R C+AA
Sbjct: 72 ILKTDQGFPLKAFSLRFCPFFLVKIMKLFKTRDAAFAFFKLAFGDCSDSEEILRLSCVAA 131
Query: 59 HIFAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVE 118
H+ AA+ L+LLAQDVV+W+I+R+G GR+ +V+FM + ++ SDF VL+ LL G+L V
Sbjct: 132 HVLAAQKLQLLAQDVVSWLIARVGTGRTNKIVDFMWRNHAMYESDFSVLNTLLRGFLNVG 191
Query: 119 MSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178
M E +E+L MR VG+ P S+ITIL + LLR+GDYGSVWKLF+DMI GPRPSN TFN
Sbjct: 192 MGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFN 251
Query: 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL--------- 229
A+I GFCR + +GESLLH+M K+MC D +NILINA CI G+T A+
Sbjct: 252 AMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRS 311
Query: 230 -------------------GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQA 270
G R +FD IQ+ G++PN +YN L++GY KAR++ QA
Sbjct: 312 GVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQA 371
Query: 271 NMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAG 330
++LYEEMR+ ++PD VTFNI+V GH KYG +ED DRLL+DL VSGL + +LYD+ V+
Sbjct: 372 SLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSS 431
Query: 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS 390
LCWAGRLDEAM+ +++ EKG++ S+ AFNS+I AYSRAGLE+ AFEAY+IM + G TPS
Sbjct: 432 LCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPS 491
Query: 391 SCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWN 450
S TC+SLL+GLC+KG L EA LL +M+EKGFPINKVA+TVLLDGYF++ +L GAQ LW
Sbjct: 492 SSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWK 551
Query: 451 ELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRG 510
E+ R I+PDAVAF+A I+GLSKAG V+EAY VFLEMS IGFVPNNFAYNSLI G C+ G
Sbjct: 552 EMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCG 611
Query: 511 KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYN 570
++ EALKLE+EMRQKGLL D FTFNIII+GFC++G+MK AI+ F+DM R GL+PDI T+N
Sbjct: 612 RVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFN 671
Query: 571 TLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630
LIGGYCKA D+V A E+VNKMY+ GLDPDITTYN MHGYC +RKMNQA ++LD+L+SA
Sbjct: 672 ILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISA 731
Query: 631 GIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTL 690
GIVP+TVTYNT+++G+C DILDRA+I+ AKLLKM F+PNV+TTN+LLSHFCKQGMPEK L
Sbjct: 732 GIVPDTVTYNTMLSGICSDILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKAL 791
Query: 691 LWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLM 739
+WGQKL EISF FDE SY+I+D+AY +Q++ E + T EK LF+DFLM
Sbjct: 792 IWGQKLREISFGFDEISYRILDQAYCLMQDDVELVRGTYEKHLFMDFLM 840
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/543 (64%), Positives = 423/543 (77%), Gaps = 28/543 (5%)
Query: 119 MSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178
M + +EIL RMREVG+ PS S + ILFK LLRVGDYG+VWKLF+D+I GP+P YTF+
Sbjct: 1 MGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFS 60
Query: 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL--------- 229
+ILGFCR GCI +GESLLH+M K+ C + FAYNI+INA CIRG+TS AL
Sbjct: 61 GIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIER 120
Query: 230 -------------------GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQA 270
G R +FD ++E G SPN ++YN L+NGYVK R+IDQA
Sbjct: 121 GCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQA 180
Query: 271 NMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAG 330
NMLYEEMR + IAPD +TFNI+VSGH KYG EDGDRLL+D+SV GLLP+ +L+DI+V+G
Sbjct: 181 NMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSG 240
Query: 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS 390
LCWAGRLDEAMEF DM EKG+SPSI AFNS+IAAYS+AGLE+ AFEAYK+M FGLTPS
Sbjct: 241 LCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPS 300
Query: 391 SCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWN 450
TCSSLL+GL GRL EA +L+ +MIEKG +N +AFTVLLD +F+ GD++GAQSLW
Sbjct: 301 PSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWG 360
Query: 451 ELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRG 510
E+ RR IFPD VAFSA+I+GLSK GLV+EAY VFLEM R G +PNNFAYNSLI GFC G
Sbjct: 361 EMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCG 420
Query: 511 KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYN 570
KLNEALKLE+ MR +GLLPD FT N+II G CKQGRM+ AI+ FMDM++TGL PDI+TYN
Sbjct: 421 KLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYN 480
Query: 571 TLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630
TLI GYCKA D+V AD LVN+MYA G +PD+TTYNIR+HG+C+ R+MN+A +MLDELVSA
Sbjct: 481 TLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSA 540
Query: 631 GIV 633
GI+
Sbjct: 541 GIL 543
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/665 (43%), Positives = 406/665 (61%), Gaps = 44/665 (6%)
Query: 111 LHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170
LH +L M++E + +L +R G PS SAI L + L R G+ WK+F +M GP
Sbjct: 147 LHAFLAAGMASEALVVLAHIRCGGNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTARGP 206
Query: 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALG 230
RPS FNA+ILGFC G + IG LL VM ++ + D +YNILI Y + GQ
Sbjct: 207 RPSLAIFNAMILGFCHRGLVHIGLGLLGVMWRFNVIPDACSYNILIKGYSVFGQA----- 261
Query: 231 KCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFN 290
G + D ++E G P VV YN L+N ++ A L++EM I + +TFN
Sbjct: 262 --GDAFQLLDEMRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEANTITFN 319
Query: 291 IIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAG-------------------- 330
++V G+ K G M++ R++ GL+P+C ++I AG
Sbjct: 320 VLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFNILSAGAYKFGKAVQLAHGQQELHEM 379
Query: 331 ----------------LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374
LCW GRLD+A + E+G+ S+ FN+++AAYS+ G +E
Sbjct: 380 FGSRISADSVDMVVCRLCWDGRLDDAWKLVCSAIEQGVPVSVAGFNALVAAYSKEGFDEQ 439
Query: 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLD 434
A E Y +M++ GL PSS T + L++GLC +GRL +A LL MI KG+ + +FT+ +D
Sbjct: 440 ALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLLEHMICKGYCVG-TSFTIYMD 498
Query: 435 GYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494
YFR G++ GA W+++ + + PD +AFSAYI+GL + V+EAY F+EM+ GFVP
Sbjct: 499 SYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFVP 558
Query: 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAF 554
NN YNSLI+ FC G ++EALKLE++MRQ GL+PD FT NI+I+GFCK+GR+ F
Sbjct: 559 NNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSNILIDGFCKEGRLDMMNKRF 618
Query: 555 MDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614
+DMY +GL PD+VTYNT+I YC A D+ A +NKM A G +PDI TYNI MH CN
Sbjct: 619 LDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLADGCEPDIFTYNIWMHSLCNN 678
Query: 615 RKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTN 674
+N+A MLDELV+ G +PN+VTYNTLM+G+C D+LDRA+I+ KL+KMAF PN VT N
Sbjct: 679 HLLNRAVKMLDELVAMGCMPNSVTYNTLMDGICSDVLDRAMILTGKLIKMAFQPNTVTVN 738
Query: 675 VLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLF 734
V SHFCKQG ++ L+W +KL E S FD+ + I+D AY ++++++ ++ LF
Sbjct: 739 VFFSHFCKQGFGKRALVWAEKLKEDSVAFDDATMNILDWAYKEMEDDSQASNADIDRCLF 798
Query: 735 LDFLM 739
L+FLM
Sbjct: 799 LEFLM 803
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa] gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 287/697 (41%), Positives = 418/697 (59%), Gaps = 47/697 (6%)
Query: 111 LHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170
LH +L M+ E +++L R+R G PS SA+ L + L R G+ + WK+F +M GP
Sbjct: 163 LHAFLAAGMADEALDVLARVRRAGDTPSLSALAALLRLLFRGGEVRAAWKVFEEMAARGP 222
Query: 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALG 230
RP+ FNA+I G C G +R+ LL VM ++ V D +YNIL+ +C+ GQ A
Sbjct: 223 RPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSYNILMKGHCLYGQAEDAFN 282
Query: 231 KCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFN 290
+FD ++ G P +V YN L+N + + +A ML++EM + + +TFN
Sbjct: 283 -------LFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEVNTITFN 335
Query: 291 IIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAG-------------------- 330
+++ G+ K G ME+ + ++ GL+P+C ++I AG
Sbjct: 336 VLIDGYAKAGQMENANMACAEMKAMGLMPDCCTFNILSAGAYKFGKAALFVLDQQQLHEM 395
Query: 331 ----------------LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374
LCW GRLD+A E EKG+ S+ FN++IAAYS+ G +E
Sbjct: 396 FGSQLSTDGIDMLICRLCWDGRLDDAWELLCSAIEKGVQVSVSGFNALIAAYSKEGFDEE 455
Query: 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLD 434
AFE YK M++ GL PSS T + L++GLC +GRL +A L M+ G+ + +FT+ LD
Sbjct: 456 AFELYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQARLFLEYMVRMGYCV-IASFTIYLD 514
Query: 435 GYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494
FR GD++GA W+++ + PD VAFSAY+NGL + +DEAY F+EM R G VP
Sbjct: 515 SSFRAGDVLGALKCWDDMKIVGLQPDFVAFSAYVNGLCRLDFLDEAYNGFIEMIRRGLVP 574
Query: 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAF 554
NNF YNSLI+ FC G ++EALKLE++MRQ GL+PD FT NI+I+GFC++G + A + F
Sbjct: 575 NNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVPDIFTRNILIDGFCREGGLNTANNLF 634
Query: 555 MDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614
MY GL PD+VTYNT++ YC++ DI A +NKM A G +PDI TYNI MH C+
Sbjct: 635 FGMYSIGLTPDVVTYNTMLNAYCRSKDINGAMIFMNKMLADGCEPDIFTYNIWMHSLCSN 694
Query: 615 RKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTN 674
+N+A M+LDEL + PN+VTYNTLM+G+C D+LDRA+I+ +L+K+AF PN VT N
Sbjct: 695 HLLNRAMMLLDELAATDCAPNSVTYNTLMDGICSDVLDRAMILTGRLIKLAFQPNTVTIN 754
Query: 675 VLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLF 734
+L SHFCK G ++ L+W +KL + SF+FD+ + I+D AY +++++ +K LF
Sbjct: 755 ILFSHFCKNGFGKRALVWAEKLRDDSFNFDDATRNILDWAYRDMEDDPHASSADIDKCLF 814
Query: 735 LDF--LMGCMTLNVTGDFCVQSMKLQTAAIGRRGRKA 769
L+F LM C T+ + F + + T G GRK+
Sbjct: 815 LEFLMLMTCTTIRNSRSFKFTHVPINT-VFGHSGRKS 850
|
Source: Oryza sativa Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor] gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/657 (42%), Positives = 403/657 (61%), Gaps = 32/657 (4%)
Query: 111 LHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170
LH +L M+AE +++L R+R G PS SA+ L + L R G+ + W +F +M GP
Sbjct: 156 LHAFLAAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAARGP 215
Query: 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL- 229
RPS TFNA+ILGFC G +R+ LL +M ++ V + +YNILI +C+ G + A
Sbjct: 216 RPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFK 275
Query: 230 ---------------------------GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262
G+ R +FD + + G+ N + +N L++GY
Sbjct: 276 LFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYA 335
Query: 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCT 322
K +DQA Y EM++R + PD+ TFNII +G K+G +L+ D + G
Sbjct: 336 KTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYKFG---HAAQLVHDHDMFGSHMLAD 392
Query: 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIM 382
D+ V LCW RLD+A E E+G S+ FN++IAAYS+ GL E AFE Y+IM
Sbjct: 393 GMDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIM 452
Query: 383 HQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDL 442
++ GL PSS T + L++GLC +GRL EA LL M+ KG+ ++ +FT+ LD FR G+
Sbjct: 453 NKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLS-TSFTICLDASFREGNA 511
Query: 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSL 502
+ A W+++ + + PD +AFSAYINGL + V+EAY F EM+ G VPNNF YNS+
Sbjct: 512 VCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSI 571
Query: 503 IAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562
I+ C G + EALKL++ MRQ GL+PD +T NI+I+G C++G+++ + +DM GL
Sbjct: 572 ISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGL 631
Query: 563 VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622
PD VTYNT+I YC+A D+ A +NKM A G +PDI TYNI MH C+ +NQA
Sbjct: 632 TPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHMLNQAGK 691
Query: 623 MLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCK 682
+LDELV+ G P++VTYNTLM+G+C D+LDRA+I+ +L+KMAF PN +T NV LSHFCK
Sbjct: 692 VLDELVAMGCPPDSVTYNTLMDGICSDVLDRAMILTGRLIKMAFQPNTITLNVFLSHFCK 751
Query: 683 QGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLM 739
QG ++ L+W +KL E SF FD+ + I+D A ++++ E E+ LFL+FLM
Sbjct: 752 QGFGKRALMWAEKLREDSFVFDDATRNIIDWARRELEDDPHANNEDIERCLFLEFLM 808
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.624 | 0.654 | 0.301 | 3.2e-65 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.752 | 0.807 | 0.273 | 5.2e-65 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.775 | 0.669 | 0.272 | 1.7e-60 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.716 | 0.890 | 0.285 | 7.3e-59 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.659 | 0.820 | 0.298 | 3.2e-58 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.717 | 0.892 | 0.275 | 1.1e-57 | |
| TAIR|locus:2039415 | 743 | AT2G16880 "AT2G16880" [Arabido | 0.729 | 0.768 | 0.260 | 3.6e-57 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.660 | 0.815 | 0.287 | 5.9e-57 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.611 | 0.830 | 0.299 | 7.5e-57 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.763 | 0.819 | 0.269 | 6.8e-56 |
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 150/498 (30%), Positives = 262/498 (52%)
Query: 154 DYGS-VWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAY 212
+Y S V+K ++ L S+ F+ ++ + R I S++H+ + + +Y
Sbjct: 114 EYASLVFKSLQETYDLCYSTSS-VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSY 172
Query: 213 NILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANM 272
N +++A IR + + + + +F + E +SPNV YN L+ G+ A +ID A
Sbjct: 173 NAVLDA-TIRSKRNISFAE-----NVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226
Query: 273 LYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332
L+++M ++ P+ VT+N ++ G+CK ++DG +LLR +++ GL PN Y++ + GLC
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLC 286
Query: 333 WAGRLXXXXXXXXXXXXKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGXXXXXX 392
GR+ +G S +N++I Y + G A + M + G
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346
Query: 393 XXXXXXVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNEL 452
+CK G + A + L +M +G N+ +T L+DG+ + G + A + E+
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Query: 453 NRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL 512
N P V ++A ING G +++A V +M G P+ +Y+++++GFC +
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDV 466
Query: 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTL 572
+EAL+++REM +KG+ PD T++ +I GFC+Q R K A D + +M R GL PD TY L
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526
Query: 573 IGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632
I YC D+ +A +L N+M G+ PD+ TY++ ++G + +A +L +L
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586
Query: 633 VPNTVTYNTLMNGVCCDI 650
VP+ VTY+TL+ C +I
Sbjct: 587 VPSDVTYHTLIEN-CSNI 603
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 166/606 (27%), Positives = 291/606 (48%)
Query: 70 AQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYR 129
AQ + +I R G R + +V + F GS+ V D L+ Y++ E E
Sbjct: 132 AQSCLLRMIRRSGVSRLE-IVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTL 190
Query: 130 MREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189
+R G S A L SL+R+G W +++++ G + YT N ++ C++G
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 190 I-RIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS 248
+ ++G L V K + D YN LI+AY +G A + + + +G S
Sbjct: 251 MEKVGTFLSQVQEKGV-YPDIVTYNTLISAYSSKGLMEEAFE-------LMNAMPGKGFS 302
Query: 249 PNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRL 308
P V YN ++NG K ++A ++ EM ++PD+ T+ ++ CK G + + +++
Sbjct: 303 PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKV 362
Query: 309 LRDLSVSGLLPNCTLYDITVAGLCWAGRLXXXXXXXXXXXXKGISPSIFAFNSIIAAYSR 368
D+ ++P+ + ++ +G L G+ P + +I Y R
Sbjct: 363 FSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCR 422
Query: 369 AGLEENAFEAYKIMHQFGXXXXXXXXXXXXVGLCKKGRLPEAWDLLCKMIEKG-FPINKV 427
G+ A M Q G GLCK+ L EA L +M E+ FP +
Sbjct: 423 KGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP-DSY 481
Query: 428 AFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEM 487
T+L+DG+ ++G+L A L+ ++ ++I D V ++ ++G K G +D A ++ +M
Sbjct: 482 TLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM 541
Query: 488 SRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRM 547
+P +Y+ L+ C++G L EA ++ EM K + P N +I G+C+ G
Sbjct: 542 VSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNA 601
Query: 548 KPAIDAFMD-MYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA--GGLDPDITTY 604
++F++ M G VPD ++YNTLI G+ + ++ +A LV KM GGL PD+ TY
Sbjct: 602 SDG-ESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTY 660
Query: 605 NIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG-VCCDILDRXXXXXXKLLK 663
N +HG+C +M +A ++L +++ G+ P+ TY ++NG V D L ++L+
Sbjct: 661 NSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQ 720
Query: 664 MAFVPN 669
F P+
Sbjct: 721 RGFSPD 726
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 1.7e-60, P = 1.7e-60
Identities = 170/624 (27%), Positives = 290/624 (46%)
Query: 62 AAEDLRLLAQDVVTWVISRIGAGRSKHM---VEFMCDDFHL-FGSDFRVLDALLHGYLRV 117
A +DL+ DVVT+ G + + +E M + L F + +L+ G +
Sbjct: 289 AGKDLK---PDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKR 345
Query: 118 EMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTF 177
E + ++ R+ + G+ P+ L SL + + LF M +G RP++ T+
Sbjct: 346 GKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTY 405
Query: 178 NALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRM 237
+ LI FCR G + S L M + YN LIN +C G S A G
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEG------F 459
Query: 238 IFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC 297
+ +MI ++ L P VV Y +L+ GY I++A LY EM + IAP TF ++SG
Sbjct: 460 MAEMINKK-LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLF 518
Query: 298 KYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXXXXXXXXXXXKGISPSIF 357
+ G + D +L +++ + PN Y++ + G C G + KGI P +
Sbjct: 519 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTY 578
Query: 358 AFNSIIAAYSRAGLEENAFEAYKIMHQFGXXXXXXXXXXXXVGLCKKGRLPEAWDLLCKM 417
++ +I G A +H+ G C++G+L EA + +M
Sbjct: 579 SYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEM 638
Query: 418 IEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477
+++G ++ V + VL+DG + D L E++ R + PD V +++ I+ SK G
Sbjct: 639 VQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDF 698
Query: 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNII 537
EA+G++ M G VPN Y ++I G C G +NEA L +M+ +P+ T+
Sbjct: 699 KEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCF 758
Query: 538 INGFCK-QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG 596
++ K + M+ A++ + + GL+ + TYN LI G+C+ I A EL+ +M G
Sbjct: 759 LDILTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDG 817
Query: 597 LDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC-CDILDRXX 655
+ PD TY ++ C + +A + + + GI P+ V YNTL++G C + +
Sbjct: 818 VSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKAT 877
Query: 656 XXXXKLLKMAFVPNVVTTNVLLSH 679
++L+ +PN T+ S+
Sbjct: 878 ELRNEMLRQGLIPNNKTSRTTTSN 901
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 163/571 (28%), Positives = 260/571 (45%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF DM+ P PS F+ L+ + + SL M + + Y+ILIN +C
Sbjct: 68 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC 127
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q S AL + + + G P++V N+LLNG+ I A L +M
Sbjct: 128 RRSQLSLALA-------VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXX 340
PD+ TFN ++ G ++ + L+ + V G P+ Y I V GLC G +
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 341 XXXXXXXXXKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGXXXXXXXXXXXXVG 400
I P + +N+II A +A + M G
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIE+ N V F+ L+D + + G L+ A+ L++E+ +R I PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 461 AVAFSAYINGLSKAGLVDEAYGVF-LEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLE 519
+S+ ING +DEA +F L +S+ F PN YN+LI GFC +++E ++L
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 520 REMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579
REM Q+GL+ + T+ +I+GF + A F M G++PDI+TY+ L+ G C
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNN 479
Query: 580 LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTY 639
+ A + + ++PDI TYNI + G C K+ + L G+ PN VTY
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539
Query: 640 NTLMNGVCCDILDRXXXXXXKLLKMAF-VPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSE 698
T+M+G C L + +K +P+ T N L+ + G + +++
Sbjct: 540 TTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Query: 699 ISFDFDETSYKIMDRAYHNIQENAEFFQETS 729
F D ++ ++ H+ + + F + S
Sbjct: 600 CRFVGDASTIGLVTNMLHDGRLDKSFLKMLS 630
|
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 157/526 (29%), Positives = 243/526 (46%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF +M+ P PS FN L+ + + SL M D ++YNILIN +C
Sbjct: 67 LFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFC 126
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q AL G +M+ + G P++V ++LLNGY + I +A L ++M
Sbjct: 127 RRSQLPLALAVLG--KMM-----KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXX 340
+ P+ VTFN ++ G + + L+ + G P+ Y V GLC G +
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 341 XXXXXXXXXKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGXXXXXXXXXXXXVG 400
I + + +II A +A + M G
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIE+ N V F+ L+D + + G L+ A+ L++E+ +R I PD
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359
Query: 461 AVAFSAYINGLSKAGLVDEAYGVF-LEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLE 519
+S+ ING +DEA +F L +S+ F PN YN+LI GFC ++ E ++L
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELF 418
Query: 520 REMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579
REM Q+GL+ + T+N +I G + G A F M G+ PDI+TY+ L+ G CK
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Query: 580 LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTY 639
+ +A + + ++PDI TYNI + G C K+ + L G+ PN + Y
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538
Query: 640 NTLMNGVCCDILDRXXXXXXKLLKM-AFVPNVVTTNVLLSHFCKQG 684
T+++G C L + +K +PN T N L+ + G
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDG 584
|
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 157/570 (27%), Positives = 260/570 (45%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF +M+ P PS F+ L+ + + SL M + + Y+ILIN +C
Sbjct: 68 LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 127
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q AL G +M+ + G PN+V ++LLNGY ++ I +A L ++M
Sbjct: 128 RRSQLPLALAVLG--KMM-----KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXX 340
P+ VTFN ++ G + + L+ + G P+ Y + V GLC G
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 341 XXXXXXXXXKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGXXXXXXXXXXXXVG 400
+ P + +N+II + ++A +K M G
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIE+ + F+ L+D + + G L+ A+ L++E+ +R I P
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
V +S+ ING +DEA +F M P+ YN+LI GFC ++ E +++ R
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
EM Q+GL+ + T+NI+I G + G A + F +M G+ P+I+TYNTL+ G CK
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640
+ +A + + ++P I TYNI + G C K+ + L G+ P+ V YN
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540
Query: 641 TLMNGVCCDILDRXXXXXXKLLKM-AFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699
T+++G C K +K +PN N L+ + G E + +++
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSC 600
Query: 700 SFDFDETSYKIMDRAYHNIQENAEFFQETS 729
F D ++ ++ H+ + + F S
Sbjct: 601 GFAGDASTIGLVTNMLHDGRLDKSFLDMLS 630
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| TAIR|locus:2039415 AT2G16880 "AT2G16880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 154/591 (26%), Positives = 279/591 (47%)
Query: 109 ALLHGYLRV-EMSAEVME-ILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMI 166
+LL Y+R + S + +L+ + PS++ I + L G ++F+ MI
Sbjct: 99 SLLVSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKMI 158
Query: 167 HLGPRPSNYTFNALILGFCR---NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRG 223
L +P+ T N L++G R + I + M K + +N+L+N YC+ G
Sbjct: 159 RLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEG 218
Query: 224 QTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA 283
+ ALG M+ M+ E ++P+ V YN +L K + L +M+ +
Sbjct: 219 KLEDALG------MLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLV 272
Query: 284 PDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXXXXX 343
P+ VT+N +V G+CK G +++ +++ + + +LP+ Y+I + GLC AG +
Sbjct: 273 PNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLEL 332
Query: 344 XXXXXXKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF---GXXXXXXXXXXXXVG 400
+ P + +N++I GL + EA K+M Q G
Sbjct: 333 MDAMKSLKLQPDVVTYNTLIDGCFELGL---SLEARKLMEQMENDGVKANQVTHNISLKW 389
Query: 401 LCKKGRLPEAWDLLCKMIEK-GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFP 459
LCK+ + + ++++ GF + V + L+ Y ++GDL GA + E+ ++ I
Sbjct: 390 LCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKM 449
Query: 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLE 519
+ + + ++ L K +DEA+ + + GF+ + Y +LI GF K+ +AL++
Sbjct: 450 NTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMW 509
Query: 520 REMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579
EM++ + P TFN +I G C G+ + A++ F ++ +GL+PD T+N++I GYCK
Sbjct: 510 DEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKE 569
Query: 580 LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTY 639
+ +A E N+ PD T NI ++G C +A + L+ V +TVTY
Sbjct: 570 GRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTY 628
Query: 640 NTLMNGVCCDI-LDRXXXXXXKLLKMAFVPNVVTTNVLLSHFCKQGMPEKT 689
NT+++ C D L ++ + P+ T N +S + G +T
Sbjct: 629 NTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSET 679
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| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 151/525 (28%), Positives = 235/525 (44%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF M+ P PS FN L+ + + SL M + V + YNILIN +C
Sbjct: 72 LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFC 131
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q S AL G +M+ + G P++V ++LLNGY + I A L ++M
Sbjct: 132 RRSQISLALALLG--KMM-----KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXX 340
PD +TF ++ G + + L+ + G PN Y + V GLC G
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 341 XXXXXXXXXKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGXXXXXXXXXXXXVG 400
I + FN+II + + ++A +K M G
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC GR +A LL MIEK N V F L+D + + G + A+ L++++ +R I PD
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
+++ +NG +D+A +F M P+ YN+LI GFC ++ + +L R
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 424
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
EM +GL+ D T+ +I G G A F M G+ PDI+TY+ L+ G C
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640
+ +A E+ + M + DI Y + G C K++ + L G+ PN VTYN
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 544
Query: 641 TLMNGVCCD-ILDRXXXXXXKLLKMAFVPNVVTTNVLLSHFCKQG 684
T+++G+C +L K+ + +PN T N L+ + G
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 146/488 (29%), Positives = 234/488 (47%)
Query: 161 LFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
LF M+ P PS + FN L+ + + SL M + + + YNILIN +C
Sbjct: 72 LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFC 131
Query: 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280
R Q S AL G +M+ + G P++V ++LLNGY + I A L ++M
Sbjct: 132 RRSQISLALALLG--KMM-----KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 281 DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXX 340
PD +TF ++ G + + L+ + G PN Y + V GLC G +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 341 XXXXXXXXXKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGXXXXXXXXXXXXVG 400
I ++ ++++I + + E++A + M G
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
LC R +A LL MIE+ N V F L+D + + G L+ A+ L++E+ +R I PD
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364
Query: 461 AVAFSAYINGLSKAGLVDEAYGVF-LEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLE 519
+S+ ING +DEA +F L +S+ F PN YN+LI GFC +++E ++L
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLINGFCKAKRIDEGVELF 423
Query: 520 REMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579
REM Q+GL+ + T+ +I+GF + A F M G+ P+I+TYNTL+ G CK
Sbjct: 424 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 483
Query: 580 LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTY 639
+ +A + + ++P I TYNI + G C K+ + L G+ P+ + Y
Sbjct: 484 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIY 543
Query: 640 NTLMNGVC 647
NT+++G C
Sbjct: 544 NTMISGFC 551
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 170/630 (26%), Positives = 283/630 (44%)
Query: 72 DVVTWVISRIGA-GRSK---HMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEIL 127
DV +I ++GA G K ++ M D+ +F + +++ Y + + ++
Sbjct: 112 DVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFI--SIMRDYDKAGFPGQTTRLM 169
Query: 128 YRMREV-GIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186
MR V P+ + ++ + L+ + +F DM+ P+ +TF ++ FC
Sbjct: 170 LEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCA 229
Query: 187 NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEE- 245
I SLL M K+ CV + Y LI ++L KC +++E
Sbjct: 230 VNEIDSALSLLRDMTKHGCVPNSVIYQTLI----------HSLSKCNRVNEALQLLEEMF 279
Query: 246 --GLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGME 303
G P+ +N ++ G K I++A + M R APD +T+ +++G CK G ++
Sbjct: 280 LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVD 339
Query: 304 DGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLXXXXXXXXXXXXK-GISPSIFAFNSI 362
+DL P +++ + G GRL GI P + +NS+
Sbjct: 340 AA----KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSL 395
Query: 363 IAAYSRAGLEENAFEAYKIMHQFGXXXXXXXXXXXXVGLCKKGRLPEAWDLLCKMIEKGF 422
I Y + GL A E M G G CK G++ EA+++L +M G
Sbjct: 396 IYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGL 455
Query: 423 PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYG 482
N V F L+ + + + A ++ E+ R+ PD F++ I+GL + + A
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515
Query: 483 VFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC 542
+ +M G V N YN+LI F RG++ EA KL EM +G D T+N +I G C
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLC 575
Query: 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDIT 602
+ G + A F M R G P ++ N LI G C++ + A E +M G PDI
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIV 635
Query: 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCD--ILDRXXXXXXK 660
T+N ++G C ++ M +L + GI P+TVT+NTLM+ +C + D +
Sbjct: 636 TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYD-ACLLLDE 694
Query: 661 LLKMAFVPNVVTTNVLLSHFCKQGMPEKTL 690
++ FVPN T ++LL +P++TL
Sbjct: 695 GIEDGFVPNHRTWSILLQSI----IPQETL 720
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_scaffold_40000077 | hypothetical protein (726 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 783 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-30 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-32
Identities = 106/481 (22%), Positives = 201/481 (41%), Gaps = 70/481 (14%)
Query: 253 VYNALL-NGYVK-----ARDIDQANML----------YEEMRSRDIAPDAV--------- 287
YN LL +G +K D+++ +L ++ + + +A
Sbjct: 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNP 435
Query: 288 ---TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFF 344
TFN+++S ++ R+LR + +GL +C LY ++ +G++D E F
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 345 EDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404
+M G+ ++ F ++I +RAG AF AY IM + P ++L+ +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 405 GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAF 464
G + A+D+L +M + PI+ PD +
Sbjct: 556 GAVDRAFDVLAEMKAETHPID---------------------------------PDHITV 582
Query: 465 SAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ 524
A + + AG VD A V+ + Y + +G + AL + +M++
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 525 KGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVR 584
KG+ PD F+ +++ G + A + D + G+ V+Y++L+G A + +
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 585 ADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMN 644
A EL + + L P ++T N + C ++ +A +L E+ G+ PNT+TY+ L+
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL- 761
Query: 645 GVCC---DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISF 701
V D D + + ++ + PN+V + C + EK G+ + +SF
Sbjct: 762 -VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLR-RFEKACALGEPV--VSF 816
Query: 702 D 702
D
Sbjct: 817 D 817
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 3e-30
Identities = 89/418 (21%), Positives = 184/418 (44%), Gaps = 31/418 (7%)
Query: 247 LSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGD 306
+P + +N L++ ++DID A + ++ + D + ++S K G ++
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 307 RLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAY 366
+ ++ +G+ N + + G AG++ +A + M K + P FN++I+A
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 367 SRAGLEENAFEAYKIM--HQFGLTPSSCTCSSLLVGLCKKG---RLPEAWDLLCKMIEKG 421
++G + AF+ M + P T +L+ G R E + ++ + KG
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 422 FPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481
P +T+ ++ + GD A S+++++ ++ + PD V FSA ++ AG +D+A+
Sbjct: 613 TP---EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGF 541
+ + + G +Y+SL+ N +AL+L +++ L P T N +I
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 542 CKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI 601
C+ ++ A++ +M R GL P+ +TY+ L+ + D +L+++ G+ P++
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
Query: 602 TTYNI-------RMHGYC------------NIRKMNQ----AAMMLDELVSAGIVPNT 636
R C + N+ A M+ E +SAG +P
Sbjct: 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 6e-23
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 16/300 (5%)
Query: 347 MFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGR 406
+ G P + N ++ + + G+ +A + M + L + +++ GL G
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGN 204
Query: 407 LPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSA 466
EA+ L +M E G F V+L +G Q L + + + D A
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 467 YINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKG 526
I+ SK G +++A VF M V A+NS++AG+ G EAL L EMR G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 527 LLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRAD 586
+ D FTF+I+I F + ++ A A + RTG DIV L+ Y K + A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 587 ELVNKMYAGGLDP--DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMN 644
+ ++M P ++ ++N + GY N + +A M + +++ G+ PN VT+ +++
Sbjct: 381 NVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 141/616 (22%), Positives = 243/616 (39%), Gaps = 112/616 (18%)
Query: 111 LHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFK--SLLRVGDYGS-VWKLFRD-MI 166
HG L + +++L M+E+ + E A LF+ R + GS V
Sbjct: 63 SHGQL-----EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117
Query: 167 HLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY--MCVADFFAYNILINAYCIRGQ 224
LG R NA++ F R G L+H + + M D F++N+L+ Y G
Sbjct: 118 SLGVRLG----NAMLSMFVRFG------ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167
Query: 225 TSYALG----------------------KCGA------GRMIFDMIQEEGLSPNVVVYNA 256
AL CG GR + + G +V V NA
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRL---LRDLS 313
L+ YVK D+ A ++++ M RD +++N ++SG+ + G +G L +R+LS
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 314 V-------------SGLLPNCTL------------YDITVAGLC--------WAGRLDEA 340
V LL + L + + V+ +C G EA
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS-VCNSLIQMYLSLGSWGEA 342
Query: 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG 400
+ F M K ++ ++I+ Y + GL + A E Y +M Q ++P T +S+L
Sbjct: 343 EKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD 460
G L L KG V L++ Y + + A +++ + + D
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----D 454
Query: 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLER 520
+++++ I GL EA F +M + PN+ + ++ G L ++
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHA 513
Query: 521 EMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580
+ + G+ D F N +++ + + GRM A + F + D+V++N L+ GY
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHG 568
Query: 581 DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA--GIVPNTVT 638
A EL N+M G++PD T+ I + C+ M + + I PN
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTF-ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 639 YNTLMNGVCCDILDRA 654
Y ++ D+L RA
Sbjct: 628 YACVV-----DLLGRA 638
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-20
Identities = 79/322 (24%), Positives = 150/322 (46%), Gaps = 29/322 (9%)
Query: 124 MEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183
+ +L ++E G+ T L + + G +++++F +M++ G + +TF ALI
Sbjct: 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI-- 514
Query: 184 FCRNGCIRIGE-----SLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMI 238
+GC R G+ +M D +N LI+A C G+ GA
Sbjct: 515 ---DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA-C---------GQSGAVDRA 561
Query: 239 FDMIQEEG-----LSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIV 293
FD++ E + P+ + AL+ A +D+A +Y+ + +I + I V
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 294 SGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYD--ITVAGLCWAGRLDEAMEFFEDMFEKG 351
+ + G + + D+ G+ P+ + + VAG AG LD+A E +D ++G
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG--HAGDLDKAFEILQDARKQG 679
Query: 352 ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAW 411
I +++S++ A S A + A E Y+ + L P+ T ++L+ LC+ +LP+A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 412 DLLCKMIEKGFPINKVAFTVLL 433
++L +M G N + +++LL
Sbjct: 740 EVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 1e-18
Identities = 88/423 (20%), Positives = 171/423 (40%), Gaps = 57/423 (13%)
Query: 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVW 159
F DAL+ + ++ V + + + G P + + + ++ G
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 160 KLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219
+LF +M P + ++ +I G G R +L M + A+ + +++ A
Sbjct: 179 RLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA- 233
Query: 220 CIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRS 279
S LG AG+ + + + G+ + V AL++ Y K DI+ A +++ M
Sbjct: 234 ------SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
Query: 280 RDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE 339
+ V +N +++G+ +G E E
Sbjct: 288 KTT----VAWNSMLAGYALHGYSE-----------------------------------E 308
Query: 340 AMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLV 399
A+ + +M + G+S F F+ +I +SR L E+A +A+ + + G P ++ LV
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALV 367
Query: 400 GL-CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIF 458
L K GR+ +A ++ +M K N +++ L+ GY G A ++ + +
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 459 PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRI-GFVPNNFAYNSLIAGFCNRGKLNEALK 517
P+ V F A ++ +GL ++ + +F MS P Y +I G L+EA
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 518 LER 520
+ R
Sbjct: 484 MIR 486
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 9e-18
Identities = 105/505 (20%), Positives = 201/505 (39%), Gaps = 74/505 (14%)
Query: 151 RVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFF 210
+ GD S +F M PR ++NA+I G+ NG G L M + D
Sbjct: 234 KCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 211 AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQA 270
+I+A LG GR + + + G + +V V N+L+ Y+ +A
Sbjct: 290 TITSVISA-------CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 271 NMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAG 330
++ M ++D V++ ++SG+ K G + + + P+ +IT+A
Sbjct: 343 EKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPD----EITIAS 394
Query: 331 LCWA----GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFG 386
+ A G LD ++ E KG+ + N++I YS+ + A E + + +
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-- 452
Query: 387 LTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQ 446
+ +S++ GL R EA +M+ P N V L RIG L+ +
Sbjct: 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGALMCGK 509
Query: 447 SLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGF 506
+ A+ + + GF+PN +L+ +
Sbjct: 510 EI------------------------------HAHVLRTGIGFDGFLPN-----ALLDLY 534
Query: 507 CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566
G++N A + +K D ++NI++ G+ G+ A++ F M +G+ PD
Sbjct: 535 VRCGRMNYAWN-QFNSHEK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 567 VTYNTLIGGYCKALDIVRADELVNKMYAG-GLDPDITTYNIRMHGYCNIRKMNQAAMMLD 625
VT+ +L+ ++ + + E + M + P++ Y + K+ +A ++
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
Query: 626 ELVSAGIVPNTVTYNTLMNGVCCDI 650
++ I P+ + L+N C I
Sbjct: 650 KM---PITPDPAVWGALLNA--CRI 669
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 1e-17
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 249 PNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK 298
P+VV YN L++GY K +++A L+ EM+ R I P+ T++I++ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 2e-17
Identities = 24/50 (48%), Positives = 39/50 (78%)
Query: 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK 543
P+ YN+LI G+C +GK+ EALKL EM+++G+ P+ +T++I+I+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-16
Identities = 105/488 (21%), Positives = 185/488 (37%), Gaps = 82/488 (16%)
Query: 108 DALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIH 167
+A++ GY E +E+ + MRE+ + P IT + + +GD ++ ++
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 168 LGPRPSNYTFNALILGFCRNGCIRIGESLLHVMH-----KYMCVADFFAYNIL----INA 218
G N+LI + G E + M + + + N L +
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 219 YCIRGQTSYA---------------LGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263
Y + Q + + LG G + ++ + +GL VVV NAL+ Y K
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 264 ARDIDQANMLYEEMRSRDI------------------------------APDAVTFNIIV 293
+ ID+A ++ + +D+ P++VT +
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496
Query: 294 SGHCKYGGMEDGDRL----LR-DLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMF 348
S + G + G + LR + G LPN L D+ V GR++ A F +
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPN-ALLDLYVR----CGRMNYAWNQF-NSH 550
Query: 349 EKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLP 408
EK + ++N ++ Y G A E + M + G+ P T SLL + G +
Sbjct: 551 EKDVV----SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 409 EAWDLLCKMIEK-GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAY 467
+ + M EK N + ++D R G L +N +N+ I PD + A
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL---TEAYNFINKMPITPDPAVWGAL 663
Query: 468 INGL---SKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-FCNRGKLNEALKLEREMR 523
+N L + A E+ PN+ Y L+ + + GK +E ++ + MR
Sbjct: 664 LNACRIHRHVELGELAAQHIFELD-----PNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
Query: 524 QKGLLPDN 531
+ GL D
Sbjct: 719 ENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 3e-16
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 529 PDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578
PD T+N +I+G+CK+G+++ A+ F +M + G+ P++ TY+ LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-15
Identities = 47/233 (20%), Positives = 103/233 (44%), Gaps = 8/233 (3%)
Query: 172 PSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGK 231
P + T AL+ G + + + ++H+Y Y I +N+ +G +AL
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL-- 634
Query: 232 CGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNI 291
I+D ++++G+ P+ V ++AL++ A D+D+A + ++ R + I V+++
Sbjct: 635 -----SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 292 IVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG 351
++ + L D+ L P + + + LC +L +A+E +M G
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 352 ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404
+ P+ ++ ++ A R + + + G+ P+ C + GLC +
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-14
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 564 PDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN 613
PD+VTYNTLI GYCK + A +L N+M G+ P++ TY+I + G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-13
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 599 PDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC 647
PD+ TYN + GYC K+ +A + +E+ GI PN TY+ L++G+C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 459 PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN 508
PD V ++ I+G K G V+EA +F EM + G PN + Y+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-10
Identities = 75/359 (20%), Positives = 150/359 (41%), Gaps = 31/359 (8%)
Query: 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSII--AAYSRAGLEENAFEAYKI----MH 383
LC G+L++A++ E M E + A+ ++ + RA E
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA--VEEGSRVCSRALSSHP 117
Query: 384 QFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443
G+ +++L + G L AW + KM E+ + ++ VL+ GY + G
Sbjct: 118 SLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFD 169
Query: 444 GAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYG--VFLEMSRIGFVPNNFAYNS 501
A L++ + + PD F + + G+ D A G V + R GF + N+
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLR--TCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 502 LIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG 561
LI + G + A + M ++ D ++N +I+G+ + G ++ F M
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 562 LVPDIVTYNTLIGGYCKAL-DIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQA 620
+ PD++T ++I C+ L D E+ + G D++ N + Y ++ +A
Sbjct: 284 VDPDLMTITSVISA-CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 621 AMMLDELVSAGIVPNTVTYNTLMNGVCCDIL-DRAIIIAAKLLKMAFVPNVVTTNVLLS 678
+ + + V++ +++G + L D+A+ A + + P+ +T +LS
Sbjct: 343 EKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 389 PSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGY 436
P T ++L+ G CKKG++ EA L +M ++G N +++L+DG
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 70/316 (22%), Positives = 129/316 (40%), Gaps = 31/316 (9%)
Query: 388 TPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQS 447
+ S+ +S L LC G+L +A LL M E P+++ A+ L FR+ + A
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVAL----FRLCEWKRAVE 103
Query: 448 ----LWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503
+ + +A ++ + G + A+ VF +M + F++N L+
Sbjct: 104 EGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLV 159
Query: 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIIN--GFCKQGRMKPAIDAFMDMYRTG 561
G+ G +EAL L M G+ PD +TF ++ G + A + R G
Sbjct: 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA--HVVRFG 217
Query: 562 LVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAA 621
D+ N LI Y K D+V A + ++M D ++N + GY + +
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273
Query: 622 MMLDELVSAGIVPNTVTYNTLMNGVCCDIL-DR--AIIIAAKLLKMAFVPNVVTTNVLLS 678
+ + + P+ +T +++ C++L D + ++K F +V N L+
Sbjct: 274 ELFFTMRELSVDPDLMTITSVI--SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331
Query: 679 HFCKQGMPEKTLLWGQ 694
+ G WG+
Sbjct: 332 MYLSLGS------WGE 341
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 35/85 (41%)
Query: 284 PDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343
PD VT+N ++ G+CK G+++EA++
Sbjct: 1 PDVVTYNTLIDGYCK-----------------------------------KGKVEEALKL 25
Query: 344 FEDMFEKGISPSIFAFNSIIAAYSR 368
F +M ++GI P+++ ++ +I +
Sbjct: 26 FNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 354 PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK 403
P + +N++I Y + G E A + + M + G+ P+ T S L+ GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 172 PSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220
P T+N LI G+C+ G + L + M K + + Y+ILI+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 8e-08
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 210 FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263
YN LI+ YC +G+ AL +F+ +++ G+ PNV Y+ L++G K
Sbjct: 4 VTYNTLIDGYCKKGKVEEAL-------KLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 9e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 491 GFVPNNFAYNSLIAGFCNRGKLNEALKLEREMR 523
G P+ YN+LI G C G+++EA++L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 9e-08
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592
GL PD+VTYNTLI G C+A + A EL+++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 60/248 (24%)
Query: 125 EILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184
E+ + E I + TI S + GD+ ++ DM G +P F+AL+
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV--- 656
Query: 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244
D G G F+++Q+
Sbjct: 657 -----------------------D-------------------VAGHAGDLDKAFEILQD 674
Query: 245 ---EGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301
+G+ V Y++L+ A++ +A LYE+++S + P T N +++ C
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC---- 730
Query: 302 MEDGDRLLRDLSV------SGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS 355
+G++L + L V GL PN Y I + D ++ E GI P+
Sbjct: 731 --EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 356 IFAFNSII 363
+ I
Sbjct: 789 LVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 1e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 525 KGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557
KGL PD T+N +I+G C+ GR+ A++ +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 427 VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473
V + L+DGY + G + A L+NE+ +R I P+ +S I+GL K
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 137 PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186
P L + G KLF +M G +P+ YT++ LI G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA 286
V YN L++G KA +++A L++EM+ R I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 35/68 (51%)
Query: 280 RDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE 339
+ + PD VT+N ++ G C+ AGR+DE
Sbjct: 1 KGLKPDVVTYNTLIDGLCR-----------------------------------AGRVDE 25
Query: 340 AMEFFEDM 347
A+E ++M
Sbjct: 26 AVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 246 GLSPNVVVYNALLNGYVKARDIDQANMLYEEMR 278
GL P+VV YN L++G +A +D+A L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGL 527
YNSLI+G+C GKL EAL+L +EM++KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 385 FGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKM 417
GL P T ++L+ GLC+ GR+ EA +LL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 532 FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566
T+N +I+G CK GR++ A++ F +M G+ PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDI 282
V YN+L++GY KA +++A L++EM+ + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS 488
+ + PD V ++ I+GL +AG VDEA + EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPIN 425
T ++L+ GLCK GR+ EA +L +M E+G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 567 VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI 601
VTYNTLI G CKA + A EL +M G++PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPD 530
YN+LI G C G++ EAL+L +EM+++G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 251 VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAP 284
+ YNALL KA D D A + EEM++ + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636
TYN + G C ++ +A + E+ GI P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 631 GIVPNTVTYNTLMNGVCCD-ILDRAI 655
G+ P+ VTYNTL++G+C +D A+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422
T +SL+ G CK G+L EA +L +M EKG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 567 VTYNTLIGGYCKALDIVRADELVNKM 592
VTYN+LI GYCKA + A EL +M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGF 492
V +++ I+G KAG ++EA +F EM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 356 IFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP 389
+ +N+++ A ++AG + A + M GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 169 GPRPSNYTFNALILGFCRNGCIRIGESLLHVM 200
G +P T+N LI G CR G + LL M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLP 529
YN+L+ G + AL + EM+ GL P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.66 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.35 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.98 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.95 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.84 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.55 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.26 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.25 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.25 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.24 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.19 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.98 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.94 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.82 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.72 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.69 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.68 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.63 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.58 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.56 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.56 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.49 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.45 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.38 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.35 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.34 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.33 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.22 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.18 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.12 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.1 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.04 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.8 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.63 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.56 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.54 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.54 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.45 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.42 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.0 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.99 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.99 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.92 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.9 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.71 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.52 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.24 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.94 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.9 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.79 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.6 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.48 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.24 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.19 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.16 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.03 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.5 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.47 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.42 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.12 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.07 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.44 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.36 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.36 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.35 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.32 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.12 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.93 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.22 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.18 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.17 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.91 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.58 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.48 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.44 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.67 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.66 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 88.48 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.34 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.39 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.51 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.88 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.87 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.84 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.15 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.97 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.92 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.66 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.57 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.54 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.43 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.65 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.36 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.13 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.97 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.89 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 81.54 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.18 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.95 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-84 Score=757.35 Aligned_cols=663 Identities=19% Similarity=0.242 Sum_probs=605.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHhhccCCCCCHHHHH
Q 039931 29 LETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLD 108 (783)
Q Consensus 29 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (783)
...++.|+.+|..+...+..+....+..+.+...+.+....+..++. .+... +..++..++|
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----------------~~~~~--~~~~~~~~~n 125 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS----------------RALSS--HPSLGVRLGN 125 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHH----------------HHHHc--CCCCCchHHH
Confidence 34667888888887755443333333333332222222222222222 22221 2246678999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
.|+.+|++.|+++.|.++|++|. .||..+||.++.+|++.|++++|+++|++|...|+.||.+||++++++|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999997 47889999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 039931 189 CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID 268 (783)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 268 (783)
++..+.+++..|.+.|+.||..++|+||.+|++.|++++| +++|++|++ ||+++||++|.+|++.|+++
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A-------~~lf~~m~~----~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA-------RLVFDRMPR----RDCISWNAMISGYFENGECL 270 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH-------HHHHhcCCC----CCcchhHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999 789999975 79999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 269 QANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMF 348 (783)
Q Consensus 269 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (783)
+|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 039931 349 EKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVA 428 (783)
Q Consensus 349 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (783)
. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+
T Consensus 351 ~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 4 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN 508 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 508 (783)
+++|+++|++.|++++|.++|++|.+ +|.++|+++|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999976 4889999999999999999999999999986 589999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 039931 509 RGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADEL 588 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 588 (783)
.|+++.+.+++..+.+.|+.+|..++|+||++|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.++|.++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 58999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCC
Q 039931 589 VNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV-SAGIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAF 666 (783)
Q Consensus 589 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~ 666 (783)
|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+++++++++ |++++|.+++++| ++
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~ 653 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PI 653 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CC
Confidence 9999999999999999999999999999999999999999 68999999999999999997 8999999999887 57
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh--hHHHHHH-HHHHhcCCCcchhhhHH
Q 039931 667 VPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI--QENAEFF-QETSEKSLFLDFLMGCM 742 (783)
Q Consensus 667 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~--~~~~~~~-~~~~~~~~~~~~~~~~~ 742 (783)
.||..+|++|+.+|..+|+.+.|....+++.+++|+ +...|..|+++|+.. +++.... +.|.++++..+|..+.+
T Consensus 654 ~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 654 TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 899999999999999999999999999999999987 889999999999764 3444444 45778888877765554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-80 Score=725.69 Aligned_cols=638 Identities=19% Similarity=0.250 Sum_probs=602.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
+.+++..+|..++.+|.+.+.++.|.+++..+.+.|..++...+|.|+..|++.|+++.|+++|++| ++||..+||
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m----~~~d~~~~n 156 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM----PERDLFSWN 156 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcC----CCCCeeEHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999999 568999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
++|.+|++.|++++|+++|++|.+.|+.||.+||+.++++|++.++++.+ ++++..|.+.|+.||+.+||+||
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG-------REVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH-------HHHHHHHHHcCCCcccchHhHHH
Confidence 99999999999999999999999999999999999999999999988777 78999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (783)
.+|++.|++++|.++|++|.+ ||.++|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.++++.|+++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 999999999999999999964 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4789999999999999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA 498 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 498 (783)
+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.||++|++.|++++|.++|++|.+ +|.++
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs 457 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVIS 457 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 78899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
|+++|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+|..++++||++|++
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999986 59999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILDRAIII 657 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~A~~~ 657 (783)
.|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||.+||++++.+|++ |.+++|.++
T Consensus 537 ~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred cCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 99999999999987 589999999999999999999999999999999999999999999999886 899999999
Q ss_pred HHHHH-HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcc
Q 039931 658 AAKLL-KMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLD 736 (783)
Q Consensus 658 ~~~~~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 736 (783)
|++|. +.|+.|+..+|++++++|++.|++++|.+++++|. .+||..+|..|+.+| ..+++.+.++.+.++.++++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhC
Confidence 99999 68999999999999999999999999999998873 457899999999986 55888999998888888877
Q ss_pred hhhhHHHHhhhhhhhhhhhhhhHHHhhhhhhhcc
Q 039931 737 FLMGCMTLNVTGDFCVQSMKLQTAAIGRRGRKAA 770 (783)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (783)
|.....-+ ..+.+|.+.|.++.+..-.+..+..
T Consensus 688 p~~~~~y~-ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 688 PNSVGYYI-LLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCCcchHH-HHHHHHHHCCChHHHHHHHHHHHHc
Confidence 75544322 2456888889999888776555443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-73 Score=647.86 Aligned_cols=546 Identities=18% Similarity=0.245 Sum_probs=505.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGI-MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
.+...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|..++|+.+|+.|. .||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHH
Confidence 4556788888999999999999999999999996 4677788899999999999999999999994 4999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
+.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++| .++|++|.+.|+.||..+|+++|.+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A-------~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM-------FEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHhcCCHH
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSV--SGLLPNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~ 338 (783)
|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999986 578999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
+|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA 498 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 498 (783)
+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|. +++++|..+.+.+..-. + ......
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~ 824 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIE 824 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccc
Confidence 99999999999999999999999999999999999999996654 35666666655444211 0 011111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIA 658 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~ 658 (783)
.+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++|++++. ..++|..++
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~ 903 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLL 903 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHH
Confidence 2334679999999999999999999999999999999999999999999888899999999999999743 347899999
Q ss_pred HHHHHcCCCCCHH
Q 039931 659 AKLLKMAFVPNVV 671 (783)
Q Consensus 659 ~~~~~~~~~p~~~ 671 (783)
++|...|+.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 9999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=633.47 Aligned_cols=546 Identities=17% Similarity=0.262 Sum_probs=494.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP-RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|..++|..+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 56777888999999999999999999999999885 46778888999999999999999999998873 99999999
Q ss_pred HHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 039931 215 LINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVS 294 (783)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 294 (783)
++.+|++.|++++| .++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.
T Consensus 443 LL~a~~k~g~~e~A-------~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 443 LMSVCASSQDIDGA-------LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHhCcCHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999988 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCH
Q 039931 295 GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFE--KGISPSIFAFNSIIAAYSRAGLE 372 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~ 372 (783)
+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999986 67899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 373 ENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNEL 452 (783)
Q Consensus 373 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (783)
++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 453 NRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNF 532 (783)
Q Consensus 453 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 532 (783)
.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYC 612 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 612 (783)
||+.++.+|++.|++++|.++|.+|.+.|+.||..+|++++..|. +++++|.++.+.+... .+ .....
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~--------g~~~~ 823 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS--------GRPQI 823 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc--------ccccc
Confidence 999999999999999999999999999999999999999986654 2566766665554431 00 11122
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 613 NIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLL 691 (783)
Q Consensus 613 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 691 (783)
..+..++|..+|++|++.|+.||..||+.++.+++. +..+.+..++++|...+..|+..+|+++++++++. .++|+.
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~ 901 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFS 901 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHH
Confidence 234457799999999999999999999999976665 67788888888888888899999999999998543 368999
Q ss_pred HHHHHhhcCCCCCHH
Q 039931 692 WGQKLSEISFDFDET 706 (783)
Q Consensus 692 ~~~~~~~~~~~~d~~ 706 (783)
++++|.+.+..|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 999999998887764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=592.88 Aligned_cols=512 Identities=19% Similarity=0.291 Sum_probs=473.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLG-PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
..+..+|+.++..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4456689999999999999999999999998765 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 039931 215 LINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVS 294 (783)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 294 (783)
|+++|++.|++++| .++|++|++ ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 164 Li~~y~k~g~~~~A-------~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 164 VLLMHVKCGMLIDA-------RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHhcCCCHHHH-------HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 99999999999998 789999975 8999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 039931 295 GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 374 (783)
+|++.|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.. +|+++||+||.+|++.|++++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999975 599999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 375 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|++.|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ-KGLLPDNFT 533 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~p~~~~ 533 (783)
||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+
T Consensus 389 ----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 389 ----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred ----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 599999999999999999999999999999999999999999999999999999999999999986 599999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYC 612 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~ 612 (783)
|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.|..+++++.+ +.| +..+|+.++++|+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN 539 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence 999999999999999999999876 5789999999999999999999999999999975 566 4679999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH-------HH-----HhhccHHHHHHHHHHHHHcCCCCCHH
Q 039931 613 NIRKMNQAAMMLDELVSAGIVPN-TVTYNTLM-------NG-----VCCDILDRAIIIAAKLLKMAFVPNVV 671 (783)
Q Consensus 613 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li-------~~-----~~~~~~~~A~~~~~~~~~~~~~p~~~ 671 (783)
+.|++++|.+++++|.+.|+.+. ..+|..+. .+ ...+.+++..++..+|.+.|+.||..
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999998643 23442221 11 01123456667778889999999854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=568.39 Aligned_cols=476 Identities=20% Similarity=0.277 Sum_probs=453.6
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 039931 248 SPNVVVYNALLNGYVKARDIDQANMLYEEMRSRD-IAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDI 326 (783)
Q Consensus 248 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 326 (783)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039931 327 TVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGR 406 (783)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 406 (783)
++.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999974 79999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 039931 407 LPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
.+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|++|.. +|+++||++|.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 4999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039931 487 MSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566 (783)
Q Consensus 487 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 566 (783)
|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4899
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS-AGIVPNTVTYNTLMNG 645 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~ 645 (783)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+ .|+.|+..+|++++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 7999999999999999
Q ss_pred Hhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh---hHH
Q 039931 646 VCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI---QEN 721 (783)
Q Consensus 646 ~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~---~~~ 721 (783)
+++ |++++|.+++++ .++.||..+|++++.+|+.+|+++.|..+++++.+++|+ +..+|..|+++|+.. .++
T Consensus 472 l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHH
Confidence 997 899999999876 468899999999999999999999999999999999986 788999999999864 467
Q ss_pred HHHHHHHHhcCCCcchhh
Q 039931 722 AEFFQETSEKSLFLDFLM 739 (783)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~ 739 (783)
.+..++|.++++...|..
T Consensus 548 ~~v~~~m~~~g~~k~~g~ 565 (697)
T PLN03081 548 AKVVETLKRKGLSMHPAC 565 (697)
T ss_pred HHHHHHHHHcCCccCCCe
Confidence 777777888888766544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=371.96 Aligned_cols=706 Identities=14% Similarity=0.047 Sum_probs=445.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhh---------------cCCchHHHHHHH
Q 039931 29 LETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRI---------------GAGRSKHMVEFM 93 (783)
Q Consensus 29 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 93 (783)
..+++.|..+|+-+...++. ....+..++.++...+.+..|..++...+... ..+........+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 216 (899)
T TIGR02917 138 LGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45677777777776543322 12334444555555554455544443332211 111222333333
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039931 94 CDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS 173 (783)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~ 173 (783)
.......|.++.++..++..+...|++++|...++.+.+.. +.+...+......+...|++++|...|+++.+.++. +
T Consensus 217 ~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~ 294 (899)
T TIGR02917 217 RKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-Y 294 (899)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-c
Confidence 33333345666777777777777777777777777777664 233334444445556677777777777777766542 2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHH
Q 039931 174 NYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVV 253 (783)
Q Consensus 174 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~ 253 (783)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++| ...+..+.+... .+...
T Consensus 295 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A-------~~~~~~~~~~~~-~~~~~ 365 (899)
T TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA-------IATLSPALGLDP-DDPAA 365 (899)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH-------HHHHHHHHhcCC-CCHHH
Confidence 3344445566667777777777777776653 34556666777777777777777 455666554432 35667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
++.+...+.+.|++++|.+.|+++.+... .+...+..+...+...|+.++|.+.++.+.+.... .......++..+.+
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHh
Confidence 77777788888888888888888776532 24556666667777777777777777777665432 22344455666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
.|++++|..+++++.... +++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 444 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777776643 2356677777777777777777777777776653 23445566667777777777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
++++.+... .+..++..+...+.+.|+.++|...++++.+.+.. +...+..++..+.+.|++++|..+++.+.+.. +
T Consensus 522 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 777776643 35666777777777777777777777777665432 55566667777777777777777777776542 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
.+..+|..+...+.+.|++++|...|+++.+.... +...+..+...+.+.|++++|...++++.+.. +.+..++..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45666777777777777777777777777665432 55666677777777777777777777776642 23466677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILD 652 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~ 652 (783)
..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+++.+.+ |+..++..+...+.. |+.+
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 77777777777777777776643 3455666666777777777777777777776532 444444445544443 6677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcC
Q 039931 653 RAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKS 732 (783)
Q Consensus 653 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 732 (783)
+|.+.++++++.. +.+...+..+...|.+.|++++|.++++++.+..|+ ++.+++.++++|...++ ..+.++++++
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~--~~A~~~~~~~ 829 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD--PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc--HHHHHHHHHH
Confidence 7777777666532 234455666666666777777777777777776665 66667777766655333 4455566665
Q ss_pred CCcchhhhHHHHhhhhhhhhhhhhhhHHHhh
Q 039931 733 LFLDFLMGCMTLNVTGDFCVQSMKLQTAAIG 763 (783)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (783)
+...|..... ...+|..+.+.|+.+.|...
T Consensus 830 ~~~~~~~~~~-~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 830 LKLAPNIPAI-LDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HhhCCCCcHH-HHHHHHHHHHcCCHHHHHHH
Confidence 5554433222 23355566665655555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=372.57 Aligned_cols=711 Identities=13% Similarity=0.021 Sum_probs=559.2
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhh---------------cCCchHHH
Q 039931 25 VMKLLETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRI---------------GAGRSKHM 89 (783)
Q Consensus 25 ~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 89 (783)
+.....+++.|+..+..+...++. ....+...++++...+.+..|...+...+... ..+....+
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 168 LALAENRFDEARALIDEVLTADPG-NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344556888899999887643332 23344555666666666666655554433221 11112222
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 90 VEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
...+.......|.++..+......+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|+++.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 222222222334455555566667788899999999999998876 2334556667778889999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
| .+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++| .+.|+++.+... .
T Consensus 326 p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~~~~~~~-~ 395 (899)
T TIGR02917 326 P-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA-------AEYLAKATELDP-E 395 (899)
T ss_pred C-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHhcCC-C
Confidence 5 567778888899999999999999999998765 46778889999999999999988 567777766543 3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVA 329 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 329 (783)
+...+..+...+...|++++|.+.|+.+.+.+.. +......++..+.+.|++++|.++++.+.... +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 6677888889999999999999999999876543 34556667788899999999999999988753 346778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
.+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999886443 66778888999999999999999999998865 3467788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
|...++++.+.+. .+...+..++..+.+.|++++|..+++.+.+... .+...|..+...+.+.|++++|...|+.+.+
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988754 3677888899999999999999999999987643 3778899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTY 569 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 569 (783)
.. +.+...+..+...+.+.|++++|...++++.+..+. +..++..++..+...|++++|..+++.+.+.+ +++...+
T Consensus 630 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 630 LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 64 446777888999999999999999999999887433 67889999999999999999999999998764 4577788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-
Q 039931 570 NTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC- 648 (783)
Q Consensus 570 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~- 648 (783)
..+...+...|++++|.+.++++... .|+..++..++.++.+.|++++|.+.++++++.. ..+...+..+...+..
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 88899999999999999999999874 4666788888999999999999999999998742 2345566666666664
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
|+.++|.+.++++++.. +++..++..+...+.+.|+ ++|+.+++++.++.|+ ++.++..++.+|.. .++.+.+.+.
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~A~~~ 859 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVE-KGEADRALPL 859 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH-cCCHHHHHHH
Confidence 89999999999998853 3466788888889999999 8899999999999887 77888888888765 5667777777
Q ss_pred HhcCCCcchhhhHHHHhhhhhhhhhhhhhhHHHhhh
Q 039931 729 SEKSLFLDFLMGCMTLNVTGDFCVQSMKLQTAAIGR 764 (783)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (783)
+++++..+|.... ....++..+.+.|..++|...-
T Consensus 860 ~~~a~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 860 LRKAVNIAPEAAA-IRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777665333 3334788899999999887764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-26 Score=275.52 Aligned_cols=588 Identities=12% Similarity=-0.001 Sum_probs=308.1
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhc
Q 039931 89 MVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAI----------------TILFKSLLRV 152 (783)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~----------------~~ll~~l~~~ 152 (783)
+-+.+.+.....|.++.++..++..+.+.|+.++|.+.++++.+.. +.+.... ..+.+.+.+.
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~ 125 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATT 125 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3344444444556778888888888888888888888888888876 3333332 2334467778
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhc
Q 039931 153 GDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKC 232 (783)
Q Consensus 153 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (783)
|++++|.+.|+.+.+.++.................|+.++|++.++++.+.. +.+...+..+...+...|+.++|
T Consensus 126 g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA---- 200 (1157)
T PRK11447 126 GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG---- 200 (1157)
T ss_pred CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH----
Confidence 8888888888888776553222222222222234578888888888887764 44566777777888788888777
Q ss_pred cchHHHHHHHHHCCCCCC--hHHH-----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 039931 233 GAGRMIFDMIQEEGLSPN--VVVY-----------------NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIV 293 (783)
Q Consensus 233 ~~a~~~~~~m~~~g~~p~--~~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 293 (783)
...++++.+...... ...| ...+..+-.....+.|...+.++......|+... ....
T Consensus 201 ---l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 201 ---FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred ---HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 466777654311000 0001 1111111111122333444443333222222111 1223
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH------------
Q 039931 294 SGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS-IFAFN------------ 360 (783)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~------------ 360 (783)
..+...|++++|...|++..+... .+...+..+...|.+.|++++|+..|++..+..+... ...|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 344556666666666666665432 1445555566666666666666666666655432211 11111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIG 440 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 440 (783)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 11234455666666666666666543 223444555556666666666666666666655322 3444444555443 34
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 039931 441 DLIGAQSLWNELNRRKIF--------PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL 512 (783)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 512 (783)
+.++|...++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 556666655544322100 001123334455555666666666666665542 22344455555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH---------HHHHHHHHHHcCCHH
Q 039931 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT---------YNTLIGGYCKALDIV 583 (783)
Q Consensus 513 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---------~~~li~~~~~~g~~~ 583 (783)
++|...++++.+..+. ++..+..+...+...|+.++|...++.+......++... +..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 6666666666554322 333333333444556666666666655443222222111 122344455566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh-ccHHHHHHHHHHH
Q 039931 584 RADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVCC-DILDRAIIIAAKL 661 (783)
Q Consensus 584 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~-~~~~~A~~~~~~~ 661 (783)
+|.++++. .+++...+..+...+.+.|++++|++.|++.++. .|+ ...+..+...+.. |+.++|.+.++++
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666551 1234445555566666666666666666666552 233 2334444444333 5666666666655
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCC
Q 039931 662 LKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISF 701 (783)
Q Consensus 662 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 701 (783)
.+ ..|+ ..++..+...+...|++++|.+.++++++..+
T Consensus 664 l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 664 PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 54 2333 23344455555566666666666666665443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-25 Score=270.44 Aligned_cols=573 Identities=10% Similarity=-0.025 Sum_probs=416.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESA-ITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRN 187 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (783)
.+.+.+.+.|++++|++.|+++.+.+ +|+... ...........|+.++|++.|+++++..| .+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHcc
Confidence 34557889999999999999999875 344321 11112222346999999999999999876 5777888999999999
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhc-------------cchHHHHHHHHHCCCCCChHHH
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKC-------------GAGRMIFDMIQEEGLSPNVVVY 254 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-------------~~a~~~~~~m~~~g~~p~~~~~ 254 (783)
|+.++|+..++++.+.. ..+..............+....+...+ ..+...+.........|+...
T Consensus 195 g~~~eAl~~l~~~~~~~-~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~- 272 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSP-AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA- 272 (1157)
T ss_pred CCHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-
Confidence 99999999999997642 111111111111111112222221111 122333443333222233222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HHHH---------
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN-CTLY--------- 324 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~--------- 324 (783)
..+...+...|++++|+..|++.++.... +...+..+...+.+.|++++|...|++..+...... ...+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 23456678899999999999999987433 778899999999999999999999999988654322 1112
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 325 ---DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 325 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
......+.+.|++++|...|++..+..+. +...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 12244577899999999999999997544 67788889999999999999999999999864 23456666777766
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFP--------INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
. .++.++|...++.+...... .....+..+...+...|++++|++.|++..+..+. +...+..+...|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4 56789999988776543211 01223556777888999999999999999987654 67778889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---------HHHHHHHHHhc
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT---------FNIIINGFCKQ 544 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---------~~~li~~~~~~ 544 (783)
.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++... +..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999998753 33455555555567789999999999998765543333322 23456778899
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMM 623 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 623 (783)
|+.++|..+++. .+++...+..+...+.+.|++++|++.+++..+. .| +...+..++..|...|++++|.+.
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999872 2456677888999999999999999999999984 45 678899999999999999999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHh-hccHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 039931 624 LDELVSAGIVPNTV-TYNTLMNGVC-CDILDRAIIIAAKLLKMAF--VP---NVVTTNVLLSHFCKQGMPEKTLLWGQKL 696 (783)
Q Consensus 624 ~~~m~~~g~~p~~~-~~~~li~~~~-~~~~~~A~~~~~~~~~~~~--~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 696 (783)
++...+. .|+.. .+..+...+. .|+.++|.+++++++...- .| +...+..+...+...|++++|+..++++
T Consensus 660 l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 660 LAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9988763 45543 3344444443 3899999999999887421 12 2245666677889999999999999999
Q ss_pred hhcC
Q 039931 697 SEIS 700 (783)
Q Consensus 697 ~~~~ 700 (783)
+...
T Consensus 738 l~~~ 741 (1157)
T PRK11447 738 MVAS 741 (1157)
T ss_pred Hhhc
Confidence 7533
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-24 Score=226.81 Aligned_cols=542 Identities=12% Similarity=0.060 Sum_probs=368.5
Q ss_pred cccccccccccchHHHHHHHH-hcCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHH------
Q 039931 7 GYILKAFSQKFCPYFLVKVMK-LLETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVIS------ 79 (783)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------ 79 (783)
-|||++.+.++.+.++.++|. ..+|+..||.||+.+.+.++.+......+++|||+..++...|...+...+.
T Consensus 154 ~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v 233 (1018)
T KOG2002|consen 154 HFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV 233 (1018)
T ss_pred HHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH
Confidence 379999999999999999998 6789999999999988777777778888999999998776666544432211
Q ss_pred ------------hhcCCchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 039931 80 ------------RIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITIL 145 (783)
Q Consensus 80 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l 145 (783)
..........++.+...+...+.||++.+.|.+.|...|++..+..+...+........ ..+|..+
T Consensus 234 ~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 234 SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 11122334566777777777889999999999999999999999999999887642222 3458899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 039931 146 FKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQT 225 (783)
Q Consensus 146 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (783)
.+++...|++++|..+|.+..+..+.-.+..+--++..+.+.|+++.+...|++..+.. +.+..+...|...|...+.-
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 99999999999999999999887654335667788999999999999999999998864 55667888888888877522
Q ss_pred chHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHhHHHHHHHHHHccCC
Q 039931 226 SYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMR----SRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 226 ~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
.+.. +.|..++.+..+.- ..|...|-.+...+-+.. ...++..|.... ..+-.+.....|.+...+...|+
T Consensus 393 ~~~~---d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 393 QEKR---DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred hHHH---HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 2221 23355666555543 237778888877776554 444477776654 44555778889999999999999
Q ss_pred hhHHHHHHHHHHhC---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 039931 302 MEDGDRLLRDLSVS---GLLPNC------TLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSI-FAFNSIIAAYSRAGL 371 (783)
Q Consensus 302 ~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~ 371 (783)
+++|...|...... ...++. .+--.+...+-..++.+.|.+.+..+.+. .|+- ..|--+.......++
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccC
Confidence 99999999888765 122222 22223444555667788888888888775 2332 223333322233466
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHh------------
Q 039931 372 EENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF-PINKVAFTVLLDGYFR------------ 438 (783)
Q Consensus 372 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~------------ 438 (783)
..+|...++...+.+ ..+...++.+...+.+..++..|.+-|+.+.+.-. .+|+++.-+|.+.|.+
T Consensus 546 ~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 546 LYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred cHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 777888877777654 33555666666677777777777776666655422 2466666666665542
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 439 IGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKL 518 (783)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 518 (783)
.+..++|+++|.++++..+. |...-|-+.-.++..|++.+|..+|.+..+... -+..+|..+.++|..+|++..|+++
T Consensus 625 kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 23455666666666655443 555555555566666666666666666665431 2334455566666666666666666
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 519 EREMRQK-GLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 519 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
|+...+. ....++...+.|..++.+.|++.+|.+.+.....
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6654433 3333555566666666666666666666555554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-22 Score=229.50 Aligned_cols=580 Identities=12% Similarity=-0.012 Sum_probs=303.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESL 196 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 196 (783)
.|++++|+..|+++++.. +.+..++..|...|.+.|++++|+..+++.++..| .|...+..+ ..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHHHH
Confidence 377777777777777776 34466677777777777777777777777777654 444444443 222 777777777
Q ss_pred HHHHHhCCCCCCHHhHHHHHHH--------HHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHH-HHHHHhcCCh
Q 039931 197 LHVMHKYMCVADFFAYNILINA--------YCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNAL-LNGYVKARDI 267 (783)
Q Consensus 197 ~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~ 267 (783)
++++.+.. +.+..++..+... |.+.+ +| ...++ .......|+..+.... ...|.+.|++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~e---qA-------l~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLP---VA-------RAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHH---HH-------HHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 77777654 3334444444444 44443 23 22333 2222233334433333 6777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc-cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 268 DQANMLYEEMRSRDIAPDAVTFNIIVSGHCK-YGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFED 346 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (783)
++|++++.++.+.++. +..-...+..+|.. .++ +.+..+++. .+..+......+...|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7777777777776543 33445555556665 355 666665442 2234666777777777777777777777777
Q ss_pred HHHCCCC-CCHHHHH------------------------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 039931 347 MFEKGIS-PSIFAFN------------------------------SIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCS 395 (783)
Q Consensus 347 m~~~g~~-p~~~~~~------------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 395 (783)
+...... |...+|- .++..+.+.++++.+.++.. +.|....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-- 344 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--
Confidence 6543221 2222221 11344445555554443311 2222222
Q ss_pred HHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 039931 396 SLLVGL--CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR-K-IFPDAVAFSAYINGL 471 (783)
Q Consensus 396 ~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~p~~~~~~~li~~~ 471 (783)
..++.. ...+...++.+.+..|.+... -+....--+.....+.|+.++|.++|+..... + ..++....+-++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 122211 122444455555555554421 13334444444455566666666666665442 1 112233333455555
Q ss_pred HccCC---hHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 472 SKAGL---VDEAYGV----------------------FLEMSRI-GF-VP--NNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 472 ~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+.+. ..++..+ ....... +. ++ +...|..+..++.. ++.++|...+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 55444 2222222 1111100 01 22 34445555555544 5666666655555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-I 601 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 601 (783)
... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|..++++..+.. |+ .
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~ 576 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDN 576 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccH
Confidence 544 234333223333344566666666666665442 3444445555555666666666666666666532 32 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 039931 602 TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSH 679 (783)
Q Consensus 602 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~ 679 (783)
..+..+.......|++++|...+++.++ +.|+...|..+...+.. |+.++|...++++++ ..|+. ..++.+...
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 2233333333444666666666666654 23444444444443333 566666666666666 33533 344455555
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHH
Q 039931 680 FCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCM 742 (783)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (783)
+...|+.++|+..+++++++.|+ ++..+..++.+|.. .++.+.++..+++++.++|....+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~-lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQR-LDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCchh
Confidence 66666666666666666666665 56666666666544 455566666666666665544443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-21 Score=224.41 Aligned_cols=612 Identities=11% Similarity=0.009 Sum_probs=435.5
Q ss_pred CCchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 83 AGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLF 162 (783)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~ 162 (783)
.+....+++.+.......|.++.++..|+..|.+.|++++|+..+++..+.+ +.|...+..+ ..+ +++.+|..+|
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHH
Confidence 3555677888877777788889999999999999999999999999999986 3344444443 333 9999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHH--------HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCCcchHhhhcc
Q 039931 163 RDMIHLGPRPSNYTFNALILG--------FCRNGCIRIGESLLHVMHKYMCVADFFAYNIL-INAYCIRGQTSYALGKCG 233 (783)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 233 (783)
+++.+..| .+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|
T Consensus 132 e~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A----- 201 (987)
T PRK09782 132 EELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA----- 201 (987)
T ss_pred HHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH-----
Confidence 99999876 455555555554 5555 44554444 3222223445544444 8999999999888
Q ss_pred chHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 234 AGRMIFDMIQEEGLSPNVVVYNALLNGYVK-ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 234 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
..++.++.+.+.. +..-...|...|.+ .++ +++..+++.. ++-+...+..+...+.+.|+.++|.++++++
T Consensus 202 --i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 202 --DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred --HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6788999887644 45557777788888 477 8888886642 3357888999999999999999999999987
Q ss_pred HhCCCC-CcHHHH------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 313 SVSGLL-PNCTLY------------------------------DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNS 361 (783)
Q Consensus 313 ~~~~~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 361 (783)
...... |...++ -.++..+.+.++++.+.++.. +.|.....
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-- 345 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML-- 345 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--
Confidence 654222 222222 112445566666665554422 23333322
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHH
Q 039931 362 IIAAY--SRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK-G-FPINKVAFTVLLDGYF 437 (783)
Q Consensus 362 li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~ 437 (783)
.+... ...+...++...++.|.+.. +-+....-.+.-...+.|+.++|.++++..... + ..++....+.++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 22222 23466777777777777652 225555555555677899999999999998873 1 2335556667888888
Q ss_pred hcCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 039931 438 RIGD---LIGAQSL----------------------WNELNRR-KI-FP--DAVAFSAYINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 438 ~~g~---~~~A~~~----------------------~~~~~~~-~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 488 (783)
+.+. ...+..+ .+..... +. .+ +...|..+...+.. ++.++|...+.+..
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 7766 3333222 1111111 11 23 56777888877776 89999999888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 039931 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT 568 (783)
Q Consensus 489 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 568 (783)
.. .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+++.++.. +++...
T Consensus 504 ~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l 578 (987)
T PRK09782 504 QR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNAL 578 (987)
T ss_pred Hh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHH
Confidence 65 477655445555667899999999999998665 3445556677888899999999999999999864 223334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHh
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVT-YNTLMNGVC 647 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~ 647 (783)
+..+.......|++++|...+++..+ +.|+...|..+..++.+.|++++|+..+++.++ ..|+... ++.+...+.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 44444455566999999999999997 568888999999999999999999999999987 4576644 444444455
Q ss_pred h-ccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHH
Q 039931 648 C-DILDRAIIIAAKLLKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFF 725 (783)
Q Consensus 648 ~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~ 725 (783)
. |+.++|+..++++++ ..|+ ...+..+..++...|++++|+..+++++++.|+ +..+....++.... +.+++.+
T Consensus 655 ~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~-~~~~~~a 730 (987)
T PRK09782 655 DSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQ-RFNFRRL 730 (987)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHH-HHHHHHH
Confidence 4 899999999999998 4564 477888988999999999999999999999987 66666666766533 5677777
Q ss_pred HHHHhcCCCcchhhh
Q 039931 726 QETSEKSLFLDFLMG 740 (783)
Q Consensus 726 ~~~~~~~~~~~~~~~ 740 (783)
.+.++++...++...
T Consensus 731 ~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 731 HEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHhhcCccch
Confidence 777777777666443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-18 Score=183.30 Aligned_cols=575 Identities=13% Similarity=0.042 Sum_probs=414.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHV 199 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 199 (783)
++.|.+.|...++.. ++++-..-.-.......|++..|+.+|..++...|.--+...-.+..++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 589999999998875 4555544444444556789999999999988766543333344556777899999999999999
Q ss_pred HHhCCCCCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 200 MHKYMCVAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 200 m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 278 (783)
..+.. |+ +.++..|.-.-....+. + .++.|..++........ -|+++.+.|...|.-.|++..++.+...+.
T Consensus 225 alqLd--p~~v~alv~L~~~~l~~~d~-~---s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 225 ALQLD--PTCVSALVALGEVDLNFNDS-D---SYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHhcC--hhhHHHHHHHHHHHHHccch-H---HHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99764 42 22332222211111221 1 12334555555544332 378889999999999999999999999988
Q ss_pred hCCCC--CCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 279 SRDIA--PDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSI 356 (783)
Q Consensus 279 ~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 356 (783)
..... .-..+|-.+.++|-..|++++|...|.+..+.....-+..+-.+..+|.+.|+++.+...|++.....+. +.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hH
Confidence 75311 1234588899999999999999999998887654333445566888999999999999999999987443 67
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHhh
Q 039931 357 FAFNSIIAAYSRAG----LEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI----EKGFPINKVA 428 (783)
Q Consensus 357 ~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~ 428 (783)
.+...|...|...+ ..++|..++.+..+.- +.|...|..+...+....-+ .++..+.... ..+..+.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHH
Confidence 78888888888775 5677888888777654 44777787777776655443 3366666544 4566678899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH-H
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRR---KIFPDA------VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNF-A 498 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~ 498 (783)
.|.+...+...|++..|...|+..... ...+|. .+--.+...+-..++.+.|.+.+..+.+. .|+.+ .
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999988765 122222 22334455666778999999999999986 36544 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG-LVPDIVTYNTLIGGYC 577 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~ 577 (783)
|..+.-.....+...+|...++......- .++..++.+...+.+...+..|.+-|....+.- ..+|..+..+|.+.|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 44444333345788899999999887643 367777777878888888999988777766532 2356666666766554
Q ss_pred H------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 578 K------------ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG 645 (783)
Q Consensus 578 ~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 645 (783)
+ .+..++|+++|.+.++.. +-|...-|-+.-+++..|++.+|..+|.+..+... -...+|..+-+.
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHH
Confidence 3 345778999999988732 34778888899999999999999999999987543 122244444444
Q ss_pred Hh-hccHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHH-HHHHH
Q 039931 646 VC-CDILDRAIIIAAKLLKMAF-VPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDET-SYKIM 711 (783)
Q Consensus 646 ~~-~~~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~-~~~~l 711 (783)
|. .+++..|++.|+...++-. .-+..+...|..++.+.|.+.+|.+++.++....|. |+. -+|..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a 757 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHH
Confidence 33 3899999999999765433 346677889999999999999999999999999987 554 34443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-21 Score=192.72 Aligned_cols=443 Identities=18% Similarity=0.127 Sum_probs=360.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
-..|..-..+.|++++|.+--...-..+.. +....-.+-..+.+..+.+...+.-....+.. ..-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 456677788899999999987766554322 33333344456666667776655544444432 2346789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTC-SSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~ 412 (783)
.|+++.|+.+++.+++..++ .+..|..+..++...|+.+.|.+.|.+..+. .|+.... +.+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999997555 7889999999999999999999999999885 4654443 445555667899999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF 492 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 492 (783)
.+.+.++.... -...|+.|...+...|++..|+..|++..+..+. -...|-.|...|...+.+++|+..+.+.....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 99998887433 4578999999999999999999999999887433 34678889999999999999999999987752
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHH
Q 039931 493 VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNT 571 (783)
Q Consensus 493 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 571 (783)
+...+.+..+...|-..|.++.|+..+++.++..+. =+..|+.|..++-..|++.+|...|.+.+.. .|+ ..+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHH
Confidence 334567888888899999999999999999987433 3678999999999999999999999999985 454 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh-
Q 039931 572 LIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC- 648 (783)
Q Consensus 572 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~- 648 (783)
|...|...|.+++|..++....+ +.|.. ...+.|...|-+.|++++|+..|++.++ +.|+. ..|+.+-..+-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 99999999999999999999997 67765 6789999999999999999999999886 78876 467777666554
Q ss_pred ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
|+.+.|++.+.+++. +.|.- ..++.|.+.|...|+..+|++.++.++++.|++ +.+|..++-.
T Consensus 436 g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf-pdA~cNllh~ 499 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF-PDAYCNLLHC 499 (966)
T ss_pred hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC-chhhhHHHHH
Confidence 889999999999988 66865 678899999999999999999999999999884 4455555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-20 Score=187.86 Aligned_cols=433 Identities=15% Similarity=0.087 Sum_probs=329.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
.|.+-..+.|++.+|.+.-...-+.. +.+......+-.++....+.+.... .....+. ..+.-..+|..+.
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a------~~~~a~r--~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSA------GSLLAIR--KNPQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhh------hhhhhhh--ccchHHHHHHHHH
Confidence 34444556666666666544433322 2223333334444555555544421 1111111 1122456788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHH-HHHHHHHHhcCCH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLY-DITVAGLCWAGRL 337 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~ 337 (783)
+.+-..|++++|+.+|+.|++.... ....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence 8888888888888888888876433 5667888888888888888888888887775 3443332 3344445567899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 338 DEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS-SCTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 338 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
++|...+.+.++..+. =.+.|+.|...+-..|+...|+..|++..+.+ |+ ...|..|...|...+.++.|...+.+
T Consensus 201 ~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred chhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999998888875332 35678999999999999999999999998753 44 46788899999999999999999988
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 039931 417 MIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN 496 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 496 (783)
....... ...++..+...|...|.++-|++.+++..+..+. -...|+.|..++-..|++.+|.+.+++..... +.-.
T Consensus 278 Al~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 278 ALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred HHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 8776433 6778888888999999999999999999887443 46789999999999999999999999998853 3345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 039931 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGG 575 (783)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 575 (783)
...+.|...|...|.+++|..+|.....-.+. -...++.|...|-+.|++++|+..|++.++ +.|+ ...|+.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchH
Confidence 67888999999999999999999998875322 356788899999999999999999999998 5786 5789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 576 YCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 576 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
|-..|+.+.|++.+.+.+. +.|.. ..++.|...|-..|++.+|+.-|++.++ ++||.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 9999999999999999987 56764 7788999999999999999999999886 56765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-20 Score=195.84 Aligned_cols=299 Identities=12% Similarity=0.078 Sum_probs=160.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCh
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS---SCTCSSLLVGLCKKGRL 407 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~ 407 (783)
+...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556666666666666654322 444566666666666666666666666655321111 13345555556666666
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHH
Q 039931 408 PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA----VAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~ 483 (783)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665542 224455556666666666666666666665554332211 1233444555556666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 66655432 22234455555556666666666666666555432222344555555666666666666666665553 3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 039931 564 PDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN---IRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44444455555566666666666666655542 4555555555555443 33555666666666554444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=193.57 Aligned_cols=301 Identities=17% Similarity=0.095 Sum_probs=165.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHh
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN---CTLYDITVAGLCW 333 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 333 (783)
....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456677888899999999887643 2455677777778888888888888887776532221 2345666677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~ 409 (783)
.|++++|..+|+++.+... ++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 7777777777777766422 35666777777777777777777777777665422211 123344445555555555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
|...++++.+... .+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|++.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555554421 133344445555555555555555555554432221123344444445555555555555554444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCC
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK---QGRMKPAIDAFMDMYRTGLVP 564 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p 564 (783)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 3 233333344444444444455554444444443 3444444444444332 234444444444444443333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-17 Score=186.02 Aligned_cols=431 Identities=12% Similarity=-0.026 Sum_probs=233.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
+..+...|.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++..| .+...|..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 445566667777777777777776655 34556666666677777777777777777766554 445566666777777
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD 266 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 266 (783)
.|++++|+..|......+-..+......+...+.+ .+ ........+.. +++..++..+.. |.....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~a-------~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~ 272 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK-----FA-------ESKAKEILETK-PENLPSVTFVGN-YLQSFR 272 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH-----HH-------HHHHHHHHhcC-CCCCCCHHHHHH-HHHHcc
Confidence 77777776666555433211111111111111110 01 01111111111 111122222211 111111
Q ss_pred hhHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 267 IDQANMLYEEMRSRDIAPDA-VTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
...+..-+..-.+. .|+. ..+..+.. ... -....+++++|.+.|+
T Consensus 273 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~-------------------------------~~~-e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 273 PKPRPAGLEDSNEL--DEETGNGQLQLGL-------------------------------KSP-ESKADESYEEAARAFE 318 (615)
T ss_pred CCcchhhhhccccc--ccccccchHHHHH-------------------------------HHH-HhhhhhhHHHHHHHHH
Confidence 11111111110000 0000 00000000 000 0122355666666666
Q ss_pred HHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 346 DMFEKG-ISP-SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 346 ~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
+..+.+ ..| +...|+.+...+...|++++|+..|++..+.. +-+...|..+...+...|++++|...+++.++...
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p- 396 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS- 396 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 666543 112 34456666666666777777777777766543 11244566666666677777777777777666532
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
.+..++..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+.. +.+...++.+.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg 474 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYG 474 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 25666667777777777777777777777665433 45566666667777777777777777766542 33456667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNF------TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGY 576 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 576 (783)
..+...|++++|.+.|++........+.. .++.....+...|++++|..++++.++. .| +...+..+...+
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 77777777777777777766653221111 1222222334467888888888877764 34 345677777888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 039931 577 CKALDIVRADELVNKMYA 594 (783)
Q Consensus 577 ~~~g~~~~A~~~~~~m~~ 594 (783)
.+.|++++|++.|++..+
T Consensus 553 ~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888887776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-17 Score=182.99 Aligned_cols=428 Identities=14% Similarity=0.016 Sum_probs=295.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 039931 141 AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220 (783)
Q Consensus 141 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (783)
.+......+.+.|++++|+..|++.++.. |+...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34566777888899999999999888754 566778888888888899999998888888764 345667888888888
Q ss_pred hcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 039931 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYG 300 (783)
Q Consensus 221 ~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 300 (783)
..|++++|+ ..|......+...+.. ...++..+.. ..+........+.. +++..++..+.. +....
T Consensus 206 ~lg~~~eA~-------~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~ 271 (615)
T TIGR00990 206 GLGKYADAL-------LDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSF 271 (615)
T ss_pred HcCCHHHHH-------HHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHc
Confidence 888888884 3333333221111111 1111111111 12222222322221 112122222111 11100
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHH
Q 039931 301 GMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS-IFAFNSIIAA---YSRAGLEENAF 376 (783)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~ 376 (783)
... .+..-++...+. .|+ ...+..+... ....+++++|.
T Consensus 272 ~~~-----------------------------------~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 272 RPK-----------------------------------PRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred cCC-----------------------------------cchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 000 000001111110 000 0011111111 13357899999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 377 EAYKIMHQFG-LTP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 377 ~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
+.|+...+.+ ..| +...+..+...+...|++++|+..+++.++.... +...|..+...+...|++++|...|++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998865 223 4456788888899999999999999999987433 567888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
..+. +...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+..+. +...+
T Consensus 394 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~ 470 (615)
T TIGR00990 394 LNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVY 470 (615)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 7544 67889999999999999999999999999864 345677888889999999999999999999886433 67889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hh------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPD--IV------TYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-ITTYN 605 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 605 (783)
+.+...+...|++++|...|++.++. .|+ .. .++..+..+...|++++|.+++++..+. .|+ ...+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~ 546 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVA 546 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 99999999999999999999999875 232 11 1222333344579999999999998874 454 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 606 IRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 606 ~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
.+...+.+.|++++|+..|++..+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999863
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-16 Score=177.13 Aligned_cols=332 Identities=11% Similarity=0.003 Sum_probs=258.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
....+..+.+.|++++|+.+++........ +...+..++.+....|++++|.+.++++....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 345567788899999999999999887554 3445555556677799999999999999886533 45667778888899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
.|++++|...+++.....+. +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999886433 5778888899999999999999999888765432 23333333 347788999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH----HHHHHHHHHh
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDE----AYGVFLEMSR 489 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 489 (783)
++.+.+....++......+...+.+.|++++|...++++.+..+. +...+..+...+...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 998887754445555566677888999999999999998887544 67778888888999999885 7888988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-H
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIV-T 568 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~ 568 (783)
.. +.+...+..+...+.+.|++++|...+++.....+. +...+..+...+.+.|++++|...|+++.+. .|+.. .
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 53 345667888888899999999999999998887544 5667777888889999999999999988875 45543 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAG 595 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 595 (783)
+..+..++...|+.++|.+.|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444567788899999999999988873
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-16 Score=178.08 Aligned_cols=335 Identities=10% Similarity=0.031 Sum_probs=258.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
-...++..+.+.|++++|+.+++..+... +.+...+..++.++...|++++|...|+++++..| .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 35566778889999999999999988876 44566667777888889999999999999998876 56778888899999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
..|++++|...++++.+.. +.+...+..+...+...|+.++| ...+..+...... +...+..+ ..+.+.|
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA-------~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA-------ISLARTQAQEVPP-RGDMIATC-LSFLNKS 191 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH-------HHHHHHHHHhCCC-CHHHHHHH-HHHHHcC
Confidence 9999999999999998764 45677888889999999999988 4566666554332 33334333 3478889
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH----HH
Q 039931 266 DIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE----AM 341 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~ 341 (783)
++++|...++.+.+....++...+..+...+...|++++|.+.++++..... .+...+..+...+...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 9999999999988765444555555666778888999999999998887653 356677778888888888875 78
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 039931 342 EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKG 421 (783)
Q Consensus 342 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 421 (783)
..|++..+..+. +...+..+...+.+.|++++|+..+++..+... .+...+..+...+.+.|++++|...++.+.+.+
T Consensus 271 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888876444 677888888888889999999998888887642 245566777888888899999988888888764
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 039931 422 FPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK 456 (783)
Q Consensus 422 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 456 (783)
.. +...+..+...+...|+.++|...|++..+..
T Consensus 349 P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 33344445667888888888888888887763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-16 Score=179.73 Aligned_cols=417 Identities=12% Similarity=-0.003 Sum_probs=239.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
+.++....-.+......|+.++|+.++.+..... +.+...+..+...+.+.|++++|..+|++.++..| .+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4556666667778888999999999999988643 45666788999999999999999999999988765 556677788
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
+..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++| ...+++..+..+. +...+..+...
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~A-------l~~l~~al~~~P~-~~~~~~~la~~ 159 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDE-------LRAMTQALPRAPQ-TQQYPTEYVQA 159 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHH-------HHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 889999999999999999998764 45566 88888889999999988 5677777765433 56667778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHh------HHHHHHHHHH-----ccCCh---hHHHHHHHHHHhC-CCCCcHH-HH
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAV------TFNIIVSGHC-----KYGGM---EDGDRLLRDLSVS-GLLPNCT-LY 324 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~ 324 (783)
+...|+.++|++.++.... .|+.. ....++.... ..+++ ++|.+.++.+.+. ...|+.. .+
T Consensus 160 l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 8888999999998887654 23310 1111122111 11122 4455555555533 1112111 10
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHH
Q 039931 325 ----DITVAGLCWAGRLDEAMEFFEDMFEKGIS-PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP---SSCTCSS 396 (783)
Q Consensus 325 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ 396 (783)
...+..+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 01122334456666666666666654321 221 11113455666666666666666655432110 0123344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD---AVAFSAYINGLSK 473 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~ 473 (783)
+..++...|++++|.+.++.+.+...+ ....+.. ....|+ ...+..+...+..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~~-----------------------~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPP-FLRLYGS-----------------------PTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecCC-----------------------CCCCCCchHHHHHHHHHHHHHH
Confidence 444555666666666666665544210 0000000 000111 1123334444445
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
.|+.++|++.++++.... +.+...+..+...+...|++++|++.+++.....+. +...+...+..+...|++++|..+
T Consensus 372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHH
Confidence 555555555555554431 233344444455555555555555555555544221 233444444444555555555555
Q ss_pred HHHHHH
Q 039931 554 FMDMYR 559 (783)
Q Consensus 554 ~~~m~~ 559 (783)
++++++
T Consensus 450 ~~~ll~ 455 (765)
T PRK10049 450 TDDVVA 455 (765)
T ss_pred HHHHHH
Confidence 555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-16 Score=177.35 Aligned_cols=426 Identities=13% Similarity=-0.010 Sum_probs=277.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+.+.....-.+......|+.++|+++|.+.....+ .+...+..+...+...|++++|..++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555556667778889999999999999986433 556678899999999999999999999988764 4556777888
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSG 295 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 295 (783)
...+...|+.++| ...+++..+... .+.. +..+...+...|+.++|+..++++.+..+. +...+..+...
T Consensus 90 a~~l~~~g~~~eA-------~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~ 159 (765)
T PRK10049 90 ILTLADAGQYDEA-------LVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQA 159 (765)
T ss_pred HHHHHHCCCHHHH-------HHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 8889999999998 567777766532 2455 888888999999999999999999987443 45556667777
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 296 HCKYGGMEDGDRLLRDLSVSGLLPNCT------LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
+...+..+.|.+.++.+.. .|+.. ....++..... ......
T Consensus 160 l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~ 206 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEK 206 (765)
T ss_pred HHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChh
Confidence 8888888889888876654 22210 00111111100 000111
Q ss_pred CCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 039931 370 GLE---ENAFEAYKIMHQF-GLTPSSC-TCS----SLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIG 440 (783)
Q Consensus 370 g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 440 (783)
+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+........+...|...|
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 112 4444444444432 1111110 000 001223344555555555555555432101111122344555555
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-----------CCCCH---HHHHHHH
Q 039931 441 DLIGAQSLWNELNRRKIFP---DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG-----------FVPNN---FAYNSLI 503 (783)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~li 503 (783)
++++|+..|+++.+..... .......+..++.+.|++++|.+.++.+.+.. -.|+. ..+..+.
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 5555555555554432111 12334444455566666666666666655431 12342 3456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDI 582 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 582 (783)
..+...|++++|+++++++....+. +...+..+...+...|++++|++.+++.++. .|+ ...+..++..+...|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCH
Confidence 8888999999999999999887544 6888999999999999999999999999985 465 66777778888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 583 VRADELVNKMYAGGLDPDITTYNIRMHGY 611 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 611 (783)
++|..+++++++ ..|+....-.+-..+
T Consensus 444 ~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 444 RQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999998 467655544444444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-13 Score=143.75 Aligned_cols=623 Identities=13% Similarity=0.083 Sum_probs=406.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 039931 95 DDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 174 (783)
...+..|.++..|..|...|-..|+.++++..+-.+-..+ +.|..-|..+.......|++++|.-+|.++++..| ++.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~ 241 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNW 241 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cch
Confidence 3344557778899999999999999999999888777766 56678999999999999999999999999999877 454
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH----HHHHHhcCCcchHhhhccchHHHHHHHHH-CCCCC
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL----INAYCIRGQTSYALGKCGAGRMIFDMIQE-EGLSP 249 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~a~~~~~~m~~-~g~~p 249 (783)
...---...|-+.|+...|...|.++.....+.|..-...+ ++.+...++.+.|+ +.++.... .+-.-
T Consensus 242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~-------~~le~~~s~~~~~~ 314 (895)
T KOG2076|consen 242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA-------KALEGALSKEKDEA 314 (895)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHhhccccc
Confidence 44444567788999999999999999887533333333333 44555566666663 44444443 12223
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHH----------------------HH----HHHHHHccCChh
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTF----------------------NI----IVSGHCKYGGME 303 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~~----ll~~~~~~g~~~ 303 (783)
+...++.++..|.+...++.|......+..+..++|..-+ .. +.-++......+
T Consensus 315 ~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e 394 (895)
T KOG2076|consen 315 SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE 394 (895)
T ss_pred cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc
Confidence 5567889999999999999999998888763222222221 11 112334445555
Q ss_pred HHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 304 DGDRLLRDLSVSG--LLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 304 ~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (783)
....+.......+ +.-+...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+..+|...|.+++|.+.|..
T Consensus 395 ~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 395 LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555566655 44566788899999999999999999999999876656788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--------cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 382 MHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIE--------KGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 382 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
.+... +-+...-..|...+.+.|+.++|.+.++.+.. .+..|+....-...+.+.+.|+.++=..+-..|.
T Consensus 475 vl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 475 VLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 98864 22445566677788999999999999998652 2344555566667778888898887666555554
Q ss_pred hCC-----CCC-----------------CHHHHHHHHHHHHccCChHHHHHH------HHHHHhCCCCCCH--HHHHHHH
Q 039931 454 RRK-----IFP-----------------DAVAFSAYINGLSKAGLVDEAYGV------FLEMSRIGFVPNN--FAYNSLI 503 (783)
Q Consensus 454 ~~~-----~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~~~~p~~--~~~~~li 503 (783)
... +.| .......++.+-.+.++.....+- +.--...|+.-+. ..+.-++
T Consensus 554 ~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 554 DDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELI 633 (895)
T ss_pred HHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHH
Confidence 321 001 111122223333333221111111 1111111222222 2345567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CC-ChhHHHHHHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLL-PDNF----TFNIIINGFCKQGRMKPAIDAFMDMYRT-GL--VP-DIVTYNTLIG 574 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p-~~~~~~~li~ 574 (783)
..+++.++.++|..+...+...... -+.. .-...+.+.+..+++..|...++.|+.. +. .| -...|+...+
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 7888999999999998887765221 1222 2234456677889999999999998864 11 22 2345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh-----h
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG-VC-----C 648 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~-----~ 648 (783)
.+.+.++-.--.+++..+....-.-+...+....+....++.+..|+..+-+... ..||....+..+.. +. +
T Consensus 714 ~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr 791 (895)
T KOG2076|consen 714 YFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQR 791 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHH
Confidence 6666665544445554444322111233444445666778899999997776654 35664444333321 11 1
Q ss_pred ---c---cHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC------C------HHHHH
Q 039931 649 ---D---ILDRAIIIAAKLLKMAFV-PNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDF------D------ETSYK 709 (783)
Q Consensus 649 ---~---~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------d------~~~~~ 709 (783)
. .+-+++.++.+..+.... -...++..+..+|-..|-+.-|..+|+++++..|.+ | ..+||
T Consensus 792 ~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N 871 (895)
T KOG2076|consen 792 RVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN 871 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh
Confidence 1 344666666665442211 134677789999999999999999999999986541 1 12333
Q ss_pred HHHHHHhhhhHHHHHHHHHHhc
Q 039931 710 IMDRAYHNIQENAEFFQETSEK 731 (783)
Q Consensus 710 ~l~~~y~~~~~~~~~~~~~~~~ 731 (783)
.- =+|.. .++...|++.+++
T Consensus 872 L~-LIY~~-SGn~~lArqil~k 891 (895)
T KOG2076|consen 872 LH-LIYKK-SGNMQLARQILEK 891 (895)
T ss_pred hh-hhhcc-CCcHHHHHHHHHh
Confidence 32 24432 5777888877765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-14 Score=148.53 Aligned_cols=614 Identities=13% Similarity=0.037 Sum_probs=405.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
..++...-.|+.++|.+++.++++.. +.....|.+|...|-..|+.+++...+--+....| .|...|..+.......|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcc
Confidence 33444455599999999999999987 56788999999999999999999999888877766 56688999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH----HHHHHHhc
Q 039931 189 CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA----LLNGYVKA 264 (783)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~----li~~~~~~ 264 (783)
++++|.-.|.+.++.. +++....-.-...|-+.|+...|. .-|.++.....+.|..-... .+..+...
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am-------~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAM-------ETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHH-------HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999876 566666666777888999999884 55666665432222222333 45567777
Q ss_pred CChhHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC--------------------------
Q 039931 265 RDIDQANMLYEEMRSR-DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL-------------------------- 317 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------------------------- 317 (783)
++-+.|.+.++..... +-.-+...++.++..+.+...++.|......+.....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999999988773 1223556688888888999999998888777765211
Q ss_pred -CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 039931 318 -LPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG--ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTC 394 (783)
Q Consensus 318 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 394 (783)
.++..+. -+.-++......+....+...+.... +.-++..|..+..+|.+.|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1222221 12223344444444444445555544 4446778899999999999999999999999987655577889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHH
Q 039931 395 SSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR--------RKIFPDAVAFSA 466 (783)
Q Consensus 395 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~ 466 (783)
..+..+|...|..++|.+.++.++...+ .+...-.+|...+-+.|+.++|.+++..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 9999999999999999999999998843 3777888899999999999999999998642 223444444455
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHH-----
Q 039931 467 YINGLSKAGLVDEAYGVFLEMSRIG----------------------FVPNNFAYNSLIAGFCNRGKLNEALKLE----- 519 (783)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~m~~~~----------------------~~p~~~~~~~li~~~~~~g~~~~A~~l~----- 519 (783)
....+.+.|+.++-+.+-..|+..+ .+....+...++.+-.+.++.....+-.
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 5667788888877665555554321 1111222233333333333322211111
Q ss_pred -HHHHHCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCh---hHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 520 -REMRQKGLLPD-N-FTFNIIINGFCKQGRMKPAIDAFMDMYRTGL--VPDI---VTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 520 -~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.--...|..-+ . ..+.-++..+++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...+..
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111122211 1 2355677888999999999999888876431 1221 1234556677789999999999998
Q ss_pred HHHC-CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hhccHHHHHHHHHHHHHc
Q 039931 592 MYAG-GL--DPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV---CCDILDRAIIIAAKLLKM 664 (783)
Q Consensus 592 m~~~-g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~~~~A~~~~~~~~~~ 664 (783)
|... +. .|. ...||...+...+.|+-.--.+++..+.. ..|+....-.+|.|. ..+.+.-|+..+-++..
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 8873 11 232 24466556666666655555555544432 223332222233221 12566677776666555
Q ss_pred CCCCCHHHHHHHHH-HH----------HhcCChhhHHHHHHHHhhcCCCC-CHHHHHHHHHHHhhhhHHHHHHHHHHhcC
Q 039931 665 AFVPNVVTTNVLLS-HF----------CKQGMPEKTLLWGQKLSEISFDF-DETSYKIMDRAYHNIQENAEFFQETSEKS 732 (783)
Q Consensus 665 ~~~p~~~~~~~ll~-~~----------~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 732 (783)
..||....+..+. +| .++-..-.++.++++..++.... --.++.+++++|.. -+=+..|..+++|+
T Consensus 769 -~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~-~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 -QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQ-IGLVHLAVSYYEKV 846 (895)
T ss_pred -hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHH
Confidence 3466444433332 22 22334456777777777765431 23456677999865 46677888888888
Q ss_pred CCcchhh
Q 039931 733 LFLDFLM 739 (783)
Q Consensus 733 ~~~~~~~ 739 (783)
+.++|-+
T Consensus 847 L~~~p~~ 853 (895)
T KOG2076|consen 847 LEVSPKD 853 (895)
T ss_pred hCCCccc
Confidence 8876533
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-14 Score=160.42 Aligned_cols=463 Identities=12% Similarity=0.011 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
+.+--.-+-...+.|+++.|+..|++.++.........+ .++..+...|+.++|+..+++.+... ..+......+...
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 333333344567899999999999999988632112233 88888899999999999999997221 1334444555678
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
+...|++++|+++++++.+.. +.|...+..++..+...++.++| .+.++.+... .|+...+-.++..+..
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eA-------l~~l~~l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVV-------LKQATELAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHH-------HHHHHHhccc--CcchHHHHHHHHHHHh
Confidence 889999999999999999876 45567777888889999999888 4566666554 4565556555455545
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.++..+|++.++++.+..+. +...+..+..++.+.|-...|.++..+-.. .++-..... =+.+.|.+.
T Consensus 182 ~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~------~f~~~~~~~-----l~~~~~a~~ 249 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPN------LVSAEHYRQ-----LERDAAAEQ 249 (822)
T ss_pred cchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcc------ccCHHHHHH-----HHHHHHHHH
Confidence 66776799999999998432 667778888899999999998887765332 111111000 001111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-HH----HHHHHHHHHhcCChhHHHHHHHHH
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF-GLTPSS-CT----CSSLLVGLCKKGRLPEAWDLLCKM 417 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~ 417 (783)
.+. +..|+.. -. . +.--.+.|+.-++.+... +-.|.. .. ..-.+-++...|+..++++.++.+
T Consensus 250 vr~----a~~~~~~-~~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 250 VRM----AVLPTRS-ET---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred Hhh----ccccccc-ch---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 111 1111000 00 0 001124444444444431 111211 11 112233556667777777777777
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-
Q 039931 418 IEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK-----IFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG- 491 (783)
Q Consensus 418 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 491 (783)
...+.+....+-..+.++|...+.+++|+.+++.+.... ..++......|..++...+++++|..+++.+.+..
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 766655555666677777777777777777777765532 12233334667777777777777777777776521
Q ss_pred ------------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039931 492 ------------FVPNNF-AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMY 558 (783)
Q Consensus 492 ------------~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 558 (783)
..||-. .+..++..+.-.|++.+|.+.++++....+. |......+.+.+...|.+.+|.+.++...
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 112222 3344566677788888888888888776554 77777788888888888888888886665
Q ss_pred HcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 559 RTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNI 606 (783)
Q Consensus 559 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 606 (783)
.. .| +..+....+.++...+++++|..+.+.+.+ ..|+....-.
T Consensus 478 ~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 478 SL--APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred hh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 53 45 456666777777778888888888877776 3565444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-13 Score=136.66 Aligned_cols=560 Identities=11% Similarity=0.051 Sum_probs=371.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 039931 118 EMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLL 197 (783)
Q Consensus 118 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 197 (783)
++..+|..++...++.+ +.++..|..-.+.=-..|++..|..+..+-.+.-+ .+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cp-rSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECP-RSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCC-chHHHHHHH----HhcCChHHHHHHH
Confidence 45667777888877776 34445555544444455666666555544433322 233333221 1233334444444
Q ss_pred HHHHhCC------------------------------CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCC
Q 039931 198 HVMHKYM------------------------------CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGL 247 (783)
Q Consensus 198 ~~m~~~g------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~ 247 (783)
....+.- ++.++..|-..+. ....+.| +-++.+..+. +
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVe----lE~~~da-------rilL~rAvec-c 406 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVE----LEEPEDA-------RILLERAVEC-C 406 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHh----ccChHHH-------HHHHHHHHHh-c
Confidence 4433321 1222222322221 1222222 4455544442 1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHH----hCCCCCcHHH
Q 039931 248 SPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLS----VSGLLPNCTL 323 (783)
Q Consensus 248 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~ 323 (783)
+.+...| -+|.+..-++.|..+++...+. ++.+...|.+-...--..|+.+....++++-+ ..|+..+...
T Consensus 407 p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 407 PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 2233333 3455666678888888888775 66677788777777777888888877776543 4577777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISP--SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
|-.=...+-..|..-.+..+....+..|++- -..||+.-.+.|.+.+.++-|..+|...++.- +-+...|......-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHH
Confidence 7766677777788888888888888777652 24578888888888888888888888888752 33556677666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
-..|..++-..++++....- +-....|-.....+...|+...|..++....+..+. +...|-+-+.....+.+++.|.
T Consensus 561 k~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHH
Confidence 67788888888888888873 336667777777888888888888888888877554 6677888888888888888998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPD-NFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.+|.+.... .|+...|.--+..-.-.+..++|++++++.++. -|+ ...|-.+...+-+.++++.|.+.|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 888888764 467777766666666678888888888888776 333 456777778888888888888888776664
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 640 (783)
++.....|..|...=-+.|.+-+|..++++..-++ +-|...|...|..-.+.|+.+.|..++.+.++. ..-+...|.
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWa 791 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWA 791 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHH
Confidence 33345667777777778888888888888887654 346788888888888899999888888877753 222335566
Q ss_pred HHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 641 TLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 641 ~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
.-|...-. ++-.++...+++ ..-|+.....+...|.....+++|.+|++++++++|+ ...+|..+...+.
T Consensus 792 EaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel 862 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFEL 862 (913)
T ss_pred HHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHH
Confidence 65544332 232333333333 3445556666667777788889999999999888877 5666755555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-14 Score=138.89 Aligned_cols=325 Identities=17% Similarity=0.239 Sum_probs=152.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYG---SVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
..+.+=|.|++. ...|.+.++.-+++.|...|++.+...--.|++.-+-.+.-+ .-|+.|-.|...|- .+..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc-
Confidence 334566777765 446788899999999999998888777666666544333222 22344444444432 222233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
+.|.+.+ ++.+.. +.+..+|.++|.++||.-..+.| +.++.+-.....+.+..+||.+|
T Consensus 191 -------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA-------~~L~kE~~~~k~kv~~~aFN~lI 249 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERA-------RELYKEHRAAKGKVYREAFNGLI 249 (625)
T ss_pred -------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHH-------HHHHHHHHHhhheeeHHhhhhhh
Confidence 2333222 222221 33445555555555555444444 44555544444444555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHH----HHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDG----DRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
.+-.-. ...++..+|....+.||..|+|+++++..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.
T Consensus 250 ~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 433211 1145555555555555555555555555555554432 33444444445555555554444444444
Q ss_pred CCHH-HHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHH
Q 039931 335 GRLD-EAMEFFEDMFEK----GISP----SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFG----LTPS---SCTCSSLL 398 (783)
Q Consensus 335 g~~~-~A~~~~~~m~~~----g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~---~~~~~~li 398 (783)
++.. .|..++.++.+. .+.| |...|...++.|.+..+.+-|.++..-+.... +.|+ ..-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 4432 223333332221 1111 22233334444444444444444333322110 1111 12233444
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
...|+....+.....|+.|+-.-+-|+..+...++.+..-.|.++-.-++|..+..
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 44444444444444444444443444444444444444444444444444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-14 Score=157.48 Aligned_cols=449 Identities=10% Similarity=0.038 Sum_probs=269.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 149 LLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 149 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
..+.|+++.|+..|.+.++..|.-....+ .++..+...|+.++|+..+++..... +........+...|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 45677777777777777765543222223 55666666677777777766665110 11122222223455555666655
Q ss_pred hhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHH
Q 039931 229 LGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRL 308 (783)
Q Consensus 229 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 308 (783)
.++++++.+.... |...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.
T Consensus 122 -------iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 122 -------LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred -------HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 3455555544332 3444555555556666666666666665544 33333332222222223333334555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 039931 309 LRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT 388 (783)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 388 (783)
++++.+..+ .+...+..+...+.+.|-...|.++..+-. +.++-...... +.+.|.+. ++.+..
T Consensus 192 ~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~----vr~a~~ 255 (822)
T PRK14574 192 SSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQ----VRMAVL 255 (822)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHH----Hhhccc
Confidence 555444421 133333444444444444444443333211 11110000000 00111111 111111
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHhh----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 039931 389 PSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK-G-FPINKVA----FTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAV 462 (783)
Q Consensus 389 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 462 (783)
++..- -.+.--.+.|+.-++.+... + .++.... ..-.+-++...|+..++++.|+.+...+......
T Consensus 256 ~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred ccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 11000 00111245667777776653 1 1222122 2234557788999999999999999988654566
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIG-----FVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGL---------- 527 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---------- 527 (783)
+-..+.++|...+++++|..++..+.... .+++......|..++...+++++|..+++.+.+..+
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 78889999999999999999999987643 233444567899999999999999999999987422
Q ss_pred ---CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 039931 528 ---LPDN-FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DIT 602 (783)
Q Consensus 528 ---~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 602 (783)
.||- ..+..++..+...|++.+|.+.++++.... +-|......+.+.+...|.+.+|++.++.... +.| +..
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~ 485 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLI 485 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHH
Confidence 2232 234455777889999999999999998763 44889999999999999999999999977765 456 457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
+....+.++...|++++|..+.+.+.+. .|+..
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 7788889999999999999999998863 44443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-13 Score=134.33 Aligned_cols=324 Identities=13% Similarity=0.183 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--Chhh-HHHHHHHHHhCCCCCCHHhHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG--CIRI-GESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~-A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+.+=|.|+. +..+|...++.-+|+.|...|...+...--.|++.-|--+ ++-- -.+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 344455554 3456677777777777777766655555444444333221 1111 122333333333 2222232
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSG 295 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 295 (783)
|.|.+. .-+|+..++ +..+|..+|.++|+.-..+.|.++|++......+.+..+||.+|.+
T Consensus 191 -----K~G~vA---------dL~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~ 251 (625)
T KOG4422|consen 191 -----KSGAVA---------DLLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGA 251 (625)
T ss_pred -----ccccHH---------HHHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhH
Confidence 222221 223333332 5667777777777777777777777777766666677777777764
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 039931 296 HCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE----AMEFFEDMFEKGISPSIFAFNSIIAAYSRAGL 371 (783)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 371 (783)
-.- ....+++.+|......||..++|+++.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++
T Consensus 252 ~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 252 SSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 322 2225666666666666666666666666666665543 34455566666666666666666666666655
Q ss_pred HHH-HHHHHHHHHh----CCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HhhHHHHHHH
Q 039931 372 EEN-AFEAYKIMHQ----FGLTP----SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKG----FPIN---KVAFTVLLDG 435 (783)
Q Consensus 372 ~~~-A~~~~~~m~~----~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~ 435 (783)
..+ |..++.++.. ..++| |..-|...+..|.+..+.+-|.++..-+.... +.|+ ...|..+...
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 533 3333333322 11111 22233444455555555555555544333210 1111 1223344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 039931 436 YFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRI 490 (783)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 490 (783)
.|+....+.-...|+.|.-+-..|+..+...++++..-.|+++-.-+++.++...
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 4444445555555555544444444444444444444444444444444444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-15 Score=143.42 Aligned_cols=454 Identities=16% Similarity=0.082 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHH-HHHHHHHccCChhHHHHHHHHHHhCCCCCc----HHHHHH
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFN-IIVSGHCKYGGMEDGDRLLRDLSVSGLLPN----CTLYDI 326 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 326 (783)
.+...|..-|..+....+|+..|+-+.+...-|+.-... .+.+.+.+...+.+|.+.++..+..-+..+ ..+.+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344456677888888999999999999888878765543 345678888999999999998887643333 334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------------CHHHH
Q 039931 327 TVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP------------SSCTC 394 (783)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------------~~~~~ 394 (783)
+...+.+.|+++.|+..|+...+. .||..+-..|+-.+.--|+.++..+.|.+|+.....| +....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555688999999999999998875 5787776667777777899999999999997653332 33333
Q ss_pred HHHHH-----HHHhcC--ChhHHHHHHHHHHHcCCCCCHh-------------hHH--------HHHHHHHhcCCHHHHH
Q 039931 395 SSLLV-----GLCKKG--RLPEAWDLLCKMIEKGFPINKV-------------AFT--------VLLDGYFRIGDLIGAQ 446 (783)
Q Consensus 395 ~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~A~ 446 (783)
+..+. -..+.+ +-++++-.-.+++.--+.|+-. .+. .-..-+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 32222 122211 1222222222222222222211 000 1123467899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 447 SLWNELNRRKIFPDAVAFSAYINGL--SKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ 524 (783)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 524 (783)
++++-..+..-..-...-+.|-..+ ..-.++..|.+.-+...... .-|......-.+.....|++++|.+.+++...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9999888764332222233332222 22345666766666555431 12222222222233457999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 525 KGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTY 604 (783)
Q Consensus 525 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 604 (783)
.........||. .-.+-..|++++|++.|-++... +..+......+.+.|....+...|++++.+.... ++.|+.+.
T Consensus 519 ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 754433444443 33567899999999999887653 3456777888889999999999999999888762 34478889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-H
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVSAGIVP-NTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHF-C 681 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~ 681 (783)
.-|.+.|-+.|+-.+|++.+-+--+ ..| +..|...|...|.. ...++|+.+|++.-- +.|+.+-|-.++..| .
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 9999999999999999998766433 334 44555555544444 467899999999877 789999999988766 5
Q ss_pred hcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 682 KQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 682 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
+.|++.+|+..++.....-|+ |...+..|.++..
T Consensus 672 rsgnyqka~d~yk~~hrkfpe-dldclkflvri~~ 705 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAG 705 (840)
T ss_pred hcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhc
Confidence 689999999999999988887 8888888887654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-11 Score=121.70 Aligned_cols=518 Identities=10% Similarity=-0.019 Sum_probs=402.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHH
Q 039931 158 VWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRM 237 (783)
Q Consensus 158 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~ 237 (783)
=.+++.+.++. ++.++..|-.. ......+.|.-++.+..+. |+.+...|. +|++...++.| ++
T Consensus 365 K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenA-------kk 427 (913)
T KOG0495|consen 365 KKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENA-------KK 427 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHH-------HH
Confidence 34566677665 32455555443 3455667788888888765 344444444 44454455555 67
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 238 IFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEM----RSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 238 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
++....+. ++.+...|.+-...--.+|+.+...++.++- ...|+..+...|..=...|-..|..-.+..+....+
T Consensus 428 vLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi 506 (913)
T KOG0495|consen 428 VLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI 506 (913)
T ss_pred HHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH
Confidence 77777653 4557888888888888889999888887764 446888888888888888888899999999999888
Q ss_pred hCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 039931 314 VSGLLP--NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 314 ~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
..|+.. -..+|..-...|.+.+.++-|..+|...++--+ .+...|...+..--..|..++...+|++.... ++-..
T Consensus 507 gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae 584 (913)
T KOG0495|consen 507 GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAE 584 (913)
T ss_pred hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcch
Confidence 887753 345788888889999999999999999988633 36778888888777889999999999999886 33355
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGL 471 (783)
Q Consensus 392 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 471 (783)
..|......+-..|++..|..++....+.... +...|-+-+........++.|..+|.+.... .|+...|..-+...
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence 66777777888899999999999999998555 8889999999999999999999999988775 45777777777777
Q ss_pred HccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPN-NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPA 550 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 550 (783)
--.+..++|.+++++..+. -|+ ...|..+.+.+-+.++++.|...|..-.+. ++-.+-.|-.|...--+.|++-.|
T Consensus 662 r~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhH
Confidence 7789999999999999885 344 456778888889999999999988876665 333556777777778889999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
..+++...-.+ +-|...|...|..-.+.|+.+.|..+..+.++. ++.+...|..-|...-+.++-..+.+.+++..
T Consensus 739 R~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-- 814 (913)
T KOG0495|consen 739 RSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-- 814 (913)
T ss_pred HHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc--
Confidence 99999988764 457889999999999999999999999998874 44566788888888888888777776666532
Q ss_pred CCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 631 GIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 631 g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
-|....-++-..+.. .++++|.+.|.+.++ +.||. .+|..+...+..+|.-+.-.+++.+.....|. ....|
T Consensus 815 ---~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~-hG~~W 888 (913)
T KOG0495|consen 815 ---HDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT-HGELW 888 (913)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-CCcHH
Confidence 243333333333433 689999999999998 45766 78888888899999999999999999998886 34445
Q ss_pred HHH
Q 039931 709 KIM 711 (783)
Q Consensus 709 ~~l 711 (783)
...
T Consensus 889 ~av 891 (913)
T KOG0495|consen 889 QAV 891 (913)
T ss_pred HHH
Confidence 433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-14 Score=135.93 Aligned_cols=480 Identities=16% Similarity=0.082 Sum_probs=236.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHVMHKYMCVADFFAY-NILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA 256 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 256 (783)
..|..-|..+....+|+..++-+.+...-||.-.. ..+.+.+.+..++.+|+.++ +..+++.+.-.-.--+...+.
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfy---rmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFY---RMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHH---HHHHhhccccchhhHHHHHhh
Confidence 33455566777888899999988887666665433 23455677777888886544 223333332111111234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc------------HHHH
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN------------CTLY 324 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~ 324 (783)
+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+| ....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555678899999999999988775 57887766666667778999999999999876533332 2222
Q ss_pred HHHHH-----HHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039931 325 DITVA-----GLCWAG--RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSL 397 (783)
Q Consensus 325 ~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 397 (783)
+.-|. -.-+.. +.++++-.--+++.--+.|+... +| +=.++.++.-.-..+..+. -..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcle~lk~s~~~~la~dl--ei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCLESLKASQHAELAIDL--EINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHHHHHHHhhhhhhhhhh--hhhH
Confidence 22111 111111 11222222222222112222110 00 0001111100000000000 0001
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR--IGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG 475 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 475 (783)
...+.+.|+++.|+++++-..+..-..-...-+.|-..+.- -.++..|...-+......-- +......-.+.-..+|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecC
Confidence 12345556666666665555544322222222222222222 22444555544444332111 2222222222334456
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 039931 476 LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFM 555 (783)
Q Consensus 476 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 555 (783)
++++|.+.+++.....-.-....||. .-.+-..|++++|+..|-++..- +..+....-.+.+.|-...+...|++++.
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 66666666666554321111122222 22344556666666655544322 11244455555556666666666666665
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 556 DMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN 635 (783)
Q Consensus 556 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 635 (783)
+.... ++.|+....-|...|-+.|+-..|.+.+-+--+ -++-|..+...|..-|....-+++|+.+|++..- ++|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 54432 233455566666666666666666655443332 1233556666666666666666666666665432 4566
Q ss_pred HHHHHHHHHHHhh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039931 636 TVTYNTLMNGVCC--DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG 684 (783)
Q Consensus 636 ~~~~~~li~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 684 (783)
..-|..||..|.+ |.+.+|.++++....+ ++.|......|++.+...|
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 6666666655553 5666666666655442 3445555555555554444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-10 Score=114.98 Aligned_cols=573 Identities=11% Similarity=0.066 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREV-GIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
+.+|-.-+....++|+...-...|++.+.. -+.-....|...+...-..|-.+.++.+|++.++..|+ .-+--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~----~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE----AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH----HHHHHHH
Confidence 367777788888888888888888876654 22334456888888887888888888888888775432 2455667
Q ss_pred HHHhcCChhhHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCCh--HHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYM------CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNV--VVY 254 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~--~~~ 254 (783)
-+++.++.++|.+.+...+... -+.+...|..+-+..++.-+.-..+. ...++..+.. .-+|. ..|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln----vdaiiR~gi~--rftDq~g~Lw 251 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN----VDAIIRGGIR--RFTDQLGFLW 251 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC----HHHHHHhhcc--cCcHHHHHHH
Confidence 7788888888888887765321 13445566666666665543322211 0122222221 12343 579
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
++|.+.|.+.|.+++|.++|++.... ...+.-|..+.++|.+-....-+..+= ...+.+..+. ..
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~ 316 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DD 316 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hh
Confidence 99999999999999999999998765 224555667777665532221111111 0000111110 11
Q ss_pred CCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGI-----------SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS------SCTCSSL 397 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l 397 (783)
-+++-....|+.+.+.++ +-++..|..-.. +..|+..+-...|.+..+. +.|. ...|..+
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHH
Confidence 223444445555554321 113444443332 2345555666666665543 2221 1235556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPIN---KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKA 474 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 474 (783)
.+.|-..|+++.|..+|++..+..++.- ..+|..-..+-.+..+++.|+++.+..... |.... ..+...
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~ 465 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDN 465 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcC
Confidence 6666666666666666666655533311 123333333444455555555554444332 21111 112222
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 039931 475 GLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAF 554 (783)
Q Consensus 475 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 554 (783)
+..-.+ . +..+...|...++.--..|-++....+++++.+..+. ++...-.....+-...-++++.+++
T Consensus 466 ~~pvQ~-----r-----lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 466 SEPVQA-----R-----LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCcHHH-----H-----HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 221111 0 0113345666666666778888888899998887665 4444333344455666788888888
Q ss_pred HHHHHcCCCCCh-hHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 039931 555 MDMYRTGLVPDI-VTYNTLIGGYCK---ALDIVRADELVNKMYAGGLDPDITTYNIRM--HGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 555 ~~m~~~g~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 628 (783)
++-+..--.|++ ..|+..+.-+.+ ..+++.|..+|++.++ |++|...-+..|+ ..=-..|....|+.++++..
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 876654334553 467666655543 3468899999999998 7777543332222 33345588888999999865
Q ss_pred HCCCCCCH--HHHHHHHHHHhh--ccHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChhhHHHHHHHHhhc-C
Q 039931 629 SAGIVPNT--VTYNTLMNGVCC--DILDRAIIIAAKLLKMAFVPNVVTTNVL---LSHFCKQGMPEKTLLWGQKLSEI-S 700 (783)
Q Consensus 629 ~~g~~p~~--~~~~~li~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~-~ 700 (783)
. ++.+.. ..||..|.-... | ......+++++++ .-||...-... ...=++.|..+.|..++.-..++ +
T Consensus 614 ~-~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 614 S-AVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred h-cCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 4 455554 468887764321 1 1233445555555 34555432222 22347889999999888777764 4
Q ss_pred CCCCHHHHHHHHHHHhhhhHHHHHHHHHH
Q 039931 701 FDFDETSYKIMDRAYHNIQENAEFFQETS 729 (783)
Q Consensus 701 ~~~d~~~~~~l~~~y~~~~~~~~~~~~~~ 729 (783)
|.-+..-|+.--.- --.+++.+..++|+
T Consensus 690 Pr~~~~fW~twk~F-EvrHGnedT~keML 717 (835)
T KOG2047|consen 690 PRVTTEFWDTWKEF-EVRHGNEDTYKEML 717 (835)
T ss_pred CcCChHHHHHHHHH-HHhcCCHHHHHHHH
Confidence 44334334332211 11146677777776
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-10 Score=115.30 Aligned_cols=445 Identities=10% Similarity=0.022 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-HhHHHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADF-FAYNILIN 217 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~ 217 (783)
...|--...-=..++++..|..+|++++.... .+...|---+.+-.++..+..|..++++....- |-+ ..|-..+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHH
Confidence 33444444444445566666666766665542 455556666666666666667777776666542 222 23333444
Q ss_pred HHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 039931 218 AYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC 297 (783)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 297 (783)
+=-..|++..| +++|+.-.+ ..|+..+|++.|+.-.+.+.++.|..+|++.+- +.|++.+|--..+.=.
T Consensus 150 mEE~LgNi~ga-------RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~ 218 (677)
T KOG1915|consen 150 MEEMLGNIAGA-------RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE 218 (677)
T ss_pred HHHHhcccHHH-------HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH
Confidence 44455666666 677777655 357777777777777777777788888777765 3577777777777777
Q ss_pred ccCChhHHHHHHHHHHhC-CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 039931 298 KYGGMEDGDRLLRDLSVS-GL-LPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS-IFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 374 (783)
++|+...+..+++.+.+. |- ..+...+++....-.++..++.|.-+|.-.++.=+... ...|.....---+-|+...
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 777777777777776543 11 11223344444444455566666666666655411110 2222222222222333222
Q ss_pred HHH--------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHH
Q 039931 375 AFE--------AYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINK-VAFTVLLDGYFRIGDLIGA 445 (783)
Q Consensus 375 A~~--------~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 445 (783)
..+ -|+.+...+ +-|-.+|--.++.-...|+.+...+++++.+..-++.+. ..|...|-...
T Consensus 299 IEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi-------- 369 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI-------- 369 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH--------
Confidence 111 122333332 234445555555555556666666666665554222111 11111111100
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHH
Q 039931 446 QSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFC----NRGKLNEALKLERE 521 (783)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~ 521 (783)
|..+-.-....+++.+.++++..++. ++...+||.-+--.|+ ++.++..|.+++..
T Consensus 370 -------------------nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 370 -------------------NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -------------------HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00011112234444444444444442 2333334333222222 34444555554444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 039931 522 MRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG-LDPD 600 (783)
Q Consensus 522 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 600 (783)
.+. ..|...+|...|..-.+.++++.+..++++.++-+ +-|..+|.-....=...|+.+.|..+|+-.++.. +...
T Consensus 430 AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 430 AIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred Hhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 432 23444444444554445555555555555555432 1134444444444444455555555555544421 0111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 601 ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 601 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
...|-+.|+-=...|.++.|..+++++++
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 23344444444445555555555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-10 Score=111.95 Aligned_cols=447 Identities=12% Similarity=0.071 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
.+|-.-.+-=-..+.+..|..+|++++..+ ..+...|-..+..=.++.....|..++++.+..=|..|.. |.--+.+-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHH
Confidence 344444444445677889999999999877 5677788888998899999999999999998876555554 44455566
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
-..|++..|.++|++-... .|+...|++.|+.=.+....+.| +.+++...- +.|++.+|-.....-.+.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeiera-------R~IYerfV~--~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERA-------RSIYERFVL--VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHH-------HHHHHHHhe--ecccHHHHHHHHHHHHhc
Confidence 6789999999999988764 79999999999999998888888 788888765 359999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHh----HHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCC---
Q 039931 265 RDIDQANMLYEEMRSRDIAPDAV----TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLP-NCTLYDITVAGLCWAGR--- 336 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~--- 336 (783)
|....|..+|+...+. + -|.. .+.+....=.++..++.|.-+|.-.+..=+.. ....|..+...--+-|+
T Consensus 221 g~~~~aR~VyerAie~-~-~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 221 GNVALARSVYERAIEF-L-GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred CcHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 9999999999998764 1 1222 33444444445677888888888877653221 23445555444444455
Q ss_pred HHHHHH-----HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHH----HHHH----
Q 039931 337 LDEAME-----FFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC--TCSSL----LVGL---- 401 (783)
Q Consensus 337 ~~~A~~-----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l----i~~~---- 401 (783)
++.++- -++.+++.++- |-.+|-..++.--..|+.+...++|+..+.. ++|-.. .|..- |+.+
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 344432 34555555443 8888988898888899999999999999876 454221 12211 1111
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDG----YFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
....+.+.+.++++..++. +|....|+.-+--+ -.++.++..|.+++...... -|-.-+|...|..-.+.+++
T Consensus 377 le~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhH
Confidence 2467888888899888884 55555555544333 34677888888888776643 56677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKG-LLPDNFTFNIIINGFCKQGRMKPAIDAFMD 556 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 556 (783)
|....++++.++-+ +-|..+|......-...|+.+.|..+|.-.++.. .......|.+.|+.-...|.++.|..++++
T Consensus 454 DRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 88888888888764 4456677766666667888888888888877652 222345677777777788888888888888
Q ss_pred HHHcCCCCChhHHHHHHH
Q 039931 557 MYRTGLVPDIVTYNTLIG 574 (783)
Q Consensus 557 m~~~g~~p~~~~~~~li~ 574 (783)
+++. .+...+|.+...
T Consensus 533 lL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 533 LLDR--TQHVKVWISFAK 548 (677)
T ss_pred HHHh--cccchHHHhHHH
Confidence 8875 345556655544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-11 Score=130.90 Aligned_cols=287 Identities=14% Similarity=0.042 Sum_probs=154.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK--GLLPDNFTFNIIINGFCK 543 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~ 543 (783)
.++..++..-+..+++..-+.....-+ + -.|..||+-++...+.+.|..+.++.... .+..|..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344444444444444433333322111 1 35778888888888888888888887644 233455667788888888
Q ss_pred cCChHHHHHHHHHHHHcCC-CCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039931 544 QGRMKPAIDAFMDMYRTGL-VPD-IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAA 621 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 621 (783)
.+....+..++.++.+.-. .|+ ..+.-.+++.-...|+.+...++++-+...|+.-+ .-++....+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 8888888888888875311 222 34555666667778888888888887777665432 23334445556666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhh---ccHHHHHHHH------HH---------HHH-cC---------------CC
Q 039931 622 MMLDELVSAGIVPNTVTYNTLMNGVCC---DILDRAIIIA------AK---------LLK-MA---------------FV 667 (783)
Q Consensus 622 ~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~A~~~~------~~---------~~~-~~---------------~~ 667 (783)
++++.-... .+|.......+.+.+.+ +..+++..+- .+ +++ .| +.
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 665544321 12222111111111111 1122221111 00 000 00 01
Q ss_pred C---------CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh--hHHHHHHHHHHhcCCCcc
Q 039931 668 P---------NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI--QENAEFFQETSEKSLFLD 736 (783)
Q Consensus 668 p---------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~--~~~~~~~~~~~~~~~~~~ 736 (783)
| +.....-|+..|.+.|+++.|...+.++. ..|.+.+...|+.++... ..++-.+....+|+-+..
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~ 772 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELR 772 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcc
Confidence 1 00112346778999999999999998886 335677888888887543 233344444444444433
Q ss_pred hhhhHHHHhhhh--hhhhhhhhhhHHHhh
Q 039931 737 FLMGCMTLNVTG--DFCVQSMKLQTAAIG 763 (783)
Q Consensus 737 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 763 (783)
+....+.....| .+..|.-+.+-|+.+
T Consensus 773 ~~f~ttt~~~~~~a~~a~q~~qkkaAkk~ 801 (1088)
T KOG4318|consen 773 TLFPTTTCYYEGYAFFATQTEQKKAAKKC 801 (1088)
T ss_pred cccccchHhhhhhHHHHhhHHHHHHHHHH
Confidence 322222222223 444555555555555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-11 Score=127.01 Aligned_cols=283 Identities=10% Similarity=0.033 Sum_probs=192.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCS--SLLVGLCKKGRLPEAW 411 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~ 411 (783)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777776655532111 222333344447778888888888887764 34443222 3356677788888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCChHHHHHHH
Q 039931 412 DLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA-------VAFSAYINGLSKAGLVDEAYGVF 484 (783)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~ 484 (783)
..++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888777544 6777778888888888888888888888776554222 12233333333444455556666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039931 485 LEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP 564 (783)
Q Consensus 485 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 564 (783)
+.+.+. .+.++.....+...+...|+.++|.+++++..+. .|++... ++.+....++.+++++..+...+. .|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P 325 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HG 325 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CC
Confidence 655443 2456677777888888888888888888888775 3344221 233444568888888888888775 34
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 565 -DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 565 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
|...+.++...|.+.+++++|.+.|+.+.+ ..|+..+|..+...+.+.|+.++|.+++++-+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677888888888888888888888887 468888888888888888888888888887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-11 Score=125.05 Aligned_cols=264 Identities=16% Similarity=0.099 Sum_probs=140.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
+..||.++|..||.-||..|+.+.|- +|.-|.-...+.+...++.++.+...+|+.+.+. .|.+.||.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 34566678888888888888887777 7777777766677777788777777777766654 46677788
Q ss_pred HHHHHHHhcCChhhHHHHHHH-HHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHH-HCCCCCChHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHV-MHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQ-EEGLSPNVVVYNA 256 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ 256 (783)
.|..+|...|++.. ++..++ |. .++..+...|--..- ..++..+. ..+.-||.. +
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e-------~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPE-------RWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHH-------HHHHhhcccCcccchhHH---H
Confidence 88888888887655 222222 21 122222233322221 11211111 112223322 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRD-IAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
.|....-.|-++.+++++..+.... ..|-.+ +++-+.... ...+++........-.|+..+|..+++.-..+|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 2333334444555555554442210 111111 122222211 112222222222111466666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039931 336 RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGR 406 (783)
Q Consensus 336 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 406 (783)
+++.|..++.+|.+.|++-+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+..-+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666666666666666666555555555444 55566666666666666666666666665555555444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-09 Score=107.36 Aligned_cols=384 Identities=12% Similarity=-0.006 Sum_probs=246.1
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHH-
Q 039931 246 GLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLY- 324 (783)
Q Consensus 246 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 324 (783)
+...|...+-.....+.+.|..+.|.+.|......- +-.-..|..|.... -+.+.+ ...... ...|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHH
Confidence 333454444444445566777788888887776541 11223333333221 112211 111111 11111111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 039931 325 -DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGL--TPSSCTCSSLLVGL 401 (783)
Q Consensus 325 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~ 401 (783)
-.+..++-...+.+++.+-.+.+...|+.-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY-- 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY-- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--
Confidence 123345556667888888888888887775655555555666677888888888888887631 125566766653
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
.+..+-. +..+.+-...--+--+.|...+.+-|+-.++.++|...|++..+.++. ....|+.+..-|....+...|.
T Consensus 308 v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 3322211 111211111101123567777888888888888888888888887654 5677888888888888888898
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG 561 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 561 (783)
+-++..++.. +.|-..|-.|.++|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 8888888863 567788888888888888888888888888877544 78888888899988899999999888888765
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 562 LVPDIVTYNTLIGGYCKALDIVRADELVNKMYA----GGLDPDI--TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN 635 (783)
Q Consensus 562 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 635 (783)
..+...+..|.+.|-+.++.++|...+++-++ .|...+. ..-..|..-+.+.+++++|..........
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----- 536 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----- 536 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----
Confidence 44667888888888888888888888877665 2333222 22233556667777777776654443321
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 039931 636 TVTYNTLMNGVCCDILDRAIIIAAKLLK 663 (783)
Q Consensus 636 ~~~~~~li~~~~~~~~~~A~~~~~~~~~ 663 (783)
....++|..+++++..
T Consensus 537 ------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ------------ETECEEAKALLREIRK 552 (559)
T ss_pred ------------CchHHHHHHHHHHHHH
Confidence 1245677777776554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-11 Score=119.97 Aligned_cols=217 Identities=16% Similarity=0.110 Sum_probs=111.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
.|+.-.|...|+..++.... +...|--+..+|....+.++....|+...+.++. ++.+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444322 1112444444444455555555555544444332 333333333344444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
|++.++.. +-+...|..+.-+..+.++++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++. .
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence 55555432 122333444444444555555555555555554 2224455555555555556666666666555542 2
Q ss_pred CC---------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 564 PD---------IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 564 p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
|+ +..--.++-.- -.+++..|.+++.+..+ +.| ....|..|...-.+.|++++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 11111111111 23778888888888876 455 346688888888888888888888887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-11 Score=126.61 Aligned_cols=292 Identities=13% Similarity=0.055 Sum_probs=147.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|+++.|.+......+..-. ....|........+.|+.+.|.+.+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 57777777666665443211 12223222334456677777777776666543222222222224456666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 6666665443 5556666666666666666666666666665433211 1110000
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
.+|..++.......+.+...++++.+.+.- ..++.....+...+...|+.++|.+++++..+. +||.... ++
T Consensus 230 ---~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 230 ---QAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 011122222222223333444444333221 124445555555555566666666665555552 2333211 12
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
.+....++.+++.+..+...+..+. |+..+..+...+.+.|++++|.+.|+...+. .|+..++..+...+.+.|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 2223345556666666555555332 4455555555666666666666666666553 455555555666666666666
Q ss_pred HHHHHHHHHH
Q 039931 584 RADELVNKMY 593 (783)
Q Consensus 584 ~A~~~~~~m~ 593 (783)
+|.+++++..
T Consensus 379 ~A~~~~~~~l 388 (398)
T PRK10747 379 EAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHH
Confidence 6666665544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-10 Score=115.23 Aligned_cols=489 Identities=15% Similarity=0.104 Sum_probs=281.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHH--HHHHHH--
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDI--TVAGLC-- 332 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~-- 332 (783)
=++.+.+.|++++|.+...+++..+ +-|...+..-+-++.+.+.+++|+.+.+.-.. ..+++. +-.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 3566778899999999999999875 33556677777788899999999966554221 112222 345666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG-LCKKGRLPEAW 411 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 411 (783)
+.++.++|...++-.... +..+...-.+.+.+.|++++|+++|+.+.+++.. + +...+.+ +...+..-.+.
T Consensus 91 rlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH
Confidence 789999999999833222 3446677778899999999999999999887543 2 2222211 11111111111
Q ss_pred HHHHHHHHcCCCCCHhhHHH---HHHHHHhcCCHHHHHHHHHHHHhC-------CCCC--CHH-----HHHHHHHHHHcc
Q 039931 412 DLLCKMIEKGFPINKVAFTV---LLDGYFRIGDLIGAQSLWNELNRR-------KIFP--DAV-----AFSAYINGLSKA 474 (783)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~-------~~~p--~~~-----~~~~li~~~~~~ 474 (783)
+ +......| ..+|.. ....+...|++.+|+++++...+. +-.- +.. .--.+...+...
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 11221222 223333 345667889999999999888321 1110 111 112345567789
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCH-H-HHHHHHHHHHHC-----------CCCCCHHHH-HH
Q 039931 475 GLVDEAYGVFLEMSRIGFVPNNFAY----NSLIAGFCNRGKL-N-EALKLEREMRQK-----------GLLPDNFTF-NI 536 (783)
Q Consensus 475 g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~-~-~A~~l~~~m~~~-----------~~~p~~~~~-~~ 536 (783)
|+.++|..++...++.. ++|.... |.|+.. ..-.++ + .++..++..... ... ..... +.
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk-~~i~~N~~ 314 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK-QAIYRNNA 314 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999998875 4454322 222221 111111 1 122222221111 000 11112 22
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYC--KALDIVRADELVNKMYAGGLDPD--ITTYNIRMHGYC 612 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~ 612 (783)
++..| .+..+.+.++-..... ..|.. .+.+++..+. +.....++.+++....+. .|+ ..+.-..+....
T Consensus 315 lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 315 LLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 33333 3444555554433322 23433 3444444332 233577788888777663 343 455666678888
Q ss_pred hcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhh-c-------cHHHHHHHHHHHHHcCCCCCH-HHHHH
Q 039931 613 NIRKMNQAAMMLD--------ELVSAGIVPNTVTYNTLMNGVCC-D-------ILDRAIIIAAKLLKMAFVPNV-VTTNV 675 (783)
Q Consensus 613 ~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~-~-------~~~~A~~~~~~~~~~~~~p~~-~~~~~ 675 (783)
..|+++.|++++. .+.+.+..|..+.+..-+ +.+ + .+++|+..+..-... .+.. .+|.-
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l--~~~~~~~~~a~~vl~~Ai~~~~~~~t~--s~~l~~~~~~ 463 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVAL--YYKIKDNDSASAVLDSAIKWWRKQQTG--SIALLSLMRE 463 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHH--HHhccCCccHHHHHHHHHHHHHHhccc--chHHHhHHHH
Confidence 9999999999999 666666677765543322 222 2 344455444432211 1211 33434
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHHH---Hh-hhhhhh
Q 039931 676 LLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCMT---LN-VTGDFC 751 (783)
Q Consensus 676 ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 751 (783)
....-.++|+-++|...++++.+.+|+ |..+..-+.-+|+.+ +.+.++.+.++........ .+. ++ ..|+.+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~--d~eka~~l~k~L~p~~~l~-~vdVd~LE~s~ga~~ 539 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL--DPEKAESLSKKLPPLKGLK-AVDVDALEKSDGAKY 539 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc--CHHHHHHHhhcCCCcccch-hcCchHhhhccCcch
Confidence 444446779999999999999999986 888888888899877 6677777766644333222 221 12 224444
Q ss_pred hhh------hhhhHHHhh----hh-hhhcccCCccccccCCCC
Q 039931 752 VQS------MKLQTAAIG----RR-GRKAAVWPLPVKKVDQPD 783 (783)
Q Consensus 752 ~~~------~~~~~~~~~----~~-~~~~~~w~~~~~~~~~~~ 783 (783)
... ...+..+.+ ++ .++....|++++|.+.||
T Consensus 540 ~~~~k~ta~S~~~~~~~~~~kKKk~rKrkgk~pknyn~~~tPD 582 (652)
T KOG2376|consen 540 SEAYKKTAVSQVEEKKSKELKKKKKRKRKGKLPKNYNPKVTPD 582 (652)
T ss_pred hhhhccccccchhhccchhhhhhcccccccCCcccCCCCCCCC
Confidence 433 111222222 22 455677889999999998
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-11 Score=127.64 Aligned_cols=291 Identities=13% Similarity=0.055 Sum_probs=190.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..|+++.|.+.+.+..+.... ....+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 467778888777776665322 2333444456677778888888888877654322222233334667777888888888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H---HHHHHHccCChHHHHHHHHHHH
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS-A---YINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~---li~~~~~~g~~~~A~~~~~~m~ 488 (783)
.++.+.+..+. ++.+...+...+.+.|++++|.+.+..+.+.+.. +...+. . ...++...+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888877543 6677778888888888888888888888877654 322221 1 1111122233333344555554
Q ss_pred hCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039931 489 RIG---FVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT-FNIIINGFCKQGRMKPAIDAFMDMYRTGLVP 564 (783)
Q Consensus 489 ~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 564 (783)
+.. .+.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 432 113677788888888888999999998888888643322111 111112223457778888888887765 45
Q ss_pred C-h--hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 565 D-I--VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 565 ~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 4 45668888888999999999999853333357888888888899999999999988888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-11 Score=127.75 Aligned_cols=290 Identities=13% Similarity=-0.006 Sum_probs=152.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAV-TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAM 341 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (783)
..|+++.|.+.+.+..+. .|+.. .+-....+..+.|+.+.|.+.+.++.+....+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 478888888888877665 34433 334445667777888888888888766543333333444466677788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH---HhcCChhHHHHHHHHH
Q 039931 342 EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS-LLVGL---CKKGRLPEAWDLLCKM 417 (783)
Q Consensus 342 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~---~~~g~~~~a~~~~~~~ 417 (783)
..++.+.+..+. +...+..+...+.+.|++++|.+.+..+.+.++. +...+.. -...+ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888877544 6667777788888888888888888888777543 2222211 11111 2222222222333333
Q ss_pred HHcCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 418 IEKGF---PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVA-FSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 418 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
.+... +.++..+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 33311 12455555555566666666666666666555422211100 0111111122344444554444444331 1
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 494 PNN--FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 494 p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122 2333444445555555555555553222222344444445555555555555555555443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-10 Score=115.88 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=109.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
-.|+.-.|..-|+..++....++. .|--+...|.+..+.++....|.+..+.+.. |+.+|..-.....-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 345556666666666654333222 2555555566666666666666666555422 44455444445555555666666
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF 492 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 492 (783)
-|++.++..+. +...|..+..+..+.++++++...|++..++-+. -+..|+.....+...+++++|.+.|+..++.
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 66665555333 4445555555555556666666666665554222 3455555555566666666666666655542
Q ss_pred CCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 493 VPN-------NFAY--NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 493 ~p~-------~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
.|+ ..++ -.++.. .-.+++..|.+++++..+..++ ....|..|...-.+.|++++|+++|++.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 122 1111 111110 0124555555555555554333 3344555555555555555555555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-09 Score=104.41 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
|+..+.+-|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++...+-++. |-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHH
Confidence 4444444455555555555555555544322 3344555555555555555555555555444332 4455555555555
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 552 (783)
-.+...-|+-.|++..+.. +.|...|.+|.++|.+.+++++|++-|......|-. +...+..|...|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555554431 234445555555555555555555555555444322 33445555555555555555555
Q ss_pred HHHHHH
Q 039931 553 AFMDMY 558 (783)
Q Consensus 553 ~~~~m~ 558 (783)
.|.+.+
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-10 Score=112.63 Aligned_cols=504 Identities=13% Similarity=0.043 Sum_probs=306.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
..-+..+++-+....++.-|.-+-+++...+. ++..-.-+...+.-.|+++.|..+...-.- -..|..+......+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHH
Confidence 44566677777777778888888888777653 334444567777777888887777655432 23566677777788
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 262 (783)
+.+..++++|..++.+-.. ..+...|- .+. ++.-+- +.+. ++.. ..-....+-.--..|.
T Consensus 92 l~~lk~~~~al~vl~~~~~---~~~~f~yy------~~~~~~~l~~----n~~~----~~~~--~~~essic~lRgk~y~ 152 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHV---ETNPFSYY------EKDAANTLEL----NSAG----EDLM--INLESSICYLRGKVYV 152 (611)
T ss_pred HHHHHHHHHHHHHhcccch---hhcchhhc------chhhhceecc----Cccc----cccc--ccchhceeeeeeehhh
Confidence 8888888888887763311 11111111 111 100000 0000 0000 0000111111123455
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHhcCCHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL----PNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 338 (783)
...+.++|...|.+.... |...+..+...-.. ..-.+.+.++.+...+.. .+......+.....-...-+
T Consensus 153 al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~ 226 (611)
T KOG1173|consen 153 ALDNREEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE 226 (611)
T ss_pred hhccHHHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc
Confidence 556677888888777665 43344333221111 111111112222111110 11111111111110000000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
+....-.+..-.+..-+........+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.
T Consensus 227 ~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV 305 (611)
T KOG1173|consen 227 ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV 305 (611)
T ss_pred cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 011111101111233356666667777888899999999999888864 4566666666778888888887777777887
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA 498 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 498 (783)
+. .|..+.+|-++...|...|+..+|++.|.+....+.. =...|-.+...|+-.|..+.|+..+....+.- +-....
T Consensus 306 ~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP 382 (611)
T KOG1173|consen 306 DL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLP 382 (611)
T ss_pred Hh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcch
Confidence 77 4557888999998888889999999999887665332 24578888888999999999998888776541 111112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC----ChhHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT--GLVP----DIVTYNTL 572 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~l 572 (783)
+--+.--|.+.++.+.|.+.|.+.....+. |+...+-+.-.....+.+.+|...|+..+.. .+.+ -..+++.|
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 222344577788899999999888876443 7888888877777788899999988877632 0111 23457888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 573 IGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMN 644 (783)
Q Consensus 573 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 644 (783)
..+|.+.+.+++|+..+++.+... +-|..++.++.-.|...|+++.|++.|.+.+- +.|+..+...++.
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 888888999999999998888732 34778888888888889999999998888764 6788777666664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=139.40 Aligned_cols=261 Identities=16% Similarity=0.074 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRI 439 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (783)
.+...+.+.|++++|+++++.......+| |...|..+.......++.+.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566666777777777775443332122 3333444444555667777777777777665433 45556666665 567
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 440 GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG-FVPNNFAYNSLIAGFCNRGKLNEALKL 518 (783)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l 518 (783)
+++++|.+++....++. +++..+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766654442 345556666677777777777777777765432 234556666677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 039931 519 EREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLD 598 (783)
Q Consensus 519 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 598 (783)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7777776433 56667777777777777777777777766542 3455666777777777777777777777777632 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 599 PDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 599 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
.|..+...+.+++...|+.++|.++..+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 356666777777777777777777776654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=139.19 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=58.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 364 AAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+.. +++..+...+..+.+.++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHH
Confidence 3333344444444444444433211 22233333333 34444444444444333321 23333344444444444444
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 444 GAQSLWNELNRRK-IFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 444 ~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
++.++++.+.... ...+...|..+...+.+.|+.++|++.+++..+.. +.|....+.++..+...|+.+++.++++..
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4444444433221 12234444444444444455555555554444431 112334444444444444444444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 592 (783)
.+.. +.|+..+..+..+|...|+.++|+..|++..+.. +.|......+.+++...|+.++|.++..+.
T Consensus 207 ~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 207 LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 3332 2233344444444555555555555555544431 224444444445555555555555444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-07 Score=96.29 Aligned_cols=473 Identities=11% Similarity=0.046 Sum_probs=251.4
Q ss_pred hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHH
Q 039931 211 AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEE-GLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTF 289 (783)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 289 (783)
.|...+..+.++|++... +..|+..... -+......|...+......+-++-+..+|++.++. ++..-
T Consensus 104 Iwl~Ylq~l~~Q~~iT~t-------R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ 172 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRT-------RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAR 172 (835)
T ss_pred HHHHHHHHHHhcchHHHH-------HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHH
Confidence 344444444455555444 4444444332 11122335666666666666666666666666653 33335
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCC------CCCcHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHH
Q 039931 290 NIIVSGHCKYGGMEDGDRLLRDLSVSG------LLPNCTLYDITVAGLCWAGRLD---EAMEFFEDMFEKGISPSIFAFN 360 (783)
Q Consensus 290 ~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~ 360 (783)
...|..+++.+++++|.+.+..++... .+.+...|.-+-+...++-+.- ....+++.+..+-...=-..|.
T Consensus 173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 555566666666666666666554321 1223334444444333332222 1222333333221111133466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------ChhHHHHHHHHHH
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKG----------------------RLPEAWDLLCKMI 418 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~~~ 418 (783)
+|.+-|.+.|.+++|.++|++....- .++.-|+.+.+.|..-. +++-.+.-|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 66666666666666666666665531 23333344444433211 1223333344444
Q ss_pred HcCC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHccCChHHHH
Q 039931 419 EKGF-----------PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFP------DAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 419 ~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~ 481 (783)
..+. +.++..|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 3321 123333333322 2346677777777777653 112 2346778888888899999999
Q ss_pred HHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-------CHHHHHHHHHHH
Q 039931 482 GVFLEMSRIGFVPN---NFAYNSLIAGFCNRGKLNEALKLEREMRQKG----------LLP-------DNFTFNIIINGF 541 (783)
Q Consensus 482 ~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----------~~p-------~~~~~~~li~~~ 541 (783)
.+|++..+...+-- ..+|......-.+..+++.|+++.+.....- ..| +...|...++..
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99988876533211 2344444444456677888888777655321 111 233456666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCH
Q 039931 542 CKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCN---IRKM 617 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~---~g~~ 617 (783)
-..|-++....+++.+++..+- ++.........+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+ ..++
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 6778888888888888765432 2222222222233455678888888776653223444 556666655443 2478
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHH
Q 039931 618 NQAAMMLDELVSAGIVPNTVTYNTLMNGVCC---DILDRAIIIAAKLLKMAFVPNV--VTTNVLLSHFCKQGMPEKTLLW 692 (783)
Q Consensus 618 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~ 692 (783)
+.|..+|++.++ |..|...-+-.|+.+-.. |....|+.+++++... +.+.. ..|+.+|.--...=-+..-..+
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 888899988888 555655433333333221 5667788888876542 34433 5677777643333234455677
Q ss_pred HHHHhhcCCC
Q 039931 693 GQKLSEISFD 702 (783)
Q Consensus 693 ~~~~~~~~~~ 702 (783)
++++++.=|+
T Consensus 645 YekaIe~Lp~ 654 (835)
T KOG2047|consen 645 YEKAIESLPD 654 (835)
T ss_pred HHHHHHhCCh
Confidence 7777776544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-11 Score=127.27 Aligned_cols=285 Identities=13% Similarity=0.089 Sum_probs=178.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 406 RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI--FPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
+..+|...|+.+...-.. ...+...+..+|...+++++|.++|+.+.+..+ .-+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777777774444222 345666677777788888888888877766521 11556666666544321 12222
Q ss_pred HH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039931 484 FL-EMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562 (783)
Q Consensus 484 ~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 562 (783)
+. ++.+. -+-.+.+|.++.++|.-+++.+.|++.|++.++.+.. ...+|+.+.+-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 22 22222 1345667777777777777777777777777765322 5566776666677777777777777777652
Q ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039931 563 VP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640 (783)
Q Consensus 563 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 640 (783)
.| +-..|..|.-.|.+.++++.|+-.|+++.+ +.| +.+....+...+-+.|+.++|++++++......+--..-|.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 33 334556666777777777888777777776 455 45666667777777777788888777776532221112232
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC
Q 039931 641 TLMNGVCCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDF 703 (783)
Q Consensus 641 ~li~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (783)
...--++.+++++|+..++++.+ +.|+. ..+..+...|.+.|+.+.|+..+--+..++|+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 22222334677777777777777 56655 455566667777777777777777777777663
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-10 Score=107.64 Aligned_cols=289 Identities=16% Similarity=0.085 Sum_probs=186.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCCHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN---CTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 340 (783)
.++.++|.++|-+|.+.... +..+.-+|.+.|.+.|..+.|.+++..+.++.-.+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999885322 445566777888888999999999888877522211 22334556667788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 341 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
+.+|..+.+.+.- -......|+..|-...++++|++.-+++.+.+-.+.. ..|.-+...+....+++.|...+.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888888775322 3445667788888888888888888877776544332 2244444455556777778888877
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 039931 417 MIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN 496 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 496 (783)
..+.+.. ++..--.+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+..+.+.. ++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 7776443 4455556667777778888888888777777544344556667777777777777777777777653 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 039931 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK---QGRMKPAIDAFMDMYR 559 (783)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 559 (783)
..-..+.+......-.+.|...+.+-..+ +|+...+..+|+.-.. .|...+-+.+++.|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333333333334445555554444443 5677777777765533 2334455555555553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-07 Score=97.09 Aligned_cols=448 Identities=13% Similarity=0.110 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..|...+.+| ..+++...++..+.+++ +++....|.....-.+...|+-++|.......++.++ .+.+.|..++-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHH
Confidence 4566666655 45677778888877777 3455556666666667777888888888877777655 5667788777777
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
-...++++|+..+...++.+ +.|...+.-+--.-++.|+++..... -.++++..+. ....|..++.++.-.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t---r~~LLql~~~-----~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET---RNQLLQLRPS-----QRASWIGFAVAQHLL 156 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHhhhh-----hHHHHHHHHHHHHHH
Confidence 77888888888888888765 45566666555555555666544210 0122222222 556788888888888
Q ss_pred CChhHHHHHHHHHHhCC-CCCCHhHHHHHHH------HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH
Q 039931 265 RDIDQANMLYEEMRSRD-IAPDAVTFNIIVS------GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRL 337 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (783)
|+...|..+.++..+.- -.|+...|..... ...+.|..++|.+.+..-... +......-..-...+.+.+++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhH
Confidence 99999999998887763 2455555544332 234455666665555443221 111111222233445556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHH
Q 039931 338 DEAMEFFEDMFEKGISPSIFAFNSIIA-AYSRAGLEENAF-EAYKIMHQFGLTPSSCTCSSLLVGLCK-KGRLPEAWDLL 414 (783)
Q Consensus 338 ~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~ 414 (783)
++|..++..++.. .||..-|+.... ++.+-.+.-++. .+|....+. .|....-..+--.... ..-.+..-..+
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHH
Confidence 6666666666654 334443333332 222222222232 344433332 1111110000000111 11112222333
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 039931 415 CKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 494 (783)
....+.|+++ ++..+...|-.....+ +++++. ..|...+.+...-...+.. . .-+|
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lv--------t~y~~~L~~~~~f~~~D~~-------~--~E~P 367 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLV--------TSYQHSLSGTGMFNFLDDG-------K--QEPP 367 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHH--------HHHHhhcccccCCCccccc-------c--cCCc
Confidence 3444444432 2222222221111000 111110 0000000000000000000 0 0133
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 039931 495 NNF--AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPD-NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNT 571 (783)
Q Consensus 495 ~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 571 (783)
... |+..++..+-+.|+++.|..+++....+ .|+ +..|..-...+...|.+++|...+++..+.. .||...=.-
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 332 3344566666777777777777776655 333 2334444566667777777777777766543 344333323
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 039931 572 LIGGYCKALDIVRADELVNKMYAGG 596 (783)
Q Consensus 572 li~~~~~~g~~~~A~~~~~~m~~~g 596 (783)
-..-..++++.++|.++.....+.|
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcc
Confidence 3444455667777777776666654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-09 Score=105.30 Aligned_cols=475 Identities=14% Similarity=0.073 Sum_probs=304.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
...||..--.+.++|.-.|+.+.|..+...-.-. ..+..........+.+..++++|..++.... +..+++.+-.
T Consensus 45 l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~ 119 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGH---VETNPFSYYE 119 (611)
T ss_pred ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhhcchhhcc
Confidence 3456666778999999999999998887654322 3567778888899999999999999887431 1122222211
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLN 259 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 259 (783)
-=. ...-..+.+.+.. --+.-.+.|--.|++-.|+...++|+..+.+.... |+..|.++..
T Consensus 120 ~~~--~~~l~~n~~~~~~-------------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~ 180 (611)
T KOG1173|consen 120 KDA--ANTLELNSAGEDL-------------MINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEK 180 (611)
T ss_pred hhh--hceeccCcccccc-------------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHH
Confidence 000 0000011111000 01112223334455555544444456666555443 4434333322
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC----CCCHhHHHHHHHHH-HccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 260 GYVKARDIDQANMLYEEMRSRDI----APDAVTFNIIVSGH-CKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
.-. ...-.+.+.|+.+..... .-+......+.... ++..+. .....-.+..-.+...+......-..-+...
T Consensus 181 lvs--~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~ 257 (611)
T KOG1173|consen 181 LVS--AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYG 257 (611)
T ss_pred HHH--HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHc
Confidence 211 111223333333332211 11222222222211 111110 0000000011112233455555566667788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.+.|
T Consensus 258 c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred ChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 99999999999998863 3355666667778899999988888888888863 446789999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 039931 415 CKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 494 (783)
.+....+.. =...|-.+...|.-.|.-++|...+...-+.-.. ....+--+.--|.+.+..+-|.+.|.+.... .+.
T Consensus 336 SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~ 412 (611)
T KOG1173|consen 336 SKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APS 412 (611)
T ss_pred HHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCC
Confidence 988765433 3457889999999999999999999877664111 1111222334577889999999999998875 355
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQK--GLL----PDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT 568 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 568 (783)
|+..++-+.-...+.+.+.+|..+|+..... ... --..+++.|..+|.+.+++++|+..+++.+... +.|..+
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~ 491 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAST 491 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhH
Confidence 7777887777777889999999999987632 111 134568889999999999999999999999762 458899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMH 609 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 609 (783)
+.++.-.|...|+++.|++.|.+.+. +.||..+-..++.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 99999999999999999999999885 7898877666665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-09 Score=105.99 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=193.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
.|++.+|+++..+-.+.+-. ....|..-+.+--+.|+.+.+-.++.+.-+..-.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776665444 34445555666667777777777777776653344555566666677777777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHH
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA-------VAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
++++.+.+.. ++........+|.+.|++.....++..+.+.+.-.|. .+|+.+++-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776544 6667777777777788888877777777777655443 3455555555555555554555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039931 487 MSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566 (783)
Q Consensus 487 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 566 (783)
..+. .+.++..-.+++.-+.++|+.++|.++..+..+++..|+. ..+ -.+.+-++.+.-++..++..+. .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5433 3445556667777778888888888888888877666552 112 2345566666666666665543 22345
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+..+|.+++++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6777888888888888888888887776 468888888888888888888888888877653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-11 Score=124.37 Aligned_cols=283 Identities=13% Similarity=0.067 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 267 IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL--LPNCTLYDITVAGLCWAGRLDEAMEFF 344 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (783)
..+|+..|....+. +.-.......+..+|...+++++|+++|+.+.+... ..+..+|.+.+..+-+.-.+. -+-
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HHH
Confidence 45666666663332 221223344455566666666666666666655422 134555655554432221111 111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 345 EDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 345 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
+.+.+... -.+.+|-++.+.|.-+++.+.|++.|++..+.+ | ...+|+.+..-+....++|.|...|+..+.....
T Consensus 411 q~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 411 QDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22222211 156677777777777777777777777776643 3 5566776666777777777777777766655222
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
+-.+|-.+...|.+.++++.|+-.|+...+-++. +.+....+...+-+.|+.++|++++++..... +-|+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 3334445666777777777777777777766554 56666666667777777777777777776653 22333333345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
..+...+++++|+..++++.+.-+. +...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5556667777777777777765222 4555666667777777777777777776664
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-10 Score=105.37 Aligned_cols=287 Identities=13% Similarity=0.064 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS---SCTCSSLLVGLCKKGRLPEAW 411 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~ 411 (783)
.+.++|.++|-+|.+.... +..+.-+|.+.|-+.|..+.|+.+.+.+.+..--+. ....-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4455555555555553222 333444555555555555555555555544210000 112233444455566666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHH
Q 039931 412 DLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD----AVAFSAYINGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 487 (783)
.+|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 666666554221 334455566666666666666666666555543332 123455555555666777777777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039931 488 SRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIV 567 (783)
Q Consensus 488 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 567 (783)
.+.. +..+..-..+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++...++..+.+. .++..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCcc
Confidence 6643 12222333445556667777777777777776654444556666677777777777777777777664 33333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN---IRKMNQAAMMLDELV 628 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 628 (783)
.-..+...-....-.+.|..++.+-+.. .|+...+..+++.... .|...+.+.++..|.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3344444333333445555444443332 5777666666655433 244555566666665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-09 Score=105.44 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=179.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|++..|.++..+-.+.+-. ....|..-..+--+.|+.+.+-+++.++.+....++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68999999999887776544 34456666677778899999999999888876667777777788888888999999888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
.+++.+.++. +........++|.+.|++.....++..+.+.|.-.++..-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 8888887665 677778888888888888888888888888876544321100
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
...+|+.+++-....+..+.-...|+..... ...++..-.+++.-+.++|+.++|.++..+..+.+..|...+ .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----H
Confidence 0112333333333333333333333333221 112344444555555566666666666666555544444111 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
-.+.+-++.+.-++..++-.+.... ++-.+.+|...|.+.+.+.+|.+.|+..++. .|+..+|+-+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 1233445555555544444443222 3455555666666666666666666655553 466666666666666666666
Q ss_pred HHHHHHHHHHH
Q 039931 584 RADELVNKMYA 594 (783)
Q Consensus 584 ~A~~~~~~m~~ 594 (783)
+|.+..++...
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-08 Score=106.63 Aligned_cols=462 Identities=15% Similarity=0.092 Sum_probs=243.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH---HHccCChhHH-------------------HHH----HHHHHhCC
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSG---HCKYGGMEDG-------------------DRL----LRDLSVSG 316 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~A-------------------~~~----~~~~~~~~ 316 (783)
+.+..++++.-+.....++...+..++..+..+ |...++.+++ ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 446677777777777777666666666655443 3344555444 111 11222223
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039931 317 LLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS 396 (783)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 396 (783)
+.-+..+|..|.-++..+|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-......|+..+-..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4446666777777777778888777777776653222 556677777777777777777777776655433344443333
Q ss_pred HHHH-H-HhcCChhHHHHHHHHHHHc--CC--CCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCC
Q 039931 397 LLVG-L-CKKGRLPEAWDLLCKMIEK--GF--PINKVAFTVLLDGYFRI-----------GDLIGAQSLWNELNRRKIFP 459 (783)
Q Consensus 397 li~~-~-~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p 459 (783)
++.. | .+.+..++++++-.+++.. +. ...+..|-.+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3332 2 2345666666666665551 11 11233444444444321 1224556666666555433
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIIN 539 (783)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 539 (783)
|+...-.+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+.....-.. |......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhh
Confidence 222222233345566777777777777777654556667777776777777777777777765543111 1111111122
Q ss_pred HHHhcCChHHHHHHHHHHHHc---------------------CC-----CC--ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 540 GFCKQGRMKPAIDAFMDMYRT---------------------GL-----VP--DIVTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~---------------------g~-----~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.-..-++.++|+.....++.. |+ .| ...++..+..-... +.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-
Confidence 222344555554443333210 00 00 01112111111110 0000000000
Q ss_pred HHHCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---hccHHHHHHHHHH
Q 039931 592 MYAGGLDP--D------ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC---CDILDRAIIIAAK 660 (783)
Q Consensus 592 m~~~g~~p--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~~~~~A~~~~~~ 660 (783)
+.+....| + ...|......+.+.++.++|...+.+... +.|-. .+..-+.|.+ ++..++|.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~-~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS-ASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh-HHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111112 2 12344555677777777777777776654 23322 2222233322 4677778877777
Q ss_pred HHHcCCCCCH-HHHHHHHHHHHhcCChhhHHH--HHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcch
Q 039931 661 LLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLL--WGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDF 737 (783)
Q Consensus 661 ~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~ 737 (783)
.+. +.|+. ...+++...+.+.|+..-|.. ++..+.+++|. ++.+|..|+....+ +++.+.+-+-+..++.++.
T Consensus 710 Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~-~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 710 ALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKK-LGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH-ccchHHHHHHHHHHHhhcc
Confidence 766 55655 456677777777777766666 77788888876 77788777777543 4444444444444444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-07 Score=100.38 Aligned_cols=596 Identities=10% Similarity=-0.045 Sum_probs=348.5
Q ss_pred hHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 86 SKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDM 165 (783)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~ 165 (783)
....+..+.++.+..+.=..+|..|...|+..-+...|.+.|+++.+.+ ..+..++......|++..+++.|....-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455666666666555555688999999988888889999999998887 466778888999999999999998884444
Q ss_pred HhcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 166 IHLGPR-PSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 166 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
.+..+. .-..-|--..-.|...++...|..-|+...+.. +.|...|..+..+|..+|++..| .++|++...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~A-------lKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHA-------LKVFTKASL 624 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehH-------HHhhhhhHh
Confidence 333221 011123334445667888889999999888765 56788999999999999999888 577877665
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHh---
Q 039931 245 EGLSPNV-VVYNALLNGYVKARDIDQANMLYEEMRSR------DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSV--- 314 (783)
Q Consensus 245 ~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--- 314 (783)
.. |+. ..---.....|-.|.+.+|+..+...... +..--..++..+...+.-.|-..+|..++++-++
T Consensus 625 Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 625 LR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred cC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 32 222 22222334566789999999988877642 1111122333333333333444444444444322
Q ss_pred ----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---H---HHHHHHHHHHh
Q 039931 315 ----SGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLE---E---NAFEAYKIMHQ 384 (783)
Q Consensus 315 ----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~ 384 (783)
.....+...|-. ...|..+|-...- . .|+......+..-.-..+.. + -+.+.+-.-.+
T Consensus 703 ~~l~h~~~~~~~~Wi~----------asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls 770 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIV----------ASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS 770 (1238)
T ss_pred HHHHHhhhhhHHHHHH----------HhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH
Confidence 111111111111 1223333333321 0 12222222222212222211 1 11111111111
Q ss_pred CCCCCCHHHHHHHHHHHHh----c----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 039931 385 FGLTPSSCTCSSLLVGLCK----K----GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK 456 (783)
Q Consensus 385 ~~~~p~~~~~~~li~~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 456 (783)
+..+..+|..++..|.+ . .+...|+..+.+.++..- -+..+|+.|.-. ...|.+.-|.--|-+-....
T Consensus 771 --l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 771 --LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred --HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 12234455555554443 1 123466777777666532 266777777655 55566666666665554443
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHH--CCCCCCHH
Q 039931 457 IFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLERE--MRQ--KGLLPDNF 532 (783)
Q Consensus 457 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~--m~~--~~~~p~~~ 532 (783)
+. ...+|..+.-.+.++.+++.|...|...+... +.|...|..........|+.-++..+|.. ... .|-.|+..
T Consensus 847 p~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 847 PT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred cc-chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 33 66778888888889999999999999887753 34555565555555567877788877775 221 23344544
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH----------HHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMD----------MYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAG-GLDPDI 601 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~----------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 601 (783)
-|-.........|+.++-+..-+. ... |.+.+...|.+.....-..+.+..|.++..+...- ...-|.
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~ 1003 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDE 1003 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444556665554333332 222 33445778888888888888888888877775531 123456
Q ss_pred HHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcC-CCCCH-HHHHH
Q 039931 602 TTYNI----RMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMA-FVPNV-VTTNV 675 (783)
Q Consensus 602 ~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~-~~p~~-~~~~~ 675 (783)
..|+. ..+.++..|.++.|...+..... ..|...-..-+..+..++++++.+.|++++.-. -..|. +....
T Consensus 1004 sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1004 SQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 66663 34667778888877655443221 123333344444467789999999999977521 12232 22333
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 039931 676 LLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAY 715 (783)
Q Consensus 676 ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y 715 (783)
++-.....+..+.|...+-+...+.+. +..+...|.-.|
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ls~~-~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKSLSKV-QASSLLPLPAVY 1119 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHHhCcc-chhhHHHHHHHH
Confidence 444556778889999888888877764 777666666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-07 Score=96.61 Aligned_cols=607 Identities=13% Similarity=0.014 Sum_probs=317.0
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 89 MVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE--SAITILFKSLLRVGDYGSVWKLFRDMI 166 (783)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~l~~~g~~~~A~~~~~~~~ 166 (783)
+...+...+...+.+...+..+...|++....+.|..+.-..-+.. +.-. ..|-.+.-.+...+++.+|+..|...+
T Consensus 511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 3444445555556677778888888888888888887744333321 1111 123334444667788888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHC
Q 039931 167 HLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEE 245 (783)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~ 245 (783)
+..| .|...|..++.+|.+.|++..|.++|.+..... |+ .+.---..-.-|..|++++|+..++.-...+..-. .
T Consensus 590 R~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~ 665 (1238)
T KOG1127|consen 590 RTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-T 665 (1238)
T ss_pred cCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-H
Confidence 7765 577788888888888888888888888776543 33 22222233345666777777543221111111000 0
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHH-------HhCCCCCCHhHHHHHHHH-----------------------
Q 039931 246 GLSPNVVVYNALLNGYVKARDIDQANMLYEEM-------RSRDIAPDAVTFNIIVSG----------------------- 295 (783)
Q Consensus 246 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~t~~~ll~~----------------------- 295 (783)
+..--..++-.+...+.-.|-..+|.+.++.- ......-+...|-.+-.+
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q 745 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQ 745 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHH
Confidence 00001122222222222222222333332222 111111122222222111
Q ss_pred HHccCCh---h---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 296 HCKYGGM---E---DGDRLLRDLSVSGLLPNCTLYDITVAGLCW----A----GRLDEAMEFFEDMFEKGISPSIFAFNS 361 (783)
Q Consensus 296 ~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ 361 (783)
.-..+.. + -|.+.+-.-.+ ...+..+|..|+..|.+ . .+...|+..+.+.++..-. +..+||.
T Consensus 746 ~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~Wna 822 (1238)
T KOG1127|consen 746 LEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNA 822 (1238)
T ss_pred HHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHH
Confidence 1111111 1 00011100000 11122233333333322 1 1234667777776654222 6677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 039931 362 IIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGD 441 (783)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 441 (783)
|.-. ...|++.-|..-|-+-.... +.+..+|..+.-.+.+..+++.|...|.......+. |...|-......-..|+
T Consensus 823 LGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 823 LGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGR 899 (1238)
T ss_pred HHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHH
Confidence 6544 55567777766666555443 335667777777788888888888888887776433 66666666666667787
Q ss_pred HHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHh
Q 039931 442 LIGAQSLWNELN----RRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRI---------GFVPNNFAYNSLIAGFCN 508 (783)
Q Consensus 442 ~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~~~~~~li~~~~~ 508 (783)
.-++..+|..-- ..|-.|+..-|-........+|+.++-+...+.+... +.+.+...|.......-+
T Consensus 900 ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEh 979 (1238)
T KOG1127|consen 900 IIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEH 979 (1238)
T ss_pred HHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHH
Confidence 777777776521 2233445555544444455666665544444433221 334456677777766667
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 509 RGKLNEALKLEREMRQK-GLLPDNFTFNII----INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~-~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
.+.+..|..+..+.... ..+-+...|+.+ ...++..|.++.|..-+..... ..+..+..+-+.. .-.++++
T Consensus 980 L~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~ 1055 (1238)
T KOG1127|consen 980 LEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFF 1055 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHH
Confidence 77777776666554321 012344555533 3344556666665544432211 1122222222333 3467999
Q ss_pred HHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhccHHHHHHHHHH
Q 039931 584 RADELVNKMYAG-GLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG-VCCDILDRAIIIAAK 660 (783)
Q Consensus 584 ~A~~~~~~m~~~-g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~A~~~~~~ 660 (783)
++.+.|+++..- .-..|. .....++-+....+.-+.|..++-+.... -.|+..+.-++-.. ....+-.....+.++
T Consensus 1056 ~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssailee 1134 (1238)
T KOG1127|consen 1056 SSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEE 1134 (1238)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999998872 112232 33455556666777788888777666542 12333222221111 111111111112222
Q ss_pred HHH------cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 661 LLK------MAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 661 ~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
+.+ ...+|- -..-+ -|.+.|+-....+.+++....+|. |+..|..|..-|+
T Consensus 1135 l~kl~k~e~~~~~~~--ll~e~--i~~~~~r~~~vk~~~qr~~h~~P~-~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1135 LEKLLKLEWFCWPPG--LLKEL--IYALQGRSVAVKKQIQRAVHSNPG-DPALWSLLSVRYA 1191 (1238)
T ss_pred HHHhhhhHHhccChh--HHHHH--HHHHhhhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 221 112221 11112 357789999999999999999997 9999998886554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-07 Score=96.66 Aligned_cols=249 Identities=12% Similarity=0.057 Sum_probs=139.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
-+..+.+|+..|+++++.-.. .+.|..|+. -.+++.+.+ -..+.+.++...+.+..+ ...-.+.+...+..
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme 554 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFME 554 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHH
Confidence 345666777777777555443 456777774 456666666 678888888888876433 33445666777777
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFF-AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
.+....+..++-..++.. .|+.. .-+.|+..-.. +- -++-+.+...+.- +..-|-.+.+.|.++|
T Consensus 555 ~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~-~a-----------PqVADAILgN~mF-tHyDra~IAqLCEKAG 620 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLV-HA-----------PQVADAILGNDMF-THYDRAEIAQLCEKAG 620 (1666)
T ss_pred HHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhc-cc-----------hHHHHHHHhcccc-ccccHHHHHHHHHhcc
Confidence 777777777776666543 34432 22333322211 11 2333444433322 2222666677777777
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhHHHHH-----HHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039931 266 DIDQANMLYEEMRSRDIAPDAVTFNII-----VSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p~~~t~~~l-----l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (783)
-...|++.|.++... . -.+..+.+ +-.|.-.-.++++.+.++.|...++..|..+...+..-|+..=-.+.-
T Consensus 621 L~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~l 697 (1666)
T KOG0985|consen 621 LLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQAL 697 (1666)
T ss_pred hHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHH
Confidence 777777776665431 1 11111111 112333345666777777777766666666655555556555555555
Q ss_pred HHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 341 MEFFEDMFEK-----------GISPSIFAFNSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 341 ~~~~~~m~~~-----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (783)
+++|+....- ++.-|......-|.+.|+.|++.+..++.++
T Consensus 698 i~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 698 IELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 5555554431 1333555555667777777777666665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-06 Score=90.32 Aligned_cols=407 Identities=15% Similarity=0.079 Sum_probs=198.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
.+|..+.+.....-.+...|+-++|....+..++.+ .-+.+.|..+.-.+....++++|++.|..++..++ .|...|.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilr 113 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILR 113 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 344444445444445555666667776666666554 33445565555555555667777777777766554 4555555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC-CCCChHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG-LSPNVVVYNAL 257 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l 257 (783)
-+.-.-+..|+++.....-.+..+.. +.....|..+.-++--.|+...|. .+.++..+.- -.|+...|...
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~-------~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL-------EILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccCCCHHHHHHH
Confidence 55544555566665555555555432 233445555555555566666663 3444443322 12344443333
Q ss_pred HH------HHHhcCChhHHHHHHHHHHhCCCCCCHhHH-HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHH-HHHH
Q 039931 258 LN------GYVKARDIDQANMLYEEMRSRDIAPDAVTF-NIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYD-ITVA 329 (783)
Q Consensus 258 i~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~ 329 (783)
.. ...+.|.+++|++.+..-... +. |...+ .+-...+.+.+++++|..++..+...+ ||..-|. .+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH
Confidence 22 234456666666665544322 11 22222 233445666777777777777777653 4444333 3334
Q ss_pred HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 039931 330 GLCWAGRLDEAM-EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLP 408 (783)
Q Consensus 330 ~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 408 (783)
++.+-.+..++. .+|....+.-.. ....-..=++......-.+..-+++..+.+.|+++ ++..+...|-.....+
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~ 337 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA 337 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH
Confidence 443333333444 555555443111 10000000111111122233344556666666543 2333333332222211
Q ss_pred HHHHHHHHHHH----cC----------CCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 039931 409 EAWDLLCKMIE----KG----------FPINKVAFT--VLLDGYFRIGDLIGAQSLWNELNRRKIFPD-AVAFSAYINGL 471 (783)
Q Consensus 409 ~a~~~~~~~~~----~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~ 471 (783)
-..++.-.+.. .| -+|.+..|+ .++..+-+.|+++.|...++..... .|+ +..|..-.+.+
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIF 415 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHH
Confidence 11111111111 00 133333333 3455666677777777777766654 222 23344444666
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKG 526 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 526 (783)
...|.+++|...+++..+.. .||...-.--..-..+.++.++|.++.....+.|
T Consensus 416 kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 66777777777777766543 3343333234444456666777777666666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-07 Score=99.47 Aligned_cols=482 Identities=14% Similarity=0.046 Sum_probs=285.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSL---LRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIR 191 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 191 (783)
.+.+..++++.-+......++.-+..++..+...+ ...|+.+++ .+...+ ..-..| ..+.+
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli-~es~i~--------------Re~~~ 301 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLI-EESLIP--------------RENIE 301 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHH-Hhhccc--------------cccHH
Confidence 34566778888888888777766666665544332 233444444 222222 111112 22222
Q ss_pred hHHH----HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 039931 192 IGES----LLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDI 267 (783)
Q Consensus 192 ~A~~----~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 267 (783)
++.- .+.++....+..|...|..|.-++..+|+++.+ -+.|++....- .-....|+.+...|...|.-
T Consensus 302 d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~l-------ae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 302 DAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVL-------AEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 2221 223333333456788888888889999999887 45666654322 22567899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHH-HHHH-ccCChhHHHHHHHHHHhC--CC--CCcHHHHHHHHHHHHh--------
Q 039931 268 DQANMLYEEMRSRDIAPDAVTFNIIV-SGHC-KYGGMEDGDRLLRDLSVS--GL--LPNCTLYDITVAGLCW-------- 333 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~-------- 333 (783)
..|..+++.-......|+..+--.++ ..|. +.+..+++..+-.++... +. ......|-.+.-+|..
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 99999998876654345444444443 3333 457788887777777652 11 1223334444444432
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 334 ---AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 334 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
.....++.+.+++..+.+.. |......+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|
T Consensus 454 seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 12355788888888876554 33334444556778889999999999999886667888899888889999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------CC-----C-CC-HH
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR---------------------KI-----F-PD-AV 462 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~-----~-p~-~~ 462 (783)
+.+.+..... ...|......-+..-..-++.++++.....+... |. . .+ +.
T Consensus 533 l~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 533 LDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 9999887765 1212222222233333456666665554443321 00 0 00 11
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP--N------NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
++..+. +... -+.+.+..-.. +.+....| + ...|......+.+.+..++|...+.+..+..+ .....|
T Consensus 612 ~sr~ls-~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLS-SLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVY 687 (799)
T ss_pred hhHHHH-HHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHH
Confidence 111111 1111 00000000000 11111112 2 12234455566677777777777776665532 245556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADE--LVNKMYAGGLDPDITTYNIRMHGY 611 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~ 611 (783)
......+...|+.++|.+.|...+.. .|+ +.+..++...+.+.|+..-|.. ++..+.+.+ +.+...|..+...+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVF 764 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 66666677778888888888777763 454 5677777788888887766666 777777743 23677788888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 039931 612 CNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 612 ~~~g~~~~A~~~~~~m~~ 629 (783)
-+.|+.++|.+.|....+
T Consensus 765 k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHccchHHHHHHHHHHHh
Confidence 888888888888877664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-07 Score=91.36 Aligned_cols=218 Identities=15% Similarity=0.084 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHH
Q 039931 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-----FCNRGKLNEALK 517 (783)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~ 517 (783)
+.|++++-.+.+. .| ..--.|+--|.+.+++.+|..+.+++.-. .|-......+..+ ......+.-|.+
T Consensus 271 EgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 271 EGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred ccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 4555555544443 11 12223344566667777776666655421 2322222222221 112223445666
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 039931 518 LEREMRQKGLLPDN-FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG 596 (783)
Q Consensus 518 l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 596 (783)
.|+-.-..+...|. .--.++...+.-..++++.+.+++.+...-...|...+ .+..+++..|++.+|+++|-+.....
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence 66555444433332 12334455555566677777777766654322333333 46677777777888877777665422
Q ss_pred CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--hccHHHHHHHHHHHHHcCCCCCHHHH
Q 039931 597 LDPDITTYNI-RMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC--CDILDRAIIIAAKLLKMAFVPNVVTT 673 (783)
Q Consensus 597 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~A~~~~~~~~~~~~~p~~~~~ 673 (783)
+ .|..+|.+ |.++|.++++.+-|.+++-++ +-..+..+...+|..-| .+.+--|-+.|+.+.. ..|++.-|
T Consensus 424 i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 424 I-KNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred h-hhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 2 24445543 447777777777776665443 22233444555554433 2445555555665555 45666665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-07 Score=88.11 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=53.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHHcCC
Q 039931 503 IAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYN-TLIGGYCKALD 581 (783)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~ 581 (783)
...+.-..++++.+..++.+..--...|...+| +..+++..|++.+|.++|-+.....++ |..+|. .|.++|.+.++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 333334444555555555554433333333333 345555555555555555444332222 233332 33344455555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 039931 582 IVRADELVNKMYAGGLDPDITTYNIRM-HGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 582 ~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 628 (783)
++-|.+++-++. .+.+..+.-.+| .-|.+++.+--|.+.|+.+.
T Consensus 444 P~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 444 PQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred chHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 555554443332 122222322222 44555555555555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-12 Score=88.54 Aligned_cols=50 Identities=48% Similarity=0.951 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 039931 249 PNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK 298 (783)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 298 (783)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-07 Score=91.74 Aligned_cols=310 Identities=14% Similarity=0.064 Sum_probs=215.2
Q ss_pred CCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 039931 388 TPSSCTCSSLLVG--LCKKGRLPEAWDLLCKMIEK-GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAF 464 (783)
Q Consensus 388 ~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 464 (783)
.|+..+...-+.+ .+-.++...+.+.+-.+... -++-|+.....+...+...|+.++|...|++....++. ++...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 3444444433443 34456666666655544433 35667888899999999999999999999988775321 22222
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 465 SAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
......+.+.|+.+....+...+.... .-....|..-.......++++.|+.+-++-++.... +...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 333444567888888887777776531 112222333333445677889999988888876443 455555555678889
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhc-CCHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRM-HGYCNI-RKMNQAA 621 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~-g~~~~A~ 621 (783)
|+.++|.-.|+..... .| +..+|..|+..|...|++.||.-..+...+. +.-+..+...+. ..+.-. .--++|.
T Consensus 348 ~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 9999999999988864 55 7889999999999999999999888777652 233455555442 333322 2346788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 039931 622 MMLDELVSAGIVPNTVTYNTLMNGVCC--DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 622 ~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
.++++-+. +.|+-.--...+.-+|. |..+.++.++++.+. ..||....+.|.+.+...+.+.+|+..+..++.+
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88887665 56765544444555553 789999999999888 6799999999999999999999999999999999
Q ss_pred CCCCCHHHH
Q 039931 700 SFDFDETSY 708 (783)
Q Consensus 700 ~~~~d~~~~ 708 (783)
+|+ |..+.
T Consensus 501 dP~-~~~sl 508 (564)
T KOG1174|consen 501 DPK-SKRTL 508 (564)
T ss_pred Ccc-chHHH
Confidence 987 66554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-06 Score=90.82 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=117.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH--HHHHHH--
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI--LINAYC-- 220 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~-- 220 (783)
=++.+...|++++|...-.+++..+| .+...+..-+-+++..+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 34445566777777777777776653 5555666666677777777777754443211 111222 345565
Q ss_pred hcCCcchHhhhccchHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--HHHHHHHHHH
Q 039931 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNV-VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV--TFNIIVSGHC 297 (783)
Q Consensus 221 ~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~ 297 (783)
+.++.++|+ ..++ |+.++. .+...-...+.+.|++++|+++|+.+.+.+.. |.. .-..++.+-
T Consensus 91 rlnk~Deal-------k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~- 156 (652)
T KOG2376|consen 91 RLNKLDEAL-------KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA- 156 (652)
T ss_pred HcccHHHHH-------HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH-
Confidence 456666663 2333 333333 25555556777888888888888888776432 211 111121110
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHH
Q 039931 298 KYGGMEDGDRLLRDLSVSGLLPNCTLYDI---TVAGLCWAGRLDEAMEFFEDMFEKG-------------ISPSI-FAFN 360 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~-~~~~ 360 (783)
-.-.+. + +......| ..+|.. ....+...|++.+|+++++...+.+ +.-.. ..--
T Consensus 157 ---a~l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 157 ---AALQVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred ---HhhhHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 001111 1 11111122 223322 2334667888888888888873211 00000 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
.|.-.+...|+.++|..+|...++.+. +|.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~ 258 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNP-ADE 258 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcC-CCc
Confidence 345566778999999999988888763 354
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-09 Score=115.96 Aligned_cols=182 Identities=15% Similarity=-0.019 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 039931 337 LDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR---------AGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRL 407 (783)
Q Consensus 337 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 407 (783)
+++|...|++..+..+. +...|..+..+|.. .+++++|...+++..+.+. -+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCH
Confidence 45666666666654322 33344444333321 1224455555555544331 1334444444444445555
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 039931 408 PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 487 (783)
++|...+++.++.++. +...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++.
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 5555555554444322 3334444444444455555555555444444322 1111112222233344444444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 488 SRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 488 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+...+-+...+..+...+...|+.++|...+.++
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 33211112222333344444444444444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-09 Score=102.05 Aligned_cols=230 Identities=12% Similarity=0.035 Sum_probs=178.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039931 108 DALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRN 187 (783)
Q Consensus 108 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (783)
+.+.++|.+.|++.+|.+-|...++. .|-+.||-.|-++|.+-.+...|+.+|.+-+..-| .|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 67889999999999999999998887 57888999999999999999999999999987532 4444455567788888
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDI 267 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 267 (783)
++.++|.+++....+.. +.++.....+...|.-.++.+-| .+.+.++.+.|+. +...|+.+.-+|.-.+++
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A-------lryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA-------LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH-------HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 99999999999988765 45666666777777777888877 5778888888876 788888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 268 DQANMLYEEMRSRDIAPDA--VTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
+-++.-|++....--.|+. ..|..+.......|++..|.+-|+-....+.. ....+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8888888888765433443 34666666667777887787777777665433 45566666666677777777777777
Q ss_pred HHHHC
Q 039931 346 DMFEK 350 (783)
Q Consensus 346 ~m~~~ 350 (783)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 66654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-09 Score=116.98 Aligned_cols=166 Identities=10% Similarity=0.018 Sum_probs=95.5
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 622 (783)
+++++|...+++.++. .| +...+..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|+.
T Consensus 318 ~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 318 NAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred hHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456666666666664 33 4556666666666667777777777776663 343 4556666666777777777777
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 039931 623 MLDELVSAGIVPNTV--TYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 623 ~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
.+++.++. .|+.. .+..+...+..+++++|...++++++.. .|+. ..+..+...+...|++++|...++++...
T Consensus 394 ~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 77776653 33321 1111111222356677777776665532 2333 33445555566677777777777776655
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 039931 700 SFDFDETSYKIMDRAYHNI 718 (783)
Q Consensus 700 ~~~~d~~~~~~l~~~y~~~ 718 (783)
.|. +....+.++..|+..
T Consensus 471 ~~~-~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 471 EIT-GLIAVNLLYAEYCQN 488 (553)
T ss_pred cch-hHHHHHHHHHHHhcc
Confidence 544 455555666555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-11 Score=85.44 Aligned_cols=49 Identities=43% Similarity=0.907 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039931 599 PDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC 647 (783)
Q Consensus 599 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 647 (783)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+++|+++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=9e-09 Score=101.53 Aligned_cols=198 Identities=14% Similarity=0.065 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 427 VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGF 506 (783)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 506 (783)
..+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555443221 34445555555555555555555555555432 22334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLL-PDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRA 585 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 585 (783)
...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 5556666666666555543211 123344445555666666666666666665532 22344555556666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 586 DELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 586 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666553 12344445555556666666666666655544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-08 Score=101.19 Aligned_cols=197 Identities=16% Similarity=0.074 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 394 CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 394 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 113344444444455555555555555544443322 33444444555555
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGF-VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 552 (783)
.|++++|.+.+++..+... +.....+..+...+...|++++|...+++..+.... +...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544211 112334444555566666666666666666654322 34556666666666777777777
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 553 AFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 553 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77666654 233445555566666666777777666666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-06 Score=90.79 Aligned_cols=526 Identities=13% Similarity=0.096 Sum_probs=259.3
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------C
Q 039931 102 SDFRVLDALLH--GYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL-G--------P 170 (783)
Q Consensus 102 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~--------~ 170 (783)
.|+.+-..+++ .|.-.|..+.|.+-.+-+. +...|..+.+.+++..+.+-|.-.+-.|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555553 4556677777766665544 2356777777777777777666555544321 0 0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC
Q 039931 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN 250 (783)
Q Consensus 171 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~ 250 (783)
.++ .+=.-+.......|.+++|+.++.+-.+ |..|-..|-..|.+++|++ +-+.- ..+ .=
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~e-------iAE~~--DRi-HL 857 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFE-------IAETK--DRI-HL 857 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHH-------HHhhc--cce-eh
Confidence 111 1111222234567888888888887664 3345566677788887742 22211 011 12
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHH----------HhCCC---------CCCHhHHHHHHHHHHccCChhHHHHHHHH
Q 039931 251 VVVYNALLNGYVKARDIDQANMLYEEM----------RSRDI---------APDAVTFNIIVSGHCKYGGMEDGDRLLRD 311 (783)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g~---------~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 311 (783)
..||.....-+-..++.+.|++.|++. +...+ ..|...|.--...+-..|+.+.|+.++..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 346666666666677788888777653 11110 01222233333333445666666666655
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 039931 312 LSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
... |-+++...|-.|+.++|-++-++-- |......|.+.|-..|++.+|...|.+...
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa------- 995 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA------- 995 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------
Confidence 433 4445555666677776666655432 445555666777777777777766665432
Q ss_pred HHHHHHHHHHHhc-------------C--ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH------
Q 039931 392 CTCSSLLVGLCKK-------------G--RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWN------ 450 (783)
Q Consensus 392 ~~~~~li~~~~~~-------------g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------ 450 (783)
+...|+.|-.. | +.-.|-.+|++. | .....-+..|-+.|.+.+|+++-=
T Consensus 996 --fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 996 --FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred --HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 22222222111 1 112222222221 1 011223345666666666655421
Q ss_pred --HHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 039931 451 --ELNRR--KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ-K 525 (783)
Q Consensus 451 --~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~ 525 (783)
+++.. ....|+...+.-.+.++...++++|..++-...+ |..-+..| +..+..-..++-+.|.- +
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCc
Confidence 11111 2223556666666666677777777666654433 22222222 22222222222222221 1
Q ss_pred CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH-----------------
Q 039931 526 GLLPDN----FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVR----------------- 584 (783)
Q Consensus 526 ~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----------------- 584 (783)
.-.|+. .....+...|.+.|.+..|-+-|.+.-.+ ...++++.+.|+.++
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImA 1206 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMA 1206 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeeh
Confidence 122232 23445556666777766666555443211 011222333333222
Q ss_pred -----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 585 -----------ADELVNKMYAGGLDPDITTYNIRMHGYCN---------------IRKMNQAAMMLDELVSAGIVPNTVT 638 (783)
Q Consensus 585 -----------A~~~~~~m~~~g~~p~~~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~~g~~p~~~~ 638 (783)
--++++.+.. +..-...+..|.+-|.. .|-+++|...+.+...++ -...-
T Consensus 1207 ANyLQtlDWq~~pq~mK~I~t--FYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~ 1282 (1416)
T KOG3617|consen 1207 ANYLQTLDWQDNPQTMKDIET--FYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTG 1282 (1416)
T ss_pred hhhhhhcccccChHHHhhhHh--hhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHH
Confidence 1122211111 11111112222222211 233445555555554332 11122
Q ss_pred HHHHHHHHh------------hccHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 639 YNTLMNGVC------------CDILDRAIIIAAKLLKMAFVPNV----VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 639 ~~~li~~~~------------~~~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
++.|-.-+. +++..+.++-...|++.++.||. ..|..+|..+....++..|-+.++++....|.
T Consensus 1283 l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1283 LDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 333332221 12344455555567776666654 45788888999999999999999999988877
Q ss_pred CCHHHH
Q 039931 703 FDETSY 708 (783)
Q Consensus 703 ~d~~~~ 708 (783)
-|..+|
T Consensus 1363 ~~~s~~ 1368 (1416)
T KOG3617|consen 1363 VDLSTF 1368 (1416)
T ss_pred cchhcc
Confidence 555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-09 Score=110.23 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C-CCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHL-----G-PRPSNY-TFNALILGFCRNGCIRIGESLLHVMHKY-----MC- 205 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~- 205 (783)
..++..|...|..+|+++.|..+++..++. | ..|.+. ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666999999999999999999999876 1 124444 3556888999999999999999998752 31
Q ss_pred CCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 039931 206 VAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNV-VVYNALLNGYVKARDIDQANMLYEEMRSR--- 280 (783)
Q Consensus 206 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 280 (783)
.|. ..+++.|..+|++.|++++|...|+.|.++++...... .|.+ ..++.++..++..+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122 35677788889999999999999999999999843321 2233 34666778888899999999998876542
Q ss_pred CCCCC----HhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 281 DIAPD----AVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 281 g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
-+.++ ..+++.+...|.+.|++++|+++|++++
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 11222 2345555566666666666666665554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-05 Score=85.83 Aligned_cols=340 Identities=15% Similarity=0.151 Sum_probs=207.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039931 320 NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG--ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSL 397 (783)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 397 (783)
|+.-.+..+.++...+-..+-+++++++.-.. +.-+...-|.||-...+ -+.....++.+++-..+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------H
Confidence 34444445556666666666666666655321 11111222333322222 23344444444443332 112 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
...+...+-+++|..+|++. ..+....+.|+.- .+.++.|.+.-++.. .+..|+.+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 33344555567777777553 3345555555542 345566655544432 456789999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
.+|.+-|-+. .|+..|..+++...+.|.+++-.+.+...+++.-.|.+. +.||-+|++.+++.+-.+++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 9998776443 467788899999999999999999888877776666554 46888999999888766554
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 558 YRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
.-||..-...+.+-|...|.++.|.-++.... .|..|...+...|.++.|.+.-++. -+..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 24888888888888888888888887776544 3777888888888888887766653 2456
Q ss_pred HHHHHHHHHhhc-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 638 TYNTLMNGVCCD-ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 638 ~~~~li~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
||..+-.+|..+ .+. +..|-..++..-..-..-++..|...|-++|-+.+++..+.+.-- .-..|.-|+-.|+
T Consensus 1251 tWK~VcfaCvd~~EFr-----lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-HMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFR-----LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-HMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhh-----HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHH
Confidence 776665554321 111 122323333333444556677777777777777777666554432 3334555554454
Q ss_pred h
Q 039931 717 N 717 (783)
Q Consensus 717 ~ 717 (783)
+
T Consensus 1325 k 1325 (1666)
T KOG0985|consen 1325 K 1325 (1666)
T ss_pred h
Confidence 3
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-09 Score=110.26 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhc-----CCC
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREV-----GI-MPSESA-ITILFKSLLRVGDYGSVWKLFRDMIHL-----GPR 171 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~-----~~~ 171 (783)
..++..|...|...|+++.|..++...++. |. -|.+.+ .+.+...|...+++.+|..+|++++.. |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 357777999999999999999999988775 21 233333 455888899999999999999999863 321
Q ss_pred -C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCCH-HhHHHHHHHHHhcCCcchHhhhccchHHHHHHH
Q 039931 172 -P-SNYTFNALILGFCRNGCIRIGESLLHVMHKY-----MC-VADF-FAYNILINAYCIRGQTSYALGKCGAGRMIFDMI 242 (783)
Q Consensus 172 -~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m 242 (783)
| -..+++.|...|++.|++++|...+++..+. |. .|.+ ..++.+...++..+++++|...++.+.+++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 2347888999999999999999988876532 21 2333 246777788899999999988888777777744
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----C--CC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 039931 243 QEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRD----I--AP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 243 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 315 (783)
+.....--.-+++.|...|.+.|++++|.++|+..+... - .+ ....++.+...|.+.+...+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 432211123679999999999999999999999987631 1 11 1334566666677777777777766654321
Q ss_pred ----CCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 316 ----GLL--PNCTLYDITVAGLCWAGRLDEAMEFFEDMF 348 (783)
Q Consensus 316 ----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (783)
|.. ....+|..|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 112234444444444444444444444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-06 Score=93.70 Aligned_cols=291 Identities=16% Similarity=0.101 Sum_probs=187.8
Q ss_pred HHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHH-HHHHH
Q 039931 217 NAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFN-IIVSG 295 (783)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~ 295 (783)
..+...|++++|+ +.++.-.. .+.............+.+.|+.++|..+|..+++++ |+...|. .+..+
T Consensus 12 ~il~e~g~~~~AL-------~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEAL-------EHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHH-------HHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 4456778988884 45554332 222234556667788999999999999999999985 4555544 44444
Q ss_pred HHc-----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 296 HCK-----YGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRL-DEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 296 ~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
..- ..+.+...++++++...-+. ......+.-.+.....+ ..+..++..+..+|+++ +|+.+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 422 23567777888877665322 22221111111111122 34556677777777653 456666666655
Q ss_pred CCHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 039931 370 GLEENAFEAYKIMHQF----G----------LTPSS--CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLL 433 (783)
Q Consensus 370 g~~~~A~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 433 (783)
.+.+-..+++...... + -.|+. .++..+...|...|++++|++.+++.++..+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 5555555555554322 1 12333 24455666778889999999999988887433 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH--------HHHHHHH
Q 039931 434 DGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA--------YNSLIAG 505 (783)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~li~~ 505 (783)
..+-+.|++.+|.+.++........ |...=+..+..+.++|++++|.+++....+.+..|-... ......+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 8888999999999999888887655 667777777888889999999988888877654332211 1334566
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039931 506 FCNRGKLNEALKLEREMRQ 524 (783)
Q Consensus 506 ~~~~g~~~~A~~l~~~m~~ 524 (783)
|.+.|++..|++.|..+.+
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7788888888777766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-09 Score=99.10 Aligned_cols=239 Identities=11% Similarity=-0.052 Sum_probs=165.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC 542 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 542 (783)
--+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-..|.+..++..|+.++.+-.+.- +-|+.....+...+-
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3356777788888888888888777765 4666677777788888888888888888777662 224444455666777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 622 (783)
..++.++|.++++...+.. +.++....++..+|.-.++++-|+.++.+++..|+ -+...|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 7788888888888877652 34666777777777778888888888888888774 466777777777888888888888
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 623 MLDELVSAGIVPNT---VTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 623 ~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
.|++.+..--.|+. +.||.-.-+...|++.-|.+.|+-.+.. .|+. ..++.|.-.-.+.|++++|..++..+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88877764444554 2343322122236777777777776663 3444 5677666555778888888888888888
Q ss_pred cCCCCCHHHH
Q 039931 699 ISFDFDETSY 708 (783)
Q Consensus 699 ~~~~~d~~~~ 708 (783)
..|..-++++
T Consensus 458 ~~P~m~E~~~ 467 (478)
T KOG1129|consen 458 VMPDMAEVTT 467 (478)
T ss_pred hCcccccccc
Confidence 7765333344
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-06 Score=80.51 Aligned_cols=400 Identities=15% Similarity=0.068 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
+.+...-...+.+|...|+-++|..........- ...--|.++..+-+.| +..++.--+.+.+..-| ....
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL~- 165 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MALQ- 165 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHHH-
Confidence 4566677788889999999999998877654321 1222444554444443 33344444444444322 1111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR--GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNAL 257 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 257 (783)
.|.+..+.+ +..+...-..|.....+|+..+...-+.+++.+ ++...|.. ..++-+.. .-+.-|+.....+
T Consensus 166 ~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~-----t~l~le~~-~~lr~NvhLl~~l 238 (564)
T KOG1174|consen 166 VIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQ-----TFLMLHDN-TTLRCNEHLMMAL 238 (564)
T ss_pred HHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhh-----HHHHHHhh-ccCCccHHHHHHH
Confidence 111111111 000111111233333344444444444444433 44333321 22222222 2345578888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhH-HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 039931 258 LNGYVKARDIDQANMLYEEMRSRDIAPDAVT-FNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGR 336 (783)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (783)
.+.+...|+.++|...|+..... .|+..+ .....-.+.+.|+.+.-..+...+....-. ...-|-.-...+...++
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKK 315 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhh
Confidence 99999999999999999988765 344333 122222344567777766666665543211 22222223334456677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 337 LDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 337 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
++.|+.+-++.++.... +...|-.-...+...|+.++|.-.|+..+... +-+...|..|+.+|...|++.+|.-+-+.
T Consensus 316 ~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 88888888777765333 45555555567777888888888888877653 23567788888888888888888777666
Q ss_pred HHHcCCCCCHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 417 MIEKGFPINKVAFTVLL-DGYF-RIGDLIGAQSLWNELNRRKIFPD-AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
..+. ++.+..+.+.+. ..+. ....-++|.++++...+. .|+ ....+.+...+...|..++++.+++..... .
T Consensus 394 ~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~ 468 (564)
T KOG1174|consen 394 TIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--F 468 (564)
T ss_pred HHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--c
Confidence 6554 333455554442 2222 222335666666665554 233 234455556666677777777777776653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQK 525 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (783)
||....+.|.+.+...+.+.+|...|......
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66666777777777777777777777666655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-07 Score=98.11 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=92.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN-NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGF 541 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 541 (783)
++..+...|...|++++|++..++.++. .|+ +..|..-...+-+.|++.+|.+.++........ |...-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 3355567777888888888888888875 355 556777778888888888888888888877655 777777777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 542 CKQGRMKPAIDAFMDMYRTGLVPDIV------TY--NTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.++|++++|.+++....+.+..|-.. .| .-...+|.+.|++..|++-|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888877765444221 12 3334677788888888776665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-07 Score=96.44 Aligned_cols=228 Identities=9% Similarity=-0.076 Sum_probs=154.8
Q ss_pred ccCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 039931 473 KAGLVDEAYGVFLEMSRIG-FVPN--NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP 549 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 549 (783)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+..+. ++..|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777777532 1222 345777777888889999999999988887544 67888888899999999999
Q ss_pred HHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 550 AIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 550 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
|...|++.++. .| +..+|..+...+...|++++|.+.+++..+. .|+..........+...++.++|...|++..
T Consensus 117 A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999998874 45 4677888888888899999999999998873 5644322222233445678999999997765
Q ss_pred HCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHH---cC--CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 629 SAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLK---MA--FVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 629 ~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~---~~--~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.. ..|+...+ . +..+..++..++ +.+..+.+ .. +.| ...+|..+...+.+.|++++|+.+++++++.+|.
T Consensus 193 ~~-~~~~~~~~-~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EK-LDKEQWGW-N-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hh-CCccccHH-H-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 42 23332222 1 222222433333 23333332 11 122 2357888999999999999999999999999974
Q ss_pred CCHHHHHH
Q 039931 703 FDETSYKI 710 (783)
Q Consensus 703 ~d~~~~~~ 710 (783)
|.+-+..
T Consensus 269 -~~~e~~~ 275 (296)
T PRK11189 269 -NFVEHRY 275 (296)
T ss_pred -hHHHHHH
Confidence 6655533
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-06 Score=89.83 Aligned_cols=367 Identities=16% Similarity=0.095 Sum_probs=223.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
..-|.+|....++++|+.+-+. .|.+.-...-.+.++++...|+-++|-++-.. +- ---+.|..|.+.
T Consensus 561 e~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dg-d~laaiqlyika 628 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DG-DGLAAIQLYIKA 628 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cC-ccHHHHHHHHHc
Confidence 3456777777888888877543 23332233345556667777777776554211 11 112356778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
|....|...-..-.. ...|......+..++.+..-+++|-++|+++... ...+..|-+..-+.+|+++-
T Consensus 629 ~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaiela 697 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELA 697 (1636)
T ss_pred CCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHH
Confidence 888777665422111 1236666666777777777778888888776531 12334444444455555544
Q ss_pred HHHHHcCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 415 CKMIEKGFPINKVAF-TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
+-. ++..++.. ..-...+...|+++.|...|-+... ....+.+-.....+.+|+.+++.+....
T Consensus 698 rfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk-- 762 (1636)
T KOG3616|consen 698 RFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK-- 762 (1636)
T ss_pred Hhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--
Confidence 322 22122211 2234455667777777766644322 1233455667788889999998887753
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
.-.--|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.|.++-.+... .......|.+-.
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiaka 831 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKA 831 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhH
Confidence 223346777888889999999988886532 345568889999999999888777653 233556676666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh-hcc
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV--TYNTLMNGVC-CDI 650 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~-~~~ 650 (783)
.-+-++|++.+|.+++-..- .|+.. |..|-+.|..++.+++.++- .|+.. |..-+...+- .|+
T Consensus 832 edldehgkf~eaeqlyiti~----~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIG----EPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred HhHHhhcchhhhhheeEEcc----CchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccC
Confidence 67778888888888876654 35543 56788888888888887763 33432 2222222222 267
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 039931 651 LDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWG 693 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 693 (783)
+..|..-|-+..+ |.+-+..|...+.|++|.++.
T Consensus 898 lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 898 LKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 7777665544332 555566667777777776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-07 Score=90.31 Aligned_cols=395 Identities=16% Similarity=0.092 Sum_probs=245.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCh
Q 039931 329 AGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS-CTCSSLLVGLCKKGRL 407 (783)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~ 407 (783)
+..+..|+++.|+.+|.+.+...+. |.+.|+.-..+|...|++++|++=-.+-++. .|+. ..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4567889999999999999987665 8899999999999999999999877776664 5553 5688899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH---HHHHHHHHhC---CCCCCHHHHHHHHHHHHcc-------
Q 039931 408 PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGA---QSLWNELNRR---KIFPDAVAFSAYINGLSKA------- 474 (783)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~---~~~p~~~~~~~li~~~~~~------- 474 (783)
++|+.-|.+-++.... |...++.+.+++.......+. -.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999998888544 788888888887211000000 0011111110 0000111222232222111
Q ss_pred ---CChHHHHHHHHHH-----HhCC-------CCCC----------------------HHHHHHHHHHHHhcCCHHHHHH
Q 039931 475 ---GLVDEAYGVFLEM-----SRIG-------FVPN----------------------NFAYNSLIAGFCNRGKLNEALK 517 (783)
Q Consensus 475 ---g~~~~A~~~~~~m-----~~~~-------~~p~----------------------~~~~~~li~~~~~~g~~~~A~~ 517 (783)
.++..|.-.+... ...| ..|. ..-+..+.++.-+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111222111110 0000 1110 1113445566666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-------HHHHHHHHHcCCHHHHHHHHH
Q 039931 518 LEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTY-------NTLIGGYCKALDIVRADELVN 590 (783)
Q Consensus 518 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~A~~~~~ 590 (783)
-+....... -+..-++....+|...|.+.++...-...++.|.. ...-| ..+..+|.+.++++.++..++
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777654 25555666667777777777777766666655421 11122 223345666777777888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhccHHHHHHHHHHHHHcCCCC
Q 039931 591 KMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT--VTYNTLMNGVCCDILDRAIIIAAKLLKMAFVP 668 (783)
Q Consensus 591 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p 668 (783)
+.+...-.|+.. .+....+++....+...- +.|+. ..-..-...+..+++..|++.+.++++.. |
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P 389 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--P 389 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--C
Confidence 766533333222 223334444444444332 33433 22233333344589999999999999854 6
Q ss_pred -CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHHHHh
Q 039931 669 -NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCMTLN 745 (783)
Q Consensus 669 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (783)
|...|..-.-+|.+.|.+.+|+.-.++.++++|+ ....|..-+-++. .-++++.+.+.+.++++++|++.-..-+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~-~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALR-AMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 4577888888899999999999999999999876 5667766655543 2578888889999999999877555433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-05 Score=76.95 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY 576 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 576 (783)
+|...++...+..-+..|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+--++. +..+..--...++-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 34444554445555555555555555554444 4445555555444 34445555555544433 111222233444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 577 CKALDIVRADELVNKMYAGGLDPD--ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 577 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
...++-..+..+|++.+..++.|+ ...|..++.-=+.-|++..+.++-+++.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455555555555555555444443 2445555555555555555555554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=0.00011 Score=79.02 Aligned_cols=305 Identities=14% Similarity=0.090 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREV-GI--------MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~--------~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 174 (783)
..+|+.+.+.|.+..+.+-|.-.+..|... |. .|+ ..-..+.-.-...|-.++|..+|.+-.+
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 469999999999999999888887766432 10 111 1111122223456888999999988765
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccc----hHHHHHHHHHCC----
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGA----GRMIFDMIQEEG---- 246 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----a~~~~~~m~~~g---- 246 (783)
|..|=+.|-..|.+++|.++-+.--+..+ ..||.....-+-..++.+.|++.++. +.+++..+.+.-
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 33455667889999999988775433222 23565566666677888888887764 345555444320
Q ss_pred ----CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHH
Q 039931 247 ----LSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCT 322 (783)
Q Consensus 247 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 322 (783)
-..|...|.--...+-..|+.+.|+.+|.... -|-++++..|-.|+.++|-++-++- -|..
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es------gd~A 968 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES------GDKA 968 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc------ccHH
Confidence 01244445555555566799999999998765 3677888899999999999987763 3555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhCCC
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG---------------LEENAFEAYKIMHQFGL 387 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~~~ 387 (783)
....|.+.|-..|++.+|..+|.+... +...|+.|-.++ +.-.|-.+|++. |.
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~ 1036 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG 1036 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch
Confidence 666788999999999999999987654 333343332222 122223333322 11
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHHc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 388 TPSSCTCSSLLVGLCKKGRLPEAWDLLC--------KMIEK--GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
. ....+..|-+.|.+.+|+++-- +++.. ....|+...+.-.+.++...++++|..++-...
T Consensus 1037 ~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1037 Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 1223445677777777766421 12222 233466677777777777778888777765443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-05 Score=80.40 Aligned_cols=310 Identities=16% Similarity=0.119 Sum_probs=150.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
+-|..|.+.|.+..|.+....=.. ...|......+..++.+..-+++|-.+|+++.. +...+..|-+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 446777777777776665422111 123555555555555555555555555555432 111122222222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 336 RLDEAMEFFEDMFEKGISPSIFAF-NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 336 ~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
-+.+|.++-+-.. +..+++. ......+.+.|+++.|+..|-+... ....+.+.....++.+|+.++
T Consensus 689 af~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 2333433322111 1111111 1222334445555555555443321 122344555566667777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 039931 415 CKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 494 (783)
+.+..+.. -...|..+.+.|...|+++.|.++|.+.. .++-.|..|.+.|+++.|.++-.+... ...
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEA 822 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chh
Confidence 66665532 23345566666777777777776665432 234456667777777777666555432 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIG 574 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 574 (783)
....|.+-..-+-+.|++.+|.+++-.+. .|+. .|.+|-+.|..+..+++..+-.- ..-..|...+..
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAK 890 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHH
Confidence 34445544555556666666666553322 2232 24556666666665555544221 011234444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMM 623 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 623 (783)
-|...|++..|.+-|-+.-+ |.+-++.|-..+.|++|.++
T Consensus 891 e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 55556666666555544332 33444445555555555444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-06 Score=78.26 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=129.8
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRM 547 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 547 (783)
+..+...|+...|+.....+++.. +-|...|..-..+|...|++..|+.=++...+.... +..++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 334556788888888888887753 456666777777888888888888777766665333 555555666677788888
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 548 KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 548 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
+.++...++.++ +.||....-.. | .++.+..+.++.|.+ ....+.|.++++-.+..
T Consensus 240 ~~sL~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 240 ENSLKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKV 295 (504)
T ss_pred HHHHHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHH
Confidence 888888888887 46765433221 1 112222333333322 23456667777777776
Q ss_pred HHCCCCCCHHHHHHH--HHHHhh--ccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 628 VSAGIVPNTVTYNTL--MNGVCC--DILDRAIIIAAKLLKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 628 ~~~g~~p~~~~~~~l--i~~~~~--~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
++....-..++|+.. +..|.+ +.+.+|++...+++. +.|| +.++-.-..+|.-..++++|+.-++++.+.++.
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 654322222333332 111112 577788888888777 5565 466666666777777888888888888887765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-06 Score=84.85 Aligned_cols=235 Identities=14% Similarity=0.021 Sum_probs=127.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------H
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS-------L 397 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------l 397 (783)
..+.+..-+..+++.|.+-+....+.. -++.-++....+|...|.+.+.........+.|-. ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445555666667777777777666653 24445555666677777666666666555554422 2222222 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
..+|.+.++++.++..|.+.......|+. ..+....+++.+..+...-.++.. ..-...-.+.+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 23445556677777777766554333222 223333444444444333322211 11112224556667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
..|+..+.++++.. +-|...|..-.-+|.+.|.+..|+.=-+.-++..+ +....|..=..++....++++|.+.|.+.
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777654 44566677777777777777777666655555522 13444544455555566777777777777
Q ss_pred HHcCCCCChhHHHHHHHHH
Q 039931 558 YRTGLVPDIVTYNTLIGGY 576 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~ 576 (783)
++. .|+..-+..-+.-|
T Consensus 453 le~--dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 453 LEL--DPSNAEAIDGYRRC 469 (539)
T ss_pred Hhc--CchhHHHHHHHHHH
Confidence 664 35444433333333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.7e-07 Score=89.76 Aligned_cols=153 Identities=12% Similarity=-0.034 Sum_probs=87.5
Q ss_pred HhcCChHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 039931 115 LRVEMSAEVMEILYRMREVGI-MP--SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIR 191 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~-~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 191 (783)
...+..+.++.-+.+++.... .| ....|..+...+.+.|++++|...|++.++..| .+...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHH
Confidence 334566777777777775421 11 134466666677777777777777777777655 45667777777777777777
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 039931 192 IGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQAN 271 (783)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 271 (783)
+|...|++..+.. +.+..++..+...+...|++++| .+.|+...+.. |+..........+...+++++|.
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA-------~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELA-------QDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHH
Confidence 7777777776543 23345555566666666666666 34555544432 22211111111222345566666
Q ss_pred HHHHHHH
Q 039931 272 MLYEEMR 278 (783)
Q Consensus 272 ~~~~~m~ 278 (783)
+.|++..
T Consensus 186 ~~l~~~~ 192 (296)
T PRK11189 186 ENLKQRY 192 (296)
T ss_pred HHHHHHH
Confidence 6665443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-06 Score=80.36 Aligned_cols=194 Identities=15% Similarity=0.020 Sum_probs=91.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGL 476 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 476 (783)
|.-+|...|+...|..-+++.++..+. +..++..+...|-+.|+.+.|.+.|++..+..+. +....|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 344455555555555555555554322 3444555555555555555555555555444332 33444444555555555
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 039931 477 VDEAYGVFLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFM 555 (783)
Q Consensus 477 ~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 555 (783)
+++|...|++....-.- --..||..+.-+..+.|+.+.|...|++..+.... .+.+.-.+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 55555555554442100 11223444444444555555555555555544322 23334444444555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 556 DMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 556 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.....+. ++..+....|..--..|+.+.+.++=.++.+
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5444432 4444444444444445555555444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=0.00021 Score=78.04 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=110.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKS--LLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGE 194 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 194 (783)
.+++..|+...+++.+.. |+. .|..++.+ +.|.|+.++|..+++.....++ .|..|...+-.+|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 345556666666655542 222 22223333 3455666666655555544433 25556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------
Q 039931 195 SLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD-------- 266 (783)
Q Consensus 195 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------- 266 (783)
.++++..+. -|+..-...+-.+|.+.+.+.+-. +.|.+++...++ +...+=++|+.+.+.-.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ---kaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ---KAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccc
Confidence 666666544 244555555555555555554332 122333332222 34444444444443211
Q ss_pred --hhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCChhHHHHHHH-HHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039931 267 --IDQANMLYEEMRSRD-IAPDAVTFNIIVSGHCKYGGMEDGDRLLR-DLSVSGLLPNCTLYDITVAGLCWAGRLDEAME 342 (783)
Q Consensus 267 --~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (783)
..-|.+.++.+.+.+ ---+..-...-...+...|..++|.+++. ...+.-...+...-+.-+..+...+++.+-.+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 123445555555543 11111222222333445666777777763 33333333344444555666667777777777
Q ss_pred HHHHHHHCCCC
Q 039931 343 FFEDMFEKGIS 353 (783)
Q Consensus 343 ~~~~m~~~g~~ 353 (783)
+-.++...|..
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 77777766443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-06 Score=78.84 Aligned_cols=197 Identities=15% Similarity=0.042 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 404 (783)
..|.-+|...|+...|..-+++.++..+. +..+|..+...|.+.|..+.|.+.|++....... +-.+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 34455677777777777777777766444 5666777777777777777777777777665422 445566666666777
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 405 GRLPEAWDLLCKMIEKG-FPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 405 g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
|++++|...|++....- ...-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 77777777777666542 1222345555665666666666666666666665433 334455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK 525 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (783)
++.....+. ++..+.-..|..-...|+.+.+.+.=.++...
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 666655543 55555555555555666666555554444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-05 Score=76.12 Aligned_cols=319 Identities=15% Similarity=0.068 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 039931 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS-AYING 470 (783)
Q Consensus 392 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~ 470 (783)
.-..-+...+...|++.+|+..|...++.++. +-.++-.-...|...|+...|+.-+...++. +||-..-. .-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 33444555666666666666666666554211 2222222344566666666666666666554 34432211 11234
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 039931 471 LSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPA 550 (783)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 550 (783)
+.+.|.+++|..=|+..++.. |+.-+ ...++.+....++-..+ ...+..+.-.|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhH
Confidence 456666666666666666542 32211 11111111111111111 1223334557888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
+.+...+++.. +-|...|..-..+|...|++..|+.=+....+.. ..+..+..-+-..+...|+.+.++...++.++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 88888888742 3478888888888888888888887777766532 33456666666777888888888888888776
Q ss_pred CCCCCHHH----HHHHHH---HHh-------hccHHHHHHHHHHHHHcCCCCCH--H---HHHHHHHHHHhcCChhhHHH
Q 039931 631 GIVPNTVT----YNTLMN---GVC-------CDILDRAIIIAAKLLKMAFVPNV--V---TTNVLLSHFCKQGMPEKTLL 691 (783)
Q Consensus 631 g~~p~~~~----~~~li~---~~~-------~~~~~~A~~~~~~~~~~~~~p~~--~---~~~~ll~~~~~~g~~~~A~~ 691 (783)
+.||... |-.+-. .+- .+.+.++++..++.++ ..|.. + .+..+-..+.+.|++-+|++
T Consensus 252 -ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 252 -LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred -cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 4666532 221111 110 1344555555666655 33542 2 23445556778899999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHH
Q 039931 692 WGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCM 742 (783)
Q Consensus 692 ~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (783)
...++++++|+ |+.++.--+.+|.- .+.++.+-.-++++.+.++++-.+
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~-dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLG-DEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhcCcccHHH
Confidence 99999999987 78888888888743 577777777778888887766543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-05 Score=84.24 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-CcH--HHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-PNC--TLYDITVA 329 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~ 329 (783)
....+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++....... ++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3344556667777778888887777776422 4455666666777777777777777776654321 221 23445666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 039931 330 GLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~ 349 (783)
.+...|++++|..++++...
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc
Confidence 67777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-05 Score=83.95 Aligned_cols=202 Identities=11% Similarity=-0.043 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGI-MPSES-AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
..+..+..+...+...|+++.+.+.+.+..+... .++.. ........+...|++++|.+.+++.++..| .+...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH
Confidence 3445667777777777888887777766555432 11221 122233445677888999998888888755 34444432
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHH
Q 039931 180 LILGFCR----NGCIRIGESLLHVMHKYMCVAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVY 254 (783)
Q Consensus 180 l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~ 254 (783)
...+.. .+..+.+.+.++.. ....|+ ......+...+...|++++| ...+++..+... .+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A-------~~~~~~al~~~p-~~~~~~ 151 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRA-------EEAARRALELNP-DDAWAV 151 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHhhCC-CCcHHH
Confidence 222222 34444555544441 111233 34445566677788888888 456666665442 256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--hHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDI-APDA--VTFNIIVSGHCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 315 (783)
..+...+...|++++|...+++...... .|+. ..|..+...+...|+.++|..++++....
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888889999999999888876532 1222 23556777888889999999999887544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-06 Score=78.48 Aligned_cols=315 Identities=13% Similarity=0.098 Sum_probs=191.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
+++.+..+.+..++++|++++..-.++. +.+......|...|-+..++..|-..|++....-|+...+-+- -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHHH
Confidence 5566666677788899999988888775 3366677788888888889999999999887765433333222 2345667
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFFAYNILINAY--CIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
.+.+..|+++...|... ++...-..-+.+- -..+++..+ +.+.++.+..| +..+.+...-...+.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~-------rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGS-------RSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcch-------HHHHHhccCCC---ccchhccchheeecc
Confidence 78888898888887642 2222222222222 233555544 66777776432 445555555666788
Q ss_pred CChhHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHH----HHHHHHHHhcCCHHH
Q 039931 265 RDIDQANMLYEEMRSR-DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLY----DITVAGLCWAGRLDE 339 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~ 339 (783)
|++++|++-|+...+- |.. ....|+..+. ..+.|+.+.|.+...+++++|+...+..- +-.++ ...+..
T Consensus 158 gqyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgN 231 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGN 231 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccc
Confidence 9999999999888775 444 4566766654 45678888888888888877754221110 00000 000000
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 340 AMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF-GLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 340 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
...+.... =+..+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-. -..+++.+..+-+.-+.
T Consensus 232 t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 232 TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL 303 (459)
T ss_pred hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH
Confidence 01111100 1223555556667788888888887777533 234466665544322 22445556666666666
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
+..+ -...|+..++-.||+..-++-|-+++-+
T Consensus 304 ~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6644 3456777778888888777777777654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-06 Score=81.39 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH-HHHHHHH
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFT-VLLDGYF 437 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~ 437 (783)
+.+.+..+.+..+++.|++++..-.+... .+....+.+..+|....++..|-..++++...-+ ...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHHH
Confidence 44455555566666666666665555431 1455555566666666666666666666554421 222221 1234445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039931 438 RIGDLIGAQSLWNELNRRKIFPDAVAFSAYI--NGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEA 515 (783)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 515 (783)
+.+.+..|+++...|... |+...-..-+ ......+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 556666666666655542 1111111111 11234455555555555544321 222222222233456666666
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 516 LKLEREMRQK-GLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 516 ~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
.+-|+...+- |.. ....||.-+ +..+.|+++.|++...++++.|++
T Consensus 164 vqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 6666665543 333 333444333 333456666666666666666553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.0001 Score=88.68 Aligned_cols=335 Identities=13% Similarity=-0.023 Sum_probs=193.3
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 039931 296 HCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGI------SPS--IFAFNSIIAAYS 367 (783)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~--~~~~~~li~~~~ 367 (783)
....|+.+.+...++.+.......+..........+...|++++|...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344567776666666542211111222223334445677888888888877654210 111 112222334556
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHh
Q 039931 368 RAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLCKKGRLPEAWDLLCKMIEK----GFP-INKVAFTVLLDGYFR 438 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~ 438 (783)
..|++++|...++.....-...+. ...+.+...+...|++++|...+++.... |.. ....+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888887653111121 23345555667788888888888877643 111 112344556667788
Q ss_pred cCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 039931 439 IGDLIGAQSLWNELNRR----KIF--P-DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG--FVP--NNFAYNSLIAGFC 507 (783)
Q Consensus 439 ~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~li~~~~ 507 (783)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888888776442 211 1 12334445556677788888888887765421 112 1233444556677
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQKG--LLPDNF--TF--NIIINGFCKQGRMKPAIDAFMDMYRTGLVPD---IVTYNTLIGGYCK 578 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 578 (783)
..|+++.|...+.+..... ...... .. ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8888888888887764421 111110 00 1112344557888888888766543211111 1113456667778
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 579 ALDIVRADELVNKMYAG----GLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+.++.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888877652 32222 245666677888888888888888888763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.2e-07 Score=90.24 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKM-NQAAMMLD 625 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 625 (783)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.. +-|..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 23344444444444444444444444444443321 11233333344444444444 33334444
Q ss_pred HHH
Q 039931 626 ELV 628 (783)
Q Consensus 626 ~m~ 628 (783)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=63.29 Aligned_cols=34 Identities=47% Similarity=0.896 Sum_probs=28.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 245 EGLSPNVVVYNALLNGYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 245 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 278 (783)
+|+.||++|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888873
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00014 Score=87.56 Aligned_cols=335 Identities=10% Similarity=-0.013 Sum_probs=193.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC------CCc--HHHHHHHHHHHH
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL------LPN--CTLYDITVAGLC 332 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~ 332 (783)
....|+++.+...++.+.......+..........+...|+++++...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445566666666665542211111222223333444566777777777776643210 111 112222333455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHh
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPS----IFAFNSIIAAYSRAGLEENAFEAYKIMHQF----GL-TPSSCTCSSLLVGLCK 403 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~ 403 (783)
..|++++|...+++....-...+ ....+.+...+...|++++|...+++.... |. .+...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888888887765311112 134455666677788888888887776532 11 1112344555666778
Q ss_pred cCChhHHHHHHHHHHHc----CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEK----GFP---INKVAFTVLLDGYFRIGDLIGAQSLWNELNRR----KIFPDAVAFSAYINGLS 472 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~ 472 (783)
.|++++|...+++.... +.. .....+..+...+...|++++|...+.+.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888877766542 211 12334555666677778888888888776442 11112334445566777
Q ss_pred ccCChHHHHHHHHHHHhC----CCCCCHHH-H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 039931 473 KAGLVDEAYGVFLEMSRI----GFVPNNFA-Y-NSLIAGFCNRGKLNEALKLEREMRQKGLLPD---NFTFNIIINGFCK 543 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~----~~~p~~~~-~-~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~ 543 (783)
..|+.++|.+.+.+.... +....... . ...+..+...|+.+.|..++........... ...+..+...+..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 888888888888776432 11111101 1 1122344557888888888776554221111 1113456677888
Q ss_pred cCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 039931 544 QGRMKPAIDAFMDMYRT----GLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYAG 595 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 595 (783)
.|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999998888887643 32222 345667777888899999999999888874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00098 Score=68.85 Aligned_cols=452 Identities=11% Similarity=0.076 Sum_probs=245.6
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039931 206 VADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPD 285 (783)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 285 (783)
+-|+.+|+.||.-+... ..+++ ++.++++...- +-....|..-|..-.+.++++....+|.+-+..- .+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~-------R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKV-------RETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHH-------HHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 56788888888876655 66666 67788776532 2245678888999999999999999998877652 35
Q ss_pred HhHHHHHHHHHHc-cCChhH----HHHHHHHHH-hCCCCC-cHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHH
Q 039931 286 AVTFNIIVSGHCK-YGGMED----GDRLLRDLS-VSGLLP-NCTLYDITVAG---------LCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 286 ~~t~~~ll~~~~~-~g~~~~----A~~~~~~~~-~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 349 (783)
...|...|+.-.+ .|+... ..+.|+-.. +.|+.+ +-..|+..+.. |....+++...+++++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6667666664333 233333 223333333 334332 22334444432 3344456667777777775
Q ss_pred CCCCC------CHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhH--HHH
Q 039931 350 KGISP------SIFAFNSIIAAYS-------RAGLEENAFEAYKIMHQ--FGLTPSSCTCSSLLVGLCKKGRLPE--AWD 412 (783)
Q Consensus 350 ~g~~p------~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~--a~~ 412 (783)
.-+.- |-..|..=|+... +...+..|.++++++.. .|+..+..+ .-..|-.++ ..+
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~ 238 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVE 238 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHH
Confidence 32210 1112221121111 12234555555555532 122111111 000111111 112
Q ss_pred HHHHHHH----cCCC-CCH--------hhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 039931 413 LLCKMIE----KGFP-INK--------VAFTVLLDGYFR-IGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVD 478 (783)
Q Consensus 413 ~~~~~~~----~~~~-~~~--------~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 478 (783)
++...++ .+.. .+. .+|...+..+.- -.-|-++...+....+ .+....+.=......+
T Consensus 239 ~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~--------l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 239 LWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD--------LLTEKGDVPDAKSLTD 310 (656)
T ss_pred HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH--------HHHHhcccccchhhHH
Confidence 2222221 1111 000 011111111000 0001111111111100 0000000000111245
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 039931 479 EAYGVFLEMSRIGFVPNNFAYNSLIAGFCNR---GKLNEALKLEREMRQK-GLLPDNFTFNIIINGFCKQGRMKPAIDAF 554 (783)
Q Consensus 479 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 554 (783)
++..+++.....-..-+..+|..+.+---.. +..+.....++++... ...| ..+|..+++.-.+..-++.|..+|
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHH
Confidence 6777777766543334555665554432211 1355666666666654 2343 346778888888889999999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039931 555 MDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632 (783)
Q Consensus 555 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 632 (783)
.++.+.+..+ ++..+++++.-|| .++.+-|.++|+--++. .+|. .--...++-+.+.++-..|..+|++.+..++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988777 7888899998887 46889999999987763 3544 4446778889999999999999999998877
Q ss_pred CCCH--HHHHHHHHHHhh-ccHHHHHHHHHHHHHc-C--CCCCHHHHHHHHHHHHhcCChh
Q 039931 633 VPNT--VTYNTLMNGVCC-DILDRAIIIAAKLLKM-A--FVPNVVTTNVLLSHFCKQGMPE 687 (783)
Q Consensus 633 ~p~~--~~~~~li~~~~~-~~~~~A~~~~~~~~~~-~--~~p~~~~~~~ll~~~~~~g~~~ 687 (783)
.||. ..|..+|+--.. |++.-..++-+++... + ..|.-.+-..+++-|.-.+++.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 7775 678888875444 8888888888775431 1 2222222334455555455443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-06 Score=83.64 Aligned_cols=149 Identities=16% Similarity=0.095 Sum_probs=67.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 039931 435 GYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFC----NRG 510 (783)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g 510 (783)
.+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.. .|. +...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCch
Confidence 344445555555544321 133444444555555555555555555555431 222 2222222222 122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH-HHHHHHH
Q 039931 511 KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDI-VRADELV 589 (783)
Q Consensus 511 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 589 (783)
.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.+ +-+..+...++......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455555555555443 33455555555555555555555555555554432 12344444444444445554 4444555
Q ss_pred HHHHH
Q 039931 590 NKMYA 594 (783)
Q Consensus 590 ~~m~~ 594 (783)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-06 Score=84.22 Aligned_cols=255 Identities=15% Similarity=0.078 Sum_probs=132.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 039931 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEA 480 (783)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 480 (783)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+..+. +......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 34555566666666655555433 4555555555555555555555555555554433 444555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-H
Q 039931 481 YGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMY-R 559 (783)
Q Consensus 481 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 559 (783)
++.++..+... |. |..+..+ ...++...- +-.++... +....++|-++. .
T Consensus 373 l~~L~~Wi~~~--p~---y~~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PK---YVHLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhC--cc---chhcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHHHh
Confidence 55555555432 11 1111000 000000000 00111111 122233333332 3
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 039931 560 TGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-- 636 (783)
Q Consensus 560 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 636 (783)
.+..+|......|.-.|--.|++++|.+.|+.++. +.| |..+||-|...++...+..+|+..|.+.++ ++|.-
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 33335666666666667777777777777777776 455 456677777777777777777777777765 45654
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH---cCC------CCCHHHHHHHHHHHHhcCChhhHH
Q 039931 637 VTYNTLMNGVCCDILDRAIIIAAKLLK---MAF------VPNVVTTNVLLSHFCKQGMPEKTL 690 (783)
Q Consensus 637 ~~~~~li~~~~~~~~~~A~~~~~~~~~---~~~------~p~~~~~~~ll~~~~~~g~~~~A~ 690 (783)
+-||.-|...-.|.+++|.+.|-+++. ++- .++..+|.+|=.++.-.++.|-+.
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 345555543334677777776665432 211 122345666655555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=5e-05 Score=77.15 Aligned_cols=215 Identities=10% Similarity=0.016 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
+++.+-..+...++.++|+.+.+++++.+ +.+..+|+.....+.+.| ++++++..++++++.++ .+..+|+...-.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 44444444555556666666666666554 233344554444444444 34555555555555543 3333444333333
Q ss_pred HhcCCh--hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 039931 185 CRNGCI--RIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262 (783)
Q Consensus 185 ~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 262 (783)
.+.|.. ++++ ...+.+.+...+ |..+|+...-.+.
T Consensus 117 ~~l~~~~~~~el------------------------------------------~~~~kal~~dpk-Ny~AW~~R~w~l~ 153 (320)
T PLN02789 117 EKLGPDAANKEL------------------------------------------EFTRKILSLDAK-NYHAWSHRQWVLR 153 (320)
T ss_pred HHcCchhhHHHH------------------------------------------HHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 333321 2233 344444443322 5566666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---CCh----hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKY---GGM----EDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA- 334 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 334 (783)
+.|+++++++.++++++.++. |...|+.....+.+. |.. +++.+...+++...+ -|...|+-+...+...
T Consensus 154 ~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 154 TLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDK 231 (320)
T ss_pred HhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCC
Confidence 666666666666666665544 444555444333332 111 233333434443322 2344444444444441
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 039931 335 ---GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR 368 (783)
Q Consensus 335 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 368 (783)
+...+|...+.+....++. +......|++.|+.
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 232 EALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2334455555555543322 45555556666554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.8e-08 Score=60.57 Aligned_cols=32 Identities=38% Similarity=0.880 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 596 GLDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 596 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-05 Score=76.05 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYG-GMEDGDRLLRDLSVSGLLPNCTLYDITVAGL 331 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (783)
++..+-..+...++.++|+.+++++++.... +..+|+.--.++...| ++++++..++++.+.+.+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 3444445566678889999999998886332 3345555555555666 567888888887776543 334455444444
Q ss_pred HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 039931 332 CWAGR--LDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK---GR 406 (783)
Q Consensus 332 ~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~ 406 (783)
.+.|+ .+++..+++++.+.... |..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 45554 25677777777776555 7777887777777778888888888888776644 555665555444443 22
Q ss_pred h----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 407 L----PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRI----GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 407 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
. ++.++...+++...+. |...|+-+...+... +...+|.+.+.+..+.++. +......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 3455555566655433 666666666666552 2334466666555543322 45555555555553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=83.35 Aligned_cols=230 Identities=16% Similarity=0.100 Sum_probs=136.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
+.+.|++.+|.-.|+..+...+. +...|--|......+++-..|+..+++..+... -|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 55667777777777776666544 566666666666666666666666666666532 2445555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-h
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS-R 489 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 489 (783)
...++..+...++ ..|. ... ...++.. +. ..+.....+....++|-++. .
T Consensus 373 l~~L~~Wi~~~p~---y~~l--~~a-~~~~~~~---------------~~--------~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK---YVHL--VSA-GENEDFE---------------NT--------KSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhCcc---chhc--ccc-Ccccccc---------------CC--------cCCCCHHHHHHHHHHHHHHHHh
Confidence 6666665554322 0000 000 0000000 00 01111122233444444443 3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVT 568 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 568 (783)
.+..+|+.+...|.-.|--.|++++|...|+..+...+. |..+||.|...++...+.++|+..|.++++ ++|+ +.+
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~ 500 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRV 500 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeee
Confidence 333456666666666677777888888888877776544 677788888888877788888888888777 4665 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+..|.-.|...|.+++|.+.|-..+.
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 55666667777888888777766554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0045 Score=68.07 Aligned_cols=495 Identities=14% Similarity=0.094 Sum_probs=258.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhH
Q 039931 114 YLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIG 193 (783)
Q Consensus 114 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 193 (783)
..|.|+.++|..+++.....+. .|..|...+-..|.+.|+.++|..+|++..... |+..-...+..+|.+.+.+.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988888776653 478888899999999999999999999998865 4577777778888888887665
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CcchHhh--hccchHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhH
Q 039931 194 ESLLHVMHKYMCVADFFAYNILINAYCIRG-QTSYALG--KCGAGRMIFDMIQEEG-LSPNVVVYNALLNGYVKARDIDQ 269 (783)
Q Consensus 194 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~--~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~ 269 (783)
.+.--++-+. .+.+.+.+=++++.+...- ..++... ...-|.+.++.+.+.+ ---+..-...-...+-..|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5544444442 3455566556666655432 2222211 1123466667776654 21122223333345567888999
Q ss_pred HHHHHH-HHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH----------------H
Q 039931 270 ANMLYE-EMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGL----------------C 332 (783)
Q Consensus 270 A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----------------~ 332 (783)
|++++. ...+.-..-+...-+--+..+...+++.+-.++-.++...|... |...++.+ .
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhh
Confidence 999994 34333333344445566677888899999888888888776442 22222211 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYS---RAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
..+..+...+..++..... ....|-+-+.++. .-|+.+++...|-+- .|..| .|..=+..|...=..+.
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHH
Confidence 1223333333333333221 1112333333333 346666655444221 12111 12212222222222222
Q ss_pred HHHHHHHHHHcCCCC--CHh---hHHHHHHHHHhcC-----CHHHHHHHHHHHH---hC------CCCCCH---------
Q 039931 410 AWDLLCKMIEKGFPI--NKV---AFTVLLDGYFRIG-----DLIGAQSLWNELN---RR------KIFPDA--------- 461 (783)
Q Consensus 410 a~~~~~~~~~~~~~~--~~~---~~~~li~~~~~~g-----~~~~A~~~~~~~~---~~------~~~p~~--------- 461 (783)
-..++.......... |.. .+...+..-.-.| +.+.-..++.+.. +. ++-|+.
T Consensus 357 ~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ll 436 (932)
T KOG2053|consen 357 LKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLL 436 (932)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHH
Confidence 222222222211000 000 0111111111112 1112222221111 11 222222
Q ss_pred HHHHHHHHHHHccCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVD---EAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIII 538 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 538 (783)
-+-+.|++.+-+.++.. +|+-+++.-.... +.|..+--.+|..|+-.|-...|.++|+.+--+.+..|...|. +.
T Consensus 437 Lav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 437 LAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence 23356677777777655 4444555444432 3445555667788888888888888888877666665554443 23
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 539 NGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADELV---NKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 539 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~---~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
.-+...|++..+...++...+- ..-+ ..+-..+..+| +.|.+.+..+.. ++|.......-..+=+..++..+..
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455677888887777766542 1111 12222233333 555555544433 3333211111223345566777777
Q ss_pred CCHHHHHHHHHHHH
Q 039931 615 RKMNQAAMMLDELV 628 (783)
Q Consensus 615 g~~~~A~~~~~~m~ 628 (783)
++.++-...++.|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 77777777777665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00011 Score=68.37 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHH---cC-CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039931 545 GRMKPAIDAFMDMYR---TG-LVPDI-VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQ 619 (783)
Q Consensus 545 g~~~~A~~~~~~m~~---~g-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 619 (783)
.+.++..+++.++.. .| ..|+. ..|..++-+....|+.+-|...++++... ++-+..+-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 455666666666552 23 33443 24555566667788888888888888774 32233333333445667789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-hhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 620 AAMMLDELVSAGIVPNTVTYNTLMNGV-CCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 620 A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
|+++++.+++.+ .-|.+++--=+... ..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.-.+++++=
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988754 22445553222221 125555788777776653 566889999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHhhhh--HHHHHHHHHHhcCCCcchhhhHHH
Q 039931 699 ISFDFDETSYKIMDRAYHNIQ--ENAEFFQETSEKSLFLDFLMGCMT 743 (783)
Q Consensus 699 ~~~~~d~~~~~~l~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 743 (783)
+.|- ++..+..+++.+...+ ++++.+++++++++++.+-..+.+
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 8875 8888888898876543 889999999999999988555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00013 Score=83.14 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHH
Q 039931 251 VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPD-----AVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYD 325 (783)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 325 (783)
...|-..|....+.++.++|++++++.+.. +.+. .-.|.++++.-...|.-+...++|+++.+.. ....+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 456667777777777777777777776654 2111 1235555555555555555566666555431 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS---SCTCSSLLVGLC 402 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 402 (783)
.|...|.+.+++++|.++|+.|.++ +......|...+..+.+.++-+.|..++.+..+. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 5556666666666666666666553 1124455555556666665555666655555543 122 112222333334
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 039931 403 KKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIF 458 (783)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (783)
+.|+.+.+..+|+..+...+ --...|+..++.-.+.|+.+.++.+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 55555555555555555422 24455555555555555555555555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-05 Score=83.39 Aligned_cols=221 Identities=16% Similarity=0.095 Sum_probs=174.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039931 387 LTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSA 466 (783)
Q Consensus 387 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 466 (783)
++|--..-..+...+.+.|-...|..+++++ ..|.-++.+|+..|+..+|..+..+..++ .||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 4444445566777888899999999999875 45667788999999999999998888774 578899999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039931 467 YINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGR 546 (783)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 546 (783)
+.+......-+++|.++++..... .-..+.....+.++++++.+.|+.-.+..+- -..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhh
Confidence 998888888889999998876542 1111222223478899999999887765433 56788888888889999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 625 (783)
++.|.+.|...+.- .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999998873 564 6789999999999999999999999999866 4455667777777889999999999999
Q ss_pred HHHH
Q 039931 626 ELVS 629 (783)
Q Consensus 626 ~m~~ 629 (783)
++.+
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 9875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.3e-05 Score=83.66 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=132.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIA 504 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 504 (783)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 3445556666666666666666666654443221 122222222234444443333332 1222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH
Q 039931 505 GFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVR 584 (783)
Q Consensus 505 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 584 (783)
......++.-...+.+.|... .-+...+-.+..+|-+.|+.++|..+|+++++.. +-|..+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222233332223333333332 1133455666677777777777777777777654 23566677777777766 7777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHc
Q 039931 585 ADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKM 664 (783)
Q Consensus 585 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~ 664 (783)
|.+++.+.+.. |...+++.++.++|.++... .|+.+.+- .++.+++...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f--------------~~i~~ki~~~ 216 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFF--------------LRIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHH--------------HHHHHHHHhh
Confidence 77777666542 55556777777777777653 33332221 1111122111
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 665 -AFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 665 -~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
|..--..++..+-..|.+..++++++.+++.+++..++ |..+..-++..|.....+...+++.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHccCcchHHHH
Confidence 11222334555555667777888888888888888877 6777777777665433333333333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-05 Score=72.50 Aligned_cols=166 Identities=13% Similarity=0.055 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.|..+ -.+...+.-.|+-+.+..+........ +.+....+.++....+.|++..|...|.+.....| +|..+|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhH
Confidence 3445555 556666666677776666666644332 34445555567777777777777777777766654 66667777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLN 259 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 259 (783)
+.-+|.+.|++++|..-|.+..+.- .-+....|.+.-.|.-.|+.+.| +.++......+.. |...-..|..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A-------~~lll~a~l~~~a-d~~v~~NLAl 210 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDA-------ETLLLPAYLSPAA-DSRVRQNLAL 210 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHH-------HHHHHHHHhCCCC-chHHHHHHHH
Confidence 7777777777777777777666543 23444555555555566666666 4455544443322 4445555555
Q ss_pred HHHhcCChhHHHHHHHHH
Q 039931 260 GYVKARDIDQANMLYEEM 277 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m 277 (783)
.....|++++|.++-..-
T Consensus 211 ~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 211 VVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHhhcCChHHHHhhcccc
Confidence 666666666666655443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0002 Score=81.52 Aligned_cols=220 Identities=10% Similarity=-0.035 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEK-GFP---INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYI 468 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 468 (783)
.|-.-|......++.++|.++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. . ....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHHHHH
Confidence 3444444444444444444444444432 000 011234444444444444444455555444421 0 122344444
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCh
Q 039931 469 NGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLL-PDNFTFNIIINGFCKQGRM 547 (783)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 547 (783)
..|.+.+.+++|-++++.|.+. +.-....|...++.+.+.++-+.|..++.+..+.=++ -.+....-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555555555555555555443 1223344444455555555555555555554443111 0122222333334445555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC
Q 039931 548 KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI--TTYNIRMHGYCNIRK 616 (783)
Q Consensus 548 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~ 616 (783)
+.+..+|+..+..- +--...|+..|+.-.++|+.+.++.+|++....++.|-. ..|.-.+..=-+.|+
T Consensus 1617 eRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 55555555554431 223445555555555555555555555555555444422 334444433334444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00012 Score=72.05 Aligned_cols=186 Identities=13% Similarity=0.019 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--H
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE---SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN--Y 175 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~ 175 (783)
+..+..+-.+...|.+.|++++|...|+++.... +.+. .++..+...+.+.|++++|...|+++++..|.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456788899999999999999999999998875 2222 46788899999999999999999999987663332 2
Q ss_pred HHHHHHHHHHhc--------CChhhHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC
Q 039931 176 TFNALILGFCRN--------GCIRIGESLLHVMHKYMCVADF-FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 176 ~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
++..+..++... |++++|.+.++++.+.. |+. ..+..+... . .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~----------------~~~~~~~--- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-D----------------YLRNRLA--- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-H----------------HHHHHHH---
Confidence 455566666654 77888899988887653 332 222222111 0 0001000
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 247 LSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDI--APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 247 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
.....+...|.+.|++.+|+..+++..+... +.....+..+..++.+.|+.++|...++.+..
T Consensus 167 -----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 -----GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -----HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0112455667788888888888888776522 11235566666777777777777766666554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-05 Score=82.50 Aligned_cols=118 Identities=9% Similarity=-0.028 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.+.|..-....+. +...||.+-.+|.+.|+-.+|...
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHH
Confidence 344444444444433321 122334444444444445555555544444433211 334455555555555555555555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 554 FMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 554 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 55554443 22333444444444455555555555544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-05 Score=69.44 Aligned_cols=108 Identities=10% Similarity=-0.066 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
+..+..+..++...|++++|...|+.++..+ +.+...|..+...+.+.|++++|+..|++.++.+| .+..++..+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3345567888999999999999999999987 56889999999999999999999999999999876 788899999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
+...|++++|...|++..+.. +.+...+..
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 999999999999999998864 334444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=71.70 Aligned_cols=184 Identities=16% Similarity=0.053 Sum_probs=104.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH----HH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIF-PD-AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN----FA 498 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~ 498 (783)
....+..+...+.+.|+++.|...|+++....+. |. ..++..+...+.+.|++++|...++++.+.. |+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 4556666777777777777777777777665322 11 1355666677777777777777777776642 221 13
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 039931 499 YNSLIAGFCNR--------GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYN 570 (783)
Q Consensus 499 ~~~li~~~~~~--------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 570 (783)
+..+..++.+. |+.++|.+.++.+....+. +...+..+.... ..... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~~-------~~-------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRNR-------LA-------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHHH-------HH-------HHHH
Confidence 34444444433 5566666666666655322 222221111100 00000 00 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 571 TLIGGYCKALDIVRADELVNKMYAGGL-DP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.+...+.+.|++++|...+++..+..- .| ....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445567777888888888887776310 12 245677777888888888888887777664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00031 Score=78.88 Aligned_cols=131 Identities=9% Similarity=0.001 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLI 573 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li 573 (783)
+...+..|.....+.|.+++|..+++...+..+. +......++..+.+.+++++|+..+++.... .| +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 3445555555555555555555555555554222 3344444555555555555555555555543 23 233444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++.++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555411 12245555555555555555555555555553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=62.66 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 039931 433 LDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN---- 508 (783)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 508 (783)
...|+..|++++|++..+... +......=+..+.+..+++-|.+.+++|.+. .+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555555555555554411 1111112223344455555555555555542 234444444444432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 509 RGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.+++.+|.-+|++|.++ ..|++.+.+....++...|++++|..++++.+..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455555555555543 3445555555555555555555555555555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00051 Score=64.57 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=51.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH----hc
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC----WA 334 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 334 (783)
..|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+.+ +..+.+.|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 12222222223334444555555555554432 2222322222222 22
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (783)
+++.+|.-+|++|.++ ..|+..+.+-+..++...|++++|..++++....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455555555555442 3344445555555555555555555555555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00016 Score=68.27 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--hhHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG-LCKKGR--LPEA 410 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 410 (783)
.++.+++...+++.++..+. |...|..+...|...|++++|...|++..+... .+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554433 566666666666666666666666666665432 244445555544 244444 3566
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665433 5555555556666666666666666665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00044 Score=77.64 Aligned_cols=218 Identities=13% Similarity=0.060 Sum_probs=149.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039931 318 LPNCTLYDITVAGLCWAGRLDEAM-EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS 396 (783)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 396 (783)
..++...+.+-......|..++|- +++.+..+ ++..........+++.-....... ...+...+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVL 91 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence 344555555556666777776663 44444432 233333333333333333333222 3446778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGL 476 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 476 (783)
|.....+.|..++|..+++.+.+..+. +......+...+.+.+++++|+...++.....+. +....+.+..++.+.|+
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcc
Confidence 888888999999999999988887433 6777888888899999999999999988887655 66777788888889999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039931 477 VDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMD 556 (783)
Q Consensus 477 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 556 (783)
+++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+. ..|....|+..+ +++..-..++++
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~ 241 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRR 241 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHH
Confidence 999999999988743 334778888888888899999999999988776 234555555543 233444455555
Q ss_pred HH
Q 039931 557 MY 558 (783)
Q Consensus 557 m~ 558 (783)
+.
T Consensus 242 ~~ 243 (694)
T PRK15179 242 LG 243 (694)
T ss_pred cC
Confidence 54
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.5e-05 Score=72.03 Aligned_cols=124 Identities=8% Similarity=-0.022 Sum_probs=104.3
Q ss_pred hHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHH
Q 039931 86 SKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSL-LRVGD--YGSVWKLF 162 (783)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l-~~~g~--~~~A~~~~ 162 (783)
..+.+..+.......|.+...|..|...|...|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|.+++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455666666666678899999999999999999999999999999987 56788888888875 67777 59999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhH
Q 039931 163 RDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAY 212 (783)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 212 (783)
++.++.+| .+..++..+...+...|++++|...++++.+.. +|+..-+
T Consensus 134 ~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 134 DKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 99999877 577889999999999999999999999998875 4555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00056 Score=77.54 Aligned_cols=222 Identities=14% Similarity=0.072 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----------
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP---------- 170 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~---------- 170 (783)
+.+...+..|+..|...+++++|.++.+..++.. +.....|..+...+...++.+++..+ .+...-.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 5677899999999999999999999999877764 33344444555566777776666555 3332211
Q ss_pred --------CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHH
Q 039931 171 --------RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMI 242 (783)
Q Consensus 171 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m 242 (783)
..+..++..+..+|-+.|+.++|..+++++++.. +.|+.+.|-+.-.|+.. ++++|+ ++..+.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~-------~m~~KA 175 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI-------TYLKKA 175 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH-------HHHHHH
Confidence 0112344555555555666666666666666554 44555566666555555 555552 222222
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC-CCCCcH
Q 039931 243 QEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS-GLLPNC 321 (783)
Q Consensus 243 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 321 (783)
.. .|...+++..+.++|.++....+ + +++.-.++.+.+... +..--+
T Consensus 176 V~---------------~~i~~kq~~~~~e~W~k~~~~~~--~---------------d~d~f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 176 IY---------------RFIKKKQYVGIEEIWSKLVHYNS--D---------------DFDFFLRIERKVLGHREFTRLV 223 (906)
T ss_pred HH---------------HHHhhhcchHHHHHHHHHHhcCc--c---------------cchHHHHHHHHHHhhhccchhH
Confidence 11 14444555555555555555421 1 222222233333322 222334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 322 TLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYS 367 (783)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 367 (783)
.++-.+-..|-..++++++..+|+.+++.... |.....-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 44555666777888888999999988887555 6666677777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0004 Score=65.41 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGF 541 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 541 (783)
.....++....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+.+.|..-|.+..+..+. ++..+|.+...+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHH
Confidence 333334444445555555555555444332 344444555555555555555555554444444222 333444444444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 039931 542 CKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVN 590 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 590 (783)
.-.|+.+.|..++......+ .-|...-..|.-.....|++++|.++..
T Consensus 179 ~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 44455555555544444332 1133444444444444555555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00023 Score=63.51 Aligned_cols=90 Identities=7% Similarity=-0.175 Sum_probs=40.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH
Q 039931 503 IAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDI 582 (783)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 582 (783)
...+...|++++|...|+......+. +...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 33444444444444444444443222 34444444444444444444444444444421 12344444444444444444
Q ss_pred HHHHHHHHHHHH
Q 039931 583 VRADELVNKMYA 594 (783)
Q Consensus 583 ~~A~~~~~~m~~ 594 (783)
++|+..|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=64.84 Aligned_cols=110 Identities=9% Similarity=0.000 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.+......+...+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...|++.++.++ .+...+..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~ 90 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFH 90 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 34455677888899999999999999999998876 56788899999999999999999999999988865 56777888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYN 213 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 213 (783)
+...+...|++++|...|++..+.. |+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 8999999999999999999998764 5544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0043 Score=58.12 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=50.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
.|++++|.++++.+.+.. +.|.+++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444332 233333433333333344444444444444433 222455555555555555555555555
Q ss_pred HHHHHHcCCCC-ChhHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 039931 554 FMDMYRTGLVP-DIVTYNTLIGGYCKAL---DIVRADELVNKMYA 594 (783)
Q Consensus 554 ~~~m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 594 (783)
+++++-. .| +...+..+...+.-.| +.+-|.+++.+.++
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555442 23 2333333333332222 33445555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.4e-06 Score=52.43 Aligned_cols=35 Identities=43% Similarity=0.741 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA 286 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 286 (783)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0024 Score=65.64 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=5.8
Q ss_pred HccCChHHHHHHHHHH
Q 039931 472 SKAGLVDEAYGVFLEM 487 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m 487 (783)
.+.++.++|.+.++.+
T Consensus 351 ~~~nk~~~A~e~~~ka 366 (484)
T COG4783 351 LEANKAKEAIERLKKA 366 (484)
T ss_pred HHcCChHHHHHHHHHH
Confidence 3333333333333333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0035 Score=64.43 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=119.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
...+...|++++|+..+..++.. .+-|+.......+.+.+.++.++|.+.++.+....+. ....+-.+..+|.+.|+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCCh
Confidence 33456788999999999998887 4458888888899999999999999999999887433 266777888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
.+|..+++...... +-|+..|..|.++|...|+..++..-.. .+|...|++++|+..+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHH
Confidence 99999999988763 6688899999999999999877766443 4566689999999998888
Q ss_pred HHcCCCCChhHH
Q 039931 558 YRTGLVPDIVTY 569 (783)
Q Consensus 558 ~~~g~~p~~~~~ 569 (783)
.+. ..++..+|
T Consensus 452 ~~~-~~~~~~~~ 462 (484)
T COG4783 452 SQQ-VKLGFPDW 462 (484)
T ss_pred HHh-ccCCcHHH
Confidence 765 24444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00041 Score=61.41 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN 613 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 613 (783)
...+...+...|++++|.+.|+.+...+ +.+...|..+...+...|++++|...+++..+.+ +.+..++..+..+|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444445555555555555555555432 2244455555555555555555555555554422 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 614 IRKMNQAAMMLDELVS 629 (783)
Q Consensus 614 ~g~~~~A~~~~~~m~~ 629 (783)
.|++++|...|++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.1e-05 Score=50.14 Aligned_cols=33 Identities=42% Similarity=0.652 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAP 284 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 284 (783)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999888877
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.6e-05 Score=49.41 Aligned_cols=33 Identities=30% Similarity=0.697 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN 635 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 635 (783)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=58.54 Aligned_cols=126 Identities=10% Similarity=0.023 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPD--NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD--IVTYNTLIG 574 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~ 574 (783)
|..++..+ ..++...+...++.+.+...... ....-.+...+...|++++|...|+........|+ ......|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 34444444 36667777777777776533211 22233345666777777788777777776542222 224455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
.+...|++++|+..++..... ......+....++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777778888888777664321 223445666677888888888888777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=68.86 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 579 (783)
.+|+..+...++++.|..+|+++.+.. |++ ...++..+...++-.+|.+++++.++.. +-+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777763 333 3346666666777777777777777542 23555566666667778
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 580 LDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 580 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
++++.|+++.+++.+ +.|+ ..+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888876 4564 4678888888888888888887777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0014 Score=68.12 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 404 (783)
.+|+..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777763 33 34446666666777777777777776543 22444455555556667
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 405 GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
++.+.|+.+.+++.+..+ .+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777666632 245566666667777777766666666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.8e-05 Score=47.45 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVP 634 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 634 (783)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00084 Score=69.92 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 456 KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRI--GFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT 533 (783)
Q Consensus 456 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 533 (783)
+...+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33447777888888888888888888888888765 2222234556889999999999999999888888899999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 579 (783)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666777776666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.004 Score=55.76 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhH
Q 039931 334 AGRLDEAMEFFEDMFEKGISP--SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS--CTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 409 (783)
.++...+...++.+.+....- .....-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555555566655542221 0122223345555566666666666666554322211 122334445555566666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
|+..++..... ......+....+++.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655443222 12333444555555555555555555543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.4e-05 Score=46.64 Aligned_cols=31 Identities=42% Similarity=0.802 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDI 282 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 282 (783)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00095 Score=54.32 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+......+ .+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 35667788888999999999999998875 34557788888999999999999999999988765 45567888888999
Q ss_pred hcCChhhHHHHHHHHHhC
Q 039931 186 RNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~ 203 (783)
..|+++.|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=60.17 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
|..+...+...|++++|+..|++.+...+.+ ...++..+...+...|++++|+..+++..+.. +....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3444444445555555555555554432222 12345555555555566666665555555432 22233344444444
Q ss_pred H-------hcCCcchHhhhccchHHHHHHHHH
Q 039931 220 C-------IRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 220 ~-------~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
. +.|++++|+..+++|..+++....
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~ 148 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIA 148 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 4 667777776666666677776655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00032 Score=67.36 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMN-GVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQG 684 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g 684 (783)
.+-..+.+++.+|+..|.+.++ +.|...+|.+-=. +|++ |.++.|++-.+..+. +.|.. .+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 4566788999999999999987 5777766655443 4555 888999999998888 67765 78999999999999
Q ss_pred ChhhHHHHHHHHhhcCCCCCHHHHHHHH
Q 039931 685 MPEKTLLWGQKLSEISFDFDETSYKIMD 712 (783)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~d~~~~~~l~ 712 (783)
++++|++.|+++++++|. +.+.+..|.
T Consensus 164 k~~~A~~aykKaLeldP~-Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPD-NESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCC-cHHHHHHHH
Confidence 999999999999999976 554443333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0024 Score=54.83 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIM--PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNAL 180 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 180 (783)
.++-.++..+.+.|++++|...|..+.+.... .....+..+...+.+.|+++.|...|+.+....|.. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35677888899999999999999999876421 114567779999999999999999999998865542 24567888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
..++...|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999998875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=69.11 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=106.3
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR--KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN 496 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 496 (783)
..+.+.+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 3455667888888999999999999999999988775 22223345679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
.++|.|++.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999998887777777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=63.12 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=82.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh-c
Q 039931 573 IGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC-D 649 (783)
Q Consensus 573 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~-~ 649 (783)
..-..+.+++++|+..|.+.++ +.| |.+.|..-..+|++.|.++.|++-.+..+. +.|.. .+|..|-.++.. |
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 4557788999999999999998 566 667788889999999999999999998876 45553 678888887765 8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039931 650 ILDRAIIIAAKLLKMAFVPNVVTTNVLLS 678 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 678 (783)
++++|++.|++.++ +.|+..+|-.=+.
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999999999999 8899887744433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=52.85 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=32.2
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 578 KALDIVRADELVNKMYAGGL-DPDITTYNIRMHGYCNIR--------KMNQAAMMLDELVSAGIVPNTVTYNTLMNGV 646 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 646 (783)
..+++...-.+++.+.+.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.++..+
T Consensus 37 ~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 37 ENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred hhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 33444444444444444444 444444444444333321 2333444555555555555555555555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00023 Score=54.23 Aligned_cols=68 Identities=25% Similarity=0.212 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcch
Q 039931 669 NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDF 737 (783)
Q Consensus 669 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~ 737 (783)
+..+|..+...+...|++++|+..++++++++|. ++.+|..++.+|...+++.+.+.+.+++++.++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777788888888888888877776 6777777777765533367777777777666554
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00017 Score=44.64 Aligned_cols=29 Identities=34% Similarity=0.740 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAG 631 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 631 (783)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=63.01 Aligned_cols=262 Identities=13% Similarity=0.045 Sum_probs=116.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHH--h--CCC-CCCHHhHHHHHHH
Q 039931 148 SLLRVGDYGSVWKLFRDMIHLGPRPSN----YTFNALILGFCRNGCIRIGESLLHVMH--K--YMC-VADFFAYNILINA 218 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~--~--~g~-~~~~~~~~~li~~ 218 (783)
-+++.|+....+.+|+..++.|.+ |. ..|.-|.++|.-.+++++|++.+..=+ . .|- .-...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 356666666666666666665542 22 235556666666666666666543211 0 010 1122233445555
Q ss_pred HHhcCCcchHhhhccc----hHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 039931 219 YCIRGQTSYALGKCGA----GRMIFDMIQEEGLSPNVVVYNALLNGYVKARD--------------------IDQANMLY 274 (783)
Q Consensus 219 ~~~~g~~~~A~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------------~~~A~~~~ 274 (783)
+--.|.+++|+-.|.. |+++=+++.+ ..++..|...|...|+ ++.|.+.|
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 5666777777655432 3333333332 2234445555554443 22333333
Q ss_pred HHHHh----CCC-CCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 275 EEMRS----RDI-APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS----GLL-PNCTLYDITVAGLCWAGRLDEAMEFF 344 (783)
Q Consensus 275 ~~m~~----~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (783)
.+=++ .|- -..-..|..|.+.|.-.|+++.|...++.-... |-. .....+..+.++++-.|+++.|.+.+
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 33211 110 001223455555555566677666655443221 111 11223444555555555555555555
Q ss_pred HHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 345 EDMFEK----GI-SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF----G-LTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 345 ~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
+.-... |- .....+..+|.+.|.-..++++|+.++.+-... + ..-....|.+|..++...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 543321 10 112223344444444445555555444332110 0 0112233444455555555555554444
Q ss_pred HH
Q 039931 415 CK 416 (783)
Q Consensus 415 ~~ 416 (783)
+.
T Consensus 339 e~ 340 (639)
T KOG1130|consen 339 EL 340 (639)
T ss_pred HH
Confidence 43
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.05 Score=53.25 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=34.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAF---NSIIAAYSRAGLEENAFEAYKIMHQFG 386 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~ 386 (783)
.+...|++++|.+.|+++....+.+ .... -.++.+|.+.+++++|...+++..+..
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3455677777777777777653332 2221 334566677777777777777776653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0062 Score=59.17 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=105.1
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHH
Q 039931 87 KHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG---DYGSVWKLFR 163 (783)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g---~~~~A~~~~~ 163 (783)
..++..+.......|.|..-|..|.++|.+.|+++.|..-|.+..+.. +++...+..+..++..+. ...++..+|+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 345556666666778999999999999999999999999999999886 578888888888887665 3468999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 164 DMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
++++.++ .|+.+...+...+...|++.+|...++.|++.. |....+..+|.
T Consensus 218 ~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 218 QALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 9999876 788888889999999999999999999999875 33344444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0053 Score=52.69 Aligned_cols=101 Identities=12% Similarity=-0.034 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCC----HHHH
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT----VTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPN----VVTT 673 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~----~~~~ 673 (783)
++..++..+.+.|++++|.+.|+++.+. .|+. ..+..+...+.. +++++|...++++... .|+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHH
Confidence 3445555556666666666666666542 1221 122222223332 5666666666665542 122 2445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 674 NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 674 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
..+...+.+.|+.++|.+.++++.+..|+ +..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 113 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG-SSAAK 113 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC-ChhHH
Confidence 56666777788888888888888887765 44444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0041 Score=64.95 Aligned_cols=101 Identities=6% Similarity=-0.019 Sum_probs=86.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
.....+...|++++|+..|+++++.+ +.+...|..+..+|.+.|++++|+..+++++...+ .+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 34566778899999999999999987 56778888999999999999999999999999876 57778999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHH
Q 039931 189 CIRIGESLLHVMHKYMCVADFFAYN 213 (783)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~ 213 (783)
++++|...|++.++.. |+.....
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHH
Confidence 9999999999998864 4444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0067 Score=56.16 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
....+..+...|...|++++|...|++.++.+..++ ...+..+...+.+.|++++|+..+.+.+...+ .+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 345788899999999999999999999987653332 46788899999999999999999999998765 456677778
Q ss_pred HHHHHhcCC--------------hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 039931 181 ILGFCRNGC--------------IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 181 ~~~~~~~g~--------------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (783)
...+...|+ +++|.+.+++..+.+ |+ .|..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence 888888776 455666666665432 33 36666666655554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0037 Score=50.84 Aligned_cols=74 Identities=20% Similarity=0.419 Sum_probs=37.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 503 IAGFCNRGKLNEALKLEREMRQKGL-LPDNFTFNIIINGFCKQG--------RMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544322 1223444555555555555555555555
Q ss_pred HHH
Q 039931 574 GGY 576 (783)
Q Consensus 574 ~~~ 576 (783)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.004 Score=50.49 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRK 616 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 616 (783)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3334444444455554444444321 1122334444444444455555555554444421 1122344444445555555
Q ss_pred HHHHHHHHHHHH
Q 039931 617 MNQAAMMLDELV 628 (783)
Q Consensus 617 ~~~A~~~~~~m~ 628 (783)
+++|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0065 Score=61.36 Aligned_cols=212 Identities=10% Similarity=0.088 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGI---MPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
..|......|...|++++|...|.+..+... .+. ...|......+ +.+++++|++.|++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH--------------
Confidence 4677788888888888888888887644210 000 01122222222 222444444444443
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
+..|...|++..|-.++.++- ..|-.. |++++|+..+++|..+|+.-... .--...+..+.
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~--~~a~~~~~~~A 162 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSP--HSAAECLLKAA 162 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCCh--hhHHHHHHHHH
Confidence 455677777777766665543 455566 78888888887777777653210 01134567788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC-----Hh-HHHHHHHHHHccCChhHHHHHHHHHHhCCC--CC--cHHHHHHHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPD-----AV-TFNIIVSGHCKYGGMEDGDRLLRDLSVSGL--LP--NCTLYDITV 328 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~--~~~~~~~li 328 (783)
..+.+.|++++|.++|++....-...+ .. .|...+-++...|+...|.+.+++.....+ .. .......|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 889999999999999999876533211 11 122223345556777778777777765432 11 122334444
Q ss_pred HHHHh--cCCHHHHHHHHHHHHH
Q 039931 329 AGLCW--AGRLDEAMEFFEDMFE 349 (783)
Q Consensus 329 ~~~~~--~g~~~~A~~~~~~m~~ 349 (783)
.++-. ...+.+|..-|+.+..
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHhCCHHHHHHHHHHHcccCc
Confidence 44432 1224455555544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0077 Score=55.77 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS--NYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILI 216 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (783)
...+..+...+...|++++|...|++.++..+.+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34577788888999999999999999998655443 4678889999999999999999999998764 34566777777
Q ss_pred HHHHhcCCcchHh
Q 039931 217 NAYCIRGQTSYAL 229 (783)
Q Consensus 217 ~~~~~~g~~~~A~ 229 (783)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 8888877765553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.29 Score=49.68 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=142.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
.+.+..++.+|+..+...++..+. ++.-|..-...+...|++++|.--.+.-.+.... .+......-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 355667777777777777776554 4566666666677777777777666555443211 11223333334444444444
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHccCChHHHHHHHHHH
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI-FPDAVAFSAYI-NGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m 487 (783)
|.+.++. ...+ ....|+..++....... +|...+|..+- ..+.-.|+.++|..+--..
T Consensus 136 A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 4444431 0000 11122222222222111 12222222221 2334455666666555555
Q ss_pred HhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCChHHHHH
Q 039931 488 SRIGFVPNNFAYNSLIAGF--CNRGKLNEALKLEREMRQKGLLPDNFT-------------FNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 488 ~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~~ 552 (783)
.+.. ....+...+++. --.++.+.|...|++.+..+ |+... +..=.+-..+.|++..|.+
T Consensus 196 lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 5432 111222223222 23445555666665555442 22111 1111234567889999999
Q ss_pred HHHHHHHc---CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 553 AFMDMYRT---GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 553 ~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
.|.+.+.. ...|+...|.....+..+.|+.++|+.--+...+ +.|.. ..|..-..++.-.++|++|.+-+++..
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888853 2334455666667777788999999888888775 33321 223333456666788899988888877
Q ss_pred HC
Q 039931 629 SA 630 (783)
Q Consensus 629 ~~ 630 (783)
+.
T Consensus 349 q~ 350 (486)
T KOG0550|consen 349 QL 350 (486)
T ss_pred hh
Confidence 53
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0082 Score=55.35 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMP--SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
...+..+...+...|++++|+..|++.+.....+ ...++..+...+...|++++|+..|++.+...+ ....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 4567888889999999999999999998764222 235788899999999999999999999998754 4456677777
Q ss_pred HHHH-------hcCChhhHHHHHHHH
Q 039931 182 LGFC-------RNGCIRIGESLLHVM 200 (783)
Q Consensus 182 ~~~~-------~~g~~~~A~~~~~~m 200 (783)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777 778877665555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.016 Score=63.19 Aligned_cols=65 Identities=11% Similarity=-0.015 Sum_probs=52.8
Q ss_pred HHHHHHH-HHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 636 TVTYNTL-MNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 636 ~~~~~~l-i~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
...|.++ +.+...|+.++|...+++++. +.|+...|..+...+...|+.++|...++++..++|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3445444 223345899999999999998 5588888988998999999999999999999999976
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.074 Score=52.07 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=30.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRT--GLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 592 (783)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|.+....+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 445566666666666666666653 11112334445556666666666666555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0063 Score=53.53 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
...-.+..-+...|++++|.++|+-+...+ +-+..-|..|.-.+-..|++++|+..|......+| .|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 344556667788999999999999999887 45677788899999999999999999999999886 7888888899999
Q ss_pred HhcCChhhHHHHHHHHHhC
Q 039931 185 CRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~ 203 (783)
...|+.+.|++.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00077 Score=53.72 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 117 VEMSAEVMEILYRMREVGIM-PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
.|+++.|+..|+++.+.... ++...+..+...+.+.|++++|+.++++ .+.++ .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57788888888888887532 1344555578888888888888888887 43333 233444455788888888888888
Q ss_pred HHHH
Q 039931 196 LLHV 199 (783)
Q Consensus 196 ~~~~ 199 (783)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0069 Score=60.91 Aligned_cols=129 Identities=10% Similarity=0.001 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK-QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY 576 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 576 (783)
+|..++....+.+..+.|..+|.+..+.+. .+...|-.....-.+ .++.+.|..+|+..++. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 444555555555555556666665553321 122333333333222 34444466666655554 334455555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 577 CKALDIVRADELVNKMYAGGLDPDI---TTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 577 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.+.++.+.|..+|++.+.. +.++. ..|...+.-=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666665542 22211 3555555555566666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.025 Score=49.85 Aligned_cols=85 Identities=9% Similarity=-0.083 Sum_probs=34.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 039931 366 YSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGA 445 (783)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 445 (783)
+...|++++|.++|+.+...++ -+..-|..|.-.+-..|++++|+..|.......+. |+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444433321 12233333333444444444444444444443322 334444444444444444444
Q ss_pred HHHHHHH
Q 039931 446 QSLWNEL 452 (783)
Q Consensus 446 ~~~~~~~ 452 (783)
++-|+..
T Consensus 123 ~~aF~~A 129 (157)
T PRK15363 123 IKALKAV 129 (157)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0088 Score=60.14 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-FCNRGKLNEALKLEREMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 540 (783)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776532 2233334333333 22345666688888877765 34466777777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVPDI---VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD 600 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 600 (783)
+.+.|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+ ..|+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhh
Confidence 78888888888888887754 22222 3777777777788888888888888776 3454
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.037 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 360 NSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
..+...+.+.|++++|.++|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555555555555555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.012 Score=61.43 Aligned_cols=89 Identities=10% Similarity=-0.060 Sum_probs=51.2
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 039931 469 NGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMK 548 (783)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 548 (783)
..+...|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666666542 234445555555666666666666666666555332 4555555556666666666
Q ss_pred HHHHHHHHHHH
Q 039931 549 PAIDAFMDMYR 559 (783)
Q Consensus 549 ~A~~~~~~m~~ 559 (783)
+|...|++.++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.31 Score=49.41 Aligned_cols=286 Identities=10% Similarity=-0.031 Sum_probs=130.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
.-..+.+...+.+|+..+..+++.+ +.+..-|..-+..+.--|++++|.--.+.-++..+ ..+....-..+++...+.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 3345555666666777776666665 23344444444455555666666555555444322 111223333333333344
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHH-HHCCCCCChHHHHHHH-HHHHhcCCh
Q 039931 190 IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMI-QEEGLSPNVVVYNALL-NGYVKARDI 267 (783)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m-~~~g~~p~~~~~~~li-~~~~~~g~~ 267 (783)
..+|.+.++. ...| ...+ | ..-++.. +...-+|.-.+|-.|- ..+.-.|++
T Consensus 133 ~i~A~~~~~~---------~~~~-~~an----------a-------l~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-KAAN----------A-------LPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred HHHHHHHhhh---------hhhh-HHhh----------h-------hhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 4444433330 0011 0000 0 0011111 1111113333333332 345556777
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHH--HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 268 DQANMLYEEMRSRDIAPDAVTFNIIVS--GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
++|.+.--..++... ...+...++ ++.-.++.+.|...|.+.+..++. .. +.+..-.-.+.++
T Consensus 186 ~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~----------~sk~~~~~~k~le 250 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQ----------KSKSASMMPKKLE 250 (486)
T ss_pred hhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChh--hh----------hHHhHhhhHHHHH
Confidence 777777666655421 122333333 233456666666666666554322 11 1111111112222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 039931 346 DMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFG---LTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422 (783)
Q Consensus 346 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 422 (783)
.+.+. .+-..+.|++.+|.+.|.+.+... ..|+...|........+.|+.++|+.--+...+.
T Consensus 251 ~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-- 316 (486)
T KOG0550|consen 251 VKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-- 316 (486)
T ss_pred HHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--
Confidence 22221 223345667777777776665532 3344444555555566667777777666666554
Q ss_pred CCCHhhHH---HHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 423 PINKVAFT---VLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 423 ~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
|....- .-..++.-.++|++|.+-++...+.
T Consensus 317 --D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 --DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 322222 2223444556666666666665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.029 Score=61.32 Aligned_cols=63 Identities=16% Similarity=-0.036 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 565 DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 565 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+...|.++.-.....|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666666556667788888888888777 346777777777888888888888888877765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=52.66 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=39.7
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 039931 544 QGRMKPAIDAFMDMYRTGL-VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAA 621 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 621 (783)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|.+++++ .+ ..|+ ......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666655421 01233344455666666666666666655 21 1222 233333456666666666666
Q ss_pred HHHHH
Q 039931 622 MMLDE 626 (783)
Q Consensus 622 ~~~~~ 626 (783)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.4 Score=48.22 Aligned_cols=251 Identities=14% Similarity=0.090 Sum_probs=153.4
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPNNFA--YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP 549 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 549 (783)
.-.|+++.|.+-|+.|... |.... ...|.-.--+.|..+.|.++-+.....-.. -.-.+.+.+...|..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 3467778888888777752 33222 222222234677777777777776655333 34556677778888888888
Q ss_pred HHHHHHHHHHcC-CCCChh--HHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 039931 550 AIDAFMDMYRTG-LVPDIV--TYNTLIGGYC---KALDIVRADELVNKMYAGGLDPDITTY-NIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 550 A~~~~~~m~~~g-~~p~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~ 622 (783)
|+++.+.-.... +.+++. .-..|+.+-. -..+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 888887655332 334432 1222222211 12356667766666665 56776433 334578899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcc-HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcC
Q 039931 623 MLDELVSAGIVPNTVTYNTLMNGVCCDI-LDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEIS 700 (783)
Q Consensus 623 ~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 700 (783)
+++.+.+....|+. +...+++-..+. .++. +-.+++.. ++||+ .....+..+-...|++..|..-.+.+....
T Consensus 285 ilE~aWK~ePHP~i--a~lY~~ar~gdta~dRl-kRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 285 ILETAWKAEPHPDI--ALLYVRARSGDTALDRL-KRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHHhcCCChHH--HHHHHHhcCCCcHHHHH-HHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99999987666665 222232211111 1111 11223333 56765 556667777888999999998888888777
Q ss_pred CCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCc
Q 039931 701 FDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFL 735 (783)
Q Consensus 701 ~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~ 735 (783)
| -...|..|.++-..--++..+.+..+.+++.-
T Consensus 360 p--res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 P--RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred c--hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4 57888888887432226667788888777664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.67 Score=50.11 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=82.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS-GLLPNCTLYDITVAGLCWAGRLDEAME 342 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (783)
-|++++|.++|-+|-.++. .|..+.+.|++-...++++.--.. +-..-...++.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888887766522 244555666666555555431110 001113345666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 039931 343 FFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422 (783)
Q Consensus 343 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 422 (783)
.+..-.. -...+.++.+...+++-..+-+.+ +.+....-.+..++.+.|.-++|.+.+-+ .+.
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~ 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC
Confidence 6654332 122344555555555444433332 33445555666777777777776665522 222
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 423 PINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
+ .+.+..|...+++.+|.++-+.
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2334556666666666665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0027 Score=48.29 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIH 167 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~ 167 (783)
.+|..+...+.+.|++++|+..|.+.++.+ +.+...|..+..++.+.| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555555555555555555555443 233444444555555555 35555555554444
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.003 Score=47.33 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=30.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 111 LHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 111 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
...+.+.|++++|...|+++++.. +.+...+..+...+...|++++|..+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555554 334455555555555555555555555555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.035 Score=47.13 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNALIL 182 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 182 (783)
.-.+..++-..|+.++|+.+|++.+..|...+ ...+-.+.+.+...|++++|..++++.....|.+ +......+.-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 33456778889999999999999999986554 3456778889999999999999999998865431 2222222344
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (783)
++...|+.++|++.+-.... ++...|..-|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 67789999999998877653 44446666666664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0029 Score=47.92 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=34.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 150 LRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.+.|++++|++.|+++....| .+...+..+..+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666777777777666654 35555556667777777777777777766654
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.017 Score=53.37 Aligned_cols=102 Identities=25% Similarity=0.392 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHc-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 460 DAVAFSAYINGLSK-----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 460 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
+-.+|..+++.+.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- |... +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-H
Confidence 56666666666653 46667677777777777888888888888776654 2221 1110 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 580 (783)
.++-.-| -.+-+-|++++++|...|+-||..++..+++.+++.+
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1110011 1233456666666666666666666666666665444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.021 Score=52.72 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=76.9
Q ss_pred CCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 563 VPDIVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
..|..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |++- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 45667777777777643 5566666666777777777777777777766544 2221 2221
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----hhHHHHHHHHhhcCCC
Q 039931 638 TYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMP----EKTLLWGQKLSEISFD 702 (783)
Q Consensus 638 ~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~----~~A~~~~~~~~~~~~~ 702 (783)
......+ .-.+-+-|++++++|...|+.||..++..++..+.+.+.. ..-.-|+-+...++|=
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~ 174 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPW 174 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCC
Confidence 1111110 0034567888999999999999999999999988777642 3334456666666654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.014 Score=58.34 Aligned_cols=132 Identities=12% Similarity=0.091 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCChh
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQ----KGLL-PDNFTFNIIINGFCKQGRMKPAIDAFMDMYR----TGL-VPDIV 567 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~ 567 (783)
.|..|.+.|.-.|+++.|+...+.-.. -|-. .....+..|.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666667888888776554221 1211 1234567778888888999999888876542 221 12345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAG-----GLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+..+|...|.-..++++|+.++.+-+.- ...-....|.+|..+|...|.-++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888888765431 1223457788899999999998888887766653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.41 Score=45.49 Aligned_cols=130 Identities=9% Similarity=0.066 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI----- 503 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li----- 503 (783)
.+.++..+.-.|.+.-...++++..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344444444455555555555555555444455555555555555555555555555544332222222222221
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
..|.-.+++..|...+++....+.. |+..-|.-.-+..-.|+..+|++.++.|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233344555555555555544322 333333332233334556666666666555
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0061 Score=45.63 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+...+.+.|++++|...|+++++..| .+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999875 57889999999999999999999999999865
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.064 Score=52.36 Aligned_cols=129 Identities=11% Similarity=0.030 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCcchHhhhccc
Q 039931 156 GSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-GQTSYALGKCGA 234 (783)
Q Consensus 156 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 234 (783)
+....-++.-++.+| -|...|-.|...|...|+++.|..-|.+..+.. ++|...+..+..++... |....+ +
T Consensus 139 ~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta-----~ 211 (287)
T COG4235 139 EALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTA-----K 211 (287)
T ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccH-----H
Confidence 334444566666666 788899999999999999999999999998764 46677777777666543 333333 3
Q ss_pred hHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 039931 235 GRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVS 294 (783)
Q Consensus 235 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 294 (783)
+..+|++....... |+.+-.-|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 212 a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 212 ARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 48899999886543 67777778889999999999999999999863 44455555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.38 Score=51.40 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=110.6
Q ss_pred CCHHhHHHHHHHHHhcCCcchHhhhc------cchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHHH
Q 039931 207 ADFFAYNILINAYCIRGQTSYALGKC------GAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID--QANMLYEEMR 278 (783)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~ 278 (783)
+-.+.+.+-+--|...|.+++|.+.- ..-+.+-.+.. +.--++.-=++|.+..+.. +-+.-+++|+
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~AL------eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEAL------EALDFETARKAYIRVRDLRYLELISELEERK 627 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHH------hhhhhHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555566677788888885420 00011111111 1223344445555554432 3344456666
Q ss_pred hCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 279 SRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFA 358 (783)
Q Consensus 279 ~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 358 (783)
++|-.|+..... ..++-.|.+.+|-++|.+ +|.-..|+++|..|.-
T Consensus 628 ~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~----------------------~G~enRAlEmyTDlRM--------- 673 (1081)
T KOG1538|consen 628 KRGETPNDLLLA---DVFAYQGKFHEAAKLFKR----------------------SGHENRALEMYTDLRM--------- 673 (1081)
T ss_pred hcCCCchHHHHH---HHHHhhhhHHHHHHHHHH----------------------cCchhhHHHHHHHHHH---------
Confidence 777667665433 234445666666655433 4555555555555442
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------HHHcCCC---CCHhhH
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCK------MIEKGFP---INKVAF 429 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~------~~~~~~~---~~~~~~ 429 (783)
....+-|...|..++-..+.++-.+..- |..-=.+....+...|+.++|..+.-+ +.+.+.. .+..+.
T Consensus 674 -FD~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l 750 (1081)
T KOG1538|consen 674 -FDYAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPL 750 (1081)
T ss_pred -HHHHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHH
Confidence 1234455555655555544443322210 000111233445556666666554321 1111111 123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 430 TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
..+...+-+...+.-|-++|..|.+. ..+++.....+++++|+.+-+...+
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 44444445555566666666665432 3345556666777777666665554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.63 E-value=1 Score=46.41 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039931 52 RSCCIAAHIFAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMR 131 (783)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 131 (783)
...|.-+.+|.+.+.+..+..+|+........+. ..+. .....+.++++|.-.+ .+.-........
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~--f~lk-----------eEvl~grilnAffl~n-ld~Me~~l~~l~ 72 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSP--FLLK-----------EEVLGGRILNAFFLNN-LDLMEKQLMELR 72 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcch--HHHH-----------HHHHhhHHHHHHHHhh-HHHHHHHHHHHH
Confidence 3567777888888887778777776554332211 1110 1234566777776544 333333333333
Q ss_pred HCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhc--CCC------------CCHHHHHHHHHHHHhcCChhhHHH
Q 039931 132 EVGIMPSESAITILFKSL--LRVGDYGSVWKLFRDMIHL--GPR------------PSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 132 ~~g~~~~~~~~~~ll~~l--~~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
+.. | ...|-.|..++ -+.+.+..|.+.+...... +.. +|-..=+..++++...|++.+++.
T Consensus 73 ~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~ 149 (549)
T PF07079_consen 73 QQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRA 149 (549)
T ss_pred Hhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHH
Confidence 321 2 23344444443 4678888888887766544 221 122334566788889999999998
Q ss_pred HHHHHHhC----CCCCCHHhHHHHHHHHHh
Q 039931 196 LLHVMHKY----MCVADFFAYNILINAYCI 221 (783)
Q Consensus 196 ~~~~m~~~----g~~~~~~~~~~li~~~~~ 221 (783)
++++|... .+..++.+|+.++-++++
T Consensus 150 iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 150 ILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 88887643 345788888887777764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.4 Score=47.82 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH------------HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT------------FNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.|.+..|..|...-+..-.++.|...|-+... -+.... -.+=+.+| -|++++|.+++-.|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh
Confidence 47778888877776666666666666544321 111111 11111111 36677777666655543
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 204 MCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN----VVVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
. ..|..+-+.|++- ++++-+...|-..| ..+|+.+...+.....+++|.+.|..-..
T Consensus 764 D---------LAielr~klgDwf----------rV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 764 D---------LAIELRKKLGDWF----------RVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred h---------hhHHHHHhhhhHH----------HHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 1233333444432 23332222111111 23566666666666666666666654321
Q ss_pred CCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 280 RDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAF 359 (783)
Q Consensus 280 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 359 (783)
. ...+.++.+..++++-+.+-+.+ +.+....-.+..++...|.-++|.+.|-+-.. |
T Consensus 825 ------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p----- 881 (1189)
T KOG2041|consen 825 ------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P----- 881 (1189)
T ss_pred ------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----
Confidence 1 12334444444444433333332 22444455566667777777777666543321 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 039931 360 NSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~ 381 (783)
-..+..|...+++.+|.++-+.
T Consensus 882 kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 1233455555666666655544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=43.83 Aligned_cols=55 Identities=31% Similarity=0.316 Sum_probs=22.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 039931 365 AYSRAGLEENAFEAYKIMHQFGLTPS--SCTCSSLLVGLCKKGRLPEAWDLLCKMIE 419 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 419 (783)
++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443322 11223333344444444444444444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.52 Score=42.39 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 039931 528 LPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP---DITTY 604 (783)
Q Consensus 528 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~ 604 (783)
.|++..--.|..++...|+..+|...|++...--+--|......+.++....+++.+|...++++-+.. | ++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 455555556666666667777776666666643333456666666666666666777766666666532 2 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
-.+.+.|...|++.+|...|+..++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 34456666667777777777666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.54 Score=44.72 Aligned_cols=141 Identities=19% Similarity=0.109 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAY----- 467 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----- 467 (783)
..+.++..+...|.+.-....++++++...+.++.....|++.-.+.||.+.|...|+...+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344566666677777778888888888776777888888888888888888888888876654322333333333
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNI 536 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 536 (783)
...+.-.+++..|...+.++.... +.|+...|.-.-+..-.|+..+|++.++.|.+.. |...+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhhh
Confidence 234556677888888888877653 3344444544444445688888999998888863 44444343
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.32 Score=46.31 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGF--PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
..+...|++.+|.+.|+.+...-+ +--....-.++.++.+.|+++.|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555421 112223344455555566666666666555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.2 Score=45.90 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-HHHH
Q 039931 496 NFAYNSLIAGFCNRGKLNEALKLEREMRQKG-LLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTY-NTLI 573 (783)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li 573 (783)
..+|...++...+..-++.|..+|-+..+.+ ..+++..++++|..++ .|+..-|..+|+--+.. -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455666666666666777777887777776 4567777777776655 56677777777765554 3444433 3445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPD--ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.-+...++-+.|..+|+..+++ +..+ ...|..+|+--..-|++..+..+=+.|.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5556677777777777765542 2222 35677777777777777777777666665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0089 Score=45.18 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=24.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+.|++++|++.|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555554431 11344444455555555555555555555544
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.36 Score=45.96 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=30.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISP--SIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (783)
+...|++.+|.+.|+++....+.. -......++.++.+.|+++.|...++...+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777777777766642221 1233445566666677777777777666554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=45.08 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 112 HGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
..|.+.+++++|++++++++..+ +.+...|......+.+.|++++|.+.|++.++.+|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34555666666666666666654 34555555566666666666666666666665543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.03 Score=42.98 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=52.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 146 FKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 146 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
-..+.+.++++.|+++++.++..+| .+...+.....++...|++++|.+.|++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3568899999999999999999977 588889999999999999999999999999875
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.015 Score=39.32 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDR 713 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~ 713 (783)
+|..+...|...|++++|+++++++++..|+ |..+|..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 6778888999999999999999999999998 8888877764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.3 Score=43.58 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQ-----FGLTPSSCT 393 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 393 (783)
...++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|.+.|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555666777777777777777776444 667777777777777777777777776632 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.1 Score=40.32 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHhhHHHH
Q 039931 354 PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP-INKVAFTVL 432 (783)
Q Consensus 354 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 432 (783)
|++..-..|..+..+.|+..+|...|++...--+.-|......+.++....+++..|...++++.+.... -++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444445555556666666666666665554333334445555555555566666666666655554210 012223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 433 LDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
...+...|++.+|+.-|+..... .|+...-......+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 44555555555555555555543 223322222333344445444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.12 Score=51.04 Aligned_cols=92 Identities=14% Similarity=0.032 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI----VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD----ITTYN 605 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~ 605 (783)
|...+..+.+.|++++|...|+.+++. .|+. ..+.-+...|...|++++|...|+.+.+. .|+ ...+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHH
Confidence 333333334445555555555555543 2332 24444555555556666666666555542 122 23333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 606 IRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 606 ~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.++.++...|+.++|...|+++++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555666666666665554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.2 Score=43.56 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=24.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
+...|-..+.+++..++|++-.++-.. ++ +++-|..++..|.+.|+..+|..+...
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 444444444444444444443333221 11 234444444455555554444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.4 Score=43.90 Aligned_cols=187 Identities=10% Similarity=0.026 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCcHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSR----DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS---GLLPNCT 322 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 322 (783)
|...=+..++.+...|++.+++.++++|..+ ...-+..+|+.++-.+.+ ..|-++.+. ++-|+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd-- 196 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD-- 196 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH--
Confidence 4445566778889999999999999988764 344678888875554433 233333222 22222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHH-HHHHHH
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG--LEENAFEAYKIMHQFGLTPSSCT-CSSLLV 399 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-~~~li~ 399 (783)
|--++-.|.+.=. .++.-.-..+.|.......++....-.. +..--.++++.....-+.|+... ...+..
T Consensus 197 -yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~ 269 (549)
T PF07079_consen 197 -YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQ 269 (549)
T ss_pred -HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 2233333432211 1111111112233333333332222111 11112233333333334454322 233333
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 400 GLCKKGRLPEAWDLLCKMIEKGFP----INKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
.+.+ +.+++..+-+.+....+. -=..++..++....+.++...|...+.-+...
T Consensus 270 ~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 270 QFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3333 444444444443332111 02345677777777788888887777766554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=2.3 Score=43.13 Aligned_cols=253 Identities=17% Similarity=0.085 Sum_probs=139.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 368 RAGLEENAFEAYKIMHQFGLTPSSCT----CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
-.|+++.|.+-|+.|.. |..| ...|.-...+.|+.+.|.++-+...+.-.. -...+...+...|..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChH
Confidence 35666667666666664 2222 222222334567777777766666555322 3455666777777777777
Q ss_pred HHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 039931 444 GAQSLWNELNRRK-IFPDAVA--FSAYINGL---SKAGLVDEAYGVFLEMSRIGFVPNNFAY-NSLIAGFCNRGKLNEAL 516 (783)
Q Consensus 444 ~A~~~~~~~~~~~-~~p~~~~--~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~ 516 (783)
.|+++.+.-.... +.+++.- -..|+.+- .-.-+...|...-.+..+ +.||.+.- ..-..++.+.|++.++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 7777776654432 2223221 11111111 011234445544444444 34554432 22345677888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 517 KLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT-GLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 517 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+++.+-+..+.|+. +. +..+.+.|+. ++.-+++..+. .++| +..+...+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 888888877444433 22 2233445543 33222222210 1344 455666667777778888877776666665
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCH
Q 039931 595 GGLDPDITTYNIRMHGYCNI-RKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 595 ~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
..|....|..|.+.-... |+-.++...+.+.++..-.|+.
T Consensus 358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 467777777777665444 8888888877777765555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.6 Score=45.09 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKG---LLPDNFTFNIIINGFCK---QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGG 575 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 575 (783)
++-.|....+++..+++.+.+.... +.-+...--...-++.+ .|+.++|++++..++...-.++..+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334666677777777777666541 11122222233444555 67777777777765544445666666665555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhh--cc
Q 039931 576 YCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT---VTYNTLMNGVCC--DI 650 (783)
Q Consensus 576 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~--~~ 650 (783)
|-.. | .+.+. -|.. ..++|+..|.+.-+ +.||. +.+.+|+..... ..
T Consensus 227 yKD~---------~---~~s~~-~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 227 YKDL---------F---LESNF-TDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHH---------H---HHcCc-cchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccc
Confidence 4211 0 01110 1111 14555555554432 22332 122222221111 01
Q ss_pred HHHHHHHH----HHHHHcCC-C--CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 651 LDRAIIIA----AKLLKMAF-V--PNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 651 ~~~A~~~~----~~~~~~~~-~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
-.+..++. ....+.|. . .|-..+.+++.++.-.|++++|.++++++.++.|+
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 11111111 11222332 2 34455677888889999999999999999988754
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.84 E-value=3.4 Score=44.53 Aligned_cols=412 Identities=10% Similarity=0.029 Sum_probs=200.9
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhH-HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVT-FNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITV 328 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 328 (783)
+...|+++|.---...+.+.+..++..++.. -|.... |.-....=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665444445556666666666644 344433 333334445567777777777776653 334444555444
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 039931 329 AGLC-WAGRLDEAMEFFEDMFEK-GIS-PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLC--- 402 (783)
Q Consensus 329 ~~~~-~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--- 402 (783)
..++ ..|+.+.....|+...+. |.. .+...|...|.--...+++.....+|+..++.- ...|+.....|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 4333 345666666666666552 211 134456666666666777777777777776531 122222222221
Q ss_pred hc------CChhHHHHHHHHHHHc---CC-CCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 403 KK------GRLPEAWDLLCKMIEK---GF-PINKVAFTVLLDGYF-RIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGL 471 (783)
Q Consensus 403 ~~------g~~~~a~~~~~~~~~~---~~-~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 471 (783)
.. -..+++.++-...... .. .........-+.--. ..+..+++..+..+... .--..+
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~ 265 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVY 265 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHH
Confidence 11 1122332222222211 00 000111111111000 01111122211111111 011122
Q ss_pred HccCChHHHHHHHHHHHhCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 472 SKAGLVDEAYGVFLEMSRIG---F----VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~---~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
...-...+....|+.-.+.- + .++..+|..-++--.+.|+.+.+.-+|+...-- +..-...|--.+.-....
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESS 344 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHc
Confidence 22223333333344333321 1 234567777777778888888888888876532 111233444455555556
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH-
Q 039931 545 GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY-CKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAA- 621 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~- 621 (783)
|+.+-|..++....+--+ |+......+-..+ -..|++..|..+++...+. + |+. ..-..-+....+.|+.+.+.
T Consensus 345 ~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 888888877776665432 3332222222333 3467999999999998874 3 654 33334456667778888877
Q ss_pred --HHHHHHHHCCCCCCHHH--HHHH--HHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039931 622 --MMLDELVSAGIVPNTVT--YNTL--MNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG 684 (783)
Q Consensus 622 --~~~~~m~~~g~~p~~~~--~~~l--i~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 684 (783)
.++....+.-..+.... +.-. ....++++.+.|..++.++.+. ..++...|..+++-....+
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 44433332111111111 1111 1122346778888888888773 3345566777776554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.2 Score=49.54 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHHcC
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPD--NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD----IVTYNTLIGGYCKAL 580 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 580 (783)
.+.|++++|...|+.+.+..+... +..+--+...|...|++++|...|+.+.+. .|+ ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 334445555555554444322110 123333444455555555555555555432 121 223333344444555
Q ss_pred CHHHHHHHHHHHHH
Q 039931 581 DIVRADELVNKMYA 594 (783)
Q Consensus 581 ~~~~A~~~~~~m~~ 594 (783)
+.++|.++++++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.71 E-value=4.7 Score=45.19 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE--SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
....-+...++...++.|..+-..- +..++. ........-+.+.|++++|...|-+.+.. .+|. .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3556666777788888888776542 222221 12333455567889999999888777543 2222 24555
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
|....+..+-..+++.+.+.|. .+..--..|+..|.+.++.++- .+..+... .|.. ..-....+..+.+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL-------~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKL-------TEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHH-------HHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 6666666677777888888875 4555556788888888877654 22222111 1110 1123345555556
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
.+-.++|..+-..... +......++ -..+++++|.+.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6666666655544332 233333333 2456777777777654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.63 E-value=4.1 Score=43.96 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
....|...|..-..++++.....+|++.++.
T Consensus 150 S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 150 SDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 3345666666666777777777788777764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.61 E-value=3.1 Score=42.45 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYE 275 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~ 275 (783)
+|..+...-...|+.+-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 45666666677788887777665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.13 Score=46.06 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIH-----LGPRPSNYT 176 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 176 (783)
+...++..+...|++++|....+.++..+ +-+...|..++.+|.+.|+...|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45556666666777777777777766665 45666666777777777777777776666643 255555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.14 Score=45.41 Aligned_cols=94 Identities=6% Similarity=-0.142 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
.-....-+...|++++|..+|.-+...++ -+..-|..|...+-..+++++|+..|......++ .|+..+-....++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 33455566789999999999999888874 5667788899999999999999999998887764 556666778899999
Q ss_pred cCChhhHHHHHHHHHh
Q 039931 187 NGCIRIGESLLHVMHK 202 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~ 202 (783)
.|+.+.|+..|+....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999998876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.2 Score=47.90 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 107 LDALLHGYLRVEMS--AEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDM 165 (783)
Q Consensus 107 ~~~l~~~~~~~g~~--~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~ 165 (783)
++.--.+|.+-.+. -+-.--++++.++|-.|+.. .+...+.-+|+|.+|.++|.+-
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHc
Confidence 34444555554433 23334456677777656654 3344566677777777777553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.63 Score=40.43 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHhhccHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHH
Q 039931 634 PNTVTYNTLMNGVCCDILDRAIIIAAKLLKM-AFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIM 711 (783)
Q Consensus 634 p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 711 (783)
|....|..-...+-+|++++|.+.|+.+... +..| ....-..++.+|.+.|++++|+..+++.++++|....+-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3346677777777778999999999888763 2223 2245567888999999999999999999999988444556555
Q ss_pred HHHHhhh
Q 039931 712 DRAYHNI 718 (783)
Q Consensus 712 ~~~y~~~ 718 (783)
..+++..
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 6565543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.5 Score=48.15 Aligned_cols=84 Identities=14% Similarity=-0.009 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
+.+.+|++...+.++.. ++|.....-=..+|...|+++.|+..+++++++.|. |-.+-.-|+..-.+..+..+.-+++
T Consensus 271 ~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998843 345566666777899999999999999999999987 6655555554433334444444555
Q ss_pred HhcCCC
Q 039931 729 SEKSLF 734 (783)
Q Consensus 729 ~~~~~~ 734 (783)
+.+++.
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.3 Score=46.55 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 625 (783)
..+|.++-+..++.+ +-|......+..+....++++.|..+|++... +.||. .+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555555543 33555555555555566666777777776665 45543 445555555666667777776666
Q ss_pred HHHHCCCCCCH---HHHHHHHHHHhhccHHHHHHHHHH
Q 039931 626 ELVSAGIVPNT---VTYNTLMNGVCCDILDRAIIIAAK 660 (783)
Q Consensus 626 ~m~~~g~~p~~---~~~~~li~~~~~~~~~~A~~~~~~ 660 (783)
+.++ ..|.. ......++.||...+++|++++-+
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 6544 23332 222233334555556666666544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.7 Score=38.72 Aligned_cols=86 Identities=12% Similarity=-0.038 Sum_probs=45.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRAD 586 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 586 (783)
...|++++|..+|.-+...++- +..-|..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3556666666666655554333 44445555555555566666666655544332 123333444455555556666666
Q ss_pred HHHHHHHH
Q 039931 587 ELVNKMYA 594 (783)
Q Consensus 587 ~~~~~m~~ 594 (783)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.26 Score=51.34 Aligned_cols=68 Identities=6% Similarity=-0.170 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE---SAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
.|.++..++.+..+|.+.|++++|+..|++.++.+. .+. .+|+.+..+|...|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355678999999999999999999999999999862 223 45999999999999999999999999885
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.031 Score=43.60 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 211 AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
+++.+...|...|++++|+..++++.++.+..... .|+ ..+++.+...|...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555666666666655555555553333211 122 56888899999999999999999988754
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.25 Score=51.51 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN--YTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+.+...|+.+..+|.+.|++++|+..|++.++.+|.... .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999998764332 46999999999999999999999999875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.087 Score=41.01 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAG--GLD---PD-ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+|+.+...|...|++++|++.+++..+. ... |+ ..+++.+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444431 011 11 2344555555555555555555555543
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.43 Score=40.97 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMH 609 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 609 (783)
|..++..+|.++++.|+++....+++..- |+.++... ..+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777776665543 22222110 0000 1112356788888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 039931 610 GYCNIRKMNQAAMMLDELVS-AGIVPNTVTYNTLMNG 645 (783)
Q Consensus 610 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~ 645 (783)
+|+..|++..|+++++...+ .++.-+..+|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999888874 7777777788887764
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.048 Score=45.50 Aligned_cols=49 Identities=24% Similarity=0.142 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 039931 649 DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
+.++.|++.|.+.+. +-| +...||.-..++.-.|+.++|+.-+++++++
T Consensus 57 g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 57 GDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred cchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 444555555544444 222 2344444444555555555555555555443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.39 Score=41.25 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHH
Q 039931 527 LLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT-GLVPDIVTYNTLIGGY 576 (783)
Q Consensus 527 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~ 576 (783)
..|+..+..+++.+|+..|++..|+++.+...+. +++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4555666666666666666666666655555432 3444455555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.85 Score=47.78 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhc---C------CHHHHHHHHHHHHHCCCCCCH-H--HHHHHHHHH
Q 039931 581 DIVRADELVNKMYA-GGLDPDI-TTYNIRMHGYCNI---R------KMNQAAMMLDELVSAGIVPNT-V--TYNTLMNGV 646 (783)
Q Consensus 581 ~~~~A~~~~~~m~~-~g~~p~~-~~~~~li~~~~~~---g------~~~~A~~~~~~m~~~g~~p~~-~--~~~~li~~~ 646 (783)
..+.|..+|.+... ..+.|+. ..|..+..++... | ...+|.++-++..+. .|+. . +...++.++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 35667778888772 2355654 4555555544332 1 233455555555542 2222 2 222222232
Q ss_pred hhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCH-HHHHHHHHHHhh
Q 039931 647 CCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDE-TSYKIMDRAYHN 717 (783)
Q Consensus 647 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~-~~~~~l~~~y~~ 717 (783)
. +.++.|..+|++... +.||. .+|....-.+.-.|+.++|.+.+++++++.|-.-. +....-++.|+-
T Consensus 351 ~-~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~ 420 (458)
T PRK11906 351 S-GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP 420 (458)
T ss_pred h-cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC
Confidence 2 447777777777776 45655 44444444456677777777777777777765222 233334445653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.60 E-value=5.5 Score=41.20 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=44.6
Q ss_pred HHHccCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 039931 295 GHCKYGGMEDGDRLLRDLSVSG---LLPNCTLYDITVAGLCW---AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR 368 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 368 (783)
+|....+++...++.+.+.... +.....+--...-++.+ .|+.++|.+++..+......++..+|..+.+.|-+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 4555555555555555554431 11111111122223344 66777777777665554455566666666655532
Q ss_pred c---------CCHHHHHHHHHHHHh
Q 039931 369 A---------GLEENAFEAYKIMHQ 384 (783)
Q Consensus 369 ~---------g~~~~A~~~~~~m~~ 384 (783)
. ...++|++.|.+.-+
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHc
Confidence 1 124556666655444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.48 E-value=9.9 Score=42.22 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=36.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKM 617 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 617 (783)
+.-+...|+..+|.++-.+.. -||...|.--+.+++..+++++-+++-+.+.. +.-|.-.+.+|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccH
Confidence 334444455555554444332 24445555455555555555544444333221 22333444455555555
Q ss_pred HHHHHHHHH
Q 039931 618 NQAAMMLDE 626 (783)
Q Consensus 618 ~~A~~~~~~ 626 (783)
++|.+++-+
T Consensus 761 ~EA~KYipr 769 (829)
T KOG2280|consen 761 DEAKKYIPR 769 (829)
T ss_pred HHHhhhhhc
Confidence 555555444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.54 Score=47.91 Aligned_cols=126 Identities=9% Similarity=-0.024 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 039931 111 LHGYLRVEMSAEVMEILYRMREV-----GIMP---------SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT 176 (783)
Q Consensus 111 ~~~~~~~g~~~~A~~~~~~~~~~-----g~~~---------~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 176 (783)
-+.|.+.|++..|..-|+++... ++.+ -..+++.|.-.+.+.+++..|++.-+.++..++ +|+-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhH
Confidence 34788899999999988875443 1111 123466677888999999999999999999876 78888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
..--.+++...|+++.|+..|+++++.. +.|-.+-+.|+..--+..+..+. .+++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~k------ekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEK------EKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhh
Confidence 8888999999999999999999999874 33444444554444333333222 1455555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.24 E-value=6.8 Score=39.40 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCcchHhhhccchHHHHHH-HHHCCCCCCh-----HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCC
Q 039931 212 YNILINAYCIRGQTSYALGKCGAGRMIFDM-IQEEGLSPNV-----VVYNALLNGYVKARDID---QANMLYEEMRSRDI 282 (783)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~a~~~~~~-m~~~g~~p~~-----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~ 282 (783)
|+.-...+.+..++++|..++++|.++++. -......|+. .+...++.+|...+..+ +|.++.+.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 444344443333888888777777777765 2222233443 45666777887776654 56666666654422
Q ss_pred CCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 039931 283 APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 283 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 315 (783)
. .+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2 2445555566666678888888888888775
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.5 Score=40.46 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (783)
-...+...|++.+|...|.......+. +...--.+..+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334456778888888888888777653 3445566778888888888888888877543211112222233444555444
Q ss_pred cchHhhhccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHccCC
Q 039931 225 TSYALGKCGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQANMLYEEMRSR--DIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 225 ~~~A~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~ 301 (783)
..+. ..+-.+.-. .| |...-..+...+...|+.++|++.+-.+.++ |.. |...-..++..+.-.|.
T Consensus 219 ~~~~-------~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEI-------QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCH-------HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 4433 223333322 24 6677777888888888888888877666654 333 56667777777777775
Q ss_pred hhHH
Q 039931 302 MEDG 305 (783)
Q Consensus 302 ~~~A 305 (783)
.+.+
T Consensus 288 ~Dp~ 291 (304)
T COG3118 288 ADPL 291 (304)
T ss_pred CCHH
Confidence 4443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.16 E-value=4.6 Score=44.01 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHc--CC-CCChhHHHHHHHHHHHcCCHHHH
Q 039931 510 GKLNEALKLEREMRQKGLLPDNFTFNII-INGFCKQGRMKPAIDAFMDMYRT--GL-VPDIVTYNTLIGGYCKALDIVRA 585 (783)
Q Consensus 510 g~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~~~~~li~~~~~~g~~~~A 585 (783)
...+.|.++++.+.++ -|+...|... ...+...|++++|++.|++.... .. +.....+--+...+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455666666666655 3444443322 23344566666666666654421 00 01122333444445555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHH
Q 039931 586 DELVNKMYAGGLDPDITTYNIRM-HGYCNIRKM-------NQAAMMLDEL 627 (783)
Q Consensus 586 ~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m 627 (783)
.+.|..+.+.. ..+..+|..+. .++...|+. ++|.++|.+.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 66666666532 22333333332 333344544 5555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.03 E-value=3.4 Score=35.11 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=64.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT---FNIIINGFCKQGRMKP 549 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~ 549 (783)
-.|.+++..++..+...+ .+..-||.+|--....-+-+-..+.++.+-+- -|... ...++.+|++.|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 356667777777766653 34445555554433333333333333333221 12111 1122333333222
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 550 AIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 550 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+.......++...+.|+-+.-.++...+.+. -.+++.....+..+|.+.|+..++.+++.+.-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2333444555566667777777777666542 256666666777777777777777777777666
Q ss_pred CCC
Q 039931 630 AGI 632 (783)
Q Consensus 630 ~g~ 632 (783)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.95 E-value=3.6 Score=36.24 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=6.6
Q ss_pred HHHHhcCCHHHHHHHHH
Q 039931 609 HGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~ 625 (783)
..|.+.+.++++.-++.
T Consensus 77 ~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 77 KLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHHcCcHHHHHHHHH
Confidence 33333333333333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.17 Score=34.05 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITIL 145 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 145 (783)
++..+..+|.+.|++++|.++|+++++.. +.+...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45555666666666666666666666554 3444444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.84 E-value=16 Score=42.97 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 039931 322 TLYDITVAGLCWAG--RLDEAMEFFEDMFE 349 (783)
Q Consensus 322 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 349 (783)
.....+|..|.+.+ .+++|++...+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33445566666665 56666665555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.81 E-value=4.9 Score=42.45 Aligned_cols=61 Identities=7% Similarity=-0.027 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYAGG-LDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
.+-..|..++.+.|+.+||++.+.+|.+.. ...+......|+.++...+.+.++..++.+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333456666667888888888888887632 1112345667788888888888888887775
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.72 E-value=7.7 Score=38.19 Aligned_cols=121 Identities=18% Similarity=0.075 Sum_probs=60.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
....|++.+|..+|+.......+ +...--.++..|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44556666666666666654333 34445556666666666666666666654332111112222223334444444444
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
..+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333322 22455555556666666666666665554444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.62 E-value=16 Score=43.00 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=9.1
Q ss_pred HHHHccCChHHHHHHHHHH
Q 039931 469 NGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m 487 (783)
.+|..+|++.+|+.+..++
T Consensus 973 ~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHhccHHHHHHHHHhh
Confidence 3444445555555544444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.60 E-value=8.9 Score=38.55 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHH
Q 039931 210 FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTF 289 (783)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 289 (783)
.+...++.+|...+..+.. ..+.++++.+...... .+..+-.-+..+.+.++.+++.+.+.+|... +.-....+
T Consensus 85 ~iL~~La~~~l~~~~~~~~----~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~ 158 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESV----EKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHcCCChHHH----HHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchH
Confidence 4667778888777776654 3456777777544322 2455556667777789999999999999986 22133445
Q ss_pred HHHHHHH---HccCChhHHHHHHHHHHhCCCCC
Q 039931 290 NIIVSGH---CKYGGMEDGDRLLRDLSVSGLLP 319 (783)
Q Consensus 290 ~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~ 319 (783)
..++..+ .. .....+...+..+....+.|
T Consensus 159 ~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 159 DSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 5444443 33 23344555555555443333
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=7.4 Score=37.55 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=36.1
Q ss_pred HhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGF--PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
.+.|++++|.+.|+.+....+ +-...+.-.++-++.+.++++.|+..+++..+..+...-..|-..|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 455666666666666654421 11233344445555666666666666666655433323333444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.50 E-value=11 Score=39.24 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG-LVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTY-NIR 607 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l 607 (783)
-...|...++.-.+..-++.|..+|.++.+.| +.+++..+++++..++ .|+...|.++|+--.. ..||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 45567778888888888889999999988887 6678888888888775 5688888888887665 25666554 445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAGIVPN--TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHF 680 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 680 (783)
+.-+...++-+.|..+|+...++ +..+ ...|..+|+.-.. |.+..+..+-+++.+ ..|-..+-....+.|
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 66777888888888888865532 2222 2456666654333 667667766666666 445443333333333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=7.4 Score=37.24 Aligned_cols=62 Identities=18% Similarity=0.059 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 428 AFTVLLDGYFRIGDLIGAQSLWNELNRR-KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
.+......+...+++..+...+...... ........+......+...+....+.+.+.....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3344444444444444444444444321 1111233333333444444444444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.46 E-value=5.3 Score=43.54 Aligned_cols=47 Identities=26% Similarity=0.262 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSI-IAAYSRAGLEENAFEAYKIMH 383 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 383 (783)
...+.|.++++.+..+ -|+...|... .+.+...|++++|++.|+...
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4566667777766664 3344433332 344555666777776666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.42 E-value=3.7 Score=36.17 Aligned_cols=40 Identities=20% Similarity=0.109 Sum_probs=16.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR 438 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 438 (783)
+..+...+.......+++.+...+. .+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333333444444444444444332 233444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.39 E-value=4.4 Score=34.42 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 562 (783)
...++...+.|+-+.-.++..++.+. -.+++...-.+..+|.+.|+..++.+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555556666666666555542 244555555666666666666666666666665553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.9 Score=46.24 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=63.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC 542 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 542 (783)
..+.++..+.+.|..+.|+.+-.+-.. -.....+.|+++.|.++.++ .++...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 355555556666666666554432211 12334456666666554322 225556666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 622 (783)
+.|+++-|.+.|.+... |..|+-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666655321 34445555556666555555555554331 3333444444455555555
Q ss_pred HHH
Q 039931 623 MLD 625 (783)
Q Consensus 623 ~~~ 625 (783)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.3 Score=47.42 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
-.+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.|.++.++ ..+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 35556666666666666665533211 112333445555555554322 124445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555443 4444455555555555555544444443 12333333444444444444
Q ss_pred HH
Q 039931 413 LL 414 (783)
Q Consensus 413 ~~ 414 (783)
++
T Consensus 424 lL 425 (443)
T PF04053_consen 424 LL 425 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.3 Score=42.62 Aligned_cols=104 Identities=12% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 563 VPDIVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
.-|..+|.+.+..+... +.++-....++.|.+.|+.-|..+|+.|++.+=+.. +.|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34666777777666532 445556666777777777777777777776654432 122221
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039931 638 TYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG 684 (783)
Q Consensus 638 ~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 684 (783)
.-...++. -.+-+=+++++++|...|+.||..+-..|+.++.+.|
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 11111110 0122335666777777777777777777777766655
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=15 Score=39.04 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMH 609 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 609 (783)
|....-+++..+...-+..-...+..+|+..| -+...|..++..|... ..+.-..+|+++++.. .-|.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 44555667777777666777777777777754 4667777788887776 5567777788777742 223444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhhccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh
Q 039931 610 GYCNIRKMNQAAMMLDELVSAGIVPN------TVTYNTLMNGVCCDILDRAIIIAAKLLK-MAFVPNVVTTNVLLSHFCK 682 (783)
Q Consensus 610 ~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~ 682 (783)
.|-+ ++.+.+..+|.+.... +.|. ...|.-++. +..++.+.-+.+..++.. .|..--.+.+-.+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~-~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPE-LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHH-hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 7778888888777643 2231 134555554 223556666666666554 3333334555566667788
Q ss_pred cCChhhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 039931 683 QGMPEKTLLWGQKLSEISFDFDETSYKIMDR 713 (783)
Q Consensus 683 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~ 713 (783)
..++++|++++..+++.+.+ |.-+-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 88999999999988888766 6665444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.8 Score=35.44 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=64.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHH---HHHHHHHHHH
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL-GPRPSNY---TFNALILGFC 185 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~~~~~~~---~~~~l~~~~~ 185 (783)
-.-+....|+.+.|++.|.+.+..- +....+||.-..++.-+|+.++|++-+++.++. |+. .-. +|.--...|-
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 3345677788888888888877653 455677888888888888888888888887764 332 222 2333344466
Q ss_pred hcCChhhHHHHHHHHHhCC
Q 039931 186 RNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g 204 (783)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888877766
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=9.7 Score=36.39 Aligned_cols=187 Identities=21% Similarity=0.106 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 039931 370 GLEENAFEAYKIMHQFGLT-PSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK-GFPINKVAFTVLLDGYFRIGDLIGAQS 447 (783)
Q Consensus 370 g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 447 (783)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12455566666667777777777776666542 233355566666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 448 LWNELNRRKIFPDAVAFSAYIN-GLSKAGLVDEAYGVFLEMSRIGFVP----NNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+.........+ ......... .+...|+++.|...+.+.... .| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777776654332 111222222 566667777777777666442 22 1222222222234444555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
...........+..+...+...++.+.|...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 4431111233344444444444444444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.44 E-value=11 Score=36.44 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=41.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGIS--PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLC 402 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 402 (783)
-.+.|++++|...|+.+..+-+- -...+.-.++.++.+.++++.|+...++....-......-|..-|.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34567777777777777764221 1234445556667777777777777777666533322333444444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.36 E-value=6.4 Score=39.60 Aligned_cols=162 Identities=9% Similarity=-0.000 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCC--CHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRT-GLVPD---IVTYNTLIGGYCKALDIVRADELVNKMYAGG---LDP--DITTY 604 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p--~~~~~ 604 (783)
|-.+..++-+.-++.+++.+-+.-... |..|. -....++..++.-.+.++++++.|+...+-- -.| ...+|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 444444554445555555554443321 22221 1223345566666777888888887776521 112 23567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH-----Hh-hccHHHHHHHHHHHH----HcCCCCCH
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVS----AGIVPNTVTYNTLMNG-----VC-CDILDRAIIIAAKLL----KMAFVPNV 670 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~-----~~-~~~~~~A~~~~~~~~----~~~~~p~~ 670 (783)
..|...|.+..++++|.-+..+..+ .++.-=..-|..++-. +- .|.+..|.+..++.. .+| |.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G---dr 242 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG---DR 242 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC---Ch
Confidence 7888888888888888777666543 2322222334443322 11 266777777776643 455 44
Q ss_pred HHH----HHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 671 VTT----NVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 671 ~~~----~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
.++ ..+.+.|...|+.|.|+.-|+.+..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 343 4566778899999999887777654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.31 Score=30.38 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 671 VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 671 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
..|..+...+.+.|++++|++.++++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35677788899999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=2.7 Score=41.68 Aligned_cols=157 Identities=9% Similarity=-0.023 Sum_probs=104.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHhcCChh
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL-GPRPS--NYTFNALILGFCRNGCIR 191 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~ 191 (783)
--+|.+.+|-..++++++. +|-|..+++..=.++.-.|+...-...+++++.. ++... ++.-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888889998875 4678888888888999999999999999988765 22222 233333444556889999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 039931 192 IGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQAN 271 (783)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 271 (783)
+|.+.-++..+.+ +-|.....++.+.+-..|+.+++.++.......++. +--.-..-|=...-.+...+.++.|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999888766 577888899999999999998885432211111110 00000111222333455667888888
Q ss_pred HHHHHH
Q 039931 272 MLYEEM 277 (783)
Q Consensus 272 ~~~~~m 277 (783)
++|+.-
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 888653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=9.6 Score=35.54 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=86.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH--
Q 039931 98 HLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNY-- 175 (783)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-- 175 (783)
...|.-+.+||-|---+...|+++.|.+.|+...+.+..-+-...|.-|. +---|++.-|.+-|-..-+.++ .|++
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~-~DPfR~ 170 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDP-NDPFRS 170 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCC-CChHHH
Confidence 34455567888888888888888888888888887764333333333332 2245778888777777766655 2332
Q ss_pred HHHHHHHHHHhcCChhhHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC------
Q 039931 176 TFNALILGFCRNGCIRIGES-LLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS------ 248 (783)
Q Consensus 176 ~~~~l~~~~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~------ 248 (783)
.|-.+.. ..-++.+|.. +.++..+ .|..-|...|-.|- .|++.+ +.+++.+....-.
T Consensus 171 LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~--------e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 171 LWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE--------ETLMERLKADATDNTSLAE 234 (297)
T ss_pred HHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH--------HHHHHHHHhhccchHHHHH
Confidence 3433332 2234445543 3444432 23333333332222 122221 1233333221100
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 249 PNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
.=..||--|...+...|+.++|..+|+-....
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01235666666677777777777777776654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.14 E-value=15 Score=37.21 Aligned_cols=130 Identities=11% Similarity=0.127 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cC----ChhHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCC-
Q 039931 267 IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK--YG----GMEDGDRLLRDLSVSGLL---PNCTLYDITVAGLCWAGR- 336 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~- 336 (783)
+++.+.+++.|.+.|..-+..+|-+..-.... .. ....|..+++.|.+..+- ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888777666654333222 11 244566777777665432 333344444433 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 337 ---LDEAMEFFEDMFEKGISPSIF-AFNSIIAAYSRAGL---EENAFEAYKIMHQFGLTPSSCTCSSLL 398 (783)
Q Consensus 337 ---~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li 398 (783)
.+.+..+|+.+.+.|+..+-. -+.+-+-+++.... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 344555566666555543222 22222222221111 234555666666666555555554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.12 E-value=5.1 Score=40.43 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=89.6
Q ss_pred cchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh--c----CChhHHHHHHHHHHhCCC---CCCHhHHHHHHHH
Q 039931 225 TSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK--A----RDIDQANMLYEEMRSRDI---APDAVTFNIIVSG 295 (783)
Q Consensus 225 ~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~ 295 (783)
.++++ ++...+++.|.+.|+..+..+|-+....... . .....|..+|+.|++.-. .++...+..++..
T Consensus 74 p~~~~---~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 74 PEEAF---KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHH---HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 66654 4557889999999999888777664333332 2 235689999999998732 3566677777654
Q ss_pred HHccCC----hhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 296 HCKYGG----MEDGDRLLRDLSVSGLLPNCT--LYDITVAGLCWAGR--LDEAMEFFEDMFEKGISPSIFAFNSIIAA 365 (783)
Q Consensus 296 ~~~~g~----~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 365 (783)
..++ .+.++..|+.+.+.|+..+.. ..+.++...-.... ...+.++++.+.+.|+++....|..+.-.
T Consensus 151 --~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 151 --TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred --ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3333 356788888888878765433 33333332222111 55788999999999999887777665433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.7 Score=42.00 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHH
Q 039931 249 PNVVVYNALLNGYVKA-----RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTL 323 (783)
Q Consensus 249 p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 323 (783)
.|..+|-+.+..+... +.++-....++.|.+-|+.-|..+|+.||+.+-+. .+.|....
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg----------------kfiP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG----------------KFIPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc----------------ccccHHHH
Confidence 4666777777666533 55666777788888888888888888888765331 12222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLE 372 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 372 (783)
-..+++ | -.+-+-++.++++|...|+.||-.+-..|++++.+.+-.
T Consensus 129 Q~~F~H-Y--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLH-Y--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhh-C--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 2 123345677888888888888888888888887776653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.06 E-value=11 Score=35.81 Aligned_cols=205 Identities=17% Similarity=0.114 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA 256 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 256 (783)
|.-...+|-...++++|...+.+..+. ...|...|. |-..++++-.+..+|.+. +--+..|+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh--------------AAKayEqaamLake~~kl--sEvvdl~eK 96 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH--------------AAKAYEQAAMLAKELSKL--SEVVDLYEK 96 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH--------------HHHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 333445566677777777766666531 111211111 111122233444554432 112345677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCCCCHh--HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSR--DIAPDAV--TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~--t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
-..+|..+|.++.|-..+++.-+. ++.|+.. .|.--+...-..++...|.+++.+ .-..+.
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk---------------~sr~lV 161 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK---------------CSRVLV 161 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH---------------hhhHhh
Confidence 777888888888777777665331 3444432 233333333344444444444333 334566
Q ss_pred hcCCHHHHHHHHHHHHHCC----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhc
Q 039931 333 WAGRLDEAMEFFEDMFEKG----ISPSI-FAFNSIIAAYSRAGLEENAFEAYKIMHQFG---LTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~ 404 (783)
+..++++|-..|.+-.... --|+. ..|-..|-.|.-..++..|...++.--+.+ -.-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 6666666666555433210 01111 224444555555667777777776643322 122344555555554 34
Q ss_pred CChhHHHHHH
Q 039931 405 GRLPEAWDLL 414 (783)
Q Consensus 405 g~~~~a~~~~ 414 (783)
|+.+++..+.
T Consensus 241 gD~E~~~kvl 250 (308)
T KOG1585|consen 241 GDIEEIKKVL 250 (308)
T ss_pred CCHHHHHHHH
Confidence 5555544433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.34 Score=30.27 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 671 VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 671 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.+|..+...|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.15 Score=32.04 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 693 GQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 693 ~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
++++++++|+ ++.+|+.|+.+|..
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLN 25 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 4566666766 66777777776654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.74 E-value=4.2 Score=35.44 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIM--PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
..+-.-.....+.|++++|.+.|+.+..+-.. -...+--.|+.++.+.|+++.|+..+++.++..|..-...|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 34444455667789999999999998877321 1233455688889999999999999999999877655556666666
Q ss_pred HHHhcC
Q 039931 183 GFCRNG 188 (783)
Q Consensus 183 ~~~~~g 188 (783)
+++...
T Consensus 91 gL~~~~ 96 (142)
T PF13512_consen 91 GLSYYE 96 (142)
T ss_pred HHHHHH
Confidence 665433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.47 E-value=4.8 Score=40.01 Aligned_cols=155 Identities=12% Similarity=0.009 Sum_probs=103.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCC
Q 039931 436 YFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA----YNSLIAGFCNRGK 511 (783)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~ 511 (783)
..-.|+..+|...++++.+.-+ .|..+++.--.++.-+|+.+.-...++++... ..||... -.....++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3457888888888888888644 38888888888888899988888888887654 2344322 2333445567899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHHcCCHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP----DIVTYNTLIGGYCKALDIVRADE 587 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~ 587 (783)
+++|.+.-++..+.+.. |.-.-.+....+-..|+..++.++..+-... .+. -..-|-...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999888888776543 6666677777788888999988876653321 110 01112222233445678888888
Q ss_pred HHHHHHH
Q 039931 588 LVNKMYA 594 (783)
Q Consensus 588 ~~~~m~~ 594 (783)
+|++=.-
T Consensus 269 IyD~ei~ 275 (491)
T KOG2610|consen 269 IYDREIW 275 (491)
T ss_pred HHHHHHH
Confidence 8876443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.22 E-value=3.4 Score=40.14 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=57.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN---NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLL-P-DNFTFNII 537 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p-~~~~~~~l 537 (783)
.|+.-+. +.+.|++..|...|...++.. +-+ ...+-.|...+...|++++|..+|..+.+.-+. | -+..+--|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4555443 345566777777777776652 111 223455667777777777777777776665221 1 23455566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.....+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66667777777777777777664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.18 Score=32.20 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcC
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEIS 700 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 700 (783)
+|..|...|.+.|++++|++++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788889999999999999999966543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=3 Score=40.48 Aligned_cols=97 Identities=19% Similarity=0.101 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIM--PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR--PSNYTFNALI 181 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 181 (783)
.|+.-+.. .+.|++.+|...|...++.... -...++.-|...+...|++++|...|..+.+..|. .-+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57776655 4677799999999999987521 12345666999999999999999999999987543 2345677888
Q ss_pred HHHHhcCChhhHHHHHHHHHhC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8899999999999999999876
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.08 E-value=12 Score=33.96 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 039931 342 EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 342 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 374 (783)
+++..+.+.++.|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444455556666666666666666665443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.96 E-value=16 Score=38.82 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=27.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+...+-+.|+.++|.+.|.+|.+..-. .+......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444555556666655555543211 11223344555555555555555555553
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=32 Score=38.55 Aligned_cols=213 Identities=14% Similarity=0.036 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--HcCCHHHHHH
Q 039931 511 KLNEALKLEREMRQKGLLPDNFTFNIIINGFCK-QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYC--KALDIVRADE 587 (783)
Q Consensus 511 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~ 587 (783)
+.+.|..++....+.|.. +....-..+..... ..+...|.++|....+.|. +....+.++.-... -..+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 344555555555555432 33222211111111 1234566666666665552 22222222111111 2335666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hh---ccHHHHHHHHH
Q 039931 588 LVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV-----CC---DILDRAIIIAA 659 (783)
Q Consensus 588 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~---~~~~~A~~~~~ 659 (783)
++.+..+.| .|...--...+..+.. +.++.+.-.+..+.+.|..--...-..+.... .. ...+.+..++.
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 666666655 2322222222233333 55566655555555544321111111111110 01 24556666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh---hhHHHHHHHHHHhcC
Q 039931 660 KLLKMAFVPNVVTTNVLLSHFCKQ----GMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN---IQENAEFFQETSEKS 732 (783)
Q Consensus 660 ~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~---~~~~~~~~~~~~~~~ 732 (783)
+....| +......+-+.|..- .+.+.|...+..+.+.+ ....-.|++.+-. +.. ..++++.+.++
T Consensus 464 ~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~ 535 (552)
T KOG1550|consen 464 RAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQA 535 (552)
T ss_pred HHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHH
Confidence 655544 333333333333222 25777777777776544 4455555655422 124 66666666665
Q ss_pred CCc
Q 039931 733 LFL 735 (783)
Q Consensus 733 ~~~ 735 (783)
...
T Consensus 536 ~~~ 538 (552)
T KOG1550|consen 536 SEE 538 (552)
T ss_pred Hhc
Confidence 543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.18 E-value=38 Score=38.45 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 039931 237 MIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYE 275 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 275 (783)
.+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+
T Consensus 418 ~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 418 SYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 345555555554 44444555555655555555444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.91 E-value=37 Score=37.97 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 039931 565 DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS-AGIVPNTVTYNTLM 643 (783)
Q Consensus 565 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 643 (783)
...+.+--+.-+...|+..+|.++-.+.. -||...|..-+.++...++|++-.++-+++.. -|..| .+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~P-------FV 751 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLP-------FV 751 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchh-------HH
Confidence 33445555566677899999999888776 58999999999999999999988877766542 23333 33
Q ss_pred HHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 039931 644 NGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQ 694 (783)
Q Consensus 644 ~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 694 (783)
.+|.+ |+.+||.+++-+.-. .. -.+.+|.+.|++.+|.+..-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 33333 889999998876433 11 44557888999999987553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.64 E-value=18 Score=33.87 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 039931 119 MSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLH 198 (783)
Q Consensus 119 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 198 (783)
...-|+--|.+.+... +.-+.++|-|.--+...|+++.|.+.|+...+.+|.-+-...|--|. +---|++..|.+-|-
T Consensus 80 L~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~ 157 (297)
T COG4785 80 LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence 3444555555555543 23356677777777888888888888888887776443333333333 334577777777666
Q ss_pred HHHhC
Q 039931 199 VMHKY 203 (783)
Q Consensus 199 ~m~~~ 203 (783)
..-+.
T Consensus 158 ~fYQ~ 162 (297)
T COG4785 158 AFYQD 162 (297)
T ss_pred HHHhc
Confidence 55543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.6 Score=39.86 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAGIVPNT------VTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSH 679 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~ 679 (783)
.+-+.+.|++++|..-|.+.++. -|.. +.|..-..++.+ +..+.|+.-..+.++ +.|+. .....-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 35578889999999988888863 2322 112111112222 566777777777777 33532 122222336
Q ss_pred HHhcCChhhHHHHHHHHhhcCCC
Q 039931 680 FCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
|.+...+++|+.-|+++.+++|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 77778888888888888888876
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.48 E-value=40 Score=37.75 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 331 LCWAGRLDEAMEFFEDMFE-------KGISPSIFAFNSIIAAYSRAG-----LEENAFEAYKIMHQFGLTPSSCTCSSLL 398 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li 398 (783)
+....+.+.|..+|+...+ .| +....+.+...|.+.. +.+.|+.+|.+.-+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3345566666666666554 33 2334555556665532 55667777777777663 3443332222
Q ss_pred HHHHh-cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 039931 399 VGLCK-KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGY--FRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG 475 (783)
Q Consensus 399 ~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 475 (783)
..... ..+...|.++|......|.. ....+.+++... .-..+...|...+++..++|. |....-...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-c
Confidence 22111 23456777777777777644 111111111111 122356677777777766652 221212222223333 5
Q ss_pred ChHHHHHHHHHHHhCC
Q 039931 476 LVDEAYGVFLEMSRIG 491 (783)
Q Consensus 476 ~~~~A~~~~~~m~~~~ 491 (783)
..+.+.-.+..+...|
T Consensus 412 ~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 412 RYDTALALYLYLAELG 427 (552)
T ss_pred cccHHHHHHHHHHHhh
Confidence 5666655555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.44 E-value=4 Score=37.65 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA--VTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|+.....+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999886444333 3456677777788888888777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.08 E-value=28 Score=35.33 Aligned_cols=171 Identities=9% Similarity=-0.001 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREV-GIMP---SESAITILFKSLLRVGDYGSVWKLFRDMIHLG-----PRPSNYT 176 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~---~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 176 (783)
.|-.|.+++-+.-++.+++.+-..-... |..| .-...-++..+....+.|+++++.|+...+.- +......
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 5666666666666666666655443322 1111 11233446667777788889999888887632 2222346
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC--CCC-CCHH------hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCC
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKY--MCV-ADFF------AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGL 247 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~-~~~~------~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~ 247 (783)
|-.|...|.+..++++|.-+..+.... .+. .|.. +.-.+.-++.+.|+...|.+.|++|.++--++-.+-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra- 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA- 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH-
Confidence 888888899999999988777665432 111 1211 122334456778888888888887776655442210
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 248 SPNVVVYNALLNGYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 248 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 278 (783)
.-......+.+.|-..|+.+.|+.-|+...
T Consensus 244 -~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 -LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred -HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 012234456677888888888888777654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.75 E-value=4.8 Score=39.74 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQ-----FGLTPSSCTCSSL 397 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 397 (783)
++..++..+...|+.+.+...++++....+- +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556677778888888888888888877554 777888888888888888888888887755 4666766655544
Q ss_pred HHH
Q 039931 398 LVG 400 (783)
Q Consensus 398 i~~ 400 (783)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.67 E-value=4.3 Score=40.09 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHhHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHK-----YMCVADFFAYN 213 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 213 (783)
..++..++..+...|+++.+.+.+++.....| -+...|..++.+|.+.|+...|+..++++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 35566777777777777777777777777765 6667777777777777777777777776654 46777777776
Q ss_pred HHHHHH
Q 039931 214 ILINAY 219 (783)
Q Consensus 214 ~li~~~ 219 (783)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.66 E-value=18 Score=32.58 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH-HHHH--H
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSES-AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT-FNAL--I 181 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l--~ 181 (783)
.|..-++ +.+.+..++|+.-|..+.+-|...-+. ..-.....+...|+...|...|+++-...+.|-..- ..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 4444443 466788999999999999887532222 222334456778999999999999988766665541 1111 2
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
-.+...|.+++.....+-+...+-+.....--.|.-+-.+.|++..| ++.|+.+......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A-------~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKA-------KSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHH-------HHHHHHHHccccCc
Confidence 23567899999988888887666555556667777777889999988 78888887643333
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.48 E-value=56 Score=38.10 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
|..|+..|...|+.++|++++.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66677777777777777777776655
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.34 E-value=6.5 Score=36.28 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDI--TTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
+..+...|++.|+.++|.+.+.++.+....|.. ..+-.+|......|++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444444443222221 22334444444444444444444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.33 E-value=23 Score=34.75 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhH------HHHHHHHHHhc
Q 039931 674 NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQE------NAEFFQETSEK 731 (783)
Q Consensus 674 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~------~~~~~~~~~~~ 731 (783)
+...+.|.++|.+.+|.++.++++.++|- +...|..|.+.|+.+++ .++...+.+++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 34455789999999999999999999985 89999999999987665 45555444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.18 E-value=1.1 Score=28.46 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888754
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.83 E-value=21 Score=32.36 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 039931 237 MIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSG 316 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 316 (783)
+.+..+.+.++.|+...|..+|+.+.+.|++..- ..+...++-||.......+-.+.. ....+.++=-+|.++=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 4555666677888888888888888888876543 344445566666555544422221 2223333333333210
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 317 LLPNCTLYDITVAGLCWAGRLDEAMEFFEDM 347 (783)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (783)
...+..++..+...|++-+|.++.++.
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 002333444555555555555555543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.39 E-value=0.73 Score=28.91 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhH
Q 039931 172 PSNYTFNALILGFCRNGCIRIG 193 (783)
Q Consensus 172 ~~~~~~~~l~~~~~~~g~~~~A 193 (783)
.|..+|+.+...+...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.6 Score=43.18 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=48.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 039931 147 KSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTS 226 (783)
Q Consensus 147 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (783)
+.|.++|++++|+.+|.......| .|++++..-..+|.+..++..|..-....+.. -...+.+|.+.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHH
Confidence 346677777777777777666543 36666666666777776666655544444321 123445555555544
Q ss_pred hHhhhccchHHHHHHH
Q 039931 227 YALGKCGAGRMIFDMI 242 (783)
Q Consensus 227 ~A~~~~~~a~~~~~~m 242 (783)
.+++...+|.+-.+..
T Consensus 176 ~~Lg~~~EAKkD~E~v 191 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETV 191 (536)
T ss_pred HHHhhHHHHHHhHHHH
Confidence 4444433333333333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.30 E-value=6.9 Score=38.60 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHH
Q 039931 598 DPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA---GIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTN 674 (783)
Q Consensus 598 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 674 (783)
.....+...++..-.....++++..++-++... -..|+... .+.+.-+.+-+.++++.++..=+..|+-||..+..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHccChHHHHHHHhCcchhccccchhhHH
Confidence 334444444444444455566666555555421 11222211 11222222234445555555555566666666666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhh
Q 039931 675 VLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 675 ~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
.+++.+.+.|++.+|.++.-.++.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666655544443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.88 E-value=11 Score=37.34 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIG---FVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNII 537 (783)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 537 (783)
..+...++..-....+++.+...+-++...- ..|+... .++++.+. .-++++++.++..=++-|+-||.++++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3344444444444555666665555554321 1111111 11222222 22445555555555555666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~ 559 (783)
|+.+.+.+++.+|.++...|+.
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666655555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.87 E-value=48 Score=34.55 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 320 NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISP---SIFAFNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
...++..+.....+.|.++.|...+.++...+..+ .......-+...-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777888888888888888877643211 233334445666677888888887777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.84 E-value=34 Score=32.80 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=21.8
Q ss_pred HHHhcCChhhHHHHHHHHhhc----CCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 679 HFCKQGMPEKTLLWGQKLSEI----SFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~----~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
.+....|+..|...++..-++ +++ |..+...|+.+|- +++.|.+.++
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~se-d~r~lenLL~ayd--~gD~E~~~kv 249 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSE-DSRSLENLLTAYD--EGDIEEIKKV 249 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChH-HHHHHHHHHHHhc--cCCHHHHHHH
Confidence 444455566665555554332 222 3445555555542 3344444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.57 E-value=10 Score=34.42 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcc
Q 039931 583 VRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRK-----------MNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDI 650 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 650 (783)
++|+.-|++.+. +.|+. .++..+..+|...+. +++|.+.|++..+ ..|+..+|+.-+ +.
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksL-----e~ 122 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSL-----EM 122 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHH-----HH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHH-----HH
Confidence 334444444444 56654 666666666655432 3445555555544 568888887766 33
Q ss_pred HHHHHHHHHHHHHcCCC
Q 039931 651 LDRAIIIAAKLLKMAFV 667 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~ 667 (783)
.++|-++..++.+.+..
T Consensus 123 ~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 123 AAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHTHHHHHHHHHHSSS-
T ss_pred HHhhHHHHHHHHHHHhh
Confidence 45677777777765543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.15 E-value=51 Score=34.30 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=83.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 039931 564 PDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP---DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN--TVT 638 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~ 638 (783)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-...+...|+..+|+..+++.++..+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345688889999999999999999999988743211 334444556777788999999999988876322222 111
Q ss_pred HHHHHHHH----h---h-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------hcCChhhHHHHHHHHhhcCCCCC
Q 039931 639 YNTLMNGV----C---C-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFC------KQGMPEKTLLWGQKLSEISFDFD 704 (783)
Q Consensus 639 ~~~li~~~----~---~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~g~~~~A~~~~~~~~~~~~~~d 704 (783)
...+..+. . . ....+-.+.. ...+..+..-+. ..+..+++...++++.++.|. .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~ 291 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELK-----------AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-W 291 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHH-----------HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-H
Confidence 11111110 0 0 0000000000 011212221222 347889999999999999876 6
Q ss_pred HHHHHHHHHHHhh
Q 039931 705 ETSYKIMDRAYHN 717 (783)
Q Consensus 705 ~~~~~~l~~~y~~ 717 (783)
..+|..++..+.+
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 6678777776543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.97 E-value=1.4 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCC
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEISF 701 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 701 (783)
+|..+...|...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 567777888999999999999999999876
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.92 E-value=77 Score=36.12 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHH
Q 039931 298 KYGGMEDGDRLLRDLSVSGLLPNCT-----LYDITVAGLCWAGRLDEAMEFFEDMFEK----GISPSIFAFNSI-IAAYS 367 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l-i~~~~ 367 (783)
...+++.|+..+.+.....-.++.. ....++..+.+.+... |...+++.++. +..+-...+..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4556666666666554332222111 1123344454544444 66666665442 111112222222 22222
Q ss_pred HcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcC---------CCCCHhhHHHHH
Q 039931 368 RAGLEENAFEAYKIMHQFG---LTPSSCTCSSLLVGLC--KKGRLPEAWDLLCKMIEKG---------FPINKVAFTVLL 433 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~li 433 (783)
..+++..|++.++.+...- ..|-..++..++.+.. +.+..+++.+.++.+.... ..|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3356666666666654421 1223333333333332 3444555555555553221 122334455555
Q ss_pred HHHH--hcCCHHHHHHHHHHH
Q 039931 434 DGYF--RIGDLIGAQSLWNEL 452 (783)
Q Consensus 434 ~~~~--~~g~~~~A~~~~~~~ 452 (783)
+.++ ..|+++.+...++++
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 4433 455555555444433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.66 E-value=60 Score=34.67 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHH
Q 039931 87 KHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDM 165 (783)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~ 165 (783)
..++.........++.|+..|..-+.-+-+.+.+.+.-.+|..|+... +.++..|-.-..-...-+ +++.|..+|.+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 345555555556677788888888877777777888889999988876 455566654433333333 388888888888
Q ss_pred HhcCCCCCHHHHHH
Q 039931 166 IHLGPRPSNYTFNA 179 (783)
Q Consensus 166 ~~~~~~~~~~~~~~ 179 (783)
++.+| .++..|-.
T Consensus 167 LR~np-dsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNP-DSPKLWKE 179 (568)
T ss_pred hhcCC-CChHHHHH
Confidence 88765 44444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.57 E-value=34 Score=30.91 Aligned_cols=123 Identities=12% Similarity=0.101 Sum_probs=54.2
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCh
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPNNFA-YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNF-TFNII--INGFCKQGRM 547 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~ 547 (783)
.+.+..++|+.-|.++.+.|...-++. -..........|+...|...|+++-.....|-+. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445556666666666665543221111 1111222345566666666666655543333221 11111 1123345555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 548 KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 548 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+....-.+.+...+-+--...-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55544444443322111222333444444455566666665555554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.54 E-value=87 Score=35.63 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhcCCCCCHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGD-------YGSVWKLFRDMIHLGPRPSNY 175 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~-------~~~A~~~~~~~~~~~~~~~~~ 175 (783)
+| .+|--|.|+|.+++|.++....... +......+...+..+....+ -+.....|++..+.....|++
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 55 5666789999999999999554432 34455667778888876533 236667778777665544665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.43 E-value=9.2 Score=41.29 Aligned_cols=129 Identities=17% Similarity=0.103 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
.-+.+++.+-+.|..++|+++- +|..-- .....+.|+++.|.++..+. .+..-|..|.+...
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 3455566666666666665441 222111 12223455555555554432 13344555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. .|....+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 55555555555554433 34444445555554444333333333331 1122233444555555554
Q ss_pred HH
Q 039931 413 LL 414 (783)
Q Consensus 413 ~~ 414 (783)
++
T Consensus 743 lL 744 (794)
T KOG0276|consen 743 LL 744 (794)
T ss_pred HH
Confidence 44
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.10 E-value=3.1 Score=25.73 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~ 167 (783)
|..+...+...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33344444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.65 E-value=92 Score=35.28 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP---NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNII 292 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 292 (783)
++.+.+.+.+++|+ .+-+.. .|..| -...+-.+|..+.-.|++++|-...-.|... +..-|.--
T Consensus 363 i~Wll~~k~yeeAl-------~~~k~~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~ 429 (846)
T KOG2066|consen 363 IDWLLEKKKYEEAL-------DAAKAS--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELW 429 (846)
T ss_pred HHHHHHhhHHHHHH-------HHHHhc--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHH
Confidence 55666777777774 222222 12233 3456788899999999999999999888765 66667666
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 293 VSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 293 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
+.-+...++......+ +.......+..+|..++..+..
T Consensus 430 V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 430 VFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 6666666665443222 2222223456677777776665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.36 E-value=22 Score=38.60 Aligned_cols=150 Identities=13% Similarity=0.021 Sum_probs=86.5
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
-.|+++.|..++..+. ....+.+.+.+.+.|-.++|++.+....+-| ....+.|
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D~d~rF-------------------elal~lg 651 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTDPDQRF-------------------ELALKLG 651 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCChhhhh-------------------hhhhhcC
Confidence 3456666655444332 2345566677777777766653322221112 2234567
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 266 DIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+.-..+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 7777777665542 556677777777777887777777766544 3445555666666554444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 346 DMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIM 382 (783)
Q Consensus 346 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (783)
...+.|. .|...-+|...|+++++.+++..-
T Consensus 717 ~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444433 233444566678888877776554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.13 E-value=48 Score=31.63 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHH--Hhh--ccHHHHHHHHHHHHHcCCCCCHHHHHH---H-HHHHHhc-
Q 039931 615 RKMNQAAMMLDELVS--AGIVPNTVTYNTLMNG--VCC--DILDRAIIIAAKLLKMAFVPNVVTTNV---L-LSHFCKQ- 683 (783)
Q Consensus 615 g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~--~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~---l-l~~~~~~- 683 (783)
.+++.|+..|++.-+ .|-..+...--+++.. |.. +++.+|+++++++....+.-+..-|.. + -.++|+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 456666666666654 2333333333344432 222 788999999999776544444444432 2 2234443
Q ss_pred -CChhhHHHHHHHHhhcCCCCCH-HHHHHHHHHHhhh-hHHHHHHHHHHhc
Q 039931 684 -GMPEKTLLWGQKLSEISFDFDE-TSYKIMDRAYHNI-QENAEFFQETSEK 731 (783)
Q Consensus 684 -g~~~~A~~~~~~~~~~~~~~d~-~~~~~l~~~y~~~-~~~~~~~~~~~~~ 731 (783)
+|.-.+...+++-.++.|.+.. .-+..|-+....+ .++.+.+-+..+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 5666778888899888887533 3455555544333 2455555554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.97 E-value=38 Score=30.34 Aligned_cols=15 Identities=13% Similarity=0.322 Sum_probs=6.1
Q ss_pred hcCChHHHHHHHHHH
Q 039931 543 KQGRMKPAIDAFMDM 557 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m 557 (783)
..|++.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.89 E-value=5.3 Score=39.78 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=68.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
++-|.+.|.+++|+..+.+-.... +.|.+++..-..+|.+..++..|...|+.|..+-+.-.+ +|+.-+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K--------AYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK--------AYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH--------HHHHHHHH
Confidence 345889999999999999877653 348999999999999999998887777776655443332 55555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPD 285 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~ 285 (783)
-...|...+|.+-++..++. +|+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhh--Ccc
Confidence 55566677777777766654 455
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=81.54 E-value=99 Score=34.87 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRM 130 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 130 (783)
++.-|+ .+..+.-.|.++.|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 366777 577778889999999998543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.18 E-value=1e+02 Score=34.89 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=59.0
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 039931 148 SLLRVGDYGSVWKLFRDMIHLGPRP-SNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTS 226 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (783)
-+.+.+.+++|+..-+.....-+.. -...+...|..+...|++++|-...-.|.. -+..-|---+..+...++.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l- 439 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL- 439 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc-
Confidence 3556667777776655543221110 123456667777777778777777777763 3455565555666665554
Q ss_pred hHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 227 YALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 227 ~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
..++.-++......+...|..++..+..
T Consensus 440 ---------~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 ---------TDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ---------chhhccCCCCCcccCchHHHHHHHHHHH
Confidence 3345555544333455677777776665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.95 E-value=56 Score=31.69 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCC
Q 039931 335 GRLDEAMEFFEDMFEKGISPSI---FAFNSIIAAYSRAGLEENAFEAYKIMHQF---GL--TPSSCTCSSLLVGLCKKGR 406 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~ 406 (783)
.+.++|+.-|++.++...+... ...-.+|..+.+.+++++..+.|+++... .+ .-+..+.+++++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4566777777776664222222 22344567777777777777777766431 01 1133455666665555555
Q ss_pred hhHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHH
Q 039931 407 LPEAWDLLCKMIEK-----GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFP-----------DAVAFSAYING 470 (783)
Q Consensus 407 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~ 470 (783)
.+.-.++++.-++. +-...-.+-+.|...|...|++....++++++...-... -...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 54444444332211 111222344556677777777777777777665431100 12334444555
Q ss_pred HHccCChHHHHHHHHHHH
Q 039931 471 LSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~ 488 (783)
|....+-.+-..++++..
T Consensus 201 YT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhcccHHHHHHHHHHH
Confidence 555555555555555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.5 bits (207), Expect = 8e-17
Identities = 23/196 (11%), Positives = 62/196 (31%), Gaps = 4/196 (2%)
Query: 432 LLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFL---EMS 488
LL L Q+ + ++ ++ A+ + A+ + +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMK 548
+ + YN+++ G+ +G E + + ++ GL PD ++ + +Q +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 549 PAIDAFM-DMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIR 607
I+ + M + GL + L+ +A + ++ P +
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 608 MHGYCNIRKMNQAAMM 623
+ +
Sbjct: 278 LRDVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.6 bits (202), Expect = 3e-16
Identities = 27/254 (10%), Positives = 67/254 (26%), Gaps = 6/254 (2%)
Query: 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPA--- 550
P L+ + L+ + Q L ++ A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHG 610
+ + + + YN ++ G+ + ++ + GL PD+ +Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 611 YCNIRKMNQAA-MMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMA-FVP 668
+ L+++ G+ + L++ + +A+ + +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 669 NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQET 728
V T+ LL + L E + + + + +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKT-LQCLFEKQLHMELASRVCVVSVEKPTLPS 328
Query: 729 SEKSLFLDFLMGCM 742
E L
Sbjct: 329 KEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 4e-13
Identities = 28/247 (11%), Positives = 61/247 (24%), Gaps = 5/247 (2%)
Query: 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTL 572
A LE RQ P ++ + + + L
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 573 IGGYCKALDIVRADELVNK---MYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629
+ A L+ + YN M G+ + +L +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 630 AGIVPNTVTYNTLMNGVC--CDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPE 687
AG+ P+ ++Y + + ++ + + T VLLS + + +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 688 KTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCMTLNVT 747
S + + R + + + + + +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELA 313
Query: 748 GDFCVQS 754
CV S
Sbjct: 314 SRVCVVS 320
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 8e-13
Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 4/195 (2%)
Query: 236 RMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANML---YEEMRSRDIAPDAVTFNII 292
+ + LS A + + A+ L + R + +N +
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 293 VSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAME-FFEDMFEKG 351
+ G + G ++ +L + +GL P+ Y + + + +E E M ++G
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 352 ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAW 411
+ +++ RA + + + P S LL + K
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
Query: 412 DLLCKMIEKGFPINK 426
L + K
Sbjct: 292 KLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.4 bits (160), Expect = 3e-11
Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 15/227 (6%)
Query: 243 QEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGM 302
L + + + G ++ +EE +R + ++ V
Sbjct: 60 LTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVE-------- 111
Query: 303 EDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA---MEFFEDMFEKGISPSIFAF 359
+ +SG + +L A + +K ++ +
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAF---FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168
Query: 360 NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA-WDLLCKMI 418
N+++ ++R G + ++ GLTP + ++ L + ++ + L +M
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS 465
++G + + VLL R L + + P V S
Sbjct: 229 QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 7e-11
Identities = 25/275 (9%), Positives = 73/275 (26%), Gaps = 12/275 (4%)
Query: 119 MSAEVMEILYRMREVGIMPSESAITILFKSL-------LRVGDYGSVWKLFRDMIHLGPR 171
+ + RM+ + + FK+L R+ L
Sbjct: 30 LEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPES 89
Query: 172 PSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGK 231
P L+ + + ++ + + Q A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 232 CGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNI 291
++ +++ + +YNA++ G+ + + + ++ + PD +++
Sbjct: 150 L----VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 292 IVSGHCKYG-GMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEK 350
+ + +R L +S GL + ++ A L +
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 351 GISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385
P + ++ + + + +
Sbjct: 266 PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 19/176 (10%), Positives = 47/176 (26%), Gaps = 11/176 (6%)
Query: 107 LDALLHGYL---RVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFR 163
L A L ++ ++ ++ + + R+ + + + R G + + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 164 DMIHLGPRPSNYTFNALILGFCRNG-CIRIGESLLHVMHKYMCVADFFAYNILINAYCIR 222
+ G P ++ A + R E L M + +L++
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 223 GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMR 278
+ P V + LL L+ ++
Sbjct: 250 TVLKAV-------HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 6e-12
Identities = 109/783 (13%), Positives = 203/783 (25%), Gaps = 273/783 (34%)
Query: 4 NEKGY----ILKAFSQKF-----CPY---FLVKVMKLLE--------TRETAFAFFKLVV 43
E Y IL F F C ++ E + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 44 CDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRIGA---GRSKHMVEF------MC 94
E ++ F E +L + +++S I S + +
Sbjct: 72 LSKQEEMVQK-------FVEE---VLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 95 DDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMRE---VGI--MPSESAITILFKSL 149
+D +F R++ ++ + L +R V I + S T + +
Sbjct: 121 NDNQVFAKYNVS---------RLQPYLKLRQALLELRPAKNVLIDGVLG-SGKTWVALDV 170
Query: 150 LRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR--NGCIRIGESLLHVMHKYMCVA 207
Y V I L L C + + + LL+ +
Sbjct: 171 CL--SY-KVQCKMDFKIFW-----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 208 DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDI 267
+ NI + + I+ + +++ + N LL +
Sbjct: 217 SDHSSNIKLRIHSIQAELR-------------RLLKSKPYE------NCLL-------VL 250
Query: 268 DQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLL--RDLSVSGLLPNCTLYD 325
+++ +A FN+ CK LL R V+ L T
Sbjct: 251 L-------NVQNAKAW-NA--FNL----SCKI--------LLTTRFKQVTDFLSAATTTH 288
Query: 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385
I+ ++ S+ Y L+ +
Sbjct: 289 IS-------------LDHHSMTLTPDEVKSLL------LKY----LDCRPQD-------- 317
Query: 386 GLTPSSCTCSSLLVGLCKKGRL----PEAWD----LLCKMIEKGFPINKVAFTVLLDGYF 437
L T + + + WD + C + I + + VL +
Sbjct: 318 -LPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEY 371
Query: 438 RIGDLIGAQSLWNELNRRKIFPDAV-----AFSAY------------INGLSKAGLVDEA 480
R +++ L+ +FP + S +N L K LV++
Sbjct: 372 R--------KMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 481 YGVFLEMSRIGFVPNNFAY--NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIII 538
P S+ + KL L R + +N I
Sbjct: 421 -------------PKESTISIPSIY--LELKVKLENEYALHRSIVDH--------YN-IP 456
Query: 539 NGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY-CKALDIVRADELVNKMYAGGL 597
F + P + D Y Y+ + G+ K ++ L ++ L
Sbjct: 457 KTFDSDDLIPPYL----DQY---------FYSHI--GHHLKNIEHPERMTLFRMVF---L 498
Query: 598 DPDITTYNIRMHGYCNIRKMNQAAMMLD-ELVSAGIVPNTVTYNTLMNGVCCDILDRAII 656
D IR + + + I N Y L+N ILD
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN----AILD---- 550
Query: 657 IAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716
F+P + N++ S + L I+ E I + A+
Sbjct: 551 ---------FLPK-IEENLICSKYT-------------DLLRIAL-MAEDEA-IFEEAHK 585
Query: 717 NIQ 719
+Q
Sbjct: 586 QVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 83/560 (14%), Positives = 166/560 (29%), Gaps = 155/560 (27%)
Query: 266 DIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDR-LLRDLSVSGLL--PNCT 322
D + Y + +DI + + CK ++D + +L + ++ +
Sbjct: 8 DFETGEHQY---QYKDILSVFED-AFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAV 61
Query: 323 -----LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFE 377
L+ L + +F E++ F + I + + +
Sbjct: 62 SGTLRLFWT----LLSKQE-EMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYI 113
Query: 378 AYK-IMHQFG--LTPSSCTCSSLLVGLCKKGRLPEAWDL---LCKMIEKGFPINKVAFTV 431
+ ++ + + RL L L ++ + A V
Sbjct: 114 EQRDRLYNDNQVFAKYNVS------------RLQPYLKLRQALLEL--------RPAKNV 153
Query: 432 LLDGYFRIGDLIGAQSLWNE-LNRRKI---FPDAVAFSAYINGLSKAGLVDEAYGVFLEM 487
L+DG G G + + K+ + F ++N + V +
Sbjct: 154 LIDGVL--G--SGKTWVALDVCLSYKVQCKMDFKI-F--WLN----LKNCNSPETVLEML 202
Query: 488 SRI--GFVPNNFAYNSLIAGFCN-RGKLNEA-LKLEREMRQK----GLLP-DNFTFNIII 538
++ PN + S N + +++ +L R ++ K LL N
Sbjct: 203 QKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 539 NGF---CK---QGRMKPAIDA---------FMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583
N F CK R K D +D + L PD K LD
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVK-SLLLKYLDC- 313
Query: 584 RADEL------VN----KMYAGGLDPDITTY-NIRMHGYCNIRKMNQA-AMMLDELVSA- 630
R +L N + A + + T+ N + + N K+ L+ L A
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAE 370
Query: 631 --------GIVPNTV--TYNTLMNGVCCDIL------DRAIIIAAKLLKMAFV-----PN 669
+ P + L ++ +++ KL K + V +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 670 VVTTNVLLSHFCKQGMPEKTLLWGQKLSE-----ISFDFDETSYKIMDR------AYHNI 718
++ + + E L + + + +FD D+ +D+ +H
Sbjct: 425 TISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 719 Q-ENAEFFQETSEKSLFLDF 737
E+ E +FLDF
Sbjct: 483 NIEHPERMTLFRM--VFLDF 500
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 81/254 (31%)
Query: 537 IINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY---CK--ALDIVRADELVNK 591
+ + + + F++ L + Y L+ + ++ E ++
Sbjct: 67 LFWTLLSKQ--EEMVQKFVE---EVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 592 MYAGGLDPDITTYNI-RMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDI 650
+Y YN+ R+ Y +R+ L EL A V + + G
Sbjct: 119 LYNDN--QVFAKYNVSRLQPYLKLRQA------LLELRPAKNV---LIDG--VLG----- 160
Query: 651 LDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLW---GQ---------KLSE 698
+ K V +V LS+ + M K + W L +
Sbjct: 161 -------SGK--------TWVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQK 204
Query: 699 ISFDFDETSYKIMDRAYHNIQENAE---------FFQETSEKSLF-LD----------FL 738
+ + D D + NI+ + E L L F
Sbjct: 205 LLYQIDPNWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 739 MGCMTLNVTGDFCV 752
+ C L T V
Sbjct: 264 LSCKILLTTRFKQV 277
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 46/284 (16%), Positives = 86/284 (30%), Gaps = 77/284 (27%)
Query: 475 GLVDEAYGVFLEMSRIGFVPNNFA-----YNSLIAGFCNRGKLNEALKLERE----MRQK 525
++ Y FL MS I + Y N ++ + R ++
Sbjct: 85 EVLRINYK-FL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 526 GLLPDNFTFNIIINGFCKQGRM----KP--AIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579
LL N++I+G + K A+D + + + + L C +
Sbjct: 143 ALLELRPAKNVLIDG------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNS 194
Query: 580 LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIR-KMNQAAMMLDELVSAGIVPNTVT 638
+ V E++ K+ +DP+ + R NI+ +++ L L+ + N
Sbjct: 195 PETVL--EMLQKLLYQ-IDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--- 245
Query: 639 YNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHF---CKQGMPEKTLLWGQK 695
C +L NV + F CK LL
Sbjct: 246 --------CLLVLL----------------NVQNAKAW-NAFNLSCK------ILL---- 270
Query: 696 LSEISFDFDETSYKIMDRAYH-NIQENAEFFQETSEKSLFLDFL 738
+ T + H ++ ++ KSL L +L
Sbjct: 271 ---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 55/354 (15%), Positives = 93/354 (26%), Gaps = 39/354 (11%)
Query: 216 INAYCIRGQTSYALGK-CGAGRMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANML 273
+ A AL + + Q GL+P VV + G + +
Sbjct: 106 VVAIASHDGGKQALETVQRL---LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162
Query: 274 YEEMRSRDIAPD-AVTFNIIVSGHCKYGGMEDGDRLLRDLS-VSGLLPNCTLYDITVAGL 331
++ + P+ V G K +E RLL L GL P + +A
Sbjct: 163 LC--QAHGLTPEQVVAIASN--GGGKQA-LETVQRLLPVLCQAHGLTPQ---QVVAIASN 214
Query: 332 CWA----GRLDEAMEFFEDMFEKGISP-SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFG 386
+ + ++P + A S + G
Sbjct: 215 GGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHG 270
Query: 387 LTPSSC-TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGA 445
LTP +S G + +LC+ P VA G + +
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGKQALETVQRL 329
Query: 446 QSLWNELNR-RKIFPD-AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN-FAYNSL 502
L + + P VA +++ G V V + G P A S
Sbjct: 330 ---LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASN 384
Query: 503 IAGFCNRGKLNEALK-LEREMRQKGLLPDN-FTFNIIINGFCKQGRMKPAIDAF 554
G + L L + L P+ G ++ +
Sbjct: 385 GGGKQALETVQRLLPVLCQAHG---LTPEQVVAIASHDGGKQALETVQRLLPVL 435
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 69/427 (16%), Positives = 121/427 (28%), Gaps = 44/427 (10%)
Query: 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANMLY 274
+ A AL + Q GL P+ VV + + G + + +
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLC--QAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 275 EEMRSRDIAPDAVT--FNIIVSGHCKYGGMEDGDRLLRDLS-VSGLLPNCTL-YDITVAG 330
++ + PD V + +E RLL L GL P+ + G
Sbjct: 284 C--QAHGLTPDQVVAIASHGGG----KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 337
Query: 331 LCWAGRLDEAMEFFEDMFEKGISP-SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP 389
+ + ++P + A S + GLTP
Sbjct: 338 KQALETVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTP 393
Query: 390 SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGA---- 445
+ G + +LC+ P VA G + +
Sbjct: 394 DQVVAIASNGGKQALETVQRLLPVLCQAHGL-TPDQVVAIASHDGGKQALETVQRLLPVL 452
Query: 446 -QSLWNELNRRKIFPD-AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503
Q+ L P VA +++ G V + V + + A S I
Sbjct: 453 CQTH--GLT-----PAQVVAIASHDGGKQALETVQQLLPVLCQAHGL-TPDQVVAIASNI 504
Query: 504 AGFCNRGKLNEALKLEREMRQKGLLPDNF-TFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562
G + L + + GL PD G ++ + + GL
Sbjct: 505 GGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--GL 560
Query: 563 VPDIVTYNTLIGGYCKALDIVRADELVNKMY--AGGLDPD-ITTYNIRMHGYCNIRKMNQ 619
PD V GG +AL+ L+ + A GL + + G + + +
Sbjct: 561 TPDQVVAIASNGGGKQALE--TVQRLL-PVLCQAHGLTQVQVVAIASNIGGKQALETVQR 617
Query: 620 AAMMLDE 626
+L +
Sbjct: 618 LLPVLCQ 624
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.21 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.87 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.86 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.71 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.71 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.58 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.51 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.45 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.36 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.34 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.29 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.28 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.24 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.14 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.0 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.99 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.97 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.91 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.9 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.84 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.84 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.8 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.68 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.67 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.65 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.64 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.53 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.49 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.44 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.43 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.35 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.3 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.23 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.97 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.46 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.41 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.29 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.27 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.15 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.13 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.1 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.99 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.97 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.51 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.84 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.52 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.21 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.91 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.37 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.25 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.14 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.87 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.77 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.08 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.89 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.18 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.39 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.72 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.69 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.47 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.79 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.04 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.47 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=379.60 Aligned_cols=523 Identities=13% Similarity=0.033 Sum_probs=410.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 149 LLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 149 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
..+.|.+..+...+..+ +.+++..|+.++..|.+.|++++|..+|++|.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 45667777777777665 5578889999999999999999999999999854 57888999999999999999988
Q ss_pred hhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHH
Q 039931 229 LGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRL 308 (783)
Q Consensus 229 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 308 (783)
..+|+.+... .++..+++.++.+|.+.|++++|+++|+++. |+.. ...++.+.++
T Consensus 137 -------~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~------- 191 (597)
T 2xpi_A 137 -------KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM------- 191 (597)
T ss_dssp -------HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-------
T ss_pred -------HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-------
Confidence 5677776432 5788999999999999999999999998532 2210 0111111111
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH--HH-HHHHHhC
Q 039931 309 LRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAF--EA-YKIMHQF 385 (783)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~ 385 (783)
...+...+..+|+.++.+|.+.|++++|.++|++|.+.++. +...+..+...+...+..+.+. .+ +..+...
T Consensus 192 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 192 ----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp ----CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ----cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 12344567788888999999999999999999999886543 5566666665554433322222 11 4555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 039931 386 GLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS 465 (783)
Q Consensus 386 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 465 (783)
+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.++. +..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 343 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYP 343 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHH
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHH
Confidence 55555666777788888999999999999888776 468899999999999999999999999999876544 778899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQG 545 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 545 (783)
.++.++.+.|++++|.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 99999999999999999999998653 557888999999999999999999999999876433 6889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 546 RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 546 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 625 (783)
++++|.++|+++.+.+ +++..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998864 4578899999999999999999999999998743 3478899999999999999999999999
Q ss_pred HHHHC----CCCCC--HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 626 ELVSA----GIVPN--TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 626 ~m~~~----g~~p~--~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
++.+. +..|+ ..+|..+...++. |++++|.+.++++++.+ +.+..+|..+...|.+.|++++|.++++++.+
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99864 77888 6789999988886 89999999999998854 23678999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 039931 699 ISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 699 ~~~~~d~~~~~~l~~~y~ 716 (783)
++|+ +..+|..|+++|.
T Consensus 579 ~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 579 ISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HCTT-CHHHHHHHHHTTC
T ss_pred cCCC-ChHHHHHHHHHHh
Confidence 9998 8899999988774
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=377.05 Aligned_cols=483 Identities=14% Similarity=0.065 Sum_probs=359.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
+...|+.++..+.+.|++++|+.+|++|.... |+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 34444445555555555555555554444322 33344444445555555555555554444322 344444555555
Q ss_pred HHHhcCCcchHhhhccchHHHHHH-HH--------------HCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039931 218 AYCIRGQTSYALGKCGAGRMIFDM-IQ--------------EEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDI 282 (783)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~~~~~-m~--------------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 282 (783)
+|++.|++++| .++|++ ++ ..|..+++.+|+.++.+|.+.|++++|+++|++|.+.++
T Consensus 159 ~~~~~g~~~~A-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 159 CLVKLYDWQGA-------LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHTTCHHHH-------HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhHHHH-------HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55555555444 223331 11 123455789999999999999999999999999998743
Q ss_pred CCCHhHHHHHHHHHHccCChhHHH--HH-HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 283 APDAVTFNIIVSGHCKYGGMEDGD--RL-LRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAF 359 (783)
Q Consensus 283 ~p~~~t~~~ll~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 359 (783)
. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|
T Consensus 232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 3 4555666655544433322221 11 444555555556667777888899999999999999998875 4789999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 039931 360 NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRI 439 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (783)
+.++.+|.+.|++++|+++|+++.+.+. .+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence 9999999999999999999999987653 377889999999999999999999999998764 44788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 440 GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLE 519 (783)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 519 (783)
|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998875433 68899999999999999999999999998764 457888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039931 520 REMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT----GLVPD--IVTYNTLIGGYCKALDIVRADELVNKMY 593 (783)
Q Consensus 520 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 593 (783)
+++.+.... ++.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.
T Consensus 465 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999886544 7888999999999999999999999998875 66777 6789999999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 039931 594 AGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTL 642 (783)
Q Consensus 594 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 642 (783)
+.+ +.+..+|..+..+|.+.|++++|.+.|+++++ +.|+. ..+..+
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l 590 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLL 590 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 743 34788899999999999999999999999887 34554 334333
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-30 Score=276.57 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=150.1
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 039931 445 AQSLWNELNRRKIFPDA-VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGK---------LNE 514 (783)
Q Consensus 445 A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~ 514 (783)
+..+.+++.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555544333 34667777777777777777777777777777777777777777766543 577
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 515 ALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 515 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 039931 595 GGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC 648 (783)
Q Consensus 595 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 648 (783)
.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888877763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-26 Score=244.45 Aligned_cols=375 Identities=14% Similarity=0.046 Sum_probs=287.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 039931 329 AGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLP 408 (783)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 408 (783)
..+.+.|++++|.+.++++.+..+. +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3456677777777777777765333 45566666777777777888777777776653 346667777777788888888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 039931 409 EAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 488 (783)
+|...|+++.+..+ .+..++..+...+.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888877777642 25667777788888888888888888877765433 45566677777778888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-Chh
Q 039931 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIV 567 (783)
Q Consensus 489 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 567 (783)
+.. +.+..+|..+...+.+.|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+. .| +..
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 653 335677888888888888888888888888876543 5777888888888888888888888888775 34 577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV 646 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 646 (783)
++..+...|...|++++|.+.++++.+. .| +..+|..+..++.+.|++++|.+.|+++++.. .++..++..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 8888888888888888888888888874 34 56778888888888899999998888888642 23456777777766
Q ss_pred hh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 647 CC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 647 ~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
.. |++++|...++++++ ..| +..+|..+...|.+.|++++|+..+++++++.|+ +..+|..++.+|..
T Consensus 316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKE 385 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHH
Confidence 65 788899999988887 345 4578899999999999999999999999999987 88899999887754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=271.57 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=145.7
Q ss_pred HHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hHHH
Q 039931 411 WDLLCKMIEKGFPINK-VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGL---------VDEA 480 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------~~~A 480 (783)
..+.+++.+++....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3444445444443332 34566666667777777777777777666666777777777766665443 5677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 481 YGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 481 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888878888888888888777754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-26 Score=242.21 Aligned_cols=363 Identities=14% Similarity=0.031 Sum_probs=238.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..++..| .+..+|..++..+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 4566778888888888888887765 45566777777888888888888888888887755 677788888888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhH
Q 039931 190 IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQ 269 (783)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 269 (783)
+++|...|+++.+.. +.+..+|..+..++.+.|++++| ...++++.+..+ .+...+..+...+...|++++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGA-------VQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHH-------HHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHH
Confidence 888888888887654 34456778888888888888877 455666655432 144566667777777788888
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 270 ANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 270 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
|.+.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...|++...
T Consensus 154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 154 AKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887765322 4566777777777777777777777776665322 345566666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 039931 350 KGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAF 429 (783)
Q Consensus 350 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (783)
..+. +..++..+...|.+.|++++|++.|+++.+.+ +.+..+|..+...+.+.|++++|...++++.+.. +.+..++
T Consensus 232 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 308 (388)
T 1w3b_A 232 LSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSL 308 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 4332 45566666666666666666666666666543 1234455556666666666666666666665552 2345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 430 TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
..+...+.+.|++++|.+.++++.+..+. +..++..+...+.+.|++++|...|+++.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555555544221 344555555555555555555555555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-22 Score=225.96 Aligned_cols=453 Identities=10% Similarity=-0.033 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..+..+...|.+.|++++|+..|+++++.+ |+..++..+...+.+.|++++|+..|+++++.+| .+..++..++.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence 467788899999999999999999999886 6899999999999999999999999999999876 6778899999999
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
...|++++|...|+++.+.+ +++......++..+.+......+ .+.+..+...+..|+...++.-.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKL-------KEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHH-------TTC--------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 99999999999999999876 34555555555555443322222 11222222211122222211111111111
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cCCHHHHH
Q 039931 265 RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW---AGRLDEAM 341 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~ 341 (783)
. ..|+.......+..+....... ......+...+......+.. .|++++|.
T Consensus 156 ~----------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 156 E----------------NLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp -----------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred c----------------CCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 1 1122222211111111000000 00001112222223332332 56666666
Q ss_pred HHHHHHHH-----C--CC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 039931 342 EFFEDMFE-----K--GI------SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLP 408 (783)
Q Consensus 342 ~~~~~m~~-----~--g~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 408 (783)
..|+++.+ . .+ +.+..++..+...+...|++++|...|+++.+.. |+..++..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHH
Confidence 66666655 2 11 1134566677777777777777777777777654 33666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 039931 409 EAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 488 (783)
+|...++++.+.... +..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.
T Consensus 288 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777766433 5667777777778888888888888777776443 55677777777888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 039931 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLL-PD----NFTFNIIINGFCK---QGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 489 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 560 (783)
+.. +.+..++..+...+.+.|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.
T Consensus 366 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 366 RKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 652 335667777778888888888888888877664222 11 3377777788888 88888888888888775
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDIT 602 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 602 (783)
. +.+..++..+...|.+.|++++|.+.++++.+ +.|+..
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 3 33567777888888888888888888888877 356543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-22 Score=224.86 Aligned_cols=454 Identities=10% Similarity=-0.031 Sum_probs=322.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 140 SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 140 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
..+..+...+.+.|++++|+..|+++++.+ |+..+|..++.++...|++++|...++++.+.. +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456667777888888888888888888865 577888888888888888888888888887765 45567777788888
Q ss_pred HhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 039931 220 CIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKY 299 (783)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 299 (783)
.+.|++++| ...|+.+...+. ++......++..+.+......+.+.+..+...+..|+...+..-......
T Consensus 84 ~~~g~~~~A-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 154 (514)
T 2gw1_A 84 EGLGKFADA-------MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK- 154 (514)
T ss_dssp HHTTCHHHH-------HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHhhHHHH-------HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-
Confidence 888888777 466777666543 34444455555554444444444444444433333333222211110000
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHH
Q 039931 300 GGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR---AGLEENAF 376 (783)
Q Consensus 300 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~ 376 (783)
....|+.......+..+...... . ...-+.+...+......+.. .|++++|+
T Consensus 155 ---------------~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 155 ---------------QENLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp -----------------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred ---------------ccCCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 01112221111111100000000 0 00001235555555555554 89999999
Q ss_pred HHHHHHHh-----CCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 377 EAYKIMHQ-----FGL--------TPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 377 ~~~~~m~~-----~~~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
..|+++.+ ..- +.+..++..+...+...|++++|...++++.+.... ..++..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH
Confidence 99999988 311 123567888889999999999999999999988654 888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 444 GAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMR 523 (783)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (783)
+|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 288 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999887544 67789999999999999999999999998864 4467788999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHH---cCCHHHHHHHHHHHHHC
Q 039931 524 QKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL-VPD----IVTYNTLIGGYCK---ALDIVRADELVNKMYAG 595 (783)
Q Consensus 524 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 595 (783)
+.... +..++..+...+.+.|++++|...++++.+... .++ ..+|..+...+.. .|++++|.+.++++.+.
T Consensus 366 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 366 RKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 87433 677889999999999999999999999986421 111 3389999999999 99999999999999884
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 596 GLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVT 638 (783)
Q Consensus 596 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 638 (783)
. +.+..++..+..+|.+.|++++|...|++.++ +.|+...
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 484 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEE 484 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHH
Confidence 2 33678899999999999999999999999997 3566543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-21 Score=208.86 Aligned_cols=378 Identities=12% Similarity=-0.015 Sum_probs=226.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
..|.++.++..+...|.+.|++++|+.+|+++++.. +.+..++..+...+...|++++|+..|+++++.+| .+..++.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 98 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARL 98 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 346677899999999999999999999999999875 56789999999999999999999999999999876 6788999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADF---FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYN 255 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~ 255 (783)
.++.++.+.|++++|...|+++.+.. +.+. .++..++..+.. ..+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~------------------------------~~~~ 147 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM------------------------------QRLR 147 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH------------------------------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH------------------------------HHHH
Confidence 99999999999999999999999864 2334 555555444111 0112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
.+...+.+.|++++|+..|+++.+... .+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+...|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 223334444444444444444444321 133444444444444444444444444444332 123344444444555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHH
Q 039931 336 RLDEAMEFFEDMFEKGISPSIFAFNSI------------IAAYSRAGLEENAFEAYKIMHQFGLTPS-----SCTCSSLL 398 (783)
Q Consensus 336 ~~~~A~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li 398 (783)
++++|...|+++....+. +...+..+ ...+.+.|++++|...|+++.+.. |+ ...+..+.
T Consensus 226 ~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERIC 302 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHH
Confidence 555555555554443221 22222222 555556666666666666655532 22 22455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----------
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYI---------- 468 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li---------- 468 (783)
..+.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+..+. +...+..+.
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhccc
Confidence 55666666666666666655542 224555666666666666666666666666554322 334444433
Q ss_pred --HHHHccC-----ChHHHHHHHHHH-HhCC--CCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 039931 469 --NGLSKAG-----LVDEAYGVFLEM-SRIG--FVPN-------NFAYNSLIAGFCNRGKLNEAL 516 (783)
Q Consensus 469 --~~~~~~g-----~~~~A~~~~~~m-~~~~--~~p~-------~~~~~~li~~~~~~g~~~~A~ 516 (783)
..|...| ..+++.+.++++ .+.. ..|+ ...+..+..+|...++.++..
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2233334 566777777763 3321 0122 236777888888777766543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-21 Score=206.83 Aligned_cols=389 Identities=12% Similarity=0.010 Sum_probs=303.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 039931 123 VMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHK 202 (783)
Q Consensus 123 A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 202 (783)
+...+.++.... +.+...+..++..+.+.|++++|+.+|+++++..| .+..++..++.++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444443 45678899999999999999999999999998865 6788999999999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 203 YMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNV---VVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
.+ +.+..++..+...|.+.|++++| ...|+++.+.... +. .++..++..+...
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--------------- 144 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEA-------EDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ--------------- 144 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH---------------
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH---------------
Confidence 76 46688999999999999999999 6788888875421 33 5666666654322
Q ss_pred CCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 280 RDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAF 359 (783)
Q Consensus 280 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 359 (783)
.+..+...+...|++++|...++++.+... .+..++..+...|.+.|++++|...|+++.+..+. +..+|
T Consensus 145 --------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 214 (450)
T 2y4t_A 145 --------RLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAF 214 (450)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 233445567778999999999999988643 46788999999999999999999999999886443 78999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC--
Q 039931 360 NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSL------------LVGLCKKGRLPEAWDLLCKMIEKGFPIN-- 425 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 425 (783)
..++..|...|++++|+..|+++.+.. +.+...+..+ ...+.+.|++++|...++++.+.... +
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chH
Confidence 999999999999999999999998753 2244444444 78899999999999999999986433 3
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 426 --KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 426 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
...+..+...+.+.|++++|+..++++.+..+. +...|..+...|...|++++|...|+++.+.. +-+...+..+.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 347889999999999999999999999876433 78999999999999999999999999999853 23455555555
Q ss_pred H------------HHHhcC-----CHHHHHHHHHH-HHHCCC--CCC-------HHHHHHHHHHHHhcCChHHHH
Q 039931 504 A------------GFCNRG-----KLNEALKLERE-MRQKGL--LPD-------NFTFNIIINGFCKQGRMKPAI 551 (783)
Q Consensus 504 ~------------~~~~~g-----~~~~A~~l~~~-m~~~~~--~p~-------~~~~~~li~~~~~~g~~~~A~ 551 (783)
. .|...| +.+++.+.+++ ..+..+ .|+ ...+..+..+|...++.+++.
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2 344444 67788888887 343321 122 237888999999998877654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-21 Score=213.50 Aligned_cols=371 Identities=12% Similarity=0.023 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+.+.|++++|+..|+++++.+ +.+..++..+...+.+.|++++|++.|+++++.+| .+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3566777777777777777777777777665 45666777777777777777777777777777654 456667777777
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC--CCCChHHHHHHHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG--LSPNVVVYNALLNGY 261 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~ 261 (783)
+...|++++|...|+.+ .. .|+.. ...+..+...+...+| ...++.+.... ..+........+..+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQA-------MKVLNENLSKDEGRGSQVLPSNTSLASF 170 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHH-------HHHHHHHCC-------CCCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHH-------HHHHHHHHHhCccccccccchHhHHHHH
Confidence 77777777777777532 21 12211 1112222222222222 23333332210 000011112222223
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhHHHHHH-HHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039931 262 VKARDIDQANMLYEEMRSRDIAPDAVTFNIIV-SGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 262 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (783)
....+.+.+...+...... .+....+...+ ..+...+ -......|++++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A 221 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKS 221 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHH
Confidence 3333333333222222111 11111111111 0000000 0001112456677
Q ss_pred HHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 341 MEFFEDMFEKGISPSI-------FAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 341 ~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
..+|+++.+..+. +. .++..+...+...|++++|...|+++.+. .|+..++..+...+...|++++|...
T Consensus 222 ~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 222 TDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777664332 22 23445555556666666666666666654 23455555555666666666666666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
++++.+.... +..++..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +
T Consensus 299 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 299 FQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 6666554322 4455555555555555555555555555543322 33444444555555555555555555544432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMR 523 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (783)
.+...+..+...+...|++++|...++++.
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233344444444444444444444444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-20 Score=211.02 Aligned_cols=427 Identities=11% Similarity=0.017 Sum_probs=253.1
Q ss_pred CchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 039931 84 GRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFR 163 (783)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~ 163 (783)
+....++..+.......|.++.++..+..+|.+.|++++|++.|+++++.+ +.+..++..+...+...|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444444444567889999999999999999999999999999987 5678899999999999999999999996
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHH
Q 039931 164 DMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM--CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~ 241 (783)
.+...+.+.. ..+..+...+...+|...++++.+.. ..+........+..+....+.+.++ ..+..
T Consensus 118 -~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 185 (537)
T 3fp2_A 118 -VLSLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV-------SSVNT 185 (537)
T ss_dssp -HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH-------HTSCC
T ss_pred -HHhcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH-------HHHhh
Confidence 5444333222 23445566667788999999987642 1122233445555666555554431 11111
Q ss_pred HHHCCCCCChH-HHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 242 IQEEGLSPNVV-VYNALLNGYVKA--------RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 242 m~~~g~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
... ..+... ....+...+... |++++|..+|+++.+.... +...+..+..
T Consensus 186 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~------------------ 244 (537)
T 3fp2_A 186 SSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAAL------------------ 244 (537)
T ss_dssp CCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHH------------------
T ss_pred ccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHH------------------
Confidence 111 111111 233333333222 3677777777777765322 2222221111
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 039931 313 SVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC 392 (783)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 392 (783)
++..+...+...|++++|...|++..+. .|+..+|..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 245 ----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 311 (537)
T 3fp2_A 245 ----------ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP 311 (537)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH
Confidence 2223334455556666666666666554 2335556666666666666666666666665543 22455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 5666666666666666666666666665332 4456666666666677777777777666655332 4556666667777
Q ss_pred ccCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIG-----FVPNNFAYNSLIAGFCNR----------GKLNEALKLEREMRQKGLLPDNFTFNII 537 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~~~~p~~~~~~~l 537 (783)
..|++++|...|+++.+.. .......+......+... |++++|...|++..+..+. +...+..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 7777777777777665431 011112233344455555 7777777777777665432 56667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
...|.+.|++++|.+.|++..+.
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777777764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-15 Score=170.87 Aligned_cols=499 Identities=14% Similarity=0.135 Sum_probs=331.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH-HHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA-LLN 259 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~ 259 (783)
+...-+.+++.--+..++.-...| ..|..++|+|...|...++-.+. .+.+ |. -|.+ ++.
T Consensus 846 v~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~---------fL~~--------n~-~yd~~~vg 906 (1630)
T 1xi4_A 846 VAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER---------FLRE--------NP-YYDSRVVG 906 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH---------Hhhc--------cC-cccHHHHH
Confidence 333334445555555666666677 57888888888888877665443 1110 11 1111 223
Q ss_pred HHHhcCChhHHHHHHHH-----------------------HHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 039931 260 GYVKARDIDQANMLYEE-----------------------MRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSG 316 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~-----------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 316 (783)
-||...|+.-|.-.|++ +.++ -|...|..++.- +-+-=+++.+......
T Consensus 907 kyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~a 978 (1630)
T 1xi4_A 907 KYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTA 978 (1630)
T ss_pred HHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhh
Confidence 34444444444443332 1111 133344443310 1111122333322221
Q ss_pred C--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 039931 317 L--LPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGI--SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC 392 (783)
Q Consensus 317 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 392 (783)
+ ..++.--...+..|...|...+|++++++..-.+- .-+...-+.++....+. +..+..++..+.... +
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d-- 1051 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D-- 1051 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c--
Confidence 1 12333445677888899999999999999984321 12345566677777776 556666666665422 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
...+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.
T Consensus 1052 -~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1052 -APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence 3447778889999999999999852 12333343433 7789999999988662 5788999999999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 552 (783)
+.|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999999653 477888999999999999999999999888764 344444569999999999886443
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039931 553 AFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632 (783)
Q Consensus 553 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 632 (783)
+ ++ .|+...|..+...|...|++++|..+|... ..|..+..+|++.|++++|++.+++.
T Consensus 1189 f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 F----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred H----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 3 22 467778888999999999999999999985 36999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHH
Q 039931 633 VPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIM 711 (783)
Q Consensus 633 ~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 711 (783)
-+..+|..+-.++.. +.+..|...... +..+...+..++..|.+.|.+++|+.++++.+.+++. ....|.-|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHH
Confidence 355778776666553 667777665443 3345556778888999999999999999999999865 67788888
Q ss_pred HHHHhhhh-HHHHHHHHHHhcCCCcch-hhhHHH--Hhh-hhhhhhhhhhhhHHHhhh
Q 039931 712 DRAYHNIQ-ENAEFFQETSEKSLFLDF-LMGCMT--LNV-TGDFCVQSMKLQTAAIGR 764 (783)
Q Consensus 712 ~~~y~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~ 764 (783)
+..|++.. +...+.-++..+-+.+++ ...|.- +|. .--+|.+.++.+.|...-
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88887642 444444444444444443 333321 111 233555667777776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-18 Score=177.81 Aligned_cols=329 Identities=12% Similarity=0.055 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 039931 355 SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLD 434 (783)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 434 (783)
|+..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45566777777777788888888877777653 235667777777777777777777777777766432 5567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 039931 435 GYFRIGDLIGAQSLWNELNRRKIF--PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL 512 (783)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 512 (783)
.+...|++++|...|+++.+..+. .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665320 02223322211100 01122334566677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 513 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 592 (783)
++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++.
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777665433 56667777777777777777777777777642 335667777777777777777777777777
Q ss_pred HHCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHhh-ccHHH
Q 039931 593 YAGGLDPD-ITTYN------------IRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVT-----YNTLMNGVCC-DILDR 653 (783)
Q Consensus 593 ~~~g~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~li~~~~~-~~~~~ 653 (783)
.+. .|+ ...+. .+...+.+.|++++|...++++.+. .|+... +..+...+.. |++++
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 763 332 23222 3366788999999999999998873 344322 2223333333 88999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 654 AIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 654 A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
|...++++++. .| +..+|..+...|.+.|++++|...++++.+++|+ +..++..+..++..
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 99999998884 45 5678888999999999999999999999999987 78888888777543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-17 Score=173.57 Aligned_cols=330 Identities=12% Similarity=-0.013 Sum_probs=233.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
++..+..+...+.+.|++++|+..|+++++.+ +.+..++..+...+...|++++|+..|+++++..| .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 45678889999999999999999999999876 56788999999999999999999999999999865 57788999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCC----CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVA----DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
.+...|++++|...++++.+.. | +...+..+...+. ...+..+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------------------~~~~~~~a 127 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------------------MQRLRSQA 127 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------------------HHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------------------HHHHHHHH
Confidence 9999999999999999998764 4 3333333321100 11233445
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (783)
..+...|++++|++.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 556666677777777766665532 255566666666666777777777776666553 234556666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFN------------SIIAAYSRAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLC 402 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~ 402 (783)
+|...|++..+..+. +...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+.
T Consensus 206 ~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 777777776664332 233222 2356677888888888888887775322 22 22445667778
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 403 KKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
..|++++|...+++..+.. +.+..++..+...+.+.|++++|.+.|++..+..+. +...+..+..+..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 8888888888888887763 336777888888888888888888888888776443 4555666555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-16 Score=170.32 Aligned_cols=383 Identities=14% Similarity=0.047 Sum_probs=279.7
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 039931 320 NCTLYDITVAGLCW----AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR----AGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 320 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555655 677777777777777653 55667777777777 777888888887777754 55
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 039931 392 CTCSSLLVGLCK----KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNELNRRKIFPDAVA 463 (783)
Q Consensus 392 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 463 (783)
..+..+...|.. .+++++|...|++..+.| ++..+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 566667777776 677888888888777765 55667777777776 678888888888877764 6677
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039931 464 FSAYINGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN----RGKLNEALKLEREMRQKGLLPDNFTFN 535 (783)
Q Consensus 464 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~ 535 (783)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| ++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777776 788888888888887754 56667777777775 778888888888887764 456666
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 536 IIINGFCK----QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDPDITTYNI 606 (783)
Q Consensus 536 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ 606 (783)
.+...|.. .++.++|++.|++..+.| +...+..+...|... +++++|...+++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 788889999988887654 456777777777776 88999999999888753 5567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039931 607 RMHGYCNIR---KMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-----DILDRAIIIAAKLLKMAFVPNVVTTNVLLS 678 (783)
Q Consensus 607 li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 678 (783)
+...|...| ++++|++.|++..+.| +...+..+-..+.. ++.++|...+++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7888999999888764 45555555555543 58899999999988865 4667777888
Q ss_pred HHHh----cCChhhHHHHHHHHhhcCCC-C-CHHHHHHHHHHHhh-hhHHHHHHHHHHhcC
Q 039931 679 HFCK----QGMPEKTLLWGQKLSEISFD-F-DETSYKIMDRAYHN-IQENAEFFQETSEKS 732 (783)
Q Consensus 679 ~~~~----~g~~~~A~~~~~~~~~~~~~-~-d~~~~~~l~~~y~~-~~~~~~~~~~~~~~~ 732 (783)
.|.+ .+++++|..+++++.+.+++ | ++.+...|+..+.. ...+.+.++++++++
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 8887 89999999999999998853 1 45566666655432 234444566666663
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-15 Score=166.08 Aligned_cols=362 Identities=14% Similarity=0.039 Sum_probs=261.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCChhHHHHH
Q 039931 237 MIFDMIQEEGLSPNVVVYNALLNGYVK----ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK----YGGMEDGDRL 308 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~ 308 (783)
..+....+. -+..++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.
T Consensus 28 ~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 28 EQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 344444443 377778888888887 788999999999888764 56677777777777 7888888888
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 039931 309 LRDLSVSGLLPNCTLYDITVAGLCW----AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR----AGLEENAFEAYK 380 (783)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 380 (783)
|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88887765 45566667777776 678888888888887764 56677777777776 678888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 039931 381 IMHQFGLTPSSCTCSSLLVGLCK----KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNEL 452 (783)
Q Consensus 381 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 452 (783)
+..+.| +...+..+...|.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 887764 56677777777776 778888888888877764 45667777777775 67888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 039931 453 NRRKIFPDAVAFSAYINGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNR-----GKLNEALKLEREMR 523 (783)
Q Consensus 453 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~ 523 (783)
.+.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... +++++|...+++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 7653 45566666666666 677888888888777654 455666666666665 77788888877777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 039931 524 QKGLLPDNFTFNIIINGFCKQG---RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADELVNKMYAGG 596 (783)
Q Consensus 524 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 596 (783)
+.| +...+..+...|...| ++++|.+.|++..+. .+...+..|...|.. .+++++|.+.+++..+.|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 764 4456666666666655 677777777777764 356677777777777 677777777777777643
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 039931 597 LDPDITTYNIRMHGYCN----IRKMNQAAMMLDELVSAG 631 (783)
Q Consensus 597 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 631 (783)
+...+..|...|.+ .+++++|...|++..+.+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 46666777777776 677777777777777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-14 Score=163.22 Aligned_cols=376 Identities=12% Similarity=0.060 Sum_probs=281.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDI--APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
...+..|...|.+.+|++++++..-.+- .-+...-+.++....+. +..+..++..+.... ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4566778888999999999998874311 11233444566555555 445555555554321 1233566778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999998632 2233333333 6788999999888652 56789999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF 492 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 492 (783)
.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.... .+
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 99663 378888999999999999999999999887764 3433444588999999998854333 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 039931 493 VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTL 572 (783)
Q Consensus 493 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 572 (783)
.++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 367777888999999999999999999984 38999999999999999999999876 356899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh---
Q 039931 573 IGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC--- 648 (783)
Q Consensus 573 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~--- 648 (783)
-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+. +.|.. ..|+-+...+++
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCH
Confidence 99999999999999876643 35667777999999999999999999988764 33433 345555555554
Q ss_pred ccHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChhhHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVP------NVVTTNVLLSHFCKQGMPEKTLL 691 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p------~~~~~~~ll~~~~~~g~~~~A~~ 691 (783)
+++.+++++|..-.. +.| +...|.-++-.|.+.|+++.|..
T Consensus 1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 677788888875433 333 45679999999999999999983
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-16 Score=172.24 Aligned_cols=430 Identities=11% Similarity=0.035 Sum_probs=276.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 039931 128 YRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVA 207 (783)
Q Consensus 128 ~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 207 (783)
++.++.+ +-+..+|..++. +.+.|++++|..+|+++++..| .+...|...+..+.+.|++++|..+|+++++.. |
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 3444433 345666666666 3566677777777777766543 455566666776777777777777777776542 4
Q ss_pred CHHhHHHHHHHH-HhcCCcchHhhhccchHHHHHHHHH-CCCCC-ChHHHHHHHHHHHh---------cCChhHHHHHHH
Q 039931 208 DFFAYNILINAY-CIRGQTSYALGKCGAGRMIFDMIQE-EGLSP-NVVVYNALLNGYVK---------ARDIDQANMLYE 275 (783)
Q Consensus 208 ~~~~~~~li~~~-~~~g~~~~A~~~~~~a~~~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~ 275 (783)
++..|...+... ...|+.++|.+ .++++|+.... .|..| +...|...+....+ .|+++.|..+|+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~---~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKE---KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHH---HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHccchhhHHH---HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 555565555422 34466665531 12345555543 24443 46778888877655 788999999999
Q ss_pred HHHhCCCCCCH---hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 039931 276 EMRSRDIAPDA---VTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDM----- 347 (783)
Q Consensus 276 ~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 347 (783)
+.++. |+. ..|..........|. ..+.. ++. .+.+++..|..++.++
T Consensus 155 ~al~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 155 RGCVN---PMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp HHTTS---CCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---hhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHH
Confidence 99873 332 233322221100110 00111 110 0234455566555542
Q ss_pred -HHCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 039931 348 -FEKG---ISPS--------IFAFNSIIAAYSRA----GLE----ENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK---- 403 (783)
Q Consensus 348 -~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 403 (783)
.+.. +.|+ ...|...+...... ++. +.+..+|++..... +-+...|...+..+.+
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence 2211 2333 24555555433322 222 46778888887753 3366777777777765
Q ss_pred ---cCChh-------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 039931 404 ---KGRLP-------EAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA-VAFSAYINGLS 472 (783)
Q Consensus 404 ---~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~ 472 (783)
.|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+..+. +. ..|..++..+.
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFAR 367 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHH
Confidence 68876 88999998886323446888888999999999999999999998886332 33 57888888888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-FCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAI 551 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 551 (783)
+.|+.++|.++|++..+.. +.+...|...... +...|+.++|..+|+...+..+. ++..|..++..+.+.|+.++|.
T Consensus 368 ~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHH
Confidence 8999999999999988752 2233333332222 33689999999999988876432 6788899999999999999999
Q ss_pred HHHHHHHHcC-CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 552 DAFMDMYRTG-LVPD--IVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 552 ~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+|++.+..+ ..|+ ...|...+......|+.+.+.++.+++.+
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998863 2232 34788888888889999999999998887
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-17 Score=172.08 Aligned_cols=288 Identities=11% Similarity=-0.019 Sum_probs=210.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039931 423 PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSL 502 (783)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 502 (783)
+.+...+..+...+...|++++|.++|+++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 335556666777777777777777777777665433 44555566667777777777777777777643 3356677777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 039931 503 IAGFCNRG-KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD 581 (783)
Q Consensus 503 i~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 581 (783)
...+...| ++++|...|++..+.... +...|..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777788 788888888887776433 56677788888888888888888888887753 2345667778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhh-ccHH
Q 039931 582 IVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAG--------IVPNTVTYNTLMNGVCC-DILD 652 (783)
Q Consensus 582 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~~~li~~~~~-~~~~ 652 (783)
+++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+.. ...+...+..+...+.. |+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888732 3356778888888888888888888888887521 02223566666655554 7888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 653 RAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 653 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
+|...++++++.. +.+...|..+...|.+.|++++|..+++++.++.|+ +..++..++..+..
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHH
Confidence 8888888887743 224577888888999999999999999999999987 88888888888743
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-15 Score=168.70 Aligned_cols=429 Identities=9% Similarity=-0.031 Sum_probs=302.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHH
Q 039931 162 FRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~ 241 (783)
|++.++..| .+..+|..++. +.+.|++++|..+|+++.+.- +.+...|..++..+.+.|++++| +.+|++
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a-------~~~~~r 71 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKV-------EKLFQR 71 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHH
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHH-------HHHHHH
Confidence 455666655 57888988888 478899999999999998763 55677899999999999999888 678888
Q ss_pred HHHCCCCCChHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCCC-CHhHHHHHHHHHHc---------cCChhHH
Q 039931 242 IQEEGLSPNVVVYNALLNGY-VKARDIDQANM----LYEEMRSR-DIAP-DAVTFNIIVSGHCK---------YGGMEDG 305 (783)
Q Consensus 242 m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~t~~~ll~~~~~---------~g~~~~A 305 (783)
.... .|++..|..++... ...|++++|.+ +|++.... |..| +...|...+....+ .|+++.|
T Consensus 72 al~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 72 CLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp HTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred HHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 8765 36777888877533 45677777765 67766543 5444 34566666665443 5677788
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Q 039931 306 DRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIM--- 382 (783)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 382 (783)
..+|++.++.........|..........|. ..+. .++. .+.+++..|..+++.+
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~ 207 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETV 207 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHH
Confidence 8888887763111111222222111000110 0111 1111 1234567777766653
Q ss_pred ---HhCC---CCCC--------HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--
Q 039931 383 ---HQFG---LTPS--------SCTCSSLLVGLCKK----GRL----PEAWDLLCKMIEKGFPINKVAFTVLLDGYFR-- 438 (783)
Q Consensus 383 ---~~~~---~~p~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 438 (783)
.+.. ++|+ ...|...+...... ++. +.+..+|++.+... +.++..|..++..+.+
T Consensus 208 ~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 208 MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 2221 2444 24566555443332 232 47788999998873 4478899999888876
Q ss_pred -----cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHH
Q 039931 439 -----IGDLI-------GAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN-N-FAYNSLIA 504 (783)
Q Consensus 439 -----~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~ 504 (783)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+.
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHH
Confidence 79987 99999999987322236889999999999999999999999999985 454 3 57888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 505 GFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIING-FCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 505 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
.+.+.|++++|.++|++..+.... +...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.+
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~ 442 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 442 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHh
Confidence 889999999999999999986332 33333332222 346899999999999998752 336789999999999999999
Q ss_pred HHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 584 RADELVNKMYAGG-LDPD--ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 584 ~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+|..+|++.+..+ ..|+ ...|...+......|+.+.+..+++++.+
T Consensus 443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999853 2332 45788888888999999999999999986
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-17 Score=168.53 Aligned_cols=288 Identities=10% Similarity=-0.003 Sum_probs=214.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.+.++.++..++..+...|++++|+.+|+++++.+ +.+...+..++..+...|++++|..+++++++..+ .+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34556678888889999999999999999998876 45666777788888999999999999999998765 56778888
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 180 LILGFCRNG-CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 180 l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
+...+...| ++++|...|+++.+.. +.+..++..+...+...|++++| ...+++..+... .+..++..+.
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A-------~~~~~~a~~~~~-~~~~~~~~l~ 166 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQA-------MAAYFTAAQLMK-GCHLPMLYIG 166 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHH-------HHHHHHHHHHTT-TCSHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHH-------HHHHHHHHHhcc-ccHHHHHHHH
Confidence 899999999 8999999999998765 45577888888888888998888 456666655432 2456777788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC--------CCcHHHHHHHHHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL--------LPNCTLYDITVAG 330 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~ 330 (783)
..|...|++++|.+.|++..+... .+..++..+...+...|++++|...++++.+... .....++..+...
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 888888999999999988887643 3567777777888888888888888877765321 2234566677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
+...|++++|...|++..+..+. +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 77777777777777777765433 56667777777777777777777777766643 22445555555555
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-16 Score=169.29 Aligned_cols=144 Identities=13% Similarity=-0.059 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI--TTYNIRMH-GYCNIRKMNQAAMM 623 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~~A~~~ 623 (783)
.++|...+++..+.. +.+..++..+...|...|++++|++.|++.++....|.. ..+..+.. .+...|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455666666665542 234455666666666667777777777666653222211 11222222 23455666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 624 LDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 624 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
|++.++ +.|+..... +..+.+.+++++.++.. +.+..+|..+...|...|++++|++.+++++++++.
T Consensus 395 y~kal~--i~~~~~~~~--------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 395 FIEGVK--INQKSREKE--------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHH--SCCCCHHHH--------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHh--cCcccHHHH--------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 666665 344432221 12223334444444321 123455666666666666666666666666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-17 Score=169.79 Aligned_cols=302 Identities=12% Similarity=-0.022 Sum_probs=174.7
Q ss_pred cCChhHHHH-HHHHHHhCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 039931 299 YGGMEDGDR-LLRDLSVSGLL---PNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 299 ~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 374 (783)
.|++++|.+ .+++....... .+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 355666665 55544433211 12344555666666777777777777777665433 56666667777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 375 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h--
Confidence 777777766653 235566666666677777777777777766665332 22221111000 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT 533 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 533 (783)
.. ....+.. +..+...|++++|...|+++.+.... ++..++..+...+.+.|++++|...++++.+..+. +..+
T Consensus 179 --~~-~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~ 253 (368)
T 1fch_A 179 --AG-LGPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLL 253 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred --hc-ccHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHH
Confidence 00 0001111 22222666777777777776654311 03566677777777777777777777776665322 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------CH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP------------DI 601 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~ 601 (783)
+..+...+.+.|++++|...|+++++.. +.+..++..+...|.+.|++++|...++++.+. .| ..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhh
Confidence 7777777777777777777777777642 234667777777777777777777777777652 12 15
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 602 TTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 602 ~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
.+|..+..+|...|++++|..++++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 67777778888888888777776543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-17 Score=171.20 Aligned_cols=302 Identities=12% Similarity=-0.043 Sum_probs=192.1
Q ss_pred cCCHHHHHH-HHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 334 AGRLDEAME-FFEDMFEKGIS---PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 334 ~g~~~~A~~-~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
.|++++|.. .|++....... .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455666665 55544432111 123445566666666666666666666666553 2245555666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
|...++++.+.... +..++..+...+...|++++|.+.++++.+..+. +...+..+... .. .
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h--
Confidence 66666666655322 5555556666666666666666666665554322 11111100000 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT 568 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 568 (783)
..+. ..+.. +..+...|++++|...++++.+..+.. +..++..+...|.+.|++++|...|+++++.. +.+..+
T Consensus 179 --~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 179 --AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 0000 11112 233348899999999999998874332 58899999999999999999999999999863 346789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-------CHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIV---P-------NTVT 638 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-------~~~~ 638 (783)
|..+...+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++++.... | ....
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 9999999999999999999999998842 336788999999999999999999999999862111 1 1467
Q ss_pred HHHHHHHHhh-ccHHHHHHHHHH
Q 039931 639 YNTLMNGVCC-DILDRAIIIAAK 660 (783)
Q Consensus 639 ~~~li~~~~~-~~~~~A~~~~~~ 660 (783)
|..+...+.. |+.++|..++++
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCChHhHHHhHHH
Confidence 8777777765 788888887765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=169.29 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=119.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 116 RVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
+.|+.++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4577888888888872 2358889999999999999999988653 567788888888888999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 039931 196 LLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYE 275 (783)
Q Consensus 196 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 275 (783)
.++...+. .+++.+.+.++.+|.+.|+++++.+ +++ .|+..+|+.+...|...|++++|...|.
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~-------f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEE-------FIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ----------------------------CHHHHTT-------TTT-------CC----------------CTTTHHHHHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHH-------HHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777664 4667788888999999888887743 332 2677789999999999999999999998
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 276 EMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS 355 (783)
Q Consensus 276 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 355 (783)
.+ ..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. . .
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--H 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--C
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--C
Confidence 66 37888888888888888888888887 267888888888888888888866555432 2 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCC------CHh
Q 039931 356 IFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK--GRLPEAWDLLCKMIEKGFPI------NKV 427 (783)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~ 427 (783)
+.-...++..|.+.|++++|+.+++...... ......|+-+...|++- +++.+.++.|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 3335568888888889999988888887654 44566677776666654 233344443321 112222 355
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 039931 428 AFTVLLDGYFRIGDLIGAQSL 448 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~ 448 (783)
.|..+...|...++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 677888888888888877653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-15 Score=164.97 Aligned_cols=387 Identities=13% Similarity=-0.050 Sum_probs=215.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 039931 319 PNCTLYDITVAGLCWAGRLDEAMEFFEDMFEK-----G---ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF----- 385 (783)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 385 (783)
.....||.|...+...|++++|++.|++..+. + -.....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777777778888888777776542 0 1113556777777777777777777777766432
Q ss_pred C-CC-CCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCC
Q 039931 386 G-LT-PSSCTCSSLLVGLCK--KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGY---FRIGDLIGAQSLWNELNRRKIF 458 (783)
Q Consensus 386 ~-~~-p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~ 458 (783)
+ .. ....++..+..++.. .+++++|+..|++.++..+. ++..+..+...+ ...++.++|++.+++..+..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 0 01 123344444444433 33566777777776665433 444444444432 3345556666666666554332
Q ss_pred CCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 459 PDAVAFSAYINGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 459 p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
+...+..+...+.. .++.++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 34444444433332 345556666666655542 334555666666666666666666666666655332 44455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
..+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 554444422111000 000 0000001112234678888888888732 23457788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH--HHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 039931 615 RKMNQAAMMLDELVSAGIVPNTV--TYNTLMN--GVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTL 690 (783)
Q Consensus 615 g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 690 (783)
|++++|...|++.++....|... .+..+.. .+..+..++|+..+++.++ +.|+...+.. ..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHH
Confidence 99999999999999854433321 1222211 1224789999999999998 6677544322 234556
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhh
Q 039931 691 LWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLM 739 (783)
Q Consensus 691 ~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 739 (783)
+++++.++.+|. ++.+|..|+.+|.. .++++.|.+.+++++++.+..
T Consensus 417 ~~~~~~l~~~p~-~~~~~~~LG~~~~~-~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 417 KIAKMRLSKNGA-DSEALHVLAFLQEL-NEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHH-HHHCC----------------
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Confidence 677888888987 88999999999865 688888999999999876543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=163.23 Aligned_cols=379 Identities=11% Similarity=0.125 Sum_probs=140.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039931 298 KYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFE 377 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 377 (783)
+.|++++|.+.++++ ++..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344555555555554 12235555555566666666666666432 255566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 039931 378 AYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI 457 (783)
Q Consensus 378 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 457 (783)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55554442 2345556666666666666666655553 245556666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 458 FPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNII 537 (783)
Q Consensus 458 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 537 (783)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 24666666666666666666666665 2556666666666666666666443332 11233334456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA-GGLDP------DITTYNIRMHG 610 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p------~~~~~~~li~~ 610 (783)
+..|.+.|++++|..+++..+... +-....|+-|.-+|++- ++++..+.++...+ -+++| +...|.-+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 666777777777777776666432 23455566665555543 23333333332222 12222 23456677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhh-ccHHHHHHHHH-----------HHHHcCCCCCHHHHHHHH
Q 039931 611 YCNIRKMNQAAMMLDELVSAG-IVPNTVTYNTLMNGVCC-DILDRAIIIAA-----------KLLKMAFVPNVVTTNVLL 677 (783)
Q Consensus 611 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~-~~~~~A~~~~~-----------~~~~~~~~p~~~~~~~ll 677 (783)
|.+.++++.|... |.+.. ..-+...|--+|.-... +.+-+|+.++- ..+...+. .+..+
T Consensus 292 y~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld-----~~r~v 363 (449)
T 1b89_A 292 YDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLD-----HTRAV 363 (449)
T ss_dssp HHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCC-----HHHHH
T ss_pred HHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-----cHHHH
Confidence 7777777777653 33321 11122222222211110 12223333221 11111122 24455
Q ss_pred HHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhc
Q 039931 678 SHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEK 731 (783)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~ 731 (783)
..+.+.|++.-...+++.+.+.+ +..+-..|-+.|-. .++++..|..++.
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ie-eed~~~lr~si~~ 413 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFIT-EEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 56678888888888887776544 34444444444433 5777777777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=189.42 Aligned_cols=136 Identities=11% Similarity=0.122 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMY---RTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNI 606 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 606 (783)
-..|||++|++||+.|++++|.++|.+|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45678888888888888888888887765 347888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCC
Q 039931 607 RMHGYCNIRKM-NQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPN 669 (783)
Q Consensus 607 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~ 669 (783)
+|+++|+.|+. ++|.++|++|.+.|+.||.+||++++.+.. .+..++..+++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e---R~~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED---RATVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH---HHHHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh---HHHHHHHHHHh-CcccCCC
Confidence 88888888874 678888888888888888888888876532 23333444444 3344443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-16 Score=165.18 Aligned_cols=271 Identities=11% Similarity=-0.047 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK 403 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 403 (783)
+..+...+.+.|++++|...|+++.+..+. +..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 444444455555555555555555443222 34444444455555555555555554444432 1133444444444444
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
.|++++|...++++.+.... +...+..+. .....+..+...+...|++++|...
T Consensus 146 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 44444444444444433110 011110000 0122334456667777777777777
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039931 484 FLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562 (783)
Q Consensus 484 ~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 562 (783)
|+++.+.... ++..++..+...+...|++++|...++++.+..+. +..+|..+...|.+.|++++|...|+++++..
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 7777665311 14667777777777777777777777777665433 56677777777777777777777777777642
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 563 VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-------------DITTYNIRMHGYCNIRKMNQAAMMLDE 626 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 626 (783)
+.+..+|..+...|...|++++|...++++.+. .| +..+|..+..++...|+.+.+..+.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 224667777777777777777777777777652 12 245677777777777777776665543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-16 Score=163.60 Aligned_cols=276 Identities=11% Similarity=-0.044 Sum_probs=195.1
Q ss_pred CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 285 DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIA 364 (783)
Q Consensus 285 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 364 (783)
+...+..+...+.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...|+++.+..+. +..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 456688899999999999999999999998753 36788999999999999999999999999987544 6889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 365 AYSRAGLEENAFEAYKIMHQFGLTPSSC-TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
.|...|++++|+..|+++.+.. |+.. .+..+. .....+..+...+.+.|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 9999999999999999998753 3321 121110 12233444555566666666
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 444 GAQSLWNELNRRKIF-PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 444 ~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
+|...++++.+..+. ++..++..+...+...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666554322 145666666777777777777777777766642 345667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL-----------VPDIVTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.+..+. +..++..+...|.+.|++++|...|+++++... ..+..+|..+..++...|+.+.+.++..+
T Consensus 274 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 765333 577777788888888888888888887775310 01357788888999999999888877654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=185.66 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSR---IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNI 536 (783)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 536 (783)
-..+||++|++||+.|++++|.++|.+|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 039931 537 IINGFCKQGRM-KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD------ITTYNIRMH 609 (783)
Q Consensus 537 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~ 609 (783)
+|+++|+.|+. ++|.++|++|.+.|+.||.++|++++.++.+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999998875 68889999999999999999999888776554 344444444 2345554 344455556
Q ss_pred HHHhcC
Q 039931 610 GYCNIR 615 (783)
Q Consensus 610 ~~~~~g 615 (783)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-15 Score=155.45 Aligned_cols=275 Identities=11% Similarity=-0.029 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLC 402 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 402 (783)
.+..+...+...|++++|..+|+++.+..+. +..++..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444555566666666666666666554332 45555556666666666666666666655542 224445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCChHHH
Q 039931 403 KKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYIN--GLSKAGLVDEA 480 (783)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A 480 (783)
..|++++|.+.++++.+.... +...+..+... .|+......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 566666666665555554222 12222111000 001111111212 26667778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 481 YGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 481 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
...++++.+.. +.+..++..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888877653 346677777888888888888888888887776433 5777888888888888888888888888775
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-------------ITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
. +.+..++..+...|...|++++|.+.++++.+. .|+ ..+|..+..++.+.|++++|..++++.
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 335677888888888888888888888887763 333 567788888888888888888877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=156.34 Aligned_cols=281 Identities=7% Similarity=-0.104 Sum_probs=198.7
Q ss_pred CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 285 DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIA 364 (783)
Q Consensus 285 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 364 (783)
+...+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...|+++.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 445577788889999999999999999988654 36778888999999999999999999999987543 7888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH--HHHhcCCH
Q 039931 365 AYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLD--GYFRIGDL 442 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 442 (783)
.+...|++++|.+.++++.+.... +...+..+...+ |+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999986422 223333221110 01111112212 24556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777666655433 56667777777777777777777777776643 345667777777777888888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-----------DIVTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.+.... +..++..+...+.+.|++++|.+.++++.+..... +..+|..+..++.+.|++++|..++++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 765432 56777778888888888888888888877642111 366788888888888888888887765
Q ss_pred HH
Q 039931 592 MY 593 (783)
Q Consensus 592 m~ 593 (783)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-15 Score=148.24 Aligned_cols=250 Identities=12% Similarity=0.025 Sum_probs=127.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
....|++..|+..+++.....+.+.......+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666665544331111122334455666666666666654433 1 234455555556666666666666
Q ss_pred HHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 411 WDLLCKMIEKGF-PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
++.++++...+. +-+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666655542 22444555555566666666666666554 23455555555666666666666666666555
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039931 490 IGFVPNNFAY---NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566 (783)
Q Consensus 490 ~~~~p~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 566 (783)
.. |+.... ..++..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|...|+++++.. +-+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 42 332211 111222233355555555555555542 2245555555555555555555555555555431 1234
Q ss_pred hHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVR-ADELVNKMYA 594 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 594 (783)
.++..++..+...|+.++ +.++++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455555555555555543 3455555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=146.14 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=133.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP-SSCTCSSLLVGLCKK 404 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 404 (783)
.+...|...|++++|...++.. -.|+..++..+...+...++.++|++.++++...+..| +...+..+...+...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 3444555555555555444321 23345555555555555556666666666655544333 233344444555666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCChHHHH
Q 039931 405 GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVA---FSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~ 481 (783)
|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.+.. |+... ...++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 666666665554 2355566666666666666666666666665543 22211 112233344557777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP-AIDAFMDMYRT 560 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 560 (783)
.+|+++.+. .+.+...++.+..++.+.|++++|...|++..+..+. ++.++..++..+...|+.++ +.++++++.+.
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777765 3556677777777777778888888877777766443 66777777777777777765 45777777764
Q ss_pred CCCCCh
Q 039931 561 GLVPDI 566 (783)
Q Consensus 561 g~~p~~ 566 (783)
.|+.
T Consensus 265 --~P~~ 268 (291)
T 3mkr_A 265 --HRSH 268 (291)
T ss_dssp --CTTC
T ss_pred --CCCC
Confidence 4543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-13 Score=142.25 Aligned_cols=318 Identities=14% Similarity=-0.049 Sum_probs=175.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDY---GSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
.+...+.+.|++++|.+.|++..+.| +..++..|...|...|+. ++|+..|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677888999999999999998876 334556677777778888 8999999999753 5666777777666
Q ss_pred hcC-----ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 186 RNG-----CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 186 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
..| ++++|...|++..+.|. + ..+..|...|...+..+++ ..+.+.+....+.| +...+..|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~----~~a~~~~~~a~~~g---~~~a~~~Lg~~ 150 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPN----VNAQQQISQWQAAG---YPEAGLAQVLL 150 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTT----CCHHHHHHHHHHHT---CTTHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 555 78899999999988763 3 3777788888877766655 23345555555443 45677778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC---ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc---
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYG---GMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA--- 334 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 334 (783)
|...+.++++........+.-...++..+..+...|...| +.++|.+.|++..+.|.. +...+..+...|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCC
Confidence 8888766555554333322211223336666666666677 667777777777666533 333333444444333
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----
Q 039931 335 -GRLDEAMEFFEDMFEKGISPSIFAFNSIIAA-Y--SRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKG----- 405 (783)
Q Consensus 335 -g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 405 (783)
+++++|...|++.. . -+...+..|... + ...+++++|+++|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 56666666666665 2 244455555554 2 34566666666666666554 4444555555554 33
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 039931 406 RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNELNRRK 456 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 456 (783)
++++|...|++.. .| ++..+..|...|.. ..++++|...|++..+.|
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 5556666555554 22 44444444444443 225555555555554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-13 Score=132.29 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 039931 509 RGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADEL 588 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 588 (783)
.|++++|...++++....+. +...+..+...+...|++++|...++++.+.. +.+..+|..+...|...|++++|.+.
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445555555544443211 33444455555555555555555555555432 22345555555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 589 VNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 589 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+++..+.. +.+...|..+..++.+.|++++|...+++.++
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555421 22345555555555555666666555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-13 Score=131.74 Aligned_cols=199 Identities=13% Similarity=0.008 Sum_probs=140.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
|.++..+..+...+.+.|++++|+..|+++++.+ +.+...+..+...+.+.|++++|+..|++.++..| .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4556778888888999999999999999988876 56788888888999999999999999999988876 567788888
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 181 ILGFCRN-----------GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 181 ~~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
...+... |++++|+..+++..+.. +.+...+..+...|...|++++| ...|++..+.. .
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A-------~~~~~~al~~~--~ 149 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA-------EASLKQALALE--D 149 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHC--C
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH-------HHHHHHHHhcc--c
Confidence 8888888 88888888888877654 34566777777777777777777 34555555544 4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
+...+..+...|...|++++|+..|++..+..+. +...+..+...+...|++++|...+++.
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6777777777777777777777777777765332 5566666667777777777776666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-13 Score=144.36 Aligned_cols=346 Identities=11% Similarity=0.021 Sum_probs=178.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCh---hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGM---EDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
+...+.+.|++++|.++|++..+.|. ...+..+...+...|+. ++|.+.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 55667778888888888888877652 33344444555556666 7777777777654 33444445553444
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039931 334 AG-----RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEE---NAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKG 405 (783)
Q Consensus 334 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 405 (783)
.+ +.++|...|++..+.|.. ..+..|...|...+..+ ++.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 667777777777775433 25556666666554432 3444444444433 2334555566666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----CChH
Q 039931 406 RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIG---DLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKA----GLVD 478 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~ 478 (783)
.++++......+.+.-...++..+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 55444444333332222223346666666666666 667777777776666543 444444555555433 5666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHH
Q 039931 479 EAYGVFLEMSRIGFVPNNFAYNSLIAG-F--CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQG-----RMKPA 550 (783)
Q Consensus 479 ~A~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 550 (783)
+|+..|++.. . -+...+..+... + ...+++++|.+.|++..+.| ++..+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777776665 2 234444444444 2 34566667777776666654 4555555555554 44 66666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN----IRKMNQAAM 622 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 622 (783)
.+.|++.. . -+...+..|...|.. ..++++|.+.|++..+.| +......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 66666655 2 244555555555544 236666666666666544 22233444444443 345666666
Q ss_pred HHHHHHHCC
Q 039931 623 MLDELVSAG 631 (783)
Q Consensus 623 ~~~~m~~~g 631 (783)
.|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 666665554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-13 Score=131.22 Aligned_cols=222 Identities=15% Similarity=0.063 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT--PS----SCTCSSL 397 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~l 397 (783)
+..+...+...|++++|...|++..+.. .+...|..+...+...|++++|++.+++..+.... ++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444555555555555555555543 34455555555555555555555555554432100 01 2344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
...+...|++++|...+++..+.. |+. ..+.+.|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------~~~-------~~~~~~~~~ 121 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH-------------------------------------RTA-------DILTKLRNA 121 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------CCH-------HHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-------------------------------------chh-------HHHHHHhHH
Confidence 444444444444444444444432 111 123333444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
++|...++++.... +.+...+..+...+...|++++|...+++..+.... +..++..+...+.+.|++++|...++++
T Consensus 122 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444444444421 112334444445555555555555555555444322 4455555555555555555555555555
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 558 YRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
++.. +.+..+|..+...+.+.|++++|.+.+++..+
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5432 22344555555555555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-12 Score=136.25 Aligned_cols=249 Identities=13% Similarity=-0.045 Sum_probs=193.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGD-YGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
+..+|..+...+.+.|++++|+..|+++++.+ +.+..+|+.+...+.+.|+ +++|+..|+++++..| .+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 35688999999999999999999999999987 5678899999999999997 9999999999999876 6788999999
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHH
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGY 261 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 261 (783)
.++...|++++|+..|+++++.. +.+..+|..+..++.+.|++++| ...++++.+.... +..+|+.+...+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eA-------l~~~~~al~l~P~-~~~a~~~lg~~l 244 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNE-------LQYVDQLLKEDVR-NNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH-------HHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHH-------HHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999999999999875 56788999999999999999988 4667777665443 778899999999
Q ss_pred Hh-cCChhHH-----HHHHHHHHhCCCCCCHhHHHHHHHHHHccC--ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 262 VK-ARDIDQA-----NMLYEEMRSRDIAPDAVTFNIIVSGHCKYG--GMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 262 ~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
.+ .|..++| ++.|++.++.... +...|..+...+...| +.++|.+.+.++ +. ...+...+..+...|.+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHH
Confidence 88 6665777 4788888776433 5667777777777777 577777777776 22 23355666777777776
Q ss_pred cC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 039931 334 AG---------RLDEAMEFFEDM-FEKGISPSIFAFNSIIAAY 366 (783)
Q Consensus 334 ~g---------~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~ 366 (783)
.| .+++|.++|+++ .+..+. ....|..+...+
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 53 247777777777 554221 334455544443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-13 Score=128.31 Aligned_cols=196 Identities=14% Similarity=-0.014 Sum_probs=106.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIA 504 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 504 (783)
+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444445555555555555555555555544332 44455555555555555555555555555432 223444555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 505 GFCNR-----------GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 505 ~~~~~-----------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
.+... |++++|...+++..+..+. +...+..+...+...|++++|+..|++.++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 6666777666666665333 45666666666677777777777777766654 5566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
..|...|++++|+..+++..+. .| +...+..+...+...|++++|+..+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6777777777777777776652 34 4566666666777777777776666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-10 Score=128.12 Aligned_cols=459 Identities=12% Similarity=0.041 Sum_probs=286.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---hhhHHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC---IRIGESL 196 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 196 (783)
..+-+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++..-| .....|..-+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455556655555 46777788888777777777778888888777643 556667777777777777 7888888
Q ss_pred HHHHHhCC-CCCCHHhHHHHHHHHHhcCCc----chHhhhccchHHHHHHHHH-CCC-CCC-hHHHHHHHHHHH------
Q 039931 197 LHVMHKYM-CVADFFAYNILINAYCIRGQT----SYALGKCGAGRMIFDMIQE-EGL-SPN-VVVYNALLNGYV------ 262 (783)
Q Consensus 197 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~a~~~~~~m~~-~g~-~p~-~~~~~~li~~~~------ 262 (783)
|++.+... .+|++..|...+....+.++. +++. +..+++|+.... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r---~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEAR---NIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHH---HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhH---HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 88877653 136777777776665555544 2221 122567776554 365 454 468888887654
Q ss_pred ---hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH
Q 039931 263 ---KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE 339 (783)
Q Consensus 263 ---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (783)
..++++.+..+|++.+......-..+|......--..+ ...+..++.+. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHH
Confidence 24457889999999986311111233332222111101 11122222111 112223
Q ss_pred HHHHHHHHHH--CCCC---------------C--C------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCC
Q 039931 340 AMEFFEDMFE--KGIS---------------P--S------IFAFNSIIAAYSRAG-------LEENAFEAYKIMHQFGL 387 (783)
Q Consensus 340 A~~~~~~m~~--~g~~---------------p--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~ 387 (783)
|...+.++.. .++. | + ...|...+.---..+ ..+.+..+|++.....
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 3333333221 0110 0 0 133444444332222 1234566777777652
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------C
Q 039931 388 TPSSCTCSSLLVGLCKKGRLPEAW-DLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK---------I 457 (783)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~ 457 (783)
+-+...|...+..+...|+.++|. +++++.... .+.+...|...+...-+.|+++.|.++|+.+.... -
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 346677877787788888888886 888888875 44466677788888888888888988888877531 0
Q ss_pred CC------------CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 039931 458 FP------------DAVAFSAYINGLSKAGLVDEAYGVFLEMSRI-GFVPNNFAYNSLIAGFCNR-GKLNEALKLEREMR 523 (783)
Q Consensus 458 ~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~ 523 (783)
.| ....|...+....+.|..+.|..+|....+. + .+....|...+..-.+. ++.+.|.++|+...
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 13 2346888888888889999999999999875 2 12233443333333344 45899999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 524 QKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP--DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI 601 (783)
Q Consensus 524 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 601 (783)
+. .+-+...|...++.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+. .|+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 87 33367777888888888999999999999998763211 3467888888888899999999999999984 4654
Q ss_pred HHHHHHHHHH
Q 039931 602 TTYNIRMHGY 611 (783)
Q Consensus 602 ~~~~~li~~~ 611 (783)
.....+++-|
T Consensus 575 ~~~~~f~~ry 584 (679)
T 4e6h_A 575 NKLEEFTNKY 584 (679)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHHh
Confidence 4444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-12 Score=129.97 Aligned_cols=228 Identities=8% Similarity=-0.140 Sum_probs=165.9
Q ss_pred HccCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFV---PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMK 548 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 548 (783)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...|+++.+..+. +..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3456778888888888775311 13556777788888888888888888888776443 6778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 549 PAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 549 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+|...|+++++.. +.+..++..+...|...|++++|.+.++++.+ +.|+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888888753 33577888888888888888888888888887 34655555555555677788999999988777
Q ss_pred HCCCCCCHHHHHHHHHHHh-hccHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 629 SAGIVPNTVTYNTLMNGVC-CDILDRAIIIAAKLLKMAFVPN-----VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 629 ~~g~~p~~~~~~~li~~~~-~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
... .++...+. +...+. .+..++|...++++... .|+ ..+|..+...|.+.|++++|+..++++++++|+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 532 23333343 222233 35667888888887653 232 467888888999999999999999999999875
Q ss_pred CCHHHH
Q 039931 703 FDETSY 708 (783)
Q Consensus 703 ~d~~~~ 708 (783)
+...+
T Consensus 248 -~~~~~ 252 (275)
T 1xnf_A 248 -NFVEH 252 (275)
T ss_dssp -TCHHH
T ss_pred -hHHHH
Confidence 44444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-12 Score=128.01 Aligned_cols=235 Identities=8% Similarity=-0.020 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNALIL 182 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 182 (783)
.++......+...|++++|+..|+++++.. +.+...+..+...+...|++++|+..|++++..+..+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778888888888888888888875 3455577888888888888888888888888743212 2334778888
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 262 (783)
.+...|++++|...|++..+.. +.+..++..+...|...|++++|+ ..+++..+.. +.+..+|..+...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~-------~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI-------QYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH-------HHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH-------HHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 8888888888888888887654 345567777777777777777774 4444444332 224556666662333
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC---hhHHHHHHHHHHhCC-CCCc------HHHHHHHHHHHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG---MEDGDRLLRDLSVSG-LLPN------CTLYDITVAGLC 332 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~ 332 (783)
..+++++|.+.|+++.+.... +...+..+...+...|+ .++|...++++.+.. ..|+ ..+|..+...|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 445777777777777765322 34555556666666565 666666666655431 0111 134444445555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 039931 333 WAGRLDEAMEFFEDMFEK 350 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~ 350 (783)
..|++++|...|++..+.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-12 Score=130.17 Aligned_cols=233 Identities=10% Similarity=0.030 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC-IRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
..+|+.+...+.+.|++++|+..|+++++..| .+..+|+.+..++...|+ +++|+..|+++++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45688888889999999999999999999876 678899999999999997 999999999999875 457889999999
Q ss_pred HHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 039931 218 AYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC 297 (783)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 297 (783)
++.+.|++++| ...+++..+.... +..+|..+...+.+.|++++|+..|+++++..+. +...|+.+..++.
T Consensus 175 ~~~~~g~~~eA-------l~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 175 LVEWLRDPSQE-------LEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHTCCTTH-------HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHccCHHHH-------HHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 99999999998 4566766665433 7889999999999999999999999999987554 6778888888888
Q ss_pred c-cCChhHH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 298 K-YGGMEDG-----DRLLRDLSVSGLLPNCTLYDITVAGLCWAG--RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 298 ~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
. .|..++| .+.+++.+..... +...|+.+...+...| ++++|.+.+.++ +.. ..+...+..+...|.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence 8 5555777 3667776665432 4556666666666666 467777777766 332 22556667777777665
Q ss_pred C---------CHHHHHHHHHHH-HhC
Q 039931 370 G---------LEENAFEAYKIM-HQF 385 (783)
Q Consensus 370 g---------~~~~A~~~~~~m-~~~ 385 (783)
| ..++|+++|+++ .+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccchHHHHHHHHHHHHHHHHHh
Confidence 3 246777777776 443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-10 Score=124.77 Aligned_cols=457 Identities=9% Similarity=-0.032 Sum_probs=298.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---cchHhh
Q 039931 154 DYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQ---TSYALG 230 (783)
Q Consensus 154 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 230 (783)
...+.+..|++.+..+| .|..+|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|+ .+.+
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v-- 122 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI-- 122 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH--
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH--
Confidence 34566777788888877 79999999999999999999999999999876 36677888888888888887 7766
Q ss_pred hccchHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCC-HhHHHHHHHHHHc
Q 039931 231 KCGAGRMIFDMIQEEG-LSPNVVVYNALLNGYVKARDI--------DQANMLYEEMRS-RDI-APD-AVTFNIIVSGHCK 298 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~~ 298 (783)
+.+|++..... ..|++..|...+....+.++. +...++|+..+. .|. .|+ ...|...+.....
T Consensus 123 -----~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 123 -----EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp -----HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 78999887754 147899999998877766654 334578887665 366 554 4567777765432
Q ss_pred ---------cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 299 ---------YGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 299 ---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
.++++.+..+|+.++......-..+|......--..+. ..+.+++.+. .
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~ 255 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------S 255 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------H
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------h
Confidence 33466788888888753222222233222111000000 0122222111 1
Q ss_pred CCHHHHHHHHHHHHh--CCC----C-----------C--C------HHHHHHHHHHHHhcC-------ChhHHHHHHHHH
Q 039931 370 GLEENAFEAYKIMHQ--FGL----T-----------P--S------SCTCSSLLVGLCKKG-------RLPEAWDLLCKM 417 (783)
Q Consensus 370 g~~~~A~~~~~~m~~--~~~----~-----------p--~------~~~~~~li~~~~~~g-------~~~~a~~~~~~~ 417 (783)
.+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++.
T Consensus 256 ~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a 335 (679)
T 4e6h_A 256 AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Confidence 233344444444321 011 0 1 0 123444443322222 123456678888
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-----
Q 039931 418 IEKGFPINKVAFTVLLDGYFRIGDLIGAQ-SLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG----- 491 (783)
Q Consensus 418 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 491 (783)
+.. ++.+...|...+..+...|+.++|. ++|++..... +.+...|-.++...-+.|++++|.++|+.+.+..
T Consensus 336 L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 336 AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 776 4447888888888888899998996 9999988743 3366777888888888999999999999887631
Q ss_pred ----CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHH
Q 039931 492 ----FVPN------------NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQG-RMKPAIDAF 554 (783)
Q Consensus 492 ----~~p~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~ 554 (783)
..|+ ..+|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+.+ +.+.|..+|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0132 23567777777788889999999999887611112334433333333444 589999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039931 555 MDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP--DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632 (783)
Q Consensus 555 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 632 (783)
+..++. ++-+...|...++.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-- 570 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-- 570 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 988876 34456677788888888899999999999988743212 3467888888888889999999999999863
Q ss_pred CCCHHHHHHHHHHH
Q 039931 633 VPNTVTYNTLMNGV 646 (783)
Q Consensus 633 ~p~~~~~~~li~~~ 646 (783)
.|+......+++-|
T Consensus 571 ~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 571 FPEVNKLEEFTNKY 584 (679)
T ss_dssp STTCCHHHHHHHHT
T ss_pred CCCCcHHHHHHHHh
Confidence 34443444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=131.88 Aligned_cols=222 Identities=12% Similarity=-0.027 Sum_probs=135.1
Q ss_pred hcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhh
Q 039931 116 RVEMSAEVMEILYRMREVGIM---PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRI 192 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g~~---~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 192 (783)
..|++++|+..|+++++.... .+..++..+...+...|++++|...|+++++..| .+..++..++..+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346678888888888776321 2345677777788888888888888888877755 467777778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 039931 193 GESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANM 272 (783)
Q Consensus 193 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 272 (783)
|...++++.+.. +.+..++..+...|.+.|++++| ...++++.+. .|+.......+..+...|++++|..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A-------~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLA-------QDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHH-------HHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 888888777653 34566677777777777777776 3455555443 2333334444444455677777777
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 273 LYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLP---NCTLYDITVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 273 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
.+++..... +++...+. ++..+...++.++|.+.++.+....... +...+..+...|.+.|++++|...|++..+
T Consensus 166 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776665542 22333332 4445555555566666666554432110 123444445555555555555555555554
Q ss_pred C
Q 039931 350 K 350 (783)
Q Consensus 350 ~ 350 (783)
.
T Consensus 244 ~ 244 (275)
T 1xnf_A 244 N 244 (275)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-12 Score=125.81 Aligned_cols=230 Identities=12% Similarity=-0.005 Sum_probs=113.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS--SCTCSSLLVGLCK 403 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~ 403 (783)
.....+...|++++|...|++..+..+. +...+..+...|...|++++|++.+++..+.+..|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444555666666666666666654332 344566666666666666666666666665321111 1225555556666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
.|++++|+..+++..+.... +..++..+...|...|++++|...|++..+..+. +...+..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666554322 4455555555555566666665555555544222 344444444222223355555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHHHHH
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGK---LNEALKLEREMRQKG-LLPD------NFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
|+++.+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+ ...|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555432 2223444444444444444 444444444443321 0111 12344444444444555555554
Q ss_pred HHHHHH
Q 039931 554 FMDMYR 559 (783)
Q Consensus 554 ~~~m~~ 559 (783)
|+++++
T Consensus 244 ~~~al~ 249 (272)
T 3u4t_A 244 WKNILA 249 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-12 Score=123.05 Aligned_cols=165 Identities=14% Similarity=0.003 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLP-DNFTFNIIING 540 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~ 540 (783)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.+..| +...+..+...
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 333444444444444444444444443321 1233344444444444444444444444444311112 23344444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQA 620 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 620 (783)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHH
Confidence 445555555555555444431 1234444455555555555555555555544421 22334444445555555555555
Q ss_pred HHHHHHHHH
Q 039931 621 AMMLDELVS 629 (783)
Q Consensus 621 ~~~~~~m~~ 629 (783)
.+.++++.+
T Consensus 229 ~~~~~~~~~ 237 (252)
T 2ho1_A 229 ASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-11 Score=119.25 Aligned_cols=219 Identities=12% Similarity=-0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNELNRRKIFPDAVAFSAYI 468 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 468 (783)
++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444444421 23334444444444 444444444444444432 344444444
Q ss_pred HHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 469 NGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN----RGKLNEALKLEREMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 469 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 540 (783)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 555555555555554432 44445555555555 555555555555555543 34444455555
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 541 FCK----QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYC 612 (783)
Q Consensus 541 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 612 (783)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 555 556666666666555532 34455555555555 566666666666665532 2445555555565
Q ss_pred h----cCCHHHHHHHHHHHHH
Q 039931 613 N----IRKMNQAAMMLDELVS 629 (783)
Q Consensus 613 ~----~g~~~~A~~~~~~m~~ 629 (783)
+ .+++++|.+.|++..+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHH
Confidence 5 5666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-11 Score=120.30 Aligned_cols=224 Identities=9% Similarity=-0.098 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLR----VGDYGSVWKLFRDMIHLGPRPSNYTF 177 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 177 (783)
.++.++..+...|.+.|++++|...|++..+. .+..++..+...+.. .|++++|+..|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45667777888888888888888888888773 345677777777877 888888888888887764 56677
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 178 NALILGFCR----NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCI----RGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 178 ~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
..+...+.. .+++++|+..|++..+.+ +..++..+...|.. .+++++| ...+++..+.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A-------~~~~~~a~~~~--- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKA-------VEYFTKACDLN--- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH-------HHHHHHHHHTT---
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHH-------HHHHHHHHhcC---
Confidence 777777777 778888887777777653 55666666666666 6666666 34555554443
Q ss_pred ChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCcH
Q 039931 250 NVVVYNALLNGYVK----ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK----YGGMEDGDRLLRDLSVSGLLPNC 321 (783)
Q Consensus 250 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 321 (783)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|.+.+++..+.+. .
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~ 218 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---G 218 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---H
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---H
Confidence 44555566666665 666666666666665542 33444444444444 4555555555555444321 3
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 039931 322 TLYDITVAGLCW----AGRLDEAMEFFEDMFEK 350 (783)
Q Consensus 322 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 350 (783)
..+..+...|.. .+++++|.+.|++..+.
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 333334444444 44444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-11 Score=122.04 Aligned_cols=200 Identities=15% Similarity=-0.018 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039931 391 SCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYING 470 (783)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 470 (783)
...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 34455566666666666666666666665532 24556666666666666666666666666554332 45566666666
Q ss_pred HHccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 039931 471 LSKAGLVDEAYGVFLEMSRIGFVP-NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP 549 (783)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 549 (783)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522223 3445555666666666666666666666654322 45566666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 550 AIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 550 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665532 23455566666666666666666666666665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-11 Score=118.64 Aligned_cols=200 Identities=14% Similarity=-0.021 Sum_probs=104.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039931 426 KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG 505 (783)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 505 (783)
...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 334444455555555555555555554443221 34445555555555555555555555554432 2244455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 506 FCNR-GKLNEALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 506 ~~~~-g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555521122 23445555555566666666666666555532 223455555555666666666
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 584 RADELVNKMYAGGLD-PDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 584 ~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+|.+.++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666655522 1 2444455555555566666666666655543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=118.74 Aligned_cols=198 Identities=13% Similarity=-0.083 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 394 CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 394 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.... +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 33444444444444444444444444321 13344444444444555555555555444443221 34445555555555
Q ss_pred c-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 039931 474 A-GLVDEAYGVFLEMSRIGFVPN-NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAI 551 (783)
Q Consensus 474 ~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 551 (783)
. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.... +...+..+...+.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHH
Confidence 5 555555555555554211222 344555555555666666666666655554322 4555566666666666666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 552 DAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 552 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
..++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666665542113445555555555666666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-12 Score=123.07 Aligned_cols=198 Identities=14% Similarity=0.023 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 039931 357 FAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGY 436 (783)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (783)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 334444444555555555555555554432 12344444444445555555555555555444422 1344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039931 437 FRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEAL 516 (783)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 516 (783)
...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 4445555555544444443221 33444444444444444444444444444321 223334444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 517 KLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 517 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
..++++.+.... +..++..+...|...|++++|...++++.+
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444444433211 334444444444444444444444444444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-12 Score=123.11 Aligned_cols=197 Identities=13% Similarity=0.053 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 428 AFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFC 507 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 507 (783)
.+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 3444444444444444444444444443222 34444444444555555555555555544432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADE 587 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 587 (783)
..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555544322 44455555555555555555555555555432 2244555555555555566666665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 588 LVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 588 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.++++.+.. +.+..++..+..+|...|++++|...++++++
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 555555421 22345555555666666666666666665554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=138.28 Aligned_cols=207 Identities=13% Similarity=0.017 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE----SAITILFKSLLRVGDYGSVWKLFRDMIHLG-----PRPSNY 175 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 175 (783)
..+..+...+...|++++|+..|+++++.+ +.+. ..+..+...+...|++++|...|+++++.. ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 456677889999999999999999999875 2333 478889999999999999999999987641 123456
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHhcCC-----------------cchHhhhcc
Q 039931 176 TFNALILGFCRNGCIRIGESLLHVMHKYM-----CVADFFAYNILINAYCIRGQ-----------------TSYALGKCG 233 (783)
Q Consensus 176 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 233 (783)
++..+...+...|++++|...+++..+.. .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78899999999999999999999877541 12235578889999999999 777766555
Q ss_pred chHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHccCChhHHHHH
Q 039931 234 AGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA-PD----AVTFNIIVSGHCKYGGMEDGDRL 308 (783)
Q Consensus 234 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~A~~~ 308 (783)
++.++...... ......++..+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|.+.
T Consensus 208 ~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 208 ENLKLMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 55555444321 0112357778888888999999999988887653110 01 12455555566666666666666
Q ss_pred HHHHHh
Q 039931 309 LRDLSV 314 (783)
Q Consensus 309 ~~~~~~ 314 (783)
+++...
T Consensus 286 ~~~al~ 291 (411)
T 4a1s_A 286 YKRTLA 291 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-12 Score=134.53 Aligned_cols=171 Identities=16% Similarity=0.078 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------------------hhH
Q 039931 210 FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD--------------------IDQ 269 (783)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------------~~~ 269 (783)
.++..+...|...|++++|+..++++..+....... .....++..+...|...|+ +++
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 344555555555566655554444444443332110 0113467777788888888 788
Q ss_pred HHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C----cHHHHHHHHHHHHhcCCHHH
Q 039931 270 ANMLYEEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-P----NCTLYDITVAGLCWAGRLDE 339 (783)
Q Consensus 270 A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~ 339 (783)
|.+.+++..+. +..| ...++..+...+...|++++|.+.+++..+.... + ...++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88777766442 1111 1234555555666666666666666555432100 0 11244444555555555555
Q ss_pred HHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 340 AMEFFEDMFEKGIS-PS----IFAFNSIIAAYSRAGLEENAFEAYKIM 382 (783)
Q Consensus 340 A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (783)
|...+++..+.... ++ ..++..+...|...|++++|...+++.
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 55555554432000 00 233444444444555555555444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-12 Score=134.50 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=209.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-C
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS----ESAITILFKSLLRVGDYGSVWKLFRDMIHL----GPR-P 172 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~~-~ 172 (783)
.....+..+...+...|++++|...|+++++.+ +.+ ..++..+...+...|++++|...|++++.. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445678888999999999999999999999875 233 357888999999999999999999988654 111 2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHhcCC--------------------cch
Q 039931 173 SNYTFNALILGFCRNGCIRIGESLLHVMHKYMC-VAD----FFAYNILINAYCIRGQ--------------------TSY 227 (783)
Q Consensus 173 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~ 227 (783)
...++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245788899999999999999999998875310 012 4578889999999999 788
Q ss_pred HhhhccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC
Q 039931 228 ALGKCGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQANMLYEEMRSRDI-APD----AVTFNIIVSGHCKYGG 301 (783)
Q Consensus 228 A~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~ 301 (783)
|+..++.+..++... +..| ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 166 A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 876665555554443 1111 245788889999999999999999999875311 112 2368888889999999
Q ss_pred hhHHHHHHHHHHhCCC----CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC
Q 039931 302 MEDGDRLLRDLSVSGL----LP-NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGIS-PS----IFAFNSIIAAYSRAGL 371 (783)
Q Consensus 302 ~~~A~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~ 371 (783)
+++|...+++...... .+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999998875321 11 1557788889999999999999999988763111 11 4566777777788888
Q ss_pred HHHHHHHHHHHHh
Q 039931 372 EENAFEAYKIMHQ 384 (783)
Q Consensus 372 ~~~A~~~~~~m~~ 384 (783)
+++|.+.+++..+
T Consensus 323 ~~~A~~~~~~al~ 335 (406)
T 3sf4_A 323 HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-12 Score=129.77 Aligned_cols=241 Identities=10% Similarity=0.010 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS----ESAITILFKSLLRVGDYGSVWKLFRDMIHL----G-PRPSNY 175 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 175 (783)
..+......+...|++++|...|+++++.+ +.+ ...+..+...+...|++++|.+.|++++.. + ......
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 356667788999999999999999999875 233 367888999999999999999999987654 1 112355
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHhcCC--------------------cchHhh
Q 039931 176 TFNALILGFCRNGCIRIGESLLHVMHKYMC-VAD----FFAYNILINAYCIRGQ--------------------TSYALG 230 (783)
Q Consensus 176 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 230 (783)
++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999998765311 112 3478888899999999 677765
Q ss_pred hccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHccCChhHH
Q 039931 231 KCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA-PD----AVTFNIIVSGHCKYGGMEDG 305 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~A 305 (783)
.++++..+...... ......++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|
T Consensus 165 ~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 165 LYEENLSLVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55544444443311 0112346777888888889999999888887653100 01 12455555555566666666
Q ss_pred HHHHHHHHhCCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 306 DRLLRDLSVSGLL-----PNCTLYDITVAGLCWAGRLDEAMEFFEDMF 348 (783)
Q Consensus 306 ~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (783)
...+++....... ....++..+...+...|++++|...+++..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6655554432100 002233344444444444444444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=131.38 Aligned_cols=206 Identities=11% Similarity=0.032 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCCHHh
Q 039931 141 AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN----YTFNALILGFCRNGCIRIGESLLHVMHKY----M-CVADFFA 211 (783)
Q Consensus 141 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~ 211 (783)
.+..+...+...|++++|+..|+++++.++. +. ..+..+...+...|++++|...+++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455677889999999999999999998653 33 47889999999999999999999988653 1 1234568
Q ss_pred HHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----------------hhHHHHHH
Q 039931 212 YNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD-----------------IDQANMLY 274 (783)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 274 (783)
+..+...|...|++++|+..++++.++...... ......++..+...|...|+ +++|++.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 889999999999999998777776666655421 11234578888899999999 88888888
Q ss_pred HHHHhC----CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C----cHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 275 EEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-P----NCTLYDITVAGLCWAGRLDEAMEFF 344 (783)
Q Consensus 275 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~ 344 (783)
++..+. +..| ...++..+...+...|++++|.+.+++..+.... . ....+..+...|...|++++|...|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 1111 1234555555666666666666666655432110 0 0113444444555555555555555
Q ss_pred HHHHH
Q 039931 345 EDMFE 349 (783)
Q Consensus 345 ~~m~~ 349 (783)
++...
T Consensus 287 ~~al~ 291 (411)
T 4a1s_A 287 KRTLA 291 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.7e-12 Score=128.71 Aligned_cols=283 Identities=17% Similarity=0.058 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCCHHh
Q 039931 140 SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS---NYTFNALILGFCRNGCIRIGESLLHVMHKY----MC-VADFFA 211 (783)
Q Consensus 140 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~ 211 (783)
..+......+...|++++|+..|+++++..+... ...+..+...+...|++++|...+++..+. +. +....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4455667788999999999999999999865322 367889999999999999999999987643 11 123567
Q ss_pred HHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------------------hhHHH
Q 039931 212 YNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD--------------------IDQAN 271 (783)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------------~~~A~ 271 (783)
+..+...|...|++++|+..++++.++...... ......++..+...|...|+ +++|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 888999999999999998766655555443211 00114478888889999999 88888
Q ss_pred HHHHHHHhC----CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 272 MLYEEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFED 346 (783)
Q Consensus 272 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (783)
+.+++..+. +..| ...++..+...+...|++++|.+.+++..+....
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------- 215 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---------------------------- 215 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----------------------------
Confidence 887776432 1001 1223444444555555555555555544322000
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 039931 347 MFEKGI-SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT-PS----SCTCSSLLVGLCKKGRLPEAWDLLCKMIEK 420 (783)
Q Consensus 347 m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 420 (783)
.+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 216 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 216 ---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 000 001224455555555555555555555554332100 01 334555556666666666666666655443
Q ss_pred CC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 421 GF-----PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 421 ~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
.. .....++..+...|.+.|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 111335666677777777777777777776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-10 Score=113.40 Aligned_cols=182 Identities=8% Similarity=-0.032 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHH
Q 039931 443 IGAQSLWNELNRR-KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN-NF-AYNSLIAGFCNRGKLNEALKLE 519 (783)
Q Consensus 443 ~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~l~ 519 (783)
++|..+|++..+. .+. +...|..++..+.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555556555552 221 4445555666666666666666666666553 232 22 5555666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C
Q 039931 520 REMRQKGLLPDNFTFNIIINGFC-KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG-L 597 (783)
Q Consensus 520 ~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 597 (783)
++..+.... +...|...+.... ..|++++|..+|++.++.. +-+...|..++..+.+.|++++|..+|++.++.. +
T Consensus 158 ~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 666654322 3333333322211 2567777777777766541 2245666666777777777777777777777642 3
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 598 DP--DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 598 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 345666667777777777777777777665
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-10 Score=108.22 Aligned_cols=164 Identities=13% Similarity=0.035 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 427 VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGF 506 (783)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 506 (783)
.+|..+...|.+.|++++|++.|++..+..+. +..++..+...|.+.|++++|...+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 33444444444444444444444444433222 33344444444444444444444444443321 12223333333334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRAD 586 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 586 (783)
...++++.|...+.+.....+. +...+..+...|.+.|++++|++.|++.++.. +.+..+|..+...|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 4444444444444444333221 33334444444444444444444444444321 112333444444444444444444
Q ss_pred HHHHHHHH
Q 039931 587 ELVNKMYA 594 (783)
Q Consensus 587 ~~~~~m~~ 594 (783)
+.|++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-10 Score=113.00 Aligned_cols=216 Identities=14% Similarity=-0.014 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 039931 121 AEVMEILYRMREVGIMPSESAITILFKSLLR-------VGDY-------GSVWKLFRDMIH-LGPRPSNYTFNALILGFC 185 (783)
Q Consensus 121 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 185 (783)
++|..+|+++++.. +.+...|..++..+.. .|++ ++|..+|++.++ ..| .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 56667777766654 4566667666666543 3554 666666666666 333 44556666666666
Q ss_pred hcCChhhHHHHHHHHHhCCCCCC-HH-hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH-
Q 039931 186 RNGCIRIGESLLHVMHKYMCVAD-FF-AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV- 262 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~- 262 (783)
+.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++| +.+|++..+... ++...|...+....
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A-------~~~~~~a~~~~p-~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG-------RMIFKKAREDAR-TRHHVYVTAALMEYY 180 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHTSTT-CCTHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHH-------HHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 666666666666666653 232 22 455555555555555555 344554444321 12333332222211
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCC-CCC--cHHHHHHHHHHHHhcCCHHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSG-LLP--NCTLYDITVAGLCWAGRLDE 339 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~ 339 (783)
..|++++|..+|++..+.... +...|..++..+.+.|+.++|..+|++..... +.| ....|..++..+.+.|+.++
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 135555555555555443211 33444444444444444444444444444431 122 23344444444444444444
Q ss_pred HHHHHHHHHH
Q 039931 340 AMEFFEDMFE 349 (783)
Q Consensus 340 A~~~~~~m~~ 349 (783)
|..+++++.+
T Consensus 260 a~~~~~~a~~ 269 (308)
T 2ond_A 260 ILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=107.39 Aligned_cols=168 Identities=10% Similarity=-0.005 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
.++.+|..|..+|.+.|++++|+..|++.++.+ +.+..++..+...+.+.|++++|+..+.......+ .+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 356788888999999999999999999988876 56778888888888899999999999888888765 5667777788
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHH
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGY 261 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 261 (783)
..+...++++.|...+.+..+.. +.+..++..+...|.+.|++++|+ +.|++..+..+ .+..+|..+...|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~-------~~~~~~l~~~p-~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAI-------EAYEKTISIKP-GFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHH-------HHHHHHHHhcc-hhhhHHHHHHHHH
Confidence 88888888888888888887654 456677788888888888888874 45555555432 2567788888888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 039931 262 VKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 262 ~~~g~~~~A~~~~~~m~~~ 280 (783)
.+.|++++|++.|++.++.
T Consensus 152 ~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHhC
Confidence 8888888888888887765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-12 Score=128.71 Aligned_cols=185 Identities=16% Similarity=0.097 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREV-------GIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 174 (783)
.+..++..+...|...|++++|...|+++.+. ..+....++..+...+...|++++|...|++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Confidence 34567888888888888888888888887763 222334456666666777777777777776665431
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHH
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVY 254 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~ 254 (783)
+.......+....++..+...|...|++++|+..++++.++..............++
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 000000001122334444444444455544443333333344333221111245678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSR------DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
..+...+...|++++|++.|+++.+. +-.| ...++..+...+...|++++|.+.++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998764 1122 234577777888888888888888888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.3e-12 Score=127.83 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREV------G-IMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLG---- 169 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g-~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~---- 169 (783)
+....++..+...|...|++++|...++++++. + .+....++..+...+...|++++|...|+++++..
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 344578999999999999999999999998764 1 12234456667777777777777777777765531
Q ss_pred --C-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC
Q 039931 170 --P-RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 170 --~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
. .....++..+...+...|++++|...++++. .++.......
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~~~~~~~~ 190 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-----------------------------------EIYQTKLGPD 190 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHHHHTSCTT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------HHHHHHhCCC
Confidence 1 1122234444444444555555544444433 3332221111
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 247 LSPNVVVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 247 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
......++..+...|.+.|++++|.+.|+++.+
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111345788899999999999999999999886
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-10 Score=121.86 Aligned_cols=230 Identities=10% Similarity=-0.013 Sum_probs=142.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEK----GFPI-NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI-FP-----DAVAFS 465 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~ 465 (783)
....+...|++++|...+++..+. +-++ ...++..+...|...|+++.|...+++..+... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556677777777777776653 1111 234566677777777777777777766554210 01 134566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGF-VPN----NFAYNSLIAGFCNRGKLNEALKLEREMRQ-----KGLLPDNFTFN 535 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~ 535 (783)
.+...|...|++++|.+.|++..+..- .++ ..++..+...|...|++++|.+.+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 677777777888888777777654210 011 23566777777788888888888777765 22122356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC---CC-ChhHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 039931 536 IIINGFCKQGRMKPAIDAFMDMYRTGL---VP-DIVTYNTLIGGYCKALD---IVRADELVNKMYAGGLDPD-ITTYNIR 607 (783)
Q Consensus 536 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 607 (783)
.+...|.+.|++++|...+++..+... .| ....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 777778888888888888777664210 11 12234556666777777 66666666554 22333 3456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~ 629 (783)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888777764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-10 Score=123.60 Aligned_cols=210 Identities=10% Similarity=-0.058 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRM-KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVN 590 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 590 (783)
++++...+++...... .+...+..+...+...|++ ++|.+.|++.++.. +.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666555432 3667777777777788888 88888888877652 2246778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh-h--------ccH
Q 039931 591 KMYAGGLDPDITTYNIRMHGYCNI---------RKMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVC-C--------DIL 651 (783)
Q Consensus 591 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~-~--------~~~ 651 (783)
+..+ +.|+...+..+...|... |++++|+..+++.++. .|+ ...|..+...+. . +++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8876 457777777778888887 8888888888887763 344 344555554443 2 678
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHH
Q 039931 652 DRAIIIAAKLLKMAFVP----NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQE 727 (783)
Q Consensus 652 ~~A~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~ 727 (783)
++|+..++++++. .| +...|..+...|...|++++|++.++++.+++|+ +..++..++.++.. .++.+.+.+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~-lg~~~eAi~ 313 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEF-LSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999998883 46 5678889999999999999999999999999987 78889898888765 344555554
Q ss_pred HHhc
Q 039931 728 TSEK 731 (783)
Q Consensus 728 ~~~~ 731 (783)
...+
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 4444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-10 Score=120.49 Aligned_cols=300 Identities=11% Similarity=-0.015 Sum_probs=136.1
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HhHHHHHHHHH--HccCChhHHH-----------HHHHHHHhCCCCCcH--
Q 039931 261 YVKARDIDQANMLYEEMRSR--DIAPD--AVTFNIIVSGH--CKYGGMEDGD-----------RLLRDLSVSGLLPNC-- 321 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~~-- 321 (783)
+.+.+++++|..+++++.+. .+..| ...|-.++..- ...++++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998664 23223 33334443321 1122223333 444443321100000
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----
Q 039931 322 --TLYDITVAGLCWAGRLDEAMEFFEDMFEK----GISP-SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT-P---- 389 (783)
Q Consensus 322 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p---- 389 (783)
..+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|+..+++..+.-.. +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 00111233444556666666666555442 0011 1234555555555555555555555554432000 0
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 039931 390 -SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFP-DAVAFSAY 467 (783)
Q Consensus 390 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 467 (783)
...++..+...|...|++++|...+++..+... +.+..+ ...++..+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE-------------------------------AEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-------------------------------HcCChHHHHHHHHHH
Confidence 112344444444445555555544444433200 000000 11244445
Q ss_pred HHHHHccCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRI----GF-VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK----GLLPDNFTFNIII 538 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~li 538 (783)
...|...|++++|.+.+++..+. +. +....++..+...+.+.|++++|...+++..+. +-......+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554431 11 222344555555555555555555555554432 1111122234455
Q ss_pred HHHHhcCC---hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 539 NGFCKQGR---MKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 539 ~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
..+...|+ +++|+.++++. +..| ....+..+...|...|++++|.+.+++..+
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555665 55555555544 2222 233455566666666666666666666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=126.74 Aligned_cols=192 Identities=13% Similarity=-0.031 Sum_probs=100.8
Q ss_pred CHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDL-IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
+...+..+...+...|++ ++|++.|++..+..+. +...|..+...|.+.|++++|.+.|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 444455555555555555 5555555555443322 3445555555555555555555555555543 24444555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCC--
Q 039931 504 AGFCNR---------GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ--------GRMKPAIDAFMDMYRTGLVP-- 564 (783)
Q Consensus 504 ~~~~~~---------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p-- 564 (783)
..+... |++++|...+++..+..+. +...|..+...|... |++++|+..|++.++. .|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCc
Confidence 555555 5555555555555554322 445555555555555 5566666666655553 23
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 565 --DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMML 624 (783)
Q Consensus 565 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 624 (783)
+...|..+...|...|++++|.+.|++..+. .| +...+..+..++...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555556666666666666666655552 23 3344555555555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-09 Score=112.10 Aligned_cols=231 Identities=11% Similarity=0.018 Sum_probs=117.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHhHHHHHHHHH
Q 039931 150 LRVGDYGSVWKLFRDMIHLGPRPSNY----TFNALILGFCRNGCIRIGESLLHVMHKYMC-VAD----FFAYNILINAYC 220 (783)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~ 220 (783)
...|++++|...+++.+...+..+.. +++.+...+...|++++|...+++..+... ..+ ..++..+...+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34444444444444444433222211 334444445555555555555555433110 011 123455566666
Q ss_pred hcCCcchHhhhccchHHHHHHHHHCCCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHhHHHHHH
Q 039931 221 IRGQTSYALGKCGAGRMIFDMIQEEGLS--P-NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA--P--DAVTFNIIV 293 (783)
Q Consensus 221 ~~g~~~~A~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 293 (783)
..|++++|+..++++..+... .+.. | ...++..+...+...|++++|...+++....... + ...++..+.
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINE---QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH---TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHH---hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 777777775544444433332 2221 2 2346677888899999999999999998764221 1 123455566
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCc--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 039931 294 SGHCKYGGMEDGDRLLRDLSVSGLLPN--CTLYD----ITVAGLCWAGRLDEAMEFFEDMFEKGISPS---IFAFNSIIA 364 (783)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~ 364 (783)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......++ ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 666677777777777766654311111 11111 122234566666666666665554322111 123344455
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 039931 365 AYSRAGLEENAFEAYKIMH 383 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~ 383 (783)
.+...|++++|...++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-09 Score=111.60 Aligned_cols=276 Identities=10% Similarity=-0.002 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSES----AITILFKSLLRVGDYGSVWKLFRDMIHLGPR-PS----NYT 176 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 176 (783)
+...+...+...|++++|...+++.+......+.. +++.+...+...|++++|...+++.....+. .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44555667778999999999999988865333332 4667778888999999999999998764221 12 234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC----CCC--C-CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKY----MCV--A-DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
++.+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...++++..+. ...|...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~ 172 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL---SSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTSCGGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hccCcHH
Confidence 677888899999999999999987653 211 2 24567778888999999999954433332221 1222211
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-hHHH-----HHHHHHHccCChhHHHHHHHHHHhCCCCC---c
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA-VTFN-----IIVSGHCKYGGMEDGDRLLRDLSVSGLLP---N 320 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~ 320 (783)
...++..+...+...|++++|...+++.......++. ..+. ..+..+...|+.++|...++........+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2457888889999999999999999998754212111 1222 23344778999999999999987654322 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 321 CTLYDITVAGLCWAGRLDEAMEFFEDMFEK----GISPSI-FAFNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234667788899999999999999987653 211122 2556667777788888888887777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-09 Score=102.05 Aligned_cols=206 Identities=10% Similarity=-0.057 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLI 573 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li 573 (783)
|+..+......+...|++++|...|++..+....++...+..+...+...|++++|+..|++.++. .| +...|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 455666666667777777777777777766554346666666777777777777777777777764 34 455677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H-HHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDP-DI-------TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN--T-VTYNTL 642 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~~~~~l 642 (783)
..|...|++++|++.+++..+. .| +. ..|..+...+...|++++|++.|++.++ +.|+ . ..|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 7777777777777777777762 34 33 3467777788888888888888888776 3565 3 233333
Q ss_pred HHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 643 MNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 643 i~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
...+ ...+...++++...+ ..+...|.... ....|.+++|+.+++++.++.|+ +..+...+..+
T Consensus 160 ~~~~----~~~~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLF----YNNGADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHH----HHHHHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 3222 233444455555532 22334444443 34567789999999999999987 77777666655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-09 Score=112.93 Aligned_cols=312 Identities=11% Similarity=0.013 Sum_probs=138.5
Q ss_pred CCChHHHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCC--CCHhHHHHHHHH--HHccCChhHHH---------HHHH
Q 039931 248 SPNVVVYNALLNGY--VKARDIDQANMLYEEMRSR--DIA--PDAVTFNIIVSG--HCKYGGMEDGD---------RLLR 310 (783)
Q Consensus 248 ~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~--~~~~g~~~~A~---------~~~~ 310 (783)
.|+..+-+.|-..| .+.+++++|.++++++.+. .+. ++...|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555666666676 7899999999999987653 222 223334444432 11112222222 4444
Q ss_pred HHHhCCCCCcH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 311 DLSVSGLLPNC--T--LYDITVAGLCWAGRLDEAMEFFEDMFEKGI-SP----SIFAFNSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 311 ~~~~~~~~~~~--~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (783)
.+.......+. . .+......+...|++++|...|++..+... .+ ...++..+...|...|++++|+..+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 43221111010 0 111222334455666666666666554210 01 133455555555566666666555555
Q ss_pred HHhCC--C---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 382 MHQFG--L---TP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 382 m~~~~--~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
..+.. . .+ ...+++.+...|...|++++|.+.+++..+... +.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-------------------------------~~ 215 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM-------------------------------DI 215 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HT
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------Hc
Confidence 44310 0 00 122344445555555555555555554443200 00
Q ss_pred CCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 039931 456 KIF-PDAVAFSAYINGLSKAGLVDEAYGVFLEMSR-----IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKG--- 526 (783)
Q Consensus 456 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--- 526 (783)
+.. ....++..+...|...|++++|.+.|++..+ .. +....++..+...+.+.|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 000 0122344444444445555555544444433 21 1123344455555555555555555555544321
Q ss_pred -CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 527 -LLPDNFTFNIIINGFCKQGR---MKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 527 -~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.......+..+...+...|+ +.+|+..+++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112233333344444444 44444444431 11221 23444555555666666666666555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=114.87 Aligned_cols=228 Identities=9% Similarity=-0.047 Sum_probs=138.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--C---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHHHHHH
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGF--P---INKVAFTVLLDGYFRIGDLIGAQSLWNELNRR----KI-FP-DAVAFSA 466 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p-~~~~~~~ 466 (783)
...+...|++++|+..+++..+... . ....++..+...|...|+++.|...+++..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445567777777777777665311 1 12345666777777777777777777665542 10 11 1345666
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 039931 467 YINGLSKAGLVDEAYGVFLEMSRI----GFVP-NNFAYNSLIAGFCNRGKLNEALKLEREMRQ-----KGLLPDNFTFNI 536 (783)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~~ 536 (783)
+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 777777777777777777776542 1111 123566677777777888888877777765 3322 3566677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC---CCC-hhHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRTGL---VPD-IVTYNTLIGGYCKALD---IVRADELVNKMYAGGLDPD-ITTYNIRM 608 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li 608 (783)
+...+.+.|++++|...+++..+..- .|. ...+..+...|...++ +.+|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 77777777888888877777765311 111 2334455555556666 56666665542 22332 24455667
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 039931 609 HGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=123.69 Aligned_cols=169 Identities=12% Similarity=-0.022 Sum_probs=142.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.++.+++.|...|.+.|++++|+..|+++++.. +.+..+++.|...|.+.|++++|++.|++.++..| .+..+|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 35567889999999999999999999999999886 56688899999999999999999999999999876 57888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLN 259 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 259 (783)
+..++...|++++|++.|++.++.. +.+..+|+.+...|.+.|++++|+ ..+++..+.... +..+|..+..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi-------~~~~~Al~l~P~-~~~a~~~L~~ 153 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAI-------ASYRTALKLKPD-FPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHhCCC-ChHHHhhhhh
Confidence 9999999999999999999998765 456788899999999999999884 455555554322 5778888999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 039931 260 GYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m~~ 279 (783)
.|...|++++|.+.+++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 99999999999888888765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-10 Score=113.65 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=120.3
Q ss_pred HhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhHHHHH
Q 039931 220 CIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR------DIAP-DAVTFNII 292 (783)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~l 292 (783)
...|++++|+..+++|.+++........+....++..+...|...|++++|+..|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3568888888888888888888775433345678999999999999999999999998764 1122 34567788
Q ss_pred HHHHHccCChhHHHHHHHHHHhC------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 039931 293 VSGHCKYGGMEDGDRLLRDLSVS------G-LLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEK------GISP-SIFA 358 (783)
Q Consensus 293 l~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~ 358 (783)
...+...|++++|.+.++++... . .......+..+...|...|++++|...|++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999998888887654 1 1223556777777788888888888888877664 1122 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
+..+...|...|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777777787777777777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-09 Score=99.41 Aligned_cols=165 Identities=12% Similarity=-0.019 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+..+ .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 467778888888888888888888887765 45677788888888888888888888888887754 5677788888888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
...|++++|...++++.+.. +.+...+..+...+...|++++| ...+++..+... .+..++..+...+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A-------~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEA-------IDSFKIALGLRP-NEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHH-------HHHHHHHHhcCc-cchHHHHHHHHHHHHc
Confidence 88888888888888877654 45566777777777777777777 345555544322 2556677777777777
Q ss_pred CChhHHHHHHHHHHhC
Q 039931 265 RDIDQANMLYEEMRSR 280 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~ 280 (783)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777776653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-09 Score=97.99 Aligned_cols=163 Identities=7% Similarity=-0.041 Sum_probs=95.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC 542 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 542 (783)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34444555555566666666665555432 23445555555666666666666666666555432 24555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 622 (783)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666542 2345566666666666666666666666666532 2345566666666666666666666
Q ss_pred HHHHHHH
Q 039931 623 MLDELVS 629 (783)
Q Consensus 623 ~~~~m~~ 629 (783)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6e-10 Score=111.96 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=116.3
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-CCCHHHHHHHHH
Q 039931 117 VEMSAEVMEILYRMRE-------VGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL------GP-RPSNYTFNALIL 182 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~ 182 (783)
.|++++|+..|++.++ .+.+....++..+...+...|++++|+..|+++++. +. +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4445555555544433 232334567788888888888888888888888764 11 233457888888
Q ss_pred HHHhcCChhhHHHHHHHHHhC------C-CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKY------M-CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYN 255 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~ 255 (783)
.+...|++++|...+++..+. . .+....++..+...|...|++++|+..++++.+++........+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 899999999999988887754 1 123456788888899999999999766666666555442221222456888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
.+...|.+.|++++|...|++..+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=98.64 Aligned_cols=199 Identities=13% Similarity=0.036 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIIN 539 (783)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 539 (783)
|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 455666666667777777777777777666542256666666777777777777777777777766433 5566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-Ch-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 039931 540 GFCKQGRMKPAIDAFMDMYRTGLVP-DI-------VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD---ITTYNIRM 608 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 608 (783)
.|...|++++|...+++.++. .| +. ..|..+...+...|++++|++.+++.++ +.|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 777777777777777777764 34 33 3466777777788888888888888876 3565 35666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHH
Q 039931 609 HGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVT 672 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 672 (783)
.+|...| ...++++...+ ..+...|..... ...+.+++|+..+++.++ +.|+...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~--l~p~~~~ 215 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA-KADAAFKKAVDYLGEAVT--LSPNRTE 215 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH-HHHHHHHHHHHHHHHHhh--cCCCCHH
Confidence 7775544 33344444322 123334433332 123678889999988888 4565543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-09 Score=116.93 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 322 TLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
..++.|...|.+.|++++|++.|++.++..+. +..+|+.+...|.+.|++++|++.|++..+.+. -+...|..+...+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 34444555555555555555555555544322 344555555555555555555555555554321 1344455555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
...|++++|++.|++.++.... +...++.+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555554322 4445555555555555555555555555554332 3445555555555555555555
Q ss_pred HHHHHH
Q 039931 482 GVFLEM 487 (783)
Q Consensus 482 ~~~~~m 487 (783)
+.+++.
T Consensus 166 ~~~~ka 171 (723)
T 4gyw_A 166 ERMKKL 171 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-08 Score=101.69 Aligned_cols=204 Identities=11% Similarity=-0.119 Sum_probs=120.1
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 039931 540 GFCKQGRMKPAIDAFMDMYRT----GLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYAG----GLDP-DITTYNIRMH 609 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~ 609 (783)
.|...|++++|...|.+..+. |-+++ ..+|+.+...|.+.|++++|+..+++.++. |-.+ -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777777666665532 21111 346666777777777777777777666551 1000 1345777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 039931 610 GYCNI-RKMNQAAMMLDELVSAGI-VPN----TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV------VTTNVL 676 (783)
Q Consensus 610 ~~~~~-g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~------~~~~~l 676 (783)
.|... |++++|+..|++.++... ..+ ..++..+...+.. |++++|+..++++++....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 78775 888888888887765210 011 1234455444444 7888888888887773211111 145666
Q ss_pred HHHHHhcCChhhHHHHHHHHhhcCCCCCHH----HHHHHHHHHhh-hhHHHHHHHHHHhcCCCcchhhhHHH
Q 039931 677 LSHFCKQGMPEKTLLWGQKLSEISFDFDET----SYKIMDRAYHN-IQENAEFFQETSEKSLFLDFLMGCMT 743 (783)
Q Consensus 677 l~~~~~~g~~~~A~~~~~~~~~~~~~~d~~----~~~~l~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (783)
...+...|++++|+..+++++++.|..... .+..++.+|.. -.+.++.+.+.+++++.++|....++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 667888899999999999998888762221 23444555432 13556777777788888887654443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-07 Score=92.05 Aligned_cols=178 Identities=11% Similarity=-0.013 Sum_probs=99.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 445 AQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF-VPNNFAYNSLIAGFCNRGKLNEALKLEREMR 523 (783)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (783)
|+..|++....+ .++..++..+...+...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555565555443 23444445566666666777777777766655432 1234455566666677777777777777766
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 524 QKGLLP-----DNFTFNIIING--FCKQG--RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 524 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 23444444444 22223 677777777776553 34433333444466677777777777765543
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 595 G-----GL---DP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 595 ~-----g~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
. .. .| |..+...+|......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 13 44555455555555565 66677777765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-06 Score=95.04 Aligned_cols=388 Identities=12% Similarity=-0.007 Sum_probs=195.4
Q ss_pred cC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhh
Q 039931 152 VG-DYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALG 230 (783)
Q Consensus 152 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (783)
.| +++.|..+|+.++..-| . |+++.+..+|++.+.. .|++..|...+....+.+...+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P--~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~--- 65 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYM--S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKF--- 65 (493)
T ss_dssp -----CCHHHHHHHHHHHHH--T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-------
T ss_pred cCcchHHHHHHHHHHHHHCC--C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHH---
Confidence 45 36667777777665422 2 6677777777777764 3677777777776666553211
Q ss_pred hccchHHHHHHHHHC-CCCC-ChHHHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc---cCC
Q 039931 231 KCGAGRMIFDMIQEE-GLSP-NVVVYNALLNGYV----KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK---YGG 301 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~-g~~p-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~ 301 (783)
..+.+|+..... |..| +...|...+..+. ..++.+.+.++|++.+.. ++. .+..+-..|.. ..+
T Consensus 66 ---~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~ 138 (493)
T 2uy1_A 66 ---KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELN 138 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhc
Confidence 125667766543 4333 6677888877654 346788899999999874 211 11222221111 111
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----HHH
Q 039931 302 MEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG--L-----EEN 374 (783)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~ 374 (783)
...+..+..+. .+.+..|..+++.+...-...+...|...+.--...+ - .+.
T Consensus 139 ~~~~~~~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 139 KITGKKIVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred cccHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 11222222111 1123334444443332100012223433333211110 0 223
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 375 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
+..+|+++.... +.+...|...+..+.+.|+++.|..++++.+.. +.+...+.. |....+.++ +++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~---~~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA---VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH---HHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH---HHHHHHH
Confidence 444555555432 223445555555555555666666666655555 222222111 111111111 0111110
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
.+.. ...+.+ .. .. .......|...+....+.+..+.|..+|+.. +. ...+...|
T Consensus 268 ---------------~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 268 ---------------KYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp ---------------HTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred ---------------HHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 0000 000000 00 00 0011244556666666677788888888888 32 22344445
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039931 535 NIIINGFCKQG-RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN 613 (783)
Q Consensus 535 ~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 613 (783)
...+..-...+ +.+.|..+|+..++.. +-+...|...++...+.|+.+.|..+|+++. .....|...+..-..
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 43333322333 6888999999888752 2234556667777778899999999998873 256778888877778
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 614 IRKMNQAAMMLDELVS 629 (783)
Q Consensus 614 ~g~~~~A~~~~~~m~~ 629 (783)
.|+.+.+..+++++.+
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999888888763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-07 Score=91.80 Aligned_cols=186 Identities=10% Similarity=-0.001 Sum_probs=121.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039931 515 ALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV-PDIVTYNTLIGGYCKALDIVRADELVNKMY 593 (783)
Q Consensus 515 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 593 (783)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..|-. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777766654 345555567777888888888888888887665421 245677777888888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Q 039931 594 AGGLDP-----DITTYNIRMHG--YCNIR--KMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC-CDILDRAIIIAAKLLK 663 (783)
Q Consensus 594 ~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~A~~~~~~~~~ 663 (783)
+ ..| +..+...|..+ ....| ++++|..+|+++.+. .|+..+-..++.++. .|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 356 24555555544 33334 888888888887653 355222222222222 2788888888876654
Q ss_pred c-----CC---CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 664 M-----AF---VPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 664 ~-----~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
. .- .|+ ..+...++......|+ +|.++++++.+..|+ ++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-hp~i~ 290 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-HAFIK 290 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-CHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-ChHHH
Confidence 2 00 243 3555456555566776 888999999999976 55443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-08 Score=99.18 Aligned_cols=199 Identities=8% Similarity=-0.066 Sum_probs=122.1
Q ss_pred HHHhcCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-CHHhHHHHHH
Q 039931 148 SLLRVGDYGSVWKLFRDMIHL----GPRPS-NYTFNALILGFCRNGCIRIGESLLHVMHKY----MCVA-DFFAYNILIN 217 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~ 217 (783)
.|...|++++|.+.|.+.+.. |..++ ..+|+.+..+|...|++++|+..+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566677776666666553 11111 346677777777777777777777766542 1000 1356778888
Q ss_pred HHHhc-CCcchHhhhccchHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh------HH
Q 039931 218 AYCIR-GQTSYALGKCGAGRMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV------TF 289 (783)
Q Consensus 218 ~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~ 289 (783)
.|... |++++|+..+++|.+++.. .+-.+. ..+++.+...|.+.|++++|+..|++..+........ +|
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 88886 9999998777666665543 111111 3568889999999999999999999998864432221 45
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCC-c---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 039931 290 NIIVSGHCKYGGMEDGDRLLRDLSVSGLLP-N---CTLYDITVAGLC--WAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 290 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 349 (783)
..+..++...|++++|...+++..+..... + ...+..++..+. ..+++++|+..|+++..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 666667777888888888888776643221 1 112233333333 23446666666555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-08 Score=92.45 Aligned_cols=176 Identities=7% Similarity=0.031 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITI----------------LFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----------------ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
.+-.....+.+.|++++|+..|+++++.+ +.+...|.. +...+.+.|++++|+..|++.++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44455667788999999999999998875 334556666 8888999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
| .+...+..+...+...|++++|...|++.++.. +.+..++..+...|...|+.+.+ .+...+..... ..|
T Consensus 85 p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~-----~~~~~~~~~~~--~~~ 155 (208)
T 3urz_A 85 P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK-----KLETDYKKLSS--PTK 155 (208)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH-----HHHHHHC---C--CCH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHhC--CCc
Confidence 6 677888889999999999999999999988765 45677888888887665543322 11233333322 122
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIV 293 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 293 (783)
....+..+..++...|++++|+..|++.++. .|+......+.
T Consensus 156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 2334444555666778888888888888765 56655444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=82.77 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445555566666666666666666554322 45556666666666666666666666666542 2345556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666777766666666532 22455666666667777777777777766654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-06 Score=91.27 Aligned_cols=355 Identities=7% Similarity=-0.066 Sum_probs=186.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC-hhHHHHHHHHHHhC-CCC-CcHHHHHHHHHHHH----hcCCH
Q 039931 265 RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG-MEDGDRLLRDLSVS-GLL-PNCTLYDITVAGLC----WAGRL 337 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~----~~g~~ 337 (783)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+.++.. |.. .+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888887764 4677777777776666553 34566667666543 432 35566666665433 23567
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 338 DEAMEFFEDMFEKGISPSI-FAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 338 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
+.+..+|++.+..... +. ..|..... +.+..+...+.+++.+.. +.+..|..+++.
T Consensus 106 ~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 7788888888763111 11 11111111 111111111221111110 112222222222
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 417 MIEKGFPINKVAFTVLLDGYFRIG-------DLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
+...-...+...|...+..-...+ ..+.+..+|+++....+. +...|...+..+.+.|+.++|..++++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221100012233433333322110 023345566666554322 456666666666666777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK---------G---LLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
. +.+...+. .|....+.++. ++.+.+. + .......|...+....+.+..+.|..+|+.+
T Consensus 242 ~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5 22222222 12221111111 1111111 0 0112356777777777888999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 558 YRTGLVPDIVTYNTLIGGYCK-ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
+.. ..+...|......-.. .++.+.|..+|+...+. .+-+...+...++...+.|+.+.|..+|+++. ...
T Consensus 313 -~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~ 384 (493)
T 2uy1_A 313 -GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS 384 (493)
T ss_dssp -TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred -hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence 321 1233444332222222 34699999999999884 22245566777888889999999999999972 245
Q ss_pred HHHHHHHHHHhh-ccHHHHHHHHHHHH
Q 039931 637 VTYNTLMNGVCC-DILDRAIIIAAKLL 662 (783)
Q Consensus 637 ~~~~~li~~~~~-~~~~~A~~~~~~~~ 662 (783)
..|...+.--.. |..+.+.++++++.
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666653222 78888888887755
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-07 Score=83.05 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
.+..+...|...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...|+++...++ .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 57788899999999999999999998876 45778899999999999999999999999998865 56778889999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
..|++++|...++++.+.. +.+..++..+...+.+.|++++| ...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A-------~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEA-------IEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH-------HHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHH-------HHHHHHHHc
Confidence 9999999999999998765 45678889999999999999999 566666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-06 Score=86.06 Aligned_cols=221 Identities=9% Similarity=-0.037 Sum_probs=152.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG--DYGSVWKLFRDMIHLGPRPSNYTFNALILGF----CRN--- 187 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 187 (783)
....++|+..++.++..+ +.+..+||.-...+...| +++++++.++.++...| .+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 334468888888888876 456677888888888888 88888888888888776 4555666665555 555
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc--hHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTS--YALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
+++++++.+++++.+.. +.|..+|+--.-.+.+.|..+ ++ ...++.+.+..+. |-.+|+.....+.+.+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~E-------L~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKE-------LSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHH-------HHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHH-------HHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 67888888888888765 567778877777777777776 66 4567777765544 7788888777777766
Q ss_pred C------hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhH-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCC
Q 039931 266 D------IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMED-GDRLLRDLSVSG--LLPNCTLYDITVAGLCWAGR 336 (783)
Q Consensus 266 ~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~ 336 (783)
+ ++++++.+++++...+. |...|+.+-..+.+.|+... ...+..++...+ -..+...+..+...|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 78888888888877554 77777777777767666433 444555544322 12244555556666666666
Q ss_pred HHHHHHHHHHHHH
Q 039931 337 LDEAMEFFEDMFE 349 (783)
Q Consensus 337 ~~~A~~~~~~m~~ 349 (783)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=94.05 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPIN---KVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 392 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
..+..+...+.+.|++++|+..|+++++.... + ...+..+..++.+.|++++|+..|++..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33444444444555555555555555444221 2 33444444444445555555555544444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=93.89 Aligned_cols=171 Identities=10% Similarity=0.031 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC-HH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS---ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR-PS-NY 175 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~-~~ 175 (783)
+.++..+-.+...+.+.|++++|...|+++++.. +.+ ..++..+...+.+.|++++|+..|++.++..|. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4567788889999999999999999999999875 334 678889999999999999999999999998653 22 45
Q ss_pred HHHHHHHHHHh--------cCChhhHHHHHHHHHhCCCCCCHHhH-----------------HHHHHHHHhcCCcchHhh
Q 039931 176 TFNALILGFCR--------NGCIRIGESLLHVMHKYMCVADFFAY-----------------NILINAYCIRGQTSYALG 230 (783)
Q Consensus 176 ~~~~l~~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~A~~ 230 (783)
++..+..++.. .|++++|...|+++.+.. +.+.... ..+...|.+.|++++|
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-- 167 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA-- 167 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH--
Confidence 67788888888 999999999999998764 2233333 4567888999999999
Q ss_pred hccchHHHHHHHHHCCCCC--ChHHHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 039931 231 KCGAGRMIFDMIQEEGLSP--NVVVYNALLNGYVKA----------RDIDQANMLYEEMRSR 280 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 280 (783)
...++...+..... ....+..+...|.+. |++++|...|+++.+.
T Consensus 168 -----~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 168 -----AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp -----HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 46677666543221 235677788888866 8889999999999886
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-07 Score=89.11 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcC
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKAL 580 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 580 (783)
+...+.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++.++. .| +..+|..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 556666667777777777766665433 5666666667777777777777777776664 34 4556666666665443
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 581 D--IVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLM 643 (783)
Q Consensus 581 ~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 643 (783)
+ .+.+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3 3334444444432 122223344445556666777777777777664 456655444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-06 Score=84.70 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=138.3
Q ss_pred HHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hh
Q 039931 149 LLRVGDY-GSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG--CIRIGESLLHVMHKYMCVADFFAYNILINAY----CI 221 (783)
Q Consensus 149 l~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~ 221 (783)
..+.|.+ ++|+..++.++..+| .+...|+.-...+...| ++++++..++.++... +.+..+|+.-...+ .+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3344444 689999999999876 67778999999999999 9999999999998865 44556666555555 44
Q ss_pred c---CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 039931 222 R---GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID--QANMLYEEMRSRDIAPDAVTFNIIVSGH 296 (783)
Q Consensus 222 ~---g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 296 (783)
. ++.+++ ..+++.+.+...+ |-.+|+.-.-.+.+.|+++ ++++.++++.+.++. |...|+.-...+
T Consensus 120 l~~~~~~~~E-------L~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll 190 (306)
T 3dra_A 120 NNNDFDPYRE-------FDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLL 190 (306)
T ss_dssp TTTCCCTHHH-------HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred ccccCCHHHH-------HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4 566666 4566777665433 7788888888888888887 888888888887655 666776665555
Q ss_pred HccCC------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q 039931 297 CKYGG------MEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLD-EAMEFFEDMFEKG--ISPSIFAFNSIIAAYS 367 (783)
Q Consensus 297 ~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g--~~p~~~~~~~li~~~~ 367 (783)
...+. ++++.+.++.++...+. |...|+-+-..+.+.|+.. ++..+.+++.+.+ -..+...+..+...|.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 55444 44455555544444322 4444444444444444422 2333333333221 0113444444444444
Q ss_pred HcCCHHHHHHHHHHHH
Q 039931 368 RAGLEENAFEAYKIMH 383 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~ 383 (783)
+.|+.++|.++++.+.
T Consensus 270 ~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 270 QQKKYNESRTVYDLLK 285 (306)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4445555555554444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.9e-08 Score=108.52 Aligned_cols=174 Identities=9% Similarity=-0.074 Sum_probs=133.7
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 115 LRVEMSAEVMEILYRMR--------EVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
...|++++|++.+++++ +.. +.+...+..+...+...|++++|+..|+++++.++ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67889999999999988 544 45677888889999999999999999999998766 677888889999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD 266 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 266 (783)
.|++++|...|++..+.. +.+...+..+...|.+.|++++ +.. +++..+... .+..+|..+...+.+.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~-------~~~al~~~P-~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKF-------YQTVWSTND-GVISAAFGLARARSAEGD 549 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCH-------HHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHH-------HHHHHHhCC-chHHHHHHHHHHHHHcCC
Confidence 999999999999988765 4467788888888999999888 753 344333322 266788888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 267 IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
+++|++.|++..+.+.. +...+..+..++...++
T Consensus 550 ~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 550 RVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999999988775322 34566666666655444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-07 Score=108.47 Aligned_cols=167 Identities=7% Similarity=-0.134 Sum_probs=86.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 507 CNRGKLNEALKLEREMR--------QKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
...|++++|++.+++.. +... .+...+..+...+.+.|++++|...|+++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666665 3221 244555555666666666666666666666532 2245556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh-ccHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC-DILDRAI 655 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~-~~~~~A~ 655 (783)
.|++++|++.|++.++ +.| +...|..+..+|.+.|++++ ++.|++.++. .|+. ..|..+...+.. |++++|+
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665 234 34555566666666666666 6666655542 2322 233333333332 4555555
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 039931 656 IIAAKLLKMAFVPNV-VTTNVLLSHFCK 682 (783)
Q Consensus 656 ~~~~~~~~~~~~p~~-~~~~~ll~~~~~ 682 (783)
..++++++ +.|+. ..|..+..++..
T Consensus 555 ~~~~~al~--l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTSCT--TSTTHHHHHHHHHHHTC-
T ss_pred HHHHhhcc--cCcccHHHHHHHHHHHHc
Confidence 55555544 33433 334444444333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-08 Score=89.68 Aligned_cols=161 Identities=10% Similarity=-0.028 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG-FC 185 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 185 (783)
+..+...+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|+..|+++....| +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3344455556666666666666655543 34455555666666666666666666665555433 33222221111 11
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
..+...+|...+++..+.. +. +...+..+...+.+.|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~------------------------------------------~~~~~~~la~~~~~~g 122 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PD------------------------------------------NFELACELAVQYNQVG 122 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TT------------------------------------------CHHHHHHHHHHHHHTT
T ss_pred hhcccchHHHHHHHHHHhC-CC------------------------------------------CHHHHHHHHHHHHHcc
Confidence 1111122333333333321 11 3455555555555666
Q ss_pred ChhHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 266 DIDQANMLYEEMRSRDIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
++++|...|+++.+..+.+ +...+..+...+...|+.++|...|++..
T Consensus 123 ~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 123 RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6666666666555543322 23345555555555566666655555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-08 Score=87.19 Aligned_cols=143 Identities=7% Similarity=-0.137 Sum_probs=81.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhh
Q 039931 113 GYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRI 192 (783)
Q Consensus 113 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 192 (783)
.+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++..| .+..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 3444566666666666655432 12233445566666666677777777666666654 456666666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 193 GESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 193 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
|...|++..+.. +.+..++..+...|.+.|+.++|. ...+++..+..+ -+..+|+.....+.+.|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa------~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA------KYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH------HHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH------HHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 777666666553 334566666666666666665542 222344333221 14455555555555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-07 Score=91.61 Aligned_cols=167 Identities=11% Similarity=-0.027 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH-H
Q 039931 137 PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI-L 215 (783)
Q Consensus 137 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 215 (783)
.+...+..+...+.+.|++++|...|++.++..| .+...+..+...+...|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 3445566666677777777777777777777655 456667777777777777777777777765542 44332222 2
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhHHHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAP-DAVTFNIIVS 294 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 294 (783)
...+...++.++| ...+++..+..+ .+...+..+...|...|++++|++.|+++.+..... +...+..++.
T Consensus 192 ~~~l~~~~~~~~a-------~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 192 QIELLXQAADTPE-------IQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHTSCHH-------HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHhhcccCcc-------HHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 2234555666656 344555444332 256777777777777788888887777777753321 2456777777
Q ss_pred HHHccCChhHHHHHHHHHHh
Q 039931 295 GHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~ 314 (783)
.+...|+.++|...+++...
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 77777777777777766543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-06 Score=82.86 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 509 RGKLNEALKLEREMRQ 524 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~ 524 (783)
.+++++|...|++..+
T Consensus 142 ~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSS 157 (212)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3344444444444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=83.80 Aligned_cols=175 Identities=12% Similarity=-0.022 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHH
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG----LVDEAYGVFL 485 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 485 (783)
|.+.|++..+.| ++..+..+...|...+++++|++.|++..+.| ++..+..+...|.. + +.++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 45555556666666666666666666665543 44555555555555 4 5666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 039931 486 EMSRIGFVPNNFAYNSLIAGFCN----RGKLNEALKLEREMRQKGLL-PDNFTFNIIINGFCK----QGRMKPAIDAFMD 556 (783)
Q Consensus 486 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 556 (783)
+..+.| +...+..|...|.. .+++++|.++|++..+.|.. .++..+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 55666666666666655321 014555555555555 5566666666666
Q ss_pred HHHcCCCCChhHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 039931 557 MYRTGLVPDIVTYNTLIGGYCKA-L-----DIVRADELVNKMYAGG 596 (783)
Q Consensus 557 m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 596 (783)
..+. .++...+..|...|... | ++++|...+++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6553 12334455555555432 2 5666666666655543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-07 Score=85.65 Aligned_cols=163 Identities=10% Similarity=-0.001 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCI 221 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 221 (783)
+..+...+.+.|++++|...|++.++..| .+...+..+...+...|++++|...+++..+.. |+...+..+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~---- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAK---- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHH----
Confidence 44556667777777777777777766654 456667777777777777777777777665432 23221111000
Q ss_pred cCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 222 RGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 222 ~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
+ .+.+.++..+|+..|++..+..+. +...+..+...+...|+
T Consensus 82 ------------------------------------~-~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 82 ------------------------------------L-ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGR 123 (176)
T ss_dssp ------------------------------------H-HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------H-HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 0 001112223567888888776432 67888999999999999
Q ss_pred hhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 302 MEDGDRLLRDLSVSGLLP-NCTLYDITVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
+++|...++++.+..+.+ +...+..+...+...|+.++|...|++.+.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999886653 456888899999999999999999998765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=83.86 Aligned_cols=189 Identities=9% Similarity=-0.021 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--HHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN--YTFNA 179 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 179 (783)
+..+-.+...+.+.|++++|...|+++++...... ..++..+..++.+.|++++|+..|+++++..|.... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 45677778889999999999999999998653221 367888999999999999999999999998764322 24555
Q ss_pred HHHHHHh------------------cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHH
Q 039931 180 LILGFCR------------------NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 180 l~~~~~~------------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~ 241 (783)
+..++.. .|++++|...|+++++.. +.+..++...... ..+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l-----------------~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL-----------------VFLKDR 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH-----------------HHHHHH
Confidence 5555544 678999999999999764 2233333222111 111111
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 039931 242 IQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPD--AVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL 318 (783)
Q Consensus 242 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 318 (783)
+.+ ....+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|+.++|.+.++.+...++.
T Consensus 146 ~~~--------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 146 LAK--------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHH--------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHH--------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 111 234567788899999999999999988632211 245778888999999999999999988876543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=94.39 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=96.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLR-VGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
.|++++|.+++++..+... .+ +.+ .++++.|...|.+. +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667788888877665421 11 112 46777777777665 345667788888888
Q ss_pred HHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhH
Q 039931 196 LLHVMHKY----MCVA-DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQ 269 (783)
Q Consensus 196 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 269 (783)
.|.+..+. +-.+ -..+|+.+...|.+.|++++|+..+++|..++... |-.+ -..+++.+...|.+ |++++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 88776543 1111 13467777777778888888876665555554322 1111 13466667777766 77888
Q ss_pred HHHHHHHHHhCCCCC-C----HhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 270 ANMLYEEMRSRDIAP-D----AVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 270 A~~~~~~m~~~g~~p-~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
|+..|++..+..... + ..++..+...+.+.|++++|...|++..
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 877777765421000 0 2234444444445555555555444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-07 Score=90.18 Aligned_cols=168 Identities=7% Similarity=-0.046 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
|.+...+..+...+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|...|+++....| .+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHH
Confidence 4455566677777777778888888777777765 45667777777777777888888877777766554 222233333
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC-CChHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS-PNVVVYNALLN 259 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~ 259 (783)
...+...++.++|...+++..+.. +.+...+..+...|...|++++| ...+.++.+.... .+...+..++.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A-------~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEA-------LELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHH-------HHHHHHHHhcccccccchHHHHHHH
Confidence 334556677777777777776654 45667777777777777777777 4566666554322 12556777777
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 039931 260 GYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m~ 278 (783)
.|...|+.++|...|++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 7777777777777776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-07 Score=81.16 Aligned_cols=133 Identities=9% Similarity=-0.023 Sum_probs=107.3
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 89 MVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
.+..+.......|.++..+-.|...|.+.|++++|++.|+++++.+ +.+..+|..+...+.+.|++++|+..|++.++.
T Consensus 16 ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 16 YIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3444444443334445567789999999999999999999999987 568899999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 039931 169 GPRPSNYTFNALILGFCRNGCIRIGESL-LHVMHKYMCVADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (783)
.| .+..++..+...+.+.|++++|... +++..+.. +.+..+|......+...|+
T Consensus 95 ~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 95 NP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 76 6788999999999999999887665 58887764 4566777777777666664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-06 Score=81.61 Aligned_cols=189 Identities=8% Similarity=-0.055 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH--HHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA-P-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNC--TLYD 325 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 325 (783)
+...+..+...+.+.|++++|+..|+++.+..+. | ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667777888999999999999999876332 1 1356777888899999999999999998876543221 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 039931 326 ITVAGLCW------------------AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGL 387 (783)
Q Consensus 326 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 387 (783)
.+...+.. .|+.++|...|+++++..+. +...+....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH----
Confidence 33333433 45677777777777765322 222222111100 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 039931 388 TPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPIN--KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI 457 (783)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 457 (783)
.....+...+.+.|++++|+..++++++..+... ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0113456678888999999999999888743311 25677888899999999999999988887644
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.9e-07 Score=99.73 Aligned_cols=154 Identities=14% Similarity=-0.059 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESL 196 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 196 (783)
.|++++|...|+++++.. +.+...+..+...+.+.|++++|.+.|++.++..+ .+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366778888888877765 45567788888888888888888888888887755 5677778888888888888888888
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CChhHHHHH
Q 039931 197 LHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA---RDIDQANML 273 (783)
Q Consensus 197 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~ 273 (783)
+++..+.. +.+...+..+...|.+.|++++|+ +.+++..+... .+..++..+...+.+. |++++|.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~-------~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAA-------AAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 88877654 345677777888888888887774 45555544332 2566777788888888 888888888
Q ss_pred HHHHHhCC
Q 039931 274 YEEMRSRD 281 (783)
Q Consensus 274 ~~~m~~~g 281 (783)
+++..+.+
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 88887764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-06 Score=83.61 Aligned_cols=190 Identities=11% Similarity=-0.061 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIR 607 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 607 (783)
+...+..+...+.+.|++++|...|++.++. .| +...|..+...|.+.|++++|.+.+++..+. .| +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4567777888888999999999999998875 35 6788888999999999999999999998873 45 56788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAG----IVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQ 683 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 683 (783)
..+|...|++++|...|++.++.. ..-+...+..+. ..++... .+.......++......+. . ...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~i~~~l~-~-l~~ 148 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-------IAKKKRW-NSIEERRIHQESELHSYLT-R-LIA 148 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-------HHHHHHH-HHHHHTCCCCCCHHHHHHH-H-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------HHHHHHH-HHHHHHHHhhhHHHHHHHH-H-HHH
Confidence 999999999999999999887521 111111222111 1111111 1122222344444444443 2 337
Q ss_pred CChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCC
Q 039931 684 GMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLF 734 (783)
Q Consensus 684 g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 734 (783)
|++++|++.++++.+.+|+ +......+...+...++.++.++++.+++.+
T Consensus 149 ~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999998876 6666666666665556777788887766554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.6e-07 Score=91.01 Aligned_cols=203 Identities=8% Similarity=-0.131 Sum_probs=116.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhh
Q 039931 152 VGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGK 231 (783)
Q Consensus 152 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 231 (783)
.|++++|.+++++..+.... . + +...+++++|...|.+. ...|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 56778888888877664321 1 0 11147788888777765 3567788999999776
Q ss_pred ccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCChhHH
Q 039931 232 CGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQANMLYEEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDG 305 (783)
Q Consensus 232 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A 305 (783)
+.++.++.... |-.+ -..+|+.+...|.+.|++++|+..|++..+. |-.+ -..++..+...|.. |++++|
T Consensus 59 ~~~al~~~~~~---~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 59 YLQEAEAHANN---RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 66666665443 1111 1457888888888999999999998887643 1110 12345556666666 777777
Q ss_pred HHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHcCCHHHH
Q 039931 306 DRLLRDLSVSGLLP-----NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG----ISPS-IFAFNSIIAAYSRAGLEENA 375 (783)
Q Consensus 306 ~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~A 375 (783)
.+.+++........ ...+++.+...|.+.|++++|+..|++..... ..++ ...+..++..+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 77666655421100 12344555555555666666666555554421 0001 11334444444445555555
Q ss_pred HHHHHHHH
Q 039931 376 FEAYKIMH 383 (783)
Q Consensus 376 ~~~~~~m~ 383 (783)
...|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=97.86 Aligned_cols=152 Identities=9% Similarity=-0.086 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 039931 370 GLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLW 449 (783)
Q Consensus 370 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 449 (783)
|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55566666666655542 123455555666666666666666666666555322 4555555666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 039931 450 NELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNR---GKLNEALKLEREMRQK 525 (783)
Q Consensus 450 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 525 (783)
++..+.... +...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 665554332 45555555556666666666666666555532 22344555555555555 5566666665555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.2e-07 Score=76.49 Aligned_cols=111 Identities=5% Similarity=-0.147 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
....+..+...|.+.|++++|+..|++.++.+ +.+..+|..+...+.+.|++++|+..|++.++.+| .+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHH
Confidence 34578889999999999999999999999887 56789999999999999999999999999999876 67889999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILI 216 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (783)
++...|++++|...|++.++.. +.+...+..|.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 9999999999999999998864 34455554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-07 Score=92.12 Aligned_cols=194 Identities=11% Similarity=-0.061 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
.+...+..+...+.+.|++++|...|+++++.. +.+...|..+...+.+.|++++|+..|+++++..+ .+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345678888889999999999999999988875 45778888899999999999999999999988765 5777888889
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADF-FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
.++...|++++|...|++..+.. |+. ..+...+....+..+ ...+.........++......+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAK-----------KKRWNSIEERRIHQESELHSYLTRL 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHH-----------HHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998887643 211 111111111111110 1122223333334444444444322
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHH-HHHHHHHHcc-CChhHHHHHHHHHHh
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTF-NIIVSGHCKY-GGMEDGDRLLRDLSV 314 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~-g~~~~A~~~~~~~~~ 314 (783)
..|++++|++.+++..+. .|+.... ..+-..+.+. +..++|.++|..+.+
T Consensus 147 --~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 --IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp --HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 257777777777776654 3443322 2222222222 445555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-05 Score=76.80 Aligned_cols=191 Identities=9% Similarity=-0.037 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
+++.+-....+.+..++|+.++++++..+ +.+..+|+.--..+...| .+++++.+++.++...| .+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 34444444445556678999999999887 566777888888888888 59999999999998876 6777888888877
Q ss_pred Hhc-C-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH-hhhccchHHHHHHHHHCCCCCChHHHHHHHHHH
Q 039931 185 CRN-G-CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA-LGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGY 261 (783)
Q Consensus 185 ~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 261 (783)
... + ++++++++++++.+.. +.|..+|+--.-.+.+.|..+.+ ...+.++.+..+++.+..+. |..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 776 7 8899999999998765 56777777766666666655500 00111225677777776544 889999998888
Q ss_pred HhcCC-------hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 262 VKARD-------IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 262 ~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
.+.++ ++++++.++++....+. |...|+-+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 88876 68899999988887544 67777776665555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-06 Score=71.99 Aligned_cols=115 Identities=16% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
..++..+...|.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++....+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 5678899999999999999999999998876 46788899999999999999999999999998865 578889999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCI 221 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 221 (783)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999998764 3455556555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.7e-07 Score=79.18 Aligned_cols=108 Identities=7% Similarity=-0.107 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
..|.++..+..+...+.+.|++++|...|+++++.+ +.+...|..+..++.+.|++++|+..|+++++..| .++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHH
Confidence 345567789999999999999999999999999987 56889999999999999999999999999999877 5777888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFF 210 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 210 (783)
.+..++...|++++|...|++..+.. ||..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999999998864 5543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.8e-05 Score=76.27 Aligned_cols=171 Identities=8% Similarity=-0.075 Sum_probs=125.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-CcchHh
Q 039931 153 GDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG-CIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-G-QTSYAL 229 (783)
Q Consensus 153 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~ 229 (783)
+..++|++++++++..+| .+..+|+.-...+...| .+++++.+++.+++.. +.+..+|+.-...+.+. + +.+++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E- 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE- 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH-
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH-
Confidence 455689999999999876 67778999988898889 5999999999999875 56777888887777776 6 77766
Q ss_pred hhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 230 GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID--------QANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 230 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
..+++.+.+...+ |-.+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 145 ------L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 145 ------IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp ------HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred ------HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 5678888776543 8889988877777777777 899999999987655 77788887777766665
Q ss_pred -------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 302 -------MEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 302 -------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
++++.+.++++....+. |...|+-+-..+.+.|
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 45555555555554322 4444444444444333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-06 Score=77.43 Aligned_cols=134 Identities=13% Similarity=-0.004 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+...|++++|...|++.++.. +.+..++..+...+...|++++|+..|++.++..+ .+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3568888999999999999999999998876 45788899999999999999999999999999865 678889999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCCcchHhhhccchHHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAY--NILINAYCIRGQTSYALGKCGAGRMIFD 240 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~a~~~~~ 240 (783)
+...|++++|...+++..+.. +.+...+ ..++..+.+.|++++|+..++.+..+++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 999999999999999998764 3344455 3344447777888888655544444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=74.56 Aligned_cols=113 Identities=10% Similarity=0.043 Sum_probs=79.3
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHH
Q 039931 597 LDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVT 672 (783)
Q Consensus 597 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~ 672 (783)
+.|+. ..+......|.+.|++++|++.|++.++. .|+ ...|..+...+.. |++++|+..++++++ +.| +...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHH
Confidence 34432 45666677777777777777777776652 333 3444444444443 677777777777776 345 4567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 673 TNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 673 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
|..+...|...|++++|++.++++++++|+ +..++..|.+.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHh
Confidence 888888999999999999999999999987 88888777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-06 Score=73.26 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 45678899999999999999999999998875 45788899999999999999999999999999865 56888999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQT 225 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (783)
.+...|++++|...+++..+.. +.+...+..+...+.+.|+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998764 45677888888888777765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-06 Score=73.29 Aligned_cols=120 Identities=5% Similarity=-0.131 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
+.++..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|+..|+++++..+ .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 4567789999999999999999999999999876 45788899999999999999999999999999865 578889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRG 223 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (783)
..++...|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998764 334566666666665544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-05 Score=80.22 Aligned_cols=163 Identities=11% Similarity=-0.070 Sum_probs=87.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHh----HHHHHHHHHHccCChhHHHHHHHHHHhCCCC-Cc----HHHHH
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSRDI-APDAV----TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-PN----CTLYD 325 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 325 (783)
..+..+...|++++|.+.+++..+... .|+.. .+..+...+...|++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888889999998888876422 12211 2223444555566677777777766653222 11 22456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHH
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEK-----GISPS-IFAFNSIIAAYSRAGLEENAFEAYKIMHQF----GLTPS-SCTC 394 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~ 394 (783)
.+...|...|++++|...|++..+. +..+. ..++..+...|.+.|++++|+..+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6666666666666666666666531 11111 224555555666666666666655554431 11111 3344
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHH
Q 039931 395 SSLLVGLCKKGR-LPEAWDLLCKMI 418 (783)
Q Consensus 395 ~~li~~~~~~g~-~~~a~~~~~~~~ 418 (783)
..+...+.+.|+ .++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 455555555553 355555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-05 Score=79.30 Aligned_cols=165 Identities=13% Similarity=0.004 Sum_probs=110.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN------FAYNSLIAGFCNRGKLNEALKLEREMRQKGL---LPD--N 531 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~p~--~ 531 (783)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566677788888888888777664311 11 1233455556677888888888888765321 111 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-
Q 039931 532 FTFNIIINGFCKQGRMKPAIDAFMDMYRT-GLVPD-----IVTYNTLIGGYCKALDIVRADELVNKMYAG----GLDPD- 600 (783)
Q Consensus 532 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 600 (783)
.+++.+...|...|++++|...|+++.+. ...|+ ..++..+...|...|++++|++.+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47778888888888888888888887621 01122 257778888888888888888888887652 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 039931 601 ITTYNIRMHGYCNIRKMNQA-AMMLDELV 628 (783)
Q Consensus 601 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 628 (783)
..+|..+..+|.+.|++++| ...+++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56778888888888888888 66677665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-05 Score=78.05 Aligned_cols=127 Identities=13% Similarity=0.005 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCC-hhHHH
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKGLL-PD----NFTFNIIINGFCKQGRMKPAIDAFMDMYR----T-GLVPD-IVTYN 570 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~ 570 (783)
+...+...+++++|...+++..+.... ++ ..+++.+...|...|++++|...|+++++ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333444444555555555555442111 11 22455555555566666666665555552 1 11111 23556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 039931 571 TLIGGYCKALDIVRADELVNKMYA----GGLDPD-ITTYNIRMHGYCNIRK-MNQAAMMLDELV 628 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 628 (783)
.+...|.+.|++++|.+.+++..+ .+..+. ..+|..+..+|.+.|+ +++|.+.+++.+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 666666666666666666665554 121222 4566666677777773 577777666665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=76.61 Aligned_cols=126 Identities=13% Similarity=-0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...|++.++.. +.+...|..+...|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555566666666666666552 3456666666666666666666666666666542 2345566666666667
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGG--------------LDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.|++++|.+.+++..+.. ..| +...+..+..+|.+.|++++|...|++.++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777776666521 111 125677777788888888888888887776
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-05 Score=76.29 Aligned_cols=129 Identities=6% Similarity=-0.118 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..+..+...+...|++++|+..|++.. .|+..++..+...+.+.|++++|+..|++.++..+ .+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 346677888999999999999999874 56888999999999999999999999999999865 6788999999999
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCC----------------HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVAD----------------FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
...|++++|...|++..+.. +.+ ...+..+...|.+.|++++| ...++...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA-------EEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH-------HHHHHHHHHcC
Confidence 99999999999999998754 222 37888999999999999999 56778777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-05 Score=78.38 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--H
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI------VTYNTLIGGYCKALDIVRADELVNKMYAGG---LDPD--I 601 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~ 601 (783)
.+...+..+...|++++|.+.+.+..+... ... ..+..+...+...|++++|++.+++..+.. ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344455566677777777777776665421 111 123334455566677777777777776521 1111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHhh-ccHHHHHHHHHHHHHc----CCCCC-
Q 039931 602 TTYNIRMHGYCNIRKMNQAAMMLDELVSA-GIVPNT-----VTYNTLMNGVCC-DILDRAIIIAAKLLKM----AFVPN- 669 (783)
Q Consensus 602 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~~~~~li~~~~~-~~~~~A~~~~~~~~~~----~~~p~- 669 (783)
.+|+.+...|...|++++|...+++.++. ...|+. .++..+...+.. |++++|+..+++.++. +..+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777777777777777777777777621 011221 234444444443 6777777777765542 11111
Q ss_pred HHHHHHHHHHHHhcCChhhH-HHHHHHHhhc
Q 039931 670 VVTTNVLLSHFCKQGMPEKT-LLWGQKLSEI 699 (783)
Q Consensus 670 ~~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~ 699 (783)
..+|..+...|.+.|++++| ..+++++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45677777788888998888 7777777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00023 Score=71.60 Aligned_cols=98 Identities=4% Similarity=-0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC-HHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGR--MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD-IVRADEL 588 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~ 588 (783)
+++++.+++.+....++ +..+|+.-...+.+.|+ +++++.+++.+++.. +-|..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554333 45555554444444442 455555555555532 2244455544444445554 3555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 589 VNKMYAGGLDPDITTYNIRMHGYC 612 (783)
Q Consensus 589 ~~~m~~~g~~p~~~~~~~li~~~~ 612 (783)
++++++.. +-|...|+.....+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHH
Confidence 55555522 224444544444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-06 Score=81.03 Aligned_cols=161 Identities=7% Similarity=-0.065 Sum_probs=108.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL----G-PRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~ 189 (783)
...|++++|.+.++.+.. .......+++.+...+...|++++|...|++.+.. + ......++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888889885555543 22345667888888889999999999999888762 1 12334578888888999999
Q ss_pred hhhHHHHHHHHHhC----CCC--CCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC-CChHHHHHHHHHHH
Q 039931 190 IRIGESLLHVMHKY----MCV--ADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS-PNVVVYNALLNGYV 262 (783)
Q Consensus 190 ~~~A~~~~~~m~~~----g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~ 262 (783)
+++|...+++..+. +-. ....++..+...+...|++++|+..++++..+.... +.. .-..++..+...+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA---DDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHH
Confidence 99999988877653 211 123567778888888888888876555554443321 111 11234567777888
Q ss_pred hcCChhHHHHHHHHHHh
Q 039931 263 KARDIDQANMLYEEMRS 279 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~ 279 (783)
..|++++|.+.+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 88888888888877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-05 Score=72.10 Aligned_cols=92 Identities=7% Similarity=-0.043 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 039931 501 SLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580 (783)
Q Consensus 501 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 580 (783)
.+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++.++.. +.+...|..+...+...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 3333444444444444444444433211 33444444444444444444444444444321 123334444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 039931 581 DIVRADELVNKMYA 594 (783)
Q Consensus 581 ~~~~A~~~~~~m~~ 594 (783)
++++|.+.++++.+
T Consensus 96 ~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 96 KFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-05 Score=78.95 Aligned_cols=196 Identities=6% Similarity=-0.108 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC---------------
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNFTFNII-------INGFCKQGRMKPAIDAFMDMYRTGLVPD--------------- 565 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 565 (783)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+...++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 567888888888888876544 56667666 4556666666666666655544 2222
Q ss_pred -------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 039931 566 -------IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-- 636 (783)
Q Consensus 566 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 636 (783)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+..... |+.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCccc
Confidence 122345667778889999999999888763 465546666777888999999999999855432 322
Q ss_pred --HHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHH
Q 039931 637 --VTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPN--VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIM 711 (783)
Q Consensus 637 --~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 711 (783)
..+..+-.++.. |++++|+..+++....+..|. ...+.....++.+.|+.++|...++++...+|+ ...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 123333334443 889999999998876443354 235566667889999999999999999999975 5566555
Q ss_pred HH
Q 039931 712 DR 713 (783)
Q Consensus 712 ~~ 713 (783)
.+
T Consensus 248 ~~ 249 (282)
T 4f3v_A 248 KD 249 (282)
T ss_dssp HC
T ss_pred hC
Confidence 44
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-06 Score=73.76 Aligned_cols=102 Identities=9% Similarity=-0.028 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.+...+..+...+.+.|++++|...|++++..+ +.+...|..+...+...|++++|+..|++++...| .+...+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHH
Confidence 34556778889999999999999999999999887 56888999999999999999999999999999876 56778888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+..++...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=71.34 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039931 532 FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHG 610 (783)
Q Consensus 532 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~ 610 (783)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|...|++++|++.|++..+ +.| +...|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 344555555566666666666666665542 22455566666666666666666666666655 233 34555666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039931 611 YCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 611 ~~~~g~~~~A~~~~~~m~~ 629 (783)
|.+.|++++|...|++.++
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-05 Score=66.68 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 579 (783)
..+...+...|++++|.+.++++.+... .+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 3333333444444444444444333221 123333334444444444444444444443321 12233333444444444
Q ss_pred CCHHHHHHHHHHHH
Q 039931 580 LDIVRADELVNKMY 593 (783)
Q Consensus 580 g~~~~A~~~~~~m~ 593 (783)
|++++|...++++.
T Consensus 91 ~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 91 GDYDEAIEYYQKAL 104 (125)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7e-06 Score=84.44 Aligned_cols=125 Identities=6% Similarity=-0.079 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--------------ESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
+...+..+...|.+.|++++|+..|++.++...... ..+|..+...+.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999998863322 588999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHh
Q 039931 169 GPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL 229 (783)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (783)
.| .+..+|..+..++...|++++|+..|++..+.. +.+..++..+...+.+.|+.++|.
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76 688899999999999999999999999998875 456788899999999999888774
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00022 Score=71.64 Aligned_cols=95 Identities=6% Similarity=-0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 039931 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG--LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGK-LNEALKLE 519 (783)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~l~ 519 (783)
++++.+++.+....++ +..+|+.-...+.+.+ .+++++++++.+.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3444444444443333 4444444444444444 2445555555544432 2233444444444444444 34455555
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q 039931 520 REMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 520 ~~m~~~~~~p~~~~~~~li~~ 540 (783)
+++++..+. |...|+.....
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHH
Confidence 554444333 44444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.7e-06 Score=75.22 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHHcCCH--HH
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGG-YCKALDI--VR 584 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~ 584 (783)
..|++++|...+++..+.... +...+..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456667777777776665432 56677777777777777777777777777642 2355666666666 6677777 77
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 585 ADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 585 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
|...++++.+. .| +...+..+...|...|++++|...|++.++.
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88777777763 34 4566777777788888888888888877763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=6.2e-06 Score=72.70 Aligned_cols=101 Identities=10% Similarity=-0.084 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
|.+...+..+...+.+.|++++|...|++++..+ +.+...|..+...+.+.|++++|+..|++.+..+| .+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 4455677888899999999999999999999887 56788899999999999999999999999999876 567788889
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
..++...|++++|...|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-05 Score=68.08 Aligned_cols=98 Identities=6% Similarity=-0.097 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+.+.|++++|+..|++.++.+ +.+...|..+...+.+.|++++|+..|++.++..| .+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 4568888899999999999999999999886 56788999999999999999999999999999876 578889999999
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 039931 184 FCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~ 203 (783)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998865
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-05 Score=65.51 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+..+ .+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4578888999999999999999999998876 45788899999999999999999999999999865 578889999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+...|++++|...+++..+.. +.+...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 999999999999999998765 3344444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=76.13 Aligned_cols=156 Identities=11% Similarity=-0.091 Sum_probs=81.8
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCh
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK----GLL-PDNFTFNIIINGFCKQGRM 547 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~ 547 (783)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123345555555555666666666666555441 111 1234555566666667777
Q ss_pred HHHHHHHHHHHHc----CCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCC
Q 039931 548 KPAIDAFMDMYRT----GLVP--DIVTYNTLIGGYCKALDIVRADELVNKMYAGG--L-DPD--ITTYNIRMHGYCNIRK 616 (783)
Q Consensus 548 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~g~ 616 (783)
++|...+++..+. +-.| ...++..+...+...|++++|...+++..+.. . .+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7776666665532 1011 12345666666667777777777776665310 0 111 2335666677777777
Q ss_pred HHHHHHHHHHHHH
Q 039931 617 MNQAAMMLDELVS 629 (783)
Q Consensus 617 ~~~A~~~~~~m~~ 629 (783)
+++|.+.+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.8e-06 Score=80.68 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=32.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHh
Q 039931 116 RVEMSAEVMEILYRMREVGIMPSESAITIL-------FKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~l~~~g~~~~A~~~~~~~~~ 167 (783)
..++...|.+.|.++.+.+ +.....|+.+ ...+.+.++..+++..+...+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~ 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777777777765 4556667666 4555555555555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-05 Score=67.11 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYC 577 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 577 (783)
.+..+...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444444555555555555554443221 34444445555555555555555555554431 123444455555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 039931 578 KALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRK 616 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 616 (783)
..|++++|.+.+++..+. .| +...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555555442 22 33444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=74.10 Aligned_cols=117 Identities=6% Similarity=-0.014 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 039931 440 GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-FCNRGKL--NEAL 516 (783)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~A~ 516 (783)
|++++|...++...+..+. +...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4444444444444333221 33444444444444444444444444444321 1233344444444 3444444 5555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 517 KLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 517 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
..+++..+..+. +...+..+...|...|++++|...|+++.+
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554443222 344444444555555555555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-05 Score=68.01 Aligned_cols=107 Identities=6% Similarity=-0.037 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--C----HHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--S----NYTFN 178 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~ 178 (783)
..+..|...|.+.|++++|+..|+++++.+ +.+...|+.+..+|.+.|++++|++.|++.++..+.. + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 467889999999999999999999999987 5678889999999999999999999999998764321 1 24678
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
.++.++...|++++|++.|++.++. .||..+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 8889999999999999999998874 466554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.1e-06 Score=75.22 Aligned_cols=110 Identities=12% Similarity=-0.018 Sum_probs=91.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 125 EILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 125 ~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
..|++++..+ +.+...+..+...+.+.|++++|+..|++.+...| .+...|..+..++...|++++|...|++..+..
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456666554 34566788899999999999999999999999876 688899999999999999999999999998875
Q ss_pred CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 205 CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
+.+...+..+..+|...|++++|+ ..|+...+
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~-------~~~~~al~ 117 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAE-------SGLFLAQE 117 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHH-------HHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHH-------HHHHHHHH
Confidence 456788899999999999999995 45555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=67.12 Aligned_cols=102 Identities=8% Similarity=-0.090 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFN 178 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ 178 (783)
|.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|+..|++.++..+ . +...+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHH
Confidence 3445678888999999999999999999998876 46778899999999999999999999999999865 4 678899
Q ss_pred HHHHHHHhc-CChhhHHHHHHHHHhCC
Q 039931 179 ALILGFCRN-GCIRIGESLLHVMHKYM 204 (783)
Q Consensus 179 ~l~~~~~~~-g~~~~A~~~~~~m~~~g 204 (783)
.+...+... |++++|.+.+++..+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999999 99999999999998764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=67.04 Aligned_cols=116 Identities=12% Similarity=-0.041 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 540 (783)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3444555555555555555555555554432 223445555555555555555555555555544222 44555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcC
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKAL 580 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 580 (783)
+.+.|++++|.+.|++..+. .| +...+..+...+...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 55666666666666655543 23 2344444444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-05 Score=79.94 Aligned_cols=128 Identities=10% Similarity=-0.046 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPD--------------NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
.+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444444445555555555554444322211 4566667777777777777777777777642 2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 039931 564 PDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQA-AMMLDELV 628 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 628 (783)
.+...|..+..+|...|++++|+..|++.++. .| +...+..+..++.+.|+.++| ..+++.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777763 34 456666777777777777766 33555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.5e-05 Score=70.67 Aligned_cols=101 Identities=5% Similarity=-0.079 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
.+...+..+...|.+.|++++|+..|++.++.. +.+...|..+...+.+.|++++|+..|++.++..+ .+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345678899999999999999999999999886 56788999999999999999999999999999876 5788999999
Q ss_pred HHHHhcCChhhHHHHHHHHHhCC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999998753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=68.47 Aligned_cols=113 Identities=10% Similarity=0.015 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CC----HHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR--PS----NYTF 177 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 177 (783)
...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++++...+. ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4578889999999999999999999998876 567888999999999999999999999999887542 22 7788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
..+...+...|++++|...|++..+.. |+......+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 899999999999999999999998764 5665555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-05 Score=66.71 Aligned_cols=101 Identities=10% Similarity=-0.144 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
+.++..+..+...+...|++++|...|.+.++.+ +.+...|..+...+...|++++|...|++.++..+ .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 4567788899999999999999999999988876 45678888999999999999999999999998875 577788889
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-05 Score=66.77 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG--LDPD----ITTYNIR 607 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 607 (783)
+..+...+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444445555555555555444431 1134444444455555555555555554444310 0011 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..++...|++++|++.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-05 Score=71.37 Aligned_cols=122 Identities=8% Similarity=-0.073 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS---------------ESAITILFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
..+..+...+.+.|++++|+..|++.++...... ...+..+...+.+.|++++|+..|++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4678888999999999999999999998652221 2788889999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
+ .+...+..+..++...|++++|...|++..+.. +.+..++..+...+...++.+++
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5 678889999999999999999999999998764 45667788887777776666555
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.6e-05 Score=66.13 Aligned_cols=111 Identities=8% Similarity=-0.063 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS----ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT 176 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 176 (783)
+.+...+..+...+.+.|++++|...|++.++.. |+ ...+..+...+...|++++|+..|++.++..+ .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 4567889999999999999999999999999875 44 67888999999999999999999999998865 56888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+..+..++...|++++|...|++..+.. +.+...+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 8999999999999999999999998764 2344444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-05 Score=66.41 Aligned_cols=95 Identities=13% Similarity=-0.063 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
+..+...+.+.|++++|+..|+++++.. +.+...|..+...+.+.|++++|+..|++.++..| .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 5567788899999999999999999886 56888999999999999999999999999999876 577789999999999
Q ss_pred cCChhhHHHHHHHHHhC
Q 039931 187 NGCIRIGESLLHVMHKY 203 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~ 203 (783)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.5e-05 Score=63.91 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGY 611 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 611 (783)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.++. .| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 34444445555555555555555555432 223455555555555555555555555555542 23 344555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 039931 612 CNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 612 ~~~g~~~~A~~~~~~m~~ 629 (783)
...|++++|...|++.++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.6e-06 Score=77.84 Aligned_cols=149 Identities=11% Similarity=-0.060 Sum_probs=76.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---------------HHHH
Q 039931 113 GYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS---------------NYTF 177 (783)
Q Consensus 113 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~ 177 (783)
.....|.+++|.+.++.-.... ......+..+...+.+.|++++|+..|++.++..+... ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3334455555555554221110 11234566777788888888888888888887644322 2456
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNAL 257 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 257 (783)
..+..++...|++++|+..+++..+.. +.+...+..+..+|...|++++|+ ..|++..+... .+..++..+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~-------~~~~~al~~~p-~~~~~~~~l 162 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAK-------ENLYKAASLNP-NNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH-------HHHHHHHHHST-TCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHH-------HHHHHHHHHCC-CcHHHHHHH
Confidence 666666666666666666666665543 334555555555565666665552 33333333211 134445555
Q ss_pred HHHHHhcCChhHHH
Q 039931 258 LNGYVKARDIDQAN 271 (783)
Q Consensus 258 i~~~~~~g~~~~A~ 271 (783)
...+.+.++.+++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00016 Score=60.41 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN 613 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 613 (783)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 1233444444444444444444444444444421 1133444444444445
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 614 IRKMNQAAMMLDELVS 629 (783)
Q Consensus 614 ~g~~~~A~~~~~~m~~ 629 (783)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555544443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00017 Score=62.48 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+.+...+..+...+...|++++|+..|.+.+...+ .+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45678899999999999999999999999999876 578899999999999999999999999998875 4568899999
Q ss_pred HHHHHhcCCcchHhhhccch
Q 039931 216 INAYCIRGQTSYALGKCGAG 235 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a 235 (783)
...|...|++++|+..++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 99999999999996544333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.99 E-value=5.6e-05 Score=64.81 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG--LDPD----ITTYNIR 607 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 607 (783)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. ..++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444444321 1233344444444444444444444444444311 0011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..++...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444555555555555544444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00023 Score=62.60 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHH
Q 039931 600 DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN----TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTT 673 (783)
Q Consensus 600 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~ 673 (783)
+...+..+...+...|++++|...|++.++. .|+ ...|..+...+.. +++++|+..+++.++. .| +...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4455666666666666666666666666642 344 2333333333332 6677777777776663 34 44667
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 674 NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 674 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
..+...|...|++++|..++++++++.|. +..++..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 77777888899999999999999998876 66666665554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.97 E-value=6.6e-05 Score=65.96 Aligned_cols=93 Identities=9% Similarity=-0.147 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYC 612 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~ 612 (783)
+..+...+.+.|++++|...|++.+... +.+...|..+..+|...|++++|+..+++..+. .| +...+..+..+|.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 3334444555555555555555555432 124444555555555555555555555555542 22 3344555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 039931 613 NIRKMNQAAMMLDELVS 629 (783)
Q Consensus 613 ~~g~~~~A~~~~~~m~~ 629 (783)
..|++++|...|++.++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0037 Score=66.47 Aligned_cols=121 Identities=10% Similarity=0.019 Sum_probs=68.4
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CC-ChhHHHHHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQ----KGLLPD-NFTFNIIINGFCKQGRMKPAIDAFMDMYRT--GL--VP-DIVTYNTLIGGYC 577 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p-~~~~~~~li~~~~ 577 (783)
..|+++.|..+++.... .+..+. ..++..+...|...|++++|..++++.... +. .| ...++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 44566666666555432 122222 345556666677777777777776665532 11 11 1345666677777
Q ss_pred HcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 578 KALDIVRADELVNKMYAG--GLD-P-D--ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
..|++++|..++++.... .+. | . ...+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777665541 111 1 1 2345555666667777777777766664
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.6e-05 Score=67.61 Aligned_cols=48 Identities=8% Similarity=-0.109 Sum_probs=35.1
Q ss_pred CCCCH-HHH----HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 666 FVPNV-VTT----NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 666 ~~p~~-~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
+.|+. ..| .....++...|++++|+..+++++++.|+ |...+.-+..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~-d~~~~~~~~~~ 145 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE-RKGETPGKERM 145 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-CCSCCTTHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 36755 567 77778888889999999999988888876 66555444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00024 Score=60.84 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSE---SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS--NYTFNALI 181 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 181 (783)
+-.+...+.+.|++++|...|+++.+... .+. ..+..+...+.+.|++++|+..|+++++..|... ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 44567788999999999999999988752 333 5788899999999999999999999999865322 66788899
Q ss_pred HHHHhcCChhhHHHHHHHHHhCC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
.++...|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.91 E-value=8.4e-05 Score=79.90 Aligned_cols=124 Identities=6% Similarity=-0.118 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--------------ESAITILFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
...+..+...|.+.|++++|...|+++++...... ...|+.+..++.+.|++++|+..|+++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45788899999999999999999999988753222 5889999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHh
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL 229 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (783)
+ .+..+|..+..+|...|++++|+..|++.++.. +.+..++..+...+.+.++.++|.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6 678899999999999999999999999999875 456678888888888888887774
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00018 Score=64.84 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGY 611 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 611 (783)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++. .| +...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33334444444444444444444444321 113344444444444444444444444444442 22 234444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 039931 612 CNIRKMNQAAMMLDELV 628 (783)
Q Consensus 612 ~~~g~~~~A~~~~~~m~ 628 (783)
...|++++|...|++.+
T Consensus 90 ~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 44444444444444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.6e-05 Score=61.53 Aligned_cols=101 Identities=11% Similarity=0.014 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHhHHH
Q 039931 137 PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVA--DFFAYNI 214 (783)
Q Consensus 137 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ 214 (783)
.+...+..+...+.+.|++++|...|+++++..+ .+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 3456778888999999999999999999999865 577889999999999999999999999999875 34 6888999
Q ss_pred HHHHHHhc-CCcchHhhhccchHHHHHHHHHCC
Q 039931 215 LINAYCIR-GQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 215 li~~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
+...+.+. |++++| .+.+.......
T Consensus 82 l~~~~~~~~~~~~~A-------~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEA-------EIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHH-------HHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHH-------HHHHHHHhhcc
Confidence 99999999 999999 56777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.002 Score=68.57 Aligned_cols=166 Identities=10% Similarity=-0.063 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCCC-HHH
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRRK-IFPDA----VAFSAYINGLSKAGLVDEAYGVFLEMSR----IGFVPN-NFA 498 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~ 498 (783)
+..++..|...|++++|.+.+..+...- ..++. ...+.+-..+...|+.++|..++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455666666666666666666554321 01111 1122223333455677777777766543 222222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hh
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQK--GL--LP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRT----GLVPD--IV 567 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~--~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~ 567 (783)
+..+...+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++.... +.+|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777888888888877776542 11 11 2456777777888888888888888776532 11111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+..+...+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777888888877766654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.7e-05 Score=68.66 Aligned_cols=99 Identities=7% Similarity=-0.040 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREV--------GI---------MPSESAITILFKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~---------~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 167 (783)
..+......+.+.|++++|+..|.+.++. .. +.+...|..+..++.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 46788889999999999999999998876 10 22346788899999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 168 LGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
..| .+...|..+..++...|++++|...|++..+..
T Consensus 92 ~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 REE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 876 678899999999999999999999999998864
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=80.26 Aligned_cols=151 Identities=11% Similarity=-0.122 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 566 IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG 645 (783)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 645 (783)
...+..+...+.+.|++++|+..|++.++ +.|+... +...|+.+++...+. ...|..+...
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34455666666677777777777777665 2344331 122333333332221 0134444433
Q ss_pred Hhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHH
Q 039931 646 VCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAE 723 (783)
Q Consensus 646 ~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~ 723 (783)
+.. +++++|+..++++++. .| +...|..+..+|...|++++|+..+++++++.|. +..++..|........+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 433 7888888888888873 45 4577888888899999999999999999998886 77777777776544456666
Q ss_pred HHHHHHhcCCCcchh
Q 039931 724 FFQETSEKSLFLDFL 738 (783)
Q Consensus 724 ~~~~~~~~~~~~~~~ 738 (783)
.++.++++++..+|.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 777777777776653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=4.2e-05 Score=82.64 Aligned_cols=120 Identities=12% Similarity=-0.020 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039931 108 DALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRN 187 (783)
Q Consensus 108 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (783)
..+...|.+.|++++|.+.|+++++.. +.+..+|..+...+.+.|++++|++.|++.++..+ .+..++..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 334456678899999999999998876 45688899999999999999999999999999865 6778899999999999
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCcchHhh
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINA--YCIRGQTSYALG 230 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~ 230 (783)
|++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|+.
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988764 2344455555555 777888888854
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00018 Score=77.22 Aligned_cols=79 Identities=10% Similarity=-0.096 Sum_probs=56.6
Q ss_pred HHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 039931 638 TYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAY 715 (783)
Q Consensus 638 ~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y 715 (783)
.|..+...+.. +++++|+..++++++. .| +...|..+..+|.+.|++++|+..++++++++|. +..++..++.++
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34344333333 6777777777777763 34 4577888888999999999999999999999987 778898998887
Q ss_pred hhhh
Q 039931 716 HNIQ 719 (783)
Q Consensus 716 ~~~~ 719 (783)
...+
T Consensus 396 ~~~~ 399 (457)
T 1kt0_A 396 KKAK 399 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.1e-05 Score=67.90 Aligned_cols=109 Identities=8% Similarity=-0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C-C-------CCCH-HHHHHHHHHHhh-ccHHHHHHHHHHHHHc
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSA--------G-I-------VPNT-VTYNTLMNGVCC-DILDRAIIIAAKLLKM 664 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g-~-------~p~~-~~~~~li~~~~~-~~~~~A~~~~~~~~~~ 664 (783)
.+......+.+.|++++|+..|.+.++. . . .|.. ..|..+...+.. |++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445555566666666666666555542 0 0 1222 233333333333 7788888888887773
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q 039931 665 AFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDE-TSYKIMDRA 714 (783)
Q Consensus 665 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~-~~~~~l~~~ 714 (783)
.| +...|..+..+|...|++++|+..++++++++|+ +. .....+..+
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~ 141 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIV 141 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 45 4467778888888999999999999999988876 55 444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=64.98 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=69.4
Q ss_pred hcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhH
Q 039931 116 RVEMSAEVMEILYRMREVG--IMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIG 193 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 193 (783)
..|++++|+..|+++++.+ -+.+..++..+...+.+.|++++|+..|+++++..| .+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3578889999999998874 233456788899999999999999999999998876 5677888899999999999999
Q ss_pred HHHHHHHHhC
Q 039931 194 ESLLHVMHKY 203 (783)
Q Consensus 194 ~~~~~~m~~~ 203 (783)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=61.51 Aligned_cols=91 Identities=18% Similarity=0.002 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 039931 536 IIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNI 614 (783)
Q Consensus 536 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 614 (783)
.+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..+++.++ +.| +...+..+..+|...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 33444555555555555555555431 12445555555555555555555555555554 233 344555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 039931 615 RKMNQAAMMLDELVS 629 (783)
Q Consensus 615 g~~~~A~~~~~~m~~ 629 (783)
|++++|+..+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=65.86 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLL-PD----NFTFNIIINGFCKQGRMKPAIDAFMDMYRT----GLVP-DIVT 568 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 568 (783)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +-.+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544332000 01 134555556666666666666666665432 1000 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAG----GLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++.++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666666667777776666665541 1111 123455666667777777777777766553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.9e-05 Score=67.48 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIM-PS----ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR-PSNYTFN 178 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 178 (783)
.++..+...|...|++++|+..+++.++.... ++ ..++..+...+...|++++|...|++.++.... ++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 45666666777777777777777666543110 11 023444555555555555555555554432110 000
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC-CChHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS-PNVVVYNAL 257 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l 257 (783)
.....++..+...+...|++++|+..++++..+.... +.. ....++..+
T Consensus 86 ---------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l 135 (164)
T 3ro3_A 86 ---------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSL 135 (164)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---cchHhHHHHHHHH
Confidence 0002234444444555555555543333333332221 100 113456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 039931 258 LNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~m~~ 279 (783)
...+...|++++|.+.+++..+
T Consensus 136 a~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 136 GNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 7777777888888777777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0011 Score=72.94 Aligned_cols=165 Identities=7% Similarity=-0.062 Sum_probs=116.3
Q ss_pred ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 546 RMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALD----------IVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 546 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
..++|++.++++++. .| +..+|+.--..+...|+ ++++++.++++.+.. +-+..+|+.-..++.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345667777777774 34 45566665555655666 788888888888732 23667788888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh-c-cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc-----
Q 039931 615 R--KMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVCC-D-ILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQ----- 683 (783)
Q Consensus 615 g--~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~-~-~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~----- 683 (783)
| +++++++.++++++. .|. ...|+.-...+.. + ..+++++.+.++++. .| |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhccccc
Confidence 8 668888888888873 333 3444433322222 4 678888888888773 35 557787776666653
Q ss_pred ---------CChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q 039931 684 ---------GMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI 718 (783)
Q Consensus 684 ---------g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~ 718 (783)
+.+++|+++++++++++|+ |..+|..+.+.+.+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRA 239 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcC
Confidence 5679999999999999998 999999999988653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00034 Score=61.47 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CHH-----HHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMP------SES-----AITILFKSLLRVGDYGSVWKLFRDMIHL----- 168 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~------~~~-----~~~~ll~~l~~~g~~~~A~~~~~~~~~~----- 168 (783)
..+..+...+.+.|++++|+..|++.++..... +.. .|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 356677778888999999999999988875321 222 7888888888999999999988888886
Q ss_pred --CCCCCHHHH----HHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 169 --GPRPSNYTF----NALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 169 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.| .+...| .....++...|++++|+..|++.++.
T Consensus 92 e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55 455577 88888888888888888888887653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00012 Score=76.18 Aligned_cols=121 Identities=7% Similarity=0.001 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----------------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMRE----------------VGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
..+..+...|.+.|++++|+..|+++++ .. +.+..+|+.+...+.+.|++++|+..++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4578889999999999999999999886 22 234567888999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 169 GPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
.+ .+...+..+..++...|++++|+..|++..+.. +.+...+..+...+.+.++.+++
T Consensus 303 ~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 75 578899999999999999999999999998864 34667777777777776666655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0009 Score=57.08 Aligned_cols=100 Identities=10% Similarity=-0.100 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHh-hccHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 039931 607 RMHGYCNIRKMNQAAMMLDELVSAG-IVPNT-VTYNTLMNGVC-CDILDRAIIIAAKLLKMAFVPN----VVTTNVLLSH 679 (783)
Q Consensus 607 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-~~~~~li~~~~-~~~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~ 679 (783)
+...+...|++++|...|++.++.. -.|.. ..+..+...+. .|++++|...++++++. .|+ ...+..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 3445555666666666666655421 11110 12222222222 25666666666666552 233 3456667777
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCCHHHHH
Q 039931 680 FCKQGMPEKTLLWGQKLSEISFDFDETSYK 709 (783)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~ 709 (783)
+.+.|++++|+..++++.+..|+ +..+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPG-SDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-SHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-ChHHHH
Confidence 88899999999999999888876 554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00024 Score=73.79 Aligned_cols=77 Identities=12% Similarity=-0.044 Sum_probs=57.8
Q ss_pred HHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 039931 638 TYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAY 715 (783)
Q Consensus 638 ~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y 715 (783)
.|..+...+.. +++++|+..++++++ +.| +...|..+..+|...|++++|+..+++++++.|. +..++..+..++
T Consensus 275 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 275 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444444433 778888888888877 445 4467778888899999999999999999999987 777888877776
Q ss_pred hh
Q 039931 716 HN 717 (783)
Q Consensus 716 ~~ 717 (783)
..
T Consensus 352 ~~ 353 (370)
T 1ihg_A 352 QK 353 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=78.36 Aligned_cols=133 Identities=13% Similarity=-0.011 Sum_probs=104.8
Q ss_pred HHHhcCChhHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCC-HHhHH
Q 039931 148 SLLRVGDYGSVWKLFRDMIHL-----GPR-PS-NYTFNALILGFCRNGCIRIGESLLHVMHKY-----MC-VAD-FFAYN 213 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~-~~~~~ 213 (783)
.+..+|++++|..++++.++. |+. |+ ..+++.|..+|...|++++|..++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999998764 321 22 347999999999999999999999987642 31 233 46789
Q ss_pred HHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 214 ILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
.|...|...|++++|+..+++|..+++.......+....+.+.+-..+...+.+++|..+|.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888766444333455666778888889999999999998763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0004 Score=74.96 Aligned_cols=117 Identities=12% Similarity=-0.001 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
+.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666666665332 46666666666667777777777776666653 22455666666666667777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHH
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDG--YFRIGDLIGAQSLWN 450 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 450 (783)
.+.+++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777666665322 33344444444 566666666666665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=8.6e-05 Score=65.07 Aligned_cols=88 Identities=8% Similarity=-0.043 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh----------hhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 649 DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMP----------EKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
+.+++|++.+++.++ +.| +...|..+..++...|++ ++|+..++++++++|+ +..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 456777777777766 334 445666666666666553 4888888888888876 77778888888765
Q ss_pred hh----------HHHHHHHHHHhcCCCcchhh
Q 039931 718 IQ----------ENAEFFQETSEKSLFLDFLM 739 (783)
Q Consensus 718 ~~----------~~~~~~~~~~~~~~~~~~~~ 739 (783)
.+ ++++.+.+.++++++++|..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 43 57777777778877777754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00011 Score=61.81 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=50.2
Q ss_pred cCChHHHHHHHHHHHHcCC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 039931 544 QGRMKPAIDAFMDMYRTGL-VP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQA 620 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 620 (783)
.|++++|+..|++.++.+. .| +...+..+...|...|++++|++.+++.++. .| +...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4566666666666665321 12 3455666666666777777777777776663 33 456666666777777777777
Q ss_pred HHHHHHHHH
Q 039931 621 AMMLDELVS 629 (783)
Q Consensus 621 ~~~~~~m~~ 629 (783)
...+++.++
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.003 Score=69.43 Aligned_cols=170 Identities=6% Similarity=-0.068 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-
Q 039931 407 LPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGD----------LIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG- 475 (783)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 475 (783)
.++|++.+++++...+. +..+|+.--..+...|+ ++++++.++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566777776666443 45555555555555555 66777777777666554 6666666666666666
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 039931 476 -LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRG-KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ--------- 544 (783)
Q Consensus 476 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~--------- 544 (783)
+++++++.++++.+.. +-|...|+.-...+.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5577777777776653 335556666666666666 667777777777666544 666666665555542
Q ss_pred -----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 039931 545 -----GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD 581 (783)
Q Consensus 545 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 581 (783)
+.++++++.+++++... +-|...|..+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666532 2245556655555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00052 Score=56.71 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC------HHhHH
Q 039931 140 SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVAD------FFAYN 213 (783)
Q Consensus 140 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~ 213 (783)
..+..+...+.+.|++++|++.|++.++..| .+...+..+..++...|++++|+..+++..+.. +.+ ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 3444555555555555555555555555443 344555555555555555555555555555442 111 33344
Q ss_pred HHHHHHHhcCCcchH
Q 039931 214 ILINAYCIRGQTSYA 228 (783)
Q Consensus 214 ~li~~~~~~g~~~~A 228 (783)
.+..++...|+.+.|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 444444455555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00081 Score=53.08 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...|.+.|++++|...|++.++.. +.+..++..+...+.+.|++++|+..|++.++..| .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3456667777777777777777777776654 34566667777777777777777777777776654 345555555555
Q ss_pred HHh
Q 039931 184 FCR 186 (783)
Q Consensus 184 ~~~ 186 (783)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00026 Score=62.03 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=81.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDY----------GSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
.+.+++++|++.+++..+.+ +.+...|+.+..++...+++ ++|+..|++.++..| .+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 45567899999999999887 67888999899999888775 499999999999876 5777899999999
Q ss_pred HhcC-----------ChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 185 CRNG-----------CIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 185 ~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
...| ++++|+..|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8875 899999999999886 477666554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00062 Score=56.25 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C----HHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP-S----NYTF 177 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~ 177 (783)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++.++..|.. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34678889999999999999999999999886 5678889999999999999999999999999876532 1 5566
Q ss_pred HHHHHHHHhcCChhhHHHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHV 199 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~ 199 (783)
..+..++...|+.+.|...+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 6677777777777776655543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00038 Score=71.41 Aligned_cols=130 Identities=8% Similarity=-0.067 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSES------------------AITILFKSLLRVGDYGSVWKLFRDM 165 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~------------------~~~~ll~~l~~~g~~~~A~~~~~~~ 165 (783)
...+..+...+.+.|++++|...|+++++.. |+.. .|+.+...+.+.|++++|+..|++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3467888889999999999999999988764 4432 7888999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCCcchHhhhccchHHHHHHHHH
Q 039931 166 IHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC-IRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
++..+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..... ..+..+++ +..+..|..
T Consensus 257 l~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a-------~~~~~~~l~ 327 (338)
T 2if4_A 257 LTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ-------KEMYKGIFK 327 (338)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhC
Confidence 99865 678899999999999999999999999998654 234445555544422 22333333 455665544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00048 Score=73.87 Aligned_cols=131 Identities=5% Similarity=-0.159 Sum_probs=91.5
Q ss_pred HHHhcCChhhHHHHHHHHHhC-----CC-CCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKY-----MC-VAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYN 255 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~-----g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~ 255 (783)
.+...|++++|..++++.++. |. .|+ ..+++.|..+|...|++++|+..++++..+.+.......+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999987653 21 122 45899999999999999999988888888888776544433457799
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCH-hHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSR-----DIA-PDA-VTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
.|...|...|++++|..++++..+. |.. |++ .+.+.+-.++...+.+++|+.++..+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987652 321 121 123333334444455555555555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0011 Score=55.45 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 039931 122 EVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMH 201 (783)
Q Consensus 122 ~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 201 (783)
+|+..|+++++.+ +.+...+..+...+.+.|++++|+..|++.++..+ .+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666655 44566677777777777777777777777777654 455667777777777777777777777665
Q ss_pred h
Q 039931 202 K 202 (783)
Q Consensus 202 ~ 202 (783)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0013 Score=54.93 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=65.7
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 94 CDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
.......|.++..+..+..+|.+.|++++|+..|++.++.+ +.+...|..+...+...|++++|...|++.++..+
T Consensus 9 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 9 EAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33344457788999999999999999999999999999886 56678899999999999999999999999987543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0064 Score=52.64 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=36.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 039931 362 IIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK----KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYF 437 (783)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 437 (783)
|...|...+.+++|+++|++..+.| +...+..+...|.. .+++++|.+.|++..+.| ++..+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333344444444444444432 33333444444443 344444444444444432 2333444444444
Q ss_pred h----cCCHHHHHHHHHHHHhC
Q 039931 438 R----IGDLIGAQSLWNELNRR 455 (783)
Q Consensus 438 ~----~g~~~~A~~~~~~~~~~ 455 (783)
. .+++++|.+.|++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 34444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0082 Score=51.96 Aligned_cols=108 Identities=11% Similarity=-0.054 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADE 587 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 587 (783)
+++|.+.|++..+.|. |+.. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4444444444444431 1211 3333334444444555555544432 33444444444444 445555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 039931 588 LVNKMYAGGLDPDITTYNIRMHGYCN----IRKMNQAAMMLDELVSA 630 (783)
Q Consensus 588 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 630 (783)
+|++..+. -+...+..|...|.. .++.++|...|++..+.
T Consensus 83 ~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555442 233444444444444 44555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0025 Score=50.12 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
+...+..+...+...|++++|+..|++.++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788889999999999999999999998865 577889999999999999999999999998764 345667776666
Q ss_pred HHHhc
Q 039931 218 AYCIR 222 (783)
Q Consensus 218 ~~~~~ 222 (783)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=53.49 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
|.++.++..+..+|.+.|++++|+..|+++++.+ +.+..+|..+...|.+.|++++|++.|++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777777777777777777777765 345567777777777777777777777777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0032 Score=50.91 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+.+...+..+...+.+.|++++|+..|+++++..| .+...|..+..++...|++++|...+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999876 46678999999999999999999999988753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0071 Score=48.53 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSES-AITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
....+.+.|++++|...|+++++.+ +.+.. .+..+...+...|++++|+..|++.++..|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456667777777777777777765 34556 777777777777777777777777777665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.015 Score=46.52 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPN-VV-TTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQ 726 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~ 726 (783)
+++++|+..++++++. .|+ .. .|..+...|...|++++|++.++++++++|+ +..++.. ..+..+.
T Consensus 14 ~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~---------~~~~~a~ 81 (99)
T 2kc7_A 14 GDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR---------KMVMDIL 81 (99)
T ss_dssp TCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH---------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH---------HHHHHHH
Confidence 7888899999888873 454 46 7888888899999999999999999999987 5555411 3444455
Q ss_pred HHHhcCCCcch
Q 039931 727 ETSEKSLFLDF 737 (783)
Q Consensus 727 ~~~~~~~~~~~ 737 (783)
..++++...+|
T Consensus 82 ~~~~~~~~~~p 92 (99)
T 2kc7_A 82 NFYNKDMYNQL 92 (99)
T ss_dssp HHHCCTTHHHH
T ss_pred HHHHHHhccCc
Confidence 55666665554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.037 Score=55.72 Aligned_cols=75 Identities=11% Similarity=-0.097 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 563 VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNT 641 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 641 (783)
+.+..+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|.+.|++... +.|...||..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 345667777666666667788888777777774 36766676777777777888888777777765 3566555533
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.01 Score=62.45 Aligned_cols=94 Identities=4% Similarity=-0.161 Sum_probs=74.6
Q ss_pred hcCChhhHHHHHHHHHhC---CCCCC----HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 186 RNGCIRIGESLLHVMHKY---MCVAD----FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++..++++......+-...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887652 12222 36789999999999999999988888888888776544333346799999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 039931 259 NGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~ 279 (783)
..|...|++++|..+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.03 Score=44.32 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 101 GSDFRVLDALLHGYLRVEM---SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
|.++.++..+..++...+. .++|...|++.++.+ +.++.+...+...+.+.|++++|+..|+++++..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556666666666654433 567777777777665 45666666667777777777777777777766554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.15 E-value=2.6 Score=48.05 Aligned_cols=264 Identities=13% Similarity=0.050 Sum_probs=123.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKG--ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGL-------TPSSCTCSSLLVG 400 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 400 (783)
+....|+.++++.+++..+..+ -.+.+..-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556677777777666655421 112223333344445555555566666655544210 0111112223333
Q ss_pred HHhcCC-hhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 401 LCKKGR-LPEAWDLLCKMIEKGFPINK--VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 401 ~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
+.-.|. -+++.+.+..++...-. .. ..--++...+.-.|+-+....+++.+.+.. .-++.-...+.-++.-.|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 23445555555443211 11 111223333445566666666666655531 11122222233334456777
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNF-AYN---SLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~-~~~---~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
+.+..+.+.+... .+.. -|. ++.-+|+..|+.....++++.+.... ..++.....+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777776666653 2222 222 23334556677666666777766542 22333333333344445666666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHH
Q 039931 554 FMDMYRTGLVPDIVTYNTLIGGYCKALDI-VRADELVNKMYAGGLDPDITT 603 (783)
Q Consensus 554 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~ 603 (783)
++.+.+.+ .|.+..-.++.-+....|.. .++.+++..+.. .+|..+
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 66555543 34444333444444444443 566777777764 455443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.016 Score=60.94 Aligned_cols=99 Identities=8% Similarity=-0.182 Sum_probs=78.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYM---CVAD----FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVV 253 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~ 253 (783)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.|..+|...|++++|+..++++..+++.......+-...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455668899999999999987542 2222 457899999999999999999888888888887765443333467
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.02 Score=60.22 Aligned_cols=100 Identities=7% Similarity=-0.115 Sum_probs=78.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc-----CCC-C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HH
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHL-----GPR-P-SNYTFNALILGFCRNGCIRIGESLLHVMHKY-----M-CVAD-FF 210 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~ 210 (783)
.+..+.++|++++|+..+++.++. |+. | -..+++.++.+|...|++++|..++++.+.. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345567889999999999999864 221 1 2347899999999999999999999987642 3 1233 35
Q ss_pred hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 211 AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
+++.|...|...|++++|+..+++|.++++....
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999988888888887755
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.01 Score=57.20 Aligned_cols=87 Identities=18% Similarity=0.144 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHH
Q 039931 650 ILDRAIIIAAKLLKMAFVPN---VVTTNVLLSHFCK-----QGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQEN 721 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~ 721 (783)
...+|...++++++ +.|+ -..|..+...|.+ -|+.++|.++++++++++|+.+..++..+++.|+..+++
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45677777888887 5677 3567777777777 389999999999999998864477787888888775677
Q ss_pred HHHHHHHHhcCCCcchh
Q 039931 722 AEFFQETSEKSLFLDFL 738 (783)
Q Consensus 722 ~~~~~~~~~~~~~~~~~ 738 (783)
.+.+++++++++..++-
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888877664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.1 Score=52.55 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTY 604 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 604 (783)
++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 44555555444444555555555555555542 5555555555555555666666655555554 34554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.3 Score=56.44 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=67.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 465 SAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
..++..+.+.|..++|+++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555666666666665442110 0122234556666666654322 2556666777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMML 624 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 624 (783)
|+++.|.+.|.++.. |..+...|...|+.+...++.+.....|- ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777776665532 23344444445555555555444444321 233334455556666665555
Q ss_pred HH
Q 039931 625 DE 626 (783)
Q Consensus 625 ~~ 626 (783)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0073 Score=63.51 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=56.4
Q ss_pred cCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCC-HhHHHHHHH
Q 039931 222 RGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR-----DI-APD-AVTFNIIVS 294 (783)
Q Consensus 222 ~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~ll~ 294 (783)
.|++++|+..++++..+.+............+++.|...|...|++++|..++++.++. |. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777776655555555444433222222467888888888888888888888887642 21 222 234666666
Q ss_pred HHHccCChhHHHHHHHHHH
Q 039931 295 GHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~ 313 (783)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.099 Score=45.15 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHH
Q 039931 617 MNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC----DILDRAIIIAAKLLKMAFVP--NVVTTNVLLSHFCKQGMPEKTL 690 (783)
Q Consensus 617 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~ 690 (783)
+..+.+-|.+..+.|. ++..+.-.+-.++++ +..++|+.++++..+.. .| +...+..+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666554 444443333333333 36778999998887753 35 2355556666899999999999
Q ss_pred HHHHHHhhcCCCCCHHHH
Q 039931 691 LWGQKLSEISFDFDETSY 708 (783)
Q Consensus 691 ~~~~~~~~~~~~~d~~~~ 708 (783)
++++++++++|+ +..+.
T Consensus 92 ~y~~~lL~ieP~-n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQTEPQ-NNQAK 108 (152)
T ss_dssp HHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHhcCCC-CHHHH
Confidence 999999999987 55444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.53 Score=54.30 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 039931 395 SSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKA 474 (783)
Q Consensus 395 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 474 (783)
..++..+.+.|..++|.++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4555555666666666654421 10 1122345567777776664332 2566777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 475 GLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ 524 (783)
Q Consensus 475 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 524 (783)
++++.|.+.|..+.. |..+...+...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777766543 33444444445555554444443333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.13 Score=40.47 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 136 MPSESAITILFKSLLRVGD---YGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
+.+...+..+..++...++ .++|..+|++.++..| .++.+...+...+...|++++|+..++++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5677888888888876665 7999999999999887 788899999999999999999999999999875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.093 Score=45.30 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVG---DYGSVWKLFRDMIHLG-PRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
...+.+-|.+..+.| +++..+...+..++++++ ++++++.+|++..+.+ |..+...+-.+.-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445666777777777 478888888899999988 6679999999998876 31234455667777899999999999
Q ss_pred HHHHHHhCCCCCCH
Q 039931 196 LLHVMHKYMCVADF 209 (783)
Q Consensus 196 ~~~~m~~~g~~~~~ 209 (783)
.++.+++. .|+.
T Consensus 93 y~~~lL~i--eP~n 104 (152)
T 1pc2_A 93 YVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHH--CTTC
T ss_pred HHHHHHhc--CCCC
Confidence 99999886 4543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.1 Score=50.28 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 039931 547 MKPAIDAFMDMYRTGLVPD---IVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDP--DITTYNIRMHGYCNI-R 615 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~-g 615 (783)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++ +.| +..++......++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777774 565 55788888888884 899999999999988 567 367788888888884 8
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 039931 616 KMNQAAMMLDELVSAGIV--PNTVTYNTL 642 (783)
Q Consensus 616 ~~~~A~~~~~~m~~~g~~--p~~~~~~~l 642 (783)
+.++|.+.+++.+..+.. |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 899999999999887666 776555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.22 Score=40.14 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHLG------PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+...|..|...+.+.|++..|...|+.+++.- ..+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455566666666666666666666655431 1134455666666666777777777776666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=1.5 Score=36.44 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=73.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
.-.|.+++..++..+..... +..-+|-+|.-....-+-+-..++++.+-+. .| ...+|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 34566777777776666552 4445555555555555555555555544332 11 12233333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG 561 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 561 (783)
.-+-.+- .+.......++.....|+-+.-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3332221 1233344445556666666666666666433 234566666666666666666666666666666665
Q ss_pred C
Q 039931 562 L 562 (783)
Q Consensus 562 ~ 562 (783)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.60 E-value=7.9e-05 Score=76.10 Aligned_cols=223 Identities=12% Similarity=0.091 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
+.+|..|.+++.+.|++.+|+..|-+ ..|+..|..++....+.|.+++-+.++.-..+.. .++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34566666666666655555543321 1233345555555555555555555544333321 222222345555
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
|++.++..+-.+++. .||+.-...+.+-|...|.++.| +-+|. ++.-|..|...+.+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAA-------Kilys---------~isN~akLAstLV~ 182 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAA-------KLLYN---------NVSNFGRLASTLVH 182 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTS-------STTGG---------GSCCCTTTSSSSSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHH-------HHHHH---------hCccHHHHHHHHHH
Confidence 555555433222221 24444444444555555555444 12222 22334445555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|++..|.+.-++. -++.||..+-.+|...+.+.-|.-.--.++-..-. ...++..|-..|-+++-+.+
T Consensus 183 L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 183 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHH
Confidence 66666555443221 25567777777777777766654443333322111 11234456666777776766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
++.-... -....-.|+-|.-.|++-
T Consensus 252 lEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 252 LEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 6665532 112455566665555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.29 Score=39.46 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVG------IMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
+..-+-.|...+.+.|+++.|...|+.+++.- -.+....+..|..++.+.|+++.|+..++++++..|
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34456688899999999999999999987641 134567889999999999999999999999998766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.21 E-value=1.1 Score=39.73 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..|+++.|.++.+++. +...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+.-..
T Consensus 17 ~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455555555544431 444555555555555555555555554331 2223333444444444444
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333321 22223334445555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.91 E-value=1.8 Score=38.37 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=57.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 039931 506 FCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRA 585 (783)
Q Consensus 506 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 585 (783)
..+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777666554 1566677777777777777777776665432 23344445556666665
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 586 DELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDE 626 (783)
Q Consensus 586 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 626 (783)
.++-+.....|- ++....++.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555554444331 34444555566666666666644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.68 Score=38.34 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGS---VWKLFRDMIHLG-PRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
...+.+-+.+....| .++..+--.+..+++++.+... ++.++++..+.+ |...-...-.+.-++.+.|++++|++
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 445556666666656 4788887788888998887766 889999988765 21233344556778889999999999
Q ss_pred HHHHHHhCC
Q 039931 196 LLHVMHKYM 204 (783)
Q Consensus 196 ~~~~m~~~g 204 (783)
.++.+++..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998763
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.25 E-value=3.1 Score=34.56 Aligned_cols=137 Identities=14% Similarity=0.013 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. .| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 45566666666665543 13333444444333333333333333333221 11 1223444444443
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 422 (783)
+-.+-. +....+..++.....|+-++-.+++..+... -+|+......+..+|.+.|+..+|.+++.+.-+.|.
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333221 3334445555556666666666666664332 245555555666666666666666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.54 Score=38.93 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhH
Q 039931 616 KMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC----DILDRAIIIAAKLLKMAFVP--NVVTTNVLLSHFCKQGMPEKT 689 (783)
Q Consensus 616 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A 689 (783)
.+..+.+-|.+....|. |+..+--.+..++.+ ....+++.+++++...+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555554443 444332222223332 35667999998887753 24 223344555589999999999
Q ss_pred HHHHHHHhhcCCCCCHHHH
Q 039931 690 LLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 690 ~~~~~~~~~~~~~~d~~~~ 708 (783)
+++++.+++..|. +..+.
T Consensus 94 ~~~~~~lL~~eP~-n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ-NNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHhCCC-CHHHH
Confidence 9999999999987 55554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.00019 Score=73.40 Aligned_cols=214 Identities=11% Similarity=0.025 Sum_probs=122.9
Q ss_pred CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 039931 208 DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV 287 (783)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 287 (783)
...+|..|..+....|++.+|++.+-.| -|...|..+|....+.|.+++-++.+...++..- ++.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~ 117 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESY 117 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccc
Confidence 3456777778887778887776432111 3666777788888888888887777776665422 444
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------
Q 039931 288 TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG---------------- 351 (783)
Q Consensus 288 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------- 351 (783)
.=+.|+-+|++.+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+.+-.
T Consensus 118 IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 118 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSST
T ss_pred cHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 55677778888777665444332 2444444555666666677776666665443311
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 039931 352 ----ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKV 427 (783)
Q Consensus 352 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (783)
-.-++.||-.+-.+|...+.+.-|.-.--.++-. |+ -...++..|...|.+++-+.+++.-... -.....
T Consensus 191 daArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmG 264 (624)
T 3lvg_A 191 DGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 264 (624)
T ss_dssp TTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHH
T ss_pred HHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHH
Confidence 0125556666666666666665554333222211 11 1223455566677777766666665532 123555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 039931 428 AFTVLLDGYFRIGDLIGAQSLWN 450 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~ 450 (783)
.|+-|.-.|++- ++++..+.++
T Consensus 265 mFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHHHHHHHhc-CHHHHHHHHH
Confidence 666666666654 3444444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.77 E-value=1.3 Score=37.79 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH-HHHHHHHHHH------HhcCChhHHHHHHHHHHh
Q 039931 101 GSDFRVLDALLHGYLRVEMS------AEVMEILYRMREVGIMPSE-SAITILFKSL------LRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~~~~-~~~~~ll~~l------~~~g~~~~A~~~~~~~~~ 167 (783)
|.|+.+|-..+...-+.|++ ++.+.+|+++... ++|+. ..|...+..+ ...++.++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777777777777777888 8888899888774 35542 1122222221 234799999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 168 LGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
.+-.. ...|.....--.+.|++..|.+++.+....+..| .....+.+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 64333 7788888888889999999999999999887443 444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.08 E-value=3.1 Score=34.62 Aligned_cols=57 Identities=14% Similarity=-0.024 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPN--VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
.+..+++.+++++.+.+ |. ...+..+.-|+.+.|++++|+++.+.+++..|+ +..+-
T Consensus 57 ~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~-N~QA~ 115 (134)
T 3o48_A 57 NDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-CHHHH
Confidence 46779999999988755 52 355556666899999999999999999999987 55443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.89 E-value=1.6 Score=37.23 Aligned_cols=103 Identities=11% Similarity=-0.010 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHhH-HHHHHHH------HHccCChhHHHHHHHHHHhC
Q 039931 249 PNVVVYNALLNGYVKARDI------DQANMLYEEMRSRDIAPDAVT-FNIIVSG------HCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 249 p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t-~~~ll~~------~~~~g~~~~A~~~~~~~~~~ 315 (783)
-|..+|-..+...-+.|++ ++.+++|++.... ++|+... |...+.. +...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3678888888888888998 8888899988774 5665321 1111111 11225555555555555443
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039931 316 GLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGIS 353 (783)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 353 (783)
+-.- ..+|......-.+.|++..|.+++.+.+..++.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2222 444444444444555555555555555554444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.18 E-value=25 Score=40.22 Aligned_cols=348 Identities=11% Similarity=0.057 Sum_probs=177.3
Q ss_pred HHHHHHHHhcCChhHH-HHH-HHHHHhCCCCCCHhHHHHH-HHHHHccCChhHHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 039931 255 NALLNGYVKARDIDQA-NML-YEEMRSRDIAPDAVTFNII-VSGHCKYGGMEDGDRLLRDLSVSG--LLPNCTLYDITVA 329 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A-~~~-~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~ 329 (783)
.++.+++...|--.+. +.. .+.+-+. . +-.-+.+. --+....|+.+++..+++.....+ -.+....-..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3455666666644332 221 1233332 1 22222322 235666788888887777765532 1222333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHH--HH--HH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGI-------SPSIFAFNSIIAAYSRAGL-EENAFEAYKIMHQFGLTPSSCT--CS--SL 397 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~--~~--~l 397 (783)
+....|..+++..++...+...- .+....-.++.-+.+-.|. -+++.+.+..+.... +..+ .. ++
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 56666665667776666554311 0112222333333333332 245556666555432 2111 12 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHH
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLL--DGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS---AYINGLS 472 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~li~~~~ 472 (783)
...++..|+.+....++..+.+.. +..+...+. -++...|+.+.+..+.+.+... ..|. .-|. ++.-+|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAya 571 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhc
Confidence 333456677777777777766542 223333333 3444678888888888877763 1122 2222 2334667
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRM-KPAI 551 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~ 551 (783)
..|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|+
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 7888777777888877641 2223333333334445677677777777666543 34444444444455555554 5677
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcC---------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 039931 552 DAFMDMYRTGLVPDIVTYNTLIGGYCKAL---------DIVRADELVNKMYAG-GLDPDITTYNIRMHGYCNIRKMN 618 (783)
Q Consensus 552 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 618 (783)
..+..+.. .+|..+-..-+.++...| ++...++.+...... .-.++...-..+..+....|+-.
T Consensus 650 d~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 650 DVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 88888775 455555544444444333 344444444444432 22344555556667777666543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=7.3 Score=32.82 Aligned_cols=58 Identities=14% Similarity=-0.034 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETS 707 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~ 707 (783)
....+++.+++++...+-.-.......+.-++.+.|++++|+++.+.++++.|+ +..+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~QA 113 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHH
Confidence 467799999999887431112234445555899999999999999999999987 5443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.72 E-value=18 Score=37.70 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--HH
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRT--GLVPD---IVTYNTLIGGYCKALDIVRADELVNKMYA----GGLDPDI--TT 603 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~ 603 (783)
..|...|...|++.+|..++..+... |..+. ...+...+..|...+++.+|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677788888888888888887632 21111 34566677788888888888888887642 2222322 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH-----HHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039931 604 YNIRMHGYCNIRKMNQAAMMLDELVSA-GIVPNTVTYNTLMN-----GVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLL 677 (783)
Q Consensus 604 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~-----~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll 677 (783)
|...+..+...+++.+|.+.|.+..+. ...-|...+...+. .........--.+..+.....-.++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 666778888888999888888877641 11223322222211 111111111111222222222235567788888
Q ss_pred HHHHhc--CChhhHHHHHHHHh
Q 039931 678 SHFCKQ--GMPEKTLLWGQKLS 697 (783)
Q Consensus 678 ~~~~~~--g~~~~A~~~~~~~~ 697 (783)
.+|... .+++...+.++..+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhchHhhhHHHHHHHHHHh
Confidence 877654 34555555544433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.69 E-value=19 Score=35.24 Aligned_cols=81 Identities=6% Similarity=-0.003 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---CChhHHHHHHHHHHhCCCCCcHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKY---GGMEDGDRLLRDLSVSGLLPNCTLYDI 326 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 326 (783)
+......+...|.+.|++.+|..-|-. |-.-|...+..++--+.+. |...++--.. -.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH
Confidence 667777888888888988888876641 1111345555555444333 4333322221 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 039931 327 TVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
++ .|.-.|++..|..+|+...+
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHHH
Confidence 22 25567788888888776653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.47 E-value=5.6 Score=44.39 Aligned_cols=44 Identities=14% Similarity=0.013 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
-|..|.....+.+.++||.+.++..+... +++.++.-|+..|..
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~ 658 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQ 658 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHh
Confidence 36666666677778888888888877655 567777777777753
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.79 E-value=3.4 Score=42.46 Aligned_cols=71 Identities=8% Similarity=-0.047 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHhHH
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHK-----YMCVADFFAYN 213 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 213 (783)
...++..+...|++.+|+..+...+...| .+...|..++.++.+.|+..+|++.|++..+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556666777777777777777776655 5666777777777777777777777776543 36777665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.60 E-value=8.8 Score=31.90 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=30.8
Q ss_pred CChhHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 564 PDIVTYNTLIGGYCKALD---IVRADELVNKMYAGGLDP--DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
|+..+--.+..++.+..+ ..+++.+++.+.+.+ | ....+..|.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 343443334444444333 223445555544422 2 123333444555555555555555555554 34443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.12 E-value=12 Score=41.83 Aligned_cols=54 Identities=13% Similarity=-0.056 Sum_probs=40.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
+.+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556788888888888877763 3367788888888888888888888877664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.04 E-value=4.2 Score=41.77 Aligned_cols=133 Identities=12% Similarity=-0.050 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHhcCCCCCH
Q 039931 102 SDFRVLDALLHGYL---RVEMSAEVMEILYRMREV--GI-MPSESAITILFKSLLRVGDYG-SVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 102 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--g~-~~~~~~~~~ll~~l~~~g~~~-~A~~~~~~~~~~~~~~~~ 174 (783)
.|...|..++..-. ..|+.+.|...+++++.. |. -++.. ...+- ....-+++.. .
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~ 171 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------V 171 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------H
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------H
Confidence 45566777665433 458889999999888765 31 11110 01111 1112222221 1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHH
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVV 253 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~ 253 (783)
.+...++..+...|++++|...+..+.... +-+...+..+|.++.+.|+..+|+..|+..++.+.+-....+.|....
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 234556778889999999999999887664 568889999999999999999999988888777766666666665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.47 E-value=54 Score=34.10 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC--hhH
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQK--GLLPD---NFTFNIIINGFCKQGRMKPAIDAFMDMYR----TGLVPD--IVT 568 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~ 568 (783)
..|...+...|++.+|..++..+... |..+. ...+...+..|...+++..|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34566666777777777777776532 22211 23455566677777777777777776532 222222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55666666677777777777766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 783 | ||||
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.002 |
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.5 bits (89), Expect = 0.002
Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 6/121 (4%)
Query: 334 AGRLDEAMEFFEDMFEKGISP-SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC 392
G+L +A+E + + SP +S I G E A E + L P
Sbjct: 9 EGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYL 64
Query: 393 TCSSLLVGLCK-KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNE 451
+S L L K + G V + D L +
Sbjct: 65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124
Query: 452 L 452
+
Sbjct: 125 I 125
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.31 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.29 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.26 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.25 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.12 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.12 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.12 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.11 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.84 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.84 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.78 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.59 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.43 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.37 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.96 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.92 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.77 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.79 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.15 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.75 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.1e-21 Score=199.12 Aligned_cols=378 Identities=14% Similarity=0.046 Sum_probs=284.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 039931 328 VAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRL 407 (783)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 407 (783)
...+.+.|++++|.+.++++.+..+. +...+..+...|.+.|++++|+..|++..+.. +-+..++..+...+.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 34456678888888888887776433 56777778888888888888888888877754 22556777788888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 039931 408 PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 487 (783)
++|+..+....+.... +..............+....+............. ...............+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHh
Confidence 8888888887776443 4445555555555566666666555555444333 4444555556667777888888887777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039931 488 SRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIV 567 (783)
Q Consensus 488 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 567 (783)
.... +.+...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++....+ +.+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 6643 345667777788888889999999998888776443 67788888888999999999999998888754 44677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV 646 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 646 (783)
.+..+...+.+.|++++|++.+++..+. .| +..+|..+...+...|++++|.+.++...... ..+...+..+...+
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 7888888899999999999999998873 45 56788888999999999999999998887632 23344555555555
Q ss_pred hh-ccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q 039931 647 CC-DILDRAIIIAAKLLKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI 718 (783)
Q Consensus 647 ~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~ 718 (783)
.. |++++|++.++++++ +.|+ ..+|..+...|.+.|++++|+..++++++++|+ ++.+|..|+++|..+
T Consensus 316 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEM 386 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 44 789999999999887 5575 467888888999999999999999999999987 888999999998654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.2e-20 Score=192.14 Aligned_cols=382 Identities=14% Similarity=0.043 Sum_probs=235.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
+...+.+.|++++|.+.++++++.. +.+..++..+...+.+.|++++|+..|+++++..| .+..+|..++..+.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 5567888899999999999988875 45678888899999999999999999999988876 567788899999999999
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhH
Q 039931 190 IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQ 269 (783)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 269 (783)
+++|+..+....+.. +.+..............+....+. .......... .................+....
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAV-------QAYVSALQYN-PDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHH-------HHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccc-------cccccccccc-cccccccccccccccccchhhh
Confidence 999999999888765 344445555555555555555542 2222222222 2344555556666667777777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 270 ANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 270 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
+...+......... +...+..+...+...|+.++|...+++..+..+. +...+..+...+...|++++|...+++...
T Consensus 154 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 231 (388)
T d1w3ba_ 154 AKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred hHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence 77777777665322 4455666666666677777777777666654322 344555566666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 039931 350 KGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAF 429 (783)
Q Consensus 350 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (783)
.+.. +...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+
T Consensus 232 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 308 (388)
T d1w3ba_ 232 LSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSL 308 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred Hhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchhh
Confidence 4332 44555556666666666666666666665543 1234455555555555566666665555555442 2244455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 039931 430 TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP-NNFAYNSLIAGFCN 508 (783)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~ 508 (783)
..+...+.+.|++++|++.|++..+..+. +..++..+...|.+.|++++|.+.|++..+. .| +...|..+...|.+
T Consensus 309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 309 NNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555443322 3444455555555555555555555555443 22 23344444444444
Q ss_pred cC
Q 039931 509 RG 510 (783)
Q Consensus 509 ~g 510 (783)
.|
T Consensus 386 ~~ 387 (388)
T d1w3ba_ 386 MQ 387 (388)
T ss_dssp TC
T ss_pred cC
Confidence 33
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-11 Score=124.59 Aligned_cols=242 Identities=14% Similarity=0.032 Sum_probs=137.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039931 327 TVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGR 406 (783)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 406 (783)
....+.+.|++++|...|+++++..+. +..+|..+...+...|++++|...|.+..+... -+...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 344466677777777777777665433 566666677777777777777777776665432 245556666666666677
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 039931 407 LPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
+++|.+.+++....... ....+........ ..+.......+..+...+...+|.+.|.+
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 77776666666654221 1110000000000 00000111111223334455566666666
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 039931 487 MSRIG-FVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP- 564 (783)
Q Consensus 487 m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 564 (783)
..+.. -.++..++..+...+...|++++|...+++.....+. +...|..+...|.+.|++++|.+.|++.++. .|
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH--hhc
Confidence 55432 1234555666666667777777777777776665333 4666666777777777777777777776664 34
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 565 DIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 565 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+..+|..+..+|.+.|++++|++.|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677777777777777777776665
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.4e-11 Score=124.61 Aligned_cols=244 Identities=11% Similarity=0.020 Sum_probs=179.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 039931 291 IIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG 370 (783)
Q Consensus 291 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 370 (783)
.....+.+.|++++|...|+++.+..+. +...|..+...+...|++++|...|++..+..+. +...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 4556788999999999999999987543 5778899999999999999999999999987554 7888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 039931 371 LEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWN 450 (783)
Q Consensus 371 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (783)
++++|.+.++...... |+............... +.......+..+...+.+.+|.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGA-------------------GLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhc-------------------ccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999998753 33221110000000000 00011111222334455667777777
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039931 451 ELNRRKI-FPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLP 529 (783)
Q Consensus 451 ~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 529 (783)
+..+..+ .++...+..+...+...|++++|...|++..... +-+..+|..+...+.+.|++++|.+.|++..+..+.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 7665432 2356777788888888899999999998887653 345677888888889999999999999988876433
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
+..++..+...|.+.|++++|++.|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677888888999999999999999988876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=9.1e-09 Score=102.56 Aligned_cols=216 Identities=12% Similarity=-0.035 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
..+++.+...+.+.+..++|+.+++++++.+ +.+..+|+.....+...| ++++|+..++..++..| .+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence 3577888888899999999999999999987 567788999999988876 58999999999999876 67889999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 262 (783)
.+.+.|++++|+..++++.+.. +.+..+|..+...+.+.|++++| ...++...+..+. +..+|+.+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~A-------l~~~~~al~~~p~-n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNE-------LQYVDQLLKEDVR-NNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH-------HHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHCCc-cHHHHHHHHHHHH
Confidence 9999999999999999999875 56788999999999999999998 4667777665433 7788888887777
Q ss_pred hcCC------hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHH
Q 039931 263 KARD------IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLP-NCTLYDITVAGLC 332 (783)
Q Consensus 263 ~~g~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 332 (783)
+.+. +++|++.+...++..+. +...|+.+...+. ....+++.+.+....+....+ +...+..+...|.
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 7665 56888888888876433 5666766655544 444677777777776544332 3444555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1e-08 Score=104.27 Aligned_cols=243 Identities=11% Similarity=0.009 Sum_probs=128.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC----C-CCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCCh
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKYM----C-VADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNV 251 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~ 251 (783)
++.+...+...|++++|...+++..+.. . .....++..+...+...|++..|...+..+..+.............
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 3444444445555555555554443211 0 0112234445555666666666654443333333322211111122
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC--cH
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDI----APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS----GLLP--NC 321 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~ 321 (783)
..+..+...+...|+++.+...+........ .....++......+...++...+...+...... +..+ ..
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 3556677888899999999999988876422 222334455555666777777777776655432 1111 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 039931 322 TLYDITVAGLCWAGRLDEAMEFFEDMFEKGISP---SIFAFNSIIAAYSRAGLEENAFEAYKIMHQ----FGLTPS-SCT 393 (783)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~ 393 (783)
..+..+...+...|+.++|...+++........ ....+..+...+...|++++|...++.... .+..|+ ..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 234444555666677777777776655432221 133444566666677777777766666542 122222 234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 039931 394 CSSLLVGLCKKGRLPEAWDLLCKMIE 419 (783)
Q Consensus 394 ~~~li~~~~~~g~~~~a~~~~~~~~~ 419 (783)
+..+...|.+.|++++|.+.+++.++
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555566666666666666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=5.6e-09 Score=101.16 Aligned_cols=222 Identities=9% Similarity=-0.081 Sum_probs=150.9
Q ss_pred ChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039931 476 LVDEAYGVFLEMSRIGFVP---NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 476 ~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 552 (783)
+.+.++.-+++........ ...+|..+...|.+.|++++|...|++.++..+. ++.+|+.+..+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666666542111 1245667778888999999999999998887544 78889999999999999999999
Q ss_pred HHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 553 AFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 553 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
.|+++++. .| +..++..+...|...|++++|.+.+++..+. .| +......+..++.+.+..+.+..+.......
T Consensus 93 ~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 93 AFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 99999885 45 5678888889999999999999999998874 34 4555555556666667666666666655543
Q ss_pred CCCCCHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCC
Q 039931 631 GIVPNTVTYNTLMNGVCC-----DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFD 704 (783)
Q Consensus 631 g~~p~~~~~~~li~~~~~-----~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d 704 (783)
...+- .++. +..+.. +..+.+...+..... ..|+. .+|..+...|...|++++|+..++++++.+|+ +
T Consensus 169 ~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 242 (259)
T d1xnfa_ 169 DKEQW--GWNI-VEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N 242 (259)
T ss_dssp CCCST--HHHH-HHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T
T ss_pred chhhh--hhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-C
Confidence 22221 2221 111111 223333333332222 22333 46777888899999999999999999999976 5
Q ss_pred HHHH
Q 039931 705 ETSY 708 (783)
Q Consensus 705 ~~~~ 708 (783)
.+-|
T Consensus 243 ~~~~ 246 (259)
T d1xnfa_ 243 FVEH 246 (259)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 4444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.1e-08 Score=99.88 Aligned_cols=142 Identities=8% Similarity=-0.040 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG-LEENAFEAYKIMHQFGLTPSSCTCSSLLVGLC 402 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 402 (783)
++.+...+.+.+..++|+++++++++..+. +...|+....++...| ++++|+..++...+... -+..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHH
Confidence 334444444555555555555555554333 4444555544444443 24555555555544331 13444444444455
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039931 403 KKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYIN 469 (783)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 469 (783)
+.|++++|+..++++++.... +..+|..+...+.+.|++++|++.++.+.+.++. +...|+.+..
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~ 188 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYF 188 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHH
Confidence 555555555555555544322 4444444444455555555555555444444332 3344444333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=4.7e-08 Score=99.19 Aligned_cols=272 Identities=11% Similarity=-0.009 Sum_probs=196.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-C----CHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPS----ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR-P----SNYT 176 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~----~~~~ 176 (783)
........+...|++++|++.+++.++.....+ ..+++.+...+...|++++|+..|++..+..+. + ...+
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456778899999999999999988753222 346777889999999999999999998764221 1 1235
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC---CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH----C
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKY----MCVA---DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE----E 245 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~----~ 245 (783)
+..+...+...|++..+...+.+.... +... ....+..+...+...|+++.+.. .+..... .
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~-------~~~~~~~~~~~~ 166 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-------SARSGIEVLSSY 166 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH-------HHHHHHHHhhhh
Confidence 677778889999999999998876542 1111 12356677788889999999853 4443332 2
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 039931 246 GLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR----DIAPD--AVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLP 319 (783)
Q Consensus 246 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 319 (783)
+......++..+...+...+++..+...+.+.... +..+. ...+..+...+...|+.+.|...++.........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 246 (366)
T d1hz4a_ 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246 (366)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc
Confidence 33334556677778888999999999988876542 11111 2235556667888999999999999887654332
Q ss_pred ---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 320 ---NCTLYDITVAGLCWAGRLDEAMEFFEDMFEK----GISPS-IFAFNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 320 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
....+..+...+...|++++|...+++.... +..|+ ..++..+...|.+.|++++|.+.+++..+
T Consensus 247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345566788899999999999999988642 33333 45788889999999999999999988754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.5e-09 Score=109.92 Aligned_cols=239 Identities=6% Similarity=-0.089 Sum_probs=154.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRG--KLNEALKLEREMRQKGLLPDNFTFN-IIINGFCKQGRMKPA 550 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A 550 (783)
.|++++|+..++...+.. +-+...|..+..++...+ ++++|...+.++.+.... +...+. .....+...|..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 445677888888877653 335556666666666554 477888888887776433 444443 344566677888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
+..++.+++.. +-+...|+.+...+.+.|++++|...+....+ +.|+. ......+...+..+++...+...+..
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 88888877753 23577788888888888888777665554443 12221 22334455667777888888877753
Q ss_pred CCCCCHHHHHHHHHHHh-hccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 631 GIVPNTVTYNTLMNGVC-CDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 631 g~~p~~~~~~~li~~~~-~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
.. ++...+..+...+. .++.++|...+.+..+ ..|+. .+|..+...+...|++++|+++++++++++|. +...|
T Consensus 238 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~ 313 (334)
T d1dcea1 238 RA-EPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYL 313 (334)
T ss_dssp CC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred Cc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHH
Confidence 21 11122222222222 2678888888888777 44644 67778888889999999999999999999975 66778
Q ss_pred HHHHHHHhhhhHHHHHH
Q 039931 709 KIMDRAYHNIQENAEFF 725 (783)
Q Consensus 709 ~~l~~~y~~~~~~~~~~ 725 (783)
+.|...+. +++.+...
T Consensus 314 ~~L~~~~~-~e~~~~~~ 329 (334)
T d1dcea1 314 DDLRSKFL-LENSVLKM 329 (334)
T ss_dssp HHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHh-HhhHHHHH
Confidence 77776553 24444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=6.6e-08 Score=96.07 Aligned_cols=186 Identities=8% Similarity=0.012 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 442 LIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLERE 521 (783)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 521 (783)
.++|..+|++..+...+.+...|...+..+.+.|++++|..+|+++.+........+|...+..+.+.|+++.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35555666665544333344555555555666666666666666665532111233455555555566666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 039931 522 MRQKGLLPDNFTFNIIING-FCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG-LDP 599 (783)
Q Consensus 522 m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 599 (783)
+.+.+.. +...|...... +...|+.+.|..+|+.+++. .+.+...|...++.+.+.|++++|..+|++.++.. ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 6555332 22233222222 22345566666666666554 12344555666666666666666666666655532 222
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 600 D--ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 600 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+ ...|...+..-...|+.+.+.++++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 23455555555555666666666655543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=6.7e-08 Score=95.99 Aligned_cols=187 Identities=11% Similarity=0.027 Sum_probs=143.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 039931 406 RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFL 485 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 485 (783)
..++|..++++.++...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888877655556677888888888889999999999888876544345678888888888899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC
Q 039931 486 EMSRIGFVPNNFAYNSLIAG-FCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG-LV 563 (783)
Q Consensus 486 ~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 563 (783)
.+.+.+ +.+...|...... +...|+.+.|..+|+.+.+..+ .++..|...++.+.+.|+++.|..+|++.++.. ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 888764 3344444444333 3346888999999999888633 367888899999999999999999999988753 33
Q ss_pred CC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 564 PD--IVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 564 p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
|+ ...|...+..-...|+.+.+.++.+++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 35788888877888999999999988876
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=2.9e-08 Score=100.08 Aligned_cols=234 Identities=7% Similarity=-0.029 Sum_probs=169.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCChh
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGD--YGSVWKLFRDMIHLGPRPSNYTF-NALILGFCRNGCIR 191 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~--~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 191 (783)
...|++++|+..++.+++.+ +.+...|..+..++...++ +++|+..+.++++..+ ++...+ ......+...+.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccH
Confidence 34455889999999999876 5677888888888877664 7899999999999876 455554 45557778899999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 039931 192 IGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQAN 271 (783)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 271 (783)
+|+..++++.+.. +.+...|+.+...+.+.|++++|...+..+..++..-. .....+...+..+++.
T Consensus 162 ~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~a~ 228 (334)
T d1dcea1 162 EELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL------------ELVQNAFFTDPNDQSA 228 (334)
T ss_dssp HHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH------------HHHHHHHHHCSSCSHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH------------HHHHHHHHhcchhHHH
Confidence 9999999998876 46788999999999999999999877777766655432 2233455667788888
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039931 272 MLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG 351 (783)
Q Consensus 272 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 351 (783)
..+........ ++...+..+...+...++.++|...+.+..+.++. +...+..+...|...|+.++|.+.|++..+.
T Consensus 229 ~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l- 305 (334)
T d1dcea1 229 WFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV- 305 (334)
T ss_dssp HHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 88888877643 34555666666666777777777777776654322 4455666677777777777787777777775
Q ss_pred CCC-CHHHHHHHHHHHH
Q 039931 352 ISP-SIFAFNSIIAAYS 367 (783)
Q Consensus 352 ~~p-~~~~~~~li~~~~ 367 (783)
.| +...|+.|...+.
T Consensus 306 -dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 306 -DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp -CGGGHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHh
Confidence 33 3344555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=5.5e-08 Score=93.92 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
..++..+..+|.+.|++++|+..|++.++.. +.+..+|+.+...+.+.|++++|++.|+++++..| .+..++..++.+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHH
Confidence 3567788899999999999999999999887 56788999999999999999999999999999876 466778888999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQT 225 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (783)
+...|++++|...|++..+.. +.+......+...+.+.+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 155 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEK 155 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhH
Confidence 999999999999999988764 33444444444444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=4.5e-06 Score=68.55 Aligned_cols=96 Identities=9% Similarity=-0.015 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
+..-...+.+.|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..|.++++.+| .+...|..++.++..
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHH
Confidence 3445678899999999999999999987 67888999999999999999999999999999987 688899999999999
Q ss_pred cCChhhHHHHHHHHHhCC
Q 039931 187 NGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g 204 (783)
.|++++|+..|++..+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 999999999999999764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=5.7e-06 Score=80.77 Aligned_cols=127 Identities=12% Similarity=-0.103 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChhHHHHH
Q 039931 503 IAGFCNRGKLNEALKLEREMRQK----GLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL---VP--DIVTYNTL 572 (783)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~l 572 (783)
...|...+++++|.+.|.+..+. +-.+ -..+|+.+..+|.+.|++++|.+.+++..+.-. .+ ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566666677776666665432 1111 124566666777777777777777766553200 11 12344455
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 573 IGGYCK-ALDIVRADELVNKMYA----GGLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 573 i~~~~~-~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
...|.. .|++++|++.+++..+ .+-.+. ..++..+...|...|++++|+..|++...
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 555533 4777777777776654 111111 24466667777777777777777777665
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=5.4e-06 Score=80.93 Aligned_cols=138 Identities=8% Similarity=-0.129 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCCHHhHHHHHHHHHh-cCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 176 TFNALILGFCRNGCIRIGESLLHVMHKY----MC-VADFFAYNILINAYCI-RGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 176 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
+|+.++.+|.+.|++++|...+++..+. |. .....++..+...|-. .|++++|+..+++|.++.... +-.+
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~---~~~~ 155 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVA 155 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc---Cchh
Confidence 4455555555556666665555544331 10 0112344445555533 477777776665555554432 1111
Q ss_pred -ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh------HHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 039931 250 -NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV------TFNIIVSGHCKYGGMEDGDRLLRDLSVSG 316 (783)
Q Consensus 250 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 316 (783)
...+|..+...|.+.|++++|++.|++........... .+...+..+...|+.+.|...+++..+..
T Consensus 156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 13467888899999999999999999987753221111 12233334556677777777777766543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.6e-05 Score=71.77 Aligned_cols=129 Identities=5% Similarity=-0.122 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
.|+. ...+...|+++.|++.|+++. +|+..+|..+...+.+.|++++|++.|++.++.+| .+...|..+..++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence 4554 567788999999999998753 57788999999999999999999999999999887 67889999999999
Q ss_pred hcCChhhHHHHHHHHHhCCC--------------CCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCC
Q 039931 186 RNGCIRIGESLLHVMHKYMC--------------VAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGL 247 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~--------------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~ 247 (783)
+.|++++|+..|++...... ..+ ..++..+..++.+.|++++| .+.+....+...
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A-------~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA-------EEQLALATSMKS 151 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHTTCC
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHhcCC
Confidence 99999999999999875321 011 24566778889999999999 456666665433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.1e-05 Score=70.98 Aligned_cols=134 Identities=12% Similarity=-0.032 Sum_probs=100.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 039931 146 FKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQT 225 (783)
Q Consensus 146 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (783)
...+...|+++.|++.|.++ .+|++.+|..++.++...|++++|++.|++.++.. +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 45578899999999999875 34788889999999999999999999999999876 56788999999999999999
Q ss_pred chHhhhccchHHHHHHH-----HHCCCC--CC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039931 226 SYALGKCGAGRMIFDMI-----QEEGLS--PN-VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAP 284 (783)
Q Consensus 226 ~~A~~~~~~a~~~~~~m-----~~~g~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 284 (783)
++|+..|+.|...+..- ...|.. ++ ..++..+...+.+.|++++|.+.|+...+....|
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99965443332211000 000110 11 2456677788889999999999999888765544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=8.6e-06 Score=71.18 Aligned_cols=107 Identities=13% Similarity=-0.012 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
.+......|.+.|++++|+..|.++++.+ +.+...|..+...+...|++++|+..|+.+++..| .+..+|..++.++.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHH
Confidence 35566778999999999999999999987 67889999999999999999999999999999876 67789999999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
..|++++|...+++..+.. +.+...+..+
T Consensus 90 ~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l 118 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVK-PHDKDAKMKY 118 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 9999999999999998865 3344444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=0.0015 Score=61.93 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK----KGRLPEAWDLLCKMIEK 420 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 420 (783)
+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 3344444444455555555555544443 23333333333333 33444444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.4e-05 Score=64.01 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKM 617 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 617 (783)
...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 334445555555555555555431 2234445555555555555555555555555421 22444555555555555555
Q ss_pred HHHHHHHHHHHH
Q 039931 618 NQAAMMLDELVS 629 (783)
Q Consensus 618 ~~A~~~~~~m~~ 629 (783)
++|+..|++.++
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.0024 Score=60.28 Aligned_cols=223 Identities=12% Similarity=-0.021 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039931 391 SCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNELNRRKIFPDAVAFSA 466 (783)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 466 (783)
+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3455556666677778888888888777765 45555566666665 456777777777766654 3333334
Q ss_pred HHHHHH----ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 467 YINGLS----KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFC----NRGKLNEALKLEREMRQKGLLPDNFTFNIII 538 (783)
Q Consensus 467 li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 538 (783)
+...+. ...+.+.|...++...+.|. ......+...+. .......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 433332 24556667777777666542 122222222222 233455555555555543 2455555555
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 539 NGFCK----QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADELVNKMYAGGLDPDITTYNIRMHG 610 (783)
Q Consensus 539 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 610 (783)
..|.. ..+...+...++...+.| +......+...|.. ..++++|...|++..+.| ++..+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 55554 334455555555555532 34444444444443 345666666666665543 33444445554
Q ss_pred HHh----cCCHHHHHHHHHHHHHCC
Q 039931 611 YCN----IRKMNQAAMMLDELVSAG 631 (783)
Q Consensus 611 ~~~----~g~~~~A~~~~~~m~~~g 631 (783)
|.+ ..+.++|.+.|++..+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 443 224555666555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=4e-05 Score=66.72 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=52.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRK 616 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 616 (783)
...|.+.|++++|+..|++.++.. +-+...|..+...|...|++++|++.|+++++. .| +...|..++.+|...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcCC
Confidence 344556666666666666666542 224555666666666666666666666666652 33 34556666666666666
Q ss_pred HHHHHHHHHHHHH
Q 039931 617 MNQAAMMLDELVS 629 (783)
Q Consensus 617 ~~~A~~~~~~m~~ 629 (783)
+++|...+++.+.
T Consensus 94 ~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 94 FRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=1.5e-05 Score=72.61 Aligned_cols=97 Identities=10% Similarity=-0.154 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+......|.+.|++++|+..|.++++.+ +.+...|+.+..+|.+.|++++|+..|+++++..| -+..+|..++.+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg~~ 81 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3445556667777777777777777777665 45666677777777777777777777777776554 456667777777
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHK 202 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~ 202 (783)
+...|++++|+..|++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.12 E-value=9.6e-06 Score=65.84 Aligned_cols=91 Identities=13% Similarity=-0.032 Sum_probs=81.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
.+...+.+.|++++|...|++.++.+ +.+..+|..+...+.+.|++++|+..|++.++..| .+..+|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCC
Confidence 45677889999999999999999887 55789999999999999999999999999999876 67888999999999999
Q ss_pred ChhhHHHHHHHHH
Q 039931 189 CIRIGESLLHVMH 201 (783)
Q Consensus 189 ~~~~A~~~~~~m~ 201 (783)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=1.8e-05 Score=72.06 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 039931 529 PDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIR 607 (783)
Q Consensus 529 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 607 (783)
|+...+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.++ +.| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 566677777888888899999999998888753 33677888888888999999999999998886 556 46778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..+|.+.|++++|+..|++.++
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999888764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=4.8e-05 Score=66.99 Aligned_cols=76 Identities=12% Similarity=-0.105 Sum_probs=60.6
Q ss_pred HHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 639 YNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 639 ~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
|+.+...+.+ +++++|+..++++++ +.| +..+|..+..+|...|++++|+..++++++++|. |..+...+..++.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3333333444 889999999999888 456 5578888888999999999999999999999987 8888877777654
Q ss_pred h
Q 039931 717 N 717 (783)
Q Consensus 717 ~ 717 (783)
.
T Consensus 142 ~ 142 (170)
T d1p5qa1 142 R 142 (170)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.4e-05 Score=65.71 Aligned_cols=107 Identities=10% Similarity=0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh----ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVCC----DILDRAIIIAAKLLKMAFVPNV-VTTNVLLS 678 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~----~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~ 678 (783)
..+++.+...+++++|.+.|++.+.. .|+ ..++..+..++.+ ++.++|+.++++++.....|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35667777788888888888888763 343 3444444444442 4667899999998874423332 36778888
Q ss_pred HHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 679 HFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
+|.+.|++++|+++++++++++|+ +..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~-~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQ-NNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcC-CHHHHHHHHHH
Confidence 999999999999999999999987 67666555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.3e-05 Score=65.88 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCH-HHHHHHHHH
Q 039931 108 DALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDY---GSVWKLFRDMIHLGPRPSN-YTFNALILG 183 (783)
Q Consensus 108 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~---~~A~~~~~~~~~~~~~~~~-~~~~~l~~~ 183 (783)
..|++.+...+++++|.+.|++.+..+ +.+..++..+..+|.+.++. ++|+.+|++++..++.|+. .++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467788888999999999999999988 67889999999999886654 5699999999887665543 478889999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFF 210 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~ 210 (783)
|.+.|++++|++.|+++++.. |+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~--P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE--PQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHhhhHHHHHHHHHHHHhC--cCCH
Confidence 999999999999999999864 5543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00011 Score=64.63 Aligned_cols=113 Identities=6% Similarity=-0.040 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--------------ESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
..+......|.+.|++++|+..|.+.++...... ..+|+.+...|.+.|++++|+..++..++..|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 3566677789999999999999998876521111 24566788889999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 171 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
.++.++..++.++...|++++|+..|++..+.. +.|..+...+-...
T Consensus 94 -~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 94 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred -cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 688899999999999999999999999998865 23555554444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=0.0062 Score=58.88 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=66.1
Q ss_pred CCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 284 PDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSII 363 (783)
Q Consensus 284 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 363 (783)
||..--..+..-|.+.|.++.|..++..+.. |..++..+.+.+++..|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 3433444445555566666666666654322 4445555666666666666655432 455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 039931 364 AAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIG 440 (783)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 440 (783)
..+.+......+ .+.......+......++..|...|.+++...+++..... -..+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 666665554432 1222223334445556666666667777666666665433 2335556666666666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=2.5e-05 Score=66.66 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHH
Q 039931 578 KALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAII 656 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~ 656 (783)
+.+.+++|++.++..++. .| +..++..+..+|...+++..+.+- .+.+++|+.
T Consensus 9 r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------~~~~~~Ai~ 62 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDA------------------------KQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------HHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHH------------------------HHHHHHHHH
Confidence 444566666666666652 34 445555555555544443333221 134567777
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcC-----------ChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHH
Q 039931 657 IAAKLLKMAFVPN-VVTTNVLLSHFCKQG-----------MPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEF 724 (783)
Q Consensus 657 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~ 724 (783)
.++++++ +.|+ ..+|..+...|...| ++++|.++++++++++|. +...+..|... .++.+.
T Consensus 63 ~~~kAl~--l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~----~ka~~~ 135 (145)
T d1zu2a1 63 KFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMT----AKAPQL 135 (145)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH----HTHHHH
T ss_pred HHHHHHH--hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHH----HHHHHH
Confidence 7777776 4453 356666666665544 368899999999999987 66666666544 345666
Q ss_pred HHHHHhcCC
Q 039931 725 FQETSEKSL 733 (783)
Q Consensus 725 ~~~~~~~~~ 733 (783)
..+..++++
T Consensus 136 ~~e~~k~~~ 144 (145)
T d1zu2a1 136 HAEAYKQGL 144 (145)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHhc
Confidence 666666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.84 E-value=0.00027 Score=60.61 Aligned_cols=74 Identities=18% Similarity=-0.027 Sum_probs=54.0
Q ss_pred HHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 039931 639 YNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAY 715 (783)
Q Consensus 639 ~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y 715 (783)
|+.+...+.+ +.+++|++.+.++++. .| +..+|..+..++...|++++|+..++++++++|. |..+...+..+.
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 145 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3333333333 7888888888888773 45 5578888888888888999999888888888887 777766665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.84 E-value=8e-05 Score=60.12 Aligned_cols=86 Identities=20% Similarity=0.058 Sum_probs=49.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIR 615 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 615 (783)
...+.+.|++++|...|++.++. .| +..+|..+..++.+.|++++|+..+++.++ +.| +...|..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCC
Confidence 34455566666666666665554 23 355566666666666666666666666555 233 3455556666666666
Q ss_pred CHHHHHHHHHHH
Q 039931 616 KMNQAAMMLDEL 627 (783)
Q Consensus 616 ~~~~A~~~~~~m 627 (783)
++++|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.78 E-value=0.00058 Score=59.59 Aligned_cols=67 Identities=10% Similarity=-0.131 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q 039931 649 DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI 718 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~ 718 (783)
+++++|+..++++++. .| +..+|..+..++...|++++|+..++++++++|+ +..+...+......+
T Consensus 78 ~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 78 REYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKA 145 (168)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhc--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 7899999999998884 35 5577888888999999999999999999999987 888887777765444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00014 Score=60.34 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------HHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS------NYTFNA 179 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 179 (783)
-+..+...|.+.|++++|+..|++.++.+ +.+..++..+..+|.+.|++++|+..+++++...+... ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 35567788999999999999999999987 56788999999999999999999999999987543211 236777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+...+...+++++|+..|++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 888888999999999999987754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=5.4e-05 Score=62.96 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 141 AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 141 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.+..+...+.+.|++++|+..|.+.+..+| .+..++..+..+|.+.|++++|+..++++++.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 345677889999999999999999999876 67889999999999999999999999998764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.59 E-value=0.00091 Score=58.26 Aligned_cols=117 Identities=7% Similarity=-0.094 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREV---GIMPS-----------ESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~-----------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
..+.-....+.+.|++++|...|.+.+.. ....+ ...|+.+..+|.+.|++++|+..+++.+...|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 35667778889999999999999886642 11111 12355577788999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 039931 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRG 223 (783)
Q Consensus 171 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (783)
.+..+|..+..++...|++++|...|+++++.. +.+..+...+-....+.+
T Consensus 96 -~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 96 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999875 345555555554444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.59 E-value=0.00029 Score=61.74 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 649 DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
+++++|+..+.++++ +.| +..+|..+..+|.+.|++++|++.++++++++|+ +..++..|..++.
T Consensus 91 ~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~ 156 (169)
T d1ihga1 91 SDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQ 156 (169)
T ss_dssp TCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 677788888887777 445 3466777777888888888888888888888876 6667766666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.59 E-value=0.0012 Score=56.30 Aligned_cols=107 Identities=9% Similarity=-0.032 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIM----PS-----------ESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----~~-----------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
.+..-...+.+.|++.+|+..|.++++.-.. ++ ..+++.+...|.+.|++++|++.+.++++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 4555667888999999999999988764211 11 23566688889999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 171 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
.++.+|..++.++...|++++|+..|++..+.. |.|..+...
T Consensus 99 -~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~ 140 (153)
T d2fbna1 99 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNS 140 (153)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred -hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 788899999999999999999999999998864 234444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=4.2e-05 Score=80.61 Aligned_cols=109 Identities=11% Similarity=-0.112 Sum_probs=39.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039931 464 FSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK 543 (783)
Q Consensus 464 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 543 (783)
+..+...+.+.|+.++|...+....... ...++..+.+.+...|++++|...|++..+..+. +...|+.|...+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3333444444444444444443333210 1123444444444555555555555555444322 33445555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 039931 544 QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYC 577 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 577 (783)
.|+..+|...|.+.+... +|-..++..|...+.
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 555555555555554432 233444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.49 E-value=0.00021 Score=60.67 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=40.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----------cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----------ALDIVRADELVNKMYAGGLDP-DITTYNIRMHGY 611 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 611 (783)
+.+.+++|...|+..++.. +.+..++..+..++.. .+.+++|++.+++.++ +.| +..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHHHH
Confidence 4445666666666666542 2244555555555543 2345677777777776 345 456777777776
Q ss_pred HhcC
Q 039931 612 CNIR 615 (783)
Q Consensus 612 ~~~g 615 (783)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 6554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.48 E-value=0.051 Score=52.22 Aligned_cols=134 Identities=11% Similarity=0.026 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHH
Q 039931 137 PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILI 216 (783)
Q Consensus 137 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (783)
|+..-...++..|-+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 333333445555556666666666665441 1344555555666666665555433 2344555555
Q ss_pred HHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 039931 217 NAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGH 296 (783)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 296 (783)
..+........| .+.......+......++..|-..|.+++...+++..... -.++...++.++..|
T Consensus 77 ~~l~~~~e~~la------------~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~ly 143 (336)
T d1b89a_ 77 FACVDGKEFRLA------------QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILY 143 (336)
T ss_dssp HHHHHTTCHHHH------------HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHH------------HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHH
Confidence 555544332211 1111122223333445555555556666555555554322 123444445555555
Q ss_pred Hc
Q 039931 297 CK 298 (783)
Q Consensus 297 ~~ 298 (783)
++
T Consensus 144 ak 145 (336)
T d1b89a_ 144 SK 145 (336)
T ss_dssp HT
T ss_pred HH
Confidence 44
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.00096 Score=58.59 Aligned_cols=104 Identities=9% Similarity=-0.091 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCC-----C--------------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREV--GIM-----P--------------SESAITILFKSLLRVGDYGSVWKLFRDM 165 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-----~--------------~~~~~~~ll~~l~~~g~~~~A~~~~~~~ 165 (783)
...........|++++|...|.+.+.. |.. . ....+..+...+.+.|++++|+..++++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a 93 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 93 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 344446778888999999988888775 210 0 1135677888899999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHh
Q 039931 166 IHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHK-----YMCVADFFA 211 (783)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 211 (783)
++..| .+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 94 l~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 94 TFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99877 7888999999999999999999999998743 577887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.00056 Score=59.79 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVG--------------I-MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR 171 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------------~-~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~ 171 (783)
+......+.+.|++++|+..|.++++.. . +.....++.+...+.+.|++++|+..|.++++..|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p- 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-
Confidence 4555667788889999988888765421 0 12334567788889999999999999999999876
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 172 PSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 172 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
.++.+|..++.++...|++++|+..|++..+.. +.|..+...+....
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 688899999999999999999999999999875 34555555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.0015 Score=57.38 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS-----AGIVPNTVT 638 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 638 (783)
..+..+...+...|++++|+..++++++ +.| +...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4667788888899999999999999887 345 678899999999999999999999888743 577777644
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.96 E-value=0.00068 Score=63.80 Aligned_cols=123 Identities=11% Similarity=-0.049 Sum_probs=82.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhh
Q 039931 113 GYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRI 192 (783)
Q Consensus 113 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 192 (783)
-..+.|++++|+..+++.++.. +.+...+..+...|+..|++++|...|+...+..| .+...+..+...+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHH
Confidence 3457899999999999999987 67889999999999999999999999999998765 344555555555544443333
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 193 GESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 193 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
+..-.......+-+++...+......+...|+.++| ..++++..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A-------~~~~~~a~e 127 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV-------SELALQIEE 127 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHH-------HHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHH-------HHHHHHHHh
Confidence 322211111112123334445556667788999888 455555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.92 E-value=0.0008 Score=63.29 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
+.|++++|+..+++.++..+. |...+..+...|+..|++++|...++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555555555433 555555555555556666666555555555
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0015 Score=68.21 Aligned_cols=121 Identities=9% Similarity=-0.128 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
+.+...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|+..|.+.++..| .+..+|+.+
T Consensus 117 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~L 192 (497)
T d1ya0a1 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQL 192 (497)
T ss_dssp --------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHH
T ss_pred hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHH
Confidence 4445566777777777788877777776665432 134566677778888888888888888887765 566778888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTS 226 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (783)
+..+...|+..+|...|.+.+... +|-..++..|...+.+..+..
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~~~~ 237 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKALESR 237 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhhhh
Confidence 888888888888888888877665 566777777777776654443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.81 E-value=0.0052 Score=52.39 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=51.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-C----------CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCCCC----
Q 039931 149 LLRVGDYGSVWKLFRDMIHLGPR-P----------SNYTFNALILGFCRNGCIRIGESLLHVMHKY-----MCVAD---- 208 (783)
Q Consensus 149 l~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~~~---- 208 (783)
+.+.|++++|+..|++.++..+. | ....|+.+..+|...|++++|...+++.++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445555555555555543211 1 1245666666666666666666666665531 01111
Q ss_pred -HHhHHHHHHHHHhcCCcchHhhhccchHHHHHH
Q 039931 209 -FFAYNILINAYCIRGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 209 -~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~ 241 (783)
..+++.+..+|...|++++|+..+++|.++..+
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 224566677777778877777666655555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0034 Score=48.21 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKM-----AFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDR 713 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~-----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~ 713 (783)
|++++|+..++++++. ...++ ..++..+..++.+.|++++|+..++++++++|+ ++.+++.+..
T Consensus 19 g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~Nl~~ 88 (95)
T d1tjca_ 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGNLKY 88 (95)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 5555555555554331 11222 357888888999999999999999999999998 7777777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.77 E-value=0.01 Score=50.43 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=63.8
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHHHHcCC-CCC----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 039931 533 TFNII--INGFCKQGRMKPAIDAFMDMYRTGL-VPD----------IVTYNTLIGGYCKALDIVRADELVNKMYAG---- 595 (783)
Q Consensus 533 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 595 (783)
+|..+ ...+.+.|++++|+..|++.++..- .|+ ..+|+.+..+|.+.|++++|.+.+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 4445566777777777777764210 111 346777778888888888888877776641
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 596 -GLDPD-----ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 596 -g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
...++ ...|+.+..+|...|++++|+..|++.++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 23466778888888999999888888764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0067 Score=46.46 Aligned_cols=67 Identities=10% Similarity=-0.031 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHLGP-----RPS-NYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
+...|-.+...+.+.|+++.|+..|++.++..+ .++ ..+++.+..++.+.|++++|+..++++++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 344455666666677777777777766655321 111 3456667777777777777777777776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.09 E-value=0.013 Score=48.24 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh---hhHHH
Q 039931 650 ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCK----QGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN---IQENA 722 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~---~~~~~ 722 (783)
+.++|.+++++..+.| +......|...|.. ..|.++|+++++++.+.+ ++.+...|+..|.. +..+.
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 4455555555555544 22233333333322 234566666666666544 34455555655543 23455
Q ss_pred HHHHHHHhcCCCcchhhhH
Q 039931 723 EFFQETSEKSLFLDFLMGC 741 (783)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~ 741 (783)
+.+.++++++.+.....+|
T Consensus 112 ~~A~~~~~~Aa~~G~~~A~ 130 (133)
T d1klxa_ 112 KQAVKTFEKACRLGSEDAC 130 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHH
Confidence 5555555555554444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.12 E-value=0.27 Score=39.74 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCC
Q 039931 370 GLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK----KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGD 441 (783)
Q Consensus 370 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 441 (783)
.+.++|++++++..+.| +...+..|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555555544 23333333333332 233455555555555443 23333333333333 234
Q ss_pred HHHHHHHHHHHHhC
Q 039931 442 LIGAQSLWNELNRR 455 (783)
Q Consensus 442 ~~~A~~~~~~~~~~ 455 (783)
.++|.+.|+...+.
T Consensus 111 ~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 111 EKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 44444444444444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.045 Score=43.21 Aligned_cols=57 Identities=12% Similarity=-0.037 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPN-V-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
+..++|+.+++++.+. .|+ . ..+..|.-+|.+.|++++|+++++++++++|+ +..+.
T Consensus 52 ~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~-n~qA~ 110 (124)
T d2pqrb1 52 NDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC-cHHHH
Confidence 5788999999998874 353 2 56667777899999999999999999999987 55554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.15 E-value=0.91 Score=35.10 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=75.4
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAI 551 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 551 (783)
.-.|.+++..++..+.... .+..-||.+|--....-+-+...+.++.+-+. -|. ..++++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3456777777777776653 35555666665555555555555555544321 111 1122222222
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039931 552 DAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAG 631 (783)
Q Consensus 552 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 631 (783)
..+-.+ ..+....+..++...+.|+-+.-.++.+.+.+.+ .|++...-.+..+|-+.|...++-+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222111 1233344455566666677777677766665533 5666666667777777777777777777766666
Q ss_pred C
Q 039931 632 I 632 (783)
Q Consensus 632 ~ 632 (783)
+
T Consensus 151 ~ 151 (161)
T d1wy6a1 151 E 151 (161)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.10 E-value=1.4 Score=33.99 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 039931 357 FAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422 (783)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 422 (783)
...+..++...+.|+-++-.++++.+.+.+ +|++.....+..+|-+.|...++-+++.+.-+.|.
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444555555666666666666555433 44555555555666666666666666665555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=2.3 Score=33.10 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 136 MPSESAITILFKSLLRVG---DYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
.+++.+--...-+++++. +.+.++.+|++..+.++......+..|.-+|.+.|++++|++.++.+++..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 455566556666677664 345788888888876543223455667777888888888888888888753
|