Citrus Sinensis ID: 039940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKGR
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
lqsqlflpsapapslnlqtkLEILPAMvagvwsddnsmQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTniasgtsvntkvlidhgaVPIFVKLlaspsddvREQAVWALGNIvahspgcrnlvlHEEALIPLLAQLNEHARLSMLRIGTwtlsnlckgkpqppfdqvrpvLPALAQLIHLDDEEVLRNVCWTlsnlsdgtnDKIQAVIEAGVcgplvellghpspsvlipalrtvgnivtgddfqtqcvinhgAVPYLLALLINNHKksikkescwtvsnitagNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGcikplcdlllcadpEIVTVCLKGLENILKVGEakknrgstigdvnQYARLVEGAEGFKKIEDLkshgnngiREKAVTILETYWLKGR
Flexible Loop (DISEMBL)
lqsqlflpsapapslNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIErslpideviqagIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVgeakknrgstigdvnqyaRLVEGAEGFKKIEdlkshgnngirekaVTILETYWLKGR
Low Complexity Region (SEG)
LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKGR
Disordered region (IsUnstruct)
****************LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL***
Disordered Region (DISOPRED)
***********************LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL***
Disordered Region (DISEMBL)
LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKGR
Disordered Region (DISPRO)
*************SLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	449	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.984	0.840	0.728	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.988	0.834	0.729	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.966	0.812	0.733	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.988	0.842	0.711	0.0
O04294	531	Importin subunit alpha-2	no	no	0.988	0.836	0.629	1e-165
Q76P29	516	Importin subunit alpha-B	yes	no	0.942	0.819	0.567	1e-136
O35345	536	Importin subunit alpha-7	yes	no	0.935	0.783	0.569	1e-127
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.935	0.783	0.569	1e-126
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.935	0.783	0.567	1e-126
O60684	536	Importin subunit alpha-7	yes	no	0.935	0.783	0.567	1e-126

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/446 (72%), Positives = 376/446 (84%), Gaps = 4/446 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q  +P++ A  ++   KLE LPAM+ GV+SDDN++QLEA TQFR+LLSIERS PI+E
Sbjct: 53  LQAQAPVPASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEE 110

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQ+G+VPRFV+FL RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL S 
Sbjct: 111 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 170

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   AL+PLLAQLNEH +LSMLR  TWTLSN C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 230

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQP F+Q RP LPALA+LIH +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LV
Sbjct: 231 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           ELL HPSPSVLIPALRTVGNIVTGDD QTQC+I+H A+P LL+LL  N KKSIKKE+CWT
Sbjct: 291 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 350

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN+ QIQAVI+AG+I PLVNLLQ AEFDIKKEAAWAISNAT  G+ +QIKYLV 
Sbjct: 351 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 410

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           EGCIKPLCDLL+C D  IVTVCL+GLENILKVGE  K   +  GDVN ++++++ AEG +
Sbjct: 411 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 468

Query: 421 KIEDLKSHGNNGIREKAVTILETYWL 446
           KIE+L+SH NN I EKAV ILE YW+
Sbjct: 469 KIENLQSHDNNEIYEKAVKILEAYWM 494

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/447 (72%), Positives = 374/447 (83%), Gaps = 3/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           +Q+    PSA A S++   KL+ L  MVAGVWSDD ++QLE+ TQFR+LLSIERS PI+E
Sbjct: 53  MQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEE 110

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VI AG+VPRFVEFL +EDYP +QFEAAW LTNIASGTS +TKV+IDH AVPIFV+LLASP
Sbjct: 111 VISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASP 170

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   AL+PLL QLNEHA+LSMLR  TWTLSN C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCR 230

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQP FDQV+P LPAL +LIH DDEEVL + CW LS LSDGTNDKIQ VI+AGV   LV
Sbjct: 231 GKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLV 290

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           ELL H SPSVLIPALRTVGNIVTGDD QTQCVIN GA+P L  LL  NHKKSIKKE+CWT
Sbjct: 291 ELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWT 350

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN+ QIQ V++A LI PLV+LLQ+AEFDIKKEAAWAISNAT  G+ +QIKYLV 
Sbjct: 351 ISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVE 410

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+C DP I+TVCL+GLENILKVGEA+KN G T GD+N YA+L++ AEG +
Sbjct: 411 QGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLE 469

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH NN I EKAV ILETYWL+
Sbjct: 470 KIENLQSHDNNEIYEKAVKILETYWLE 496

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/436 (73%), Positives = 366/436 (83%), Gaps = 2/436 (0%)

Query: 12  APSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFV 71
           A S  LQ KLE LPAMV  V SDD+++QLEA TQFR+LLSIERS PI+EVI  G+VPRF+
Sbjct: 68  AHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFI 127

Query: 72  EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWA 131
            FL REDYP+LQFEAAW LTNIASGTS NTKV+++ GAVPIFVKLL+SPS+DVREQAVWA
Sbjct: 128 AFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWA 187

Query: 132 LGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVR 191
           LGN+   SP CR+LVL    L PLL QLNEHA+LSMLR  TWTLSN C+GKPQP F+QV+
Sbjct: 188 LGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVK 247

Query: 192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVL 251
           P L AL +LIH  DEEVL + CW LS LSDGTNDKIQAVIE+GV   LVELL HPS SVL
Sbjct: 248 PALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVL 307

Query: 252 IPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQ 311
           IPALRTVGNIVTGDD QTQCVI+H A+P LL LL NNHKKSIKKE+CWT+SNITAGNR+Q
Sbjct: 308 IPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQ 367

Query: 312 IQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371
           IQAVI+A +I PLV+LLQ AEFDIKKEAAWAISNAT  GT +QIKYLV +GCIKPLCDLL
Sbjct: 368 IQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLL 427

Query: 372 LCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNN 431
           +C DP IVTVCL+GLENILKVGEA+KN G+  GDVN YA++++ AEG +KIE+L+SH N 
Sbjct: 428 VCPDPRIVTVCLEGLENILKVGEAEKNLGA--GDVNSYAQMIDDAEGLEKIENLQSHDNT 485

Query: 432 GIREKAVTILETYWLK 447
            I EKAV +LE+YWL+
Sbjct: 486 EIYEKAVKMLESYWLE 501

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/447 (71%), Positives = 372/447 (83%), Gaps = 3/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q F PS  A S +L  KLE LP ++AGVWSDD+S+QLE  TQFR+LLSIER+ PI+E
Sbjct: 54  LQAQQF-PSTAAVS-HLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEE 111

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQ+G+VPRFVEFL R+DYP+LQFEAAW LTNIASGTS NTKV+ID+G+VPIF++LL+SP
Sbjct: 112 VIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSP 171

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGNI   SP  R+LVL   AL+ LLAQ NE A+LSMLR  TWTLSN C+
Sbjct: 172 SDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCR 231

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQP F+Q +  LP L +LIH +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LV
Sbjct: 232 GKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLV 291

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           ELL H SPSVLIPALRTVGNIVTGDD QTQ +I+H A+P L+ LL  N+KKSIKKE+CWT
Sbjct: 292 ELLLHSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWT 351

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGNR QIQ VI+AG+I PLV LLQ+AEF+IKKEAAWAISNAT  G  +QIK+LV 
Sbjct: 352 ISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVS 411

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+C DP IVTVCL+GLENILK+GEA K+ G+T G VN YA+L++ AEG +
Sbjct: 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEG-VNVYAQLIDEAEGLE 470

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH N  I EKAV ILETYWL+
Sbjct: 471 KIENLQSHDNTEIYEKAVKILETYWLE 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  582 bits (1499), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/454 (62%), Positives = 355/454 (78%), Gaps = 10/454 (2%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEI---------LPAMVAGVWSDDNSMQLEAATQFRRLLS 51
           LQ + F  S    S   QT+ ++         LPAMVAG+WS+D++ QLEA    R+LLS
Sbjct: 45  LQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLS 104

Query: 52  IERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVP 111
           IE++ PI+EV+Q+G+VPR V+FL R+D+P+LQFEAAW LTNIASGTS NT V+I+ GAVP
Sbjct: 105 IEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVP 164

Query: 112 IFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIG 171
           IF++LL+S S+DVREQAVWALGN+   SP CR+LVL   A+ PLL+Q NE+ +LSMLR  
Sbjct: 165 IFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNA 224

Query: 172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231
           TWTLSN C+GKP P F+Q +P LP L +L+   DEEVL + CW LS LSD +NDKIQAVI
Sbjct: 225 TWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVI 284

Query: 232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK 291
           EAGV   L++LLGH SPSVLIPALRT+GNIVTGDD QTQ V++  A+P LL LL NN+KK
Sbjct: 285 EAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKK 344

Query: 292 SIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT 351
           SIKKE+CWT+SNITAGN  QIQAVIDAG+I  LV +LQ AEF++KKEAAW ISNAT  GT
Sbjct: 345 SIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGT 404

Query: 352 QEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYAR 411
            +QIK++V +GCIKPLCDLL C D ++VTVCL+ LENIL VGEA+KN G T G+ N YA+
Sbjct: 405 HDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHT-GEDNLYAQ 463

Query: 412 LVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445
           +++ AEG +KIE+L+SH NN I +KAV ILET+W
Sbjct: 464 MIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/430 (56%), Positives = 321/430 (74%), Gaps = 7/430 (1%)

Query: 17  LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR 76
           +  +LE LP++VA + S++  + L++ T FR+LLSIE+S PI+EVI+ GIVPR V+FL  
Sbjct: 62  INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121

Query: 77  EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIV 136
           +D+P+LQFEAAW LTNIASGT   T+V+I++GA+ +FV LL+SP DDVREQAVWALGNI 
Sbjct: 122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181

Query: 137 AHSPGCRNLVLHEEALIPLLAQLNEHA--RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL 194
             S  CR+LVL   AL PLL+ L   A  ++SM+R  TWTLSN C+GKPQPPF+ VR  L
Sbjct: 182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241

Query: 195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA 254
           P LA+LI+  DEEVL + CW LS LSDG+N++IQ VI+A VC  +VELLGHP+ +V  PA
Sbjct: 242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301

Query: 255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQA 314
           LRT+GNIVTGDD QTQ V++  A+ +LL LL  + K++I+KE+CWT+SNITAG++ QIQ 
Sbjct: 302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360

Query: 315 VIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA 374
           VIDA +I  LV LL +AEF+I+KEAAWAISNAT  GT +QI +LV +GC+KPLCDLL  +
Sbjct: 361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420

Query: 375 DPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIR 434
           DP I+ V L+G+ENIL  G+    + + +  VN Y +++E A+G  KI DL+ H N    
Sbjct: 421 DPRIINVALEGIENILVAGK----KEAQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query: 435 EKAVTILETY 444
           EK   I+ TY
Sbjct: 477 EKVSRIISTY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  456 bits (1172), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/425 (56%), Positives = 298/425 (70%), Gaps = 5/425 (1%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
           I   MV  ++SDD+ +QL    +FR+LLS E S PIDEVI   G+V RFVEFL R +   
Sbjct: 81  ITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCT 140

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           LQFEAAW LTNIASGTS  TK++I+ GAVPIF++LL S  +DV+EQAVWALGNI   S  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSL 200

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           CR+ VL+   L PLL  L +  RL+M R   W LSNLC+GK P P F +V P LP L++L
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +   D ++L + CW LS LSDG N+KIQAVI++GVC  LVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGN 320

Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTGDD QTQ ++N  A+P LL LL ++ K+SI+KE+CWT+SNITAGNR QIQAVIDA +
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
              L+ +LQ AEF  +KEAAWAI+NAT  GT EQI+YLV  GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L GLENIL++GE +  R  +   VN Y  L+E A G  KIE L+SH N  I +KA  +
Sbjct: 440 VALNGLENILRLGEQESKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDL 497

Query: 441 LETYW 445
           +E Y+
Sbjct: 498 IEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  453 bits (1166), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/425 (56%), Positives = 297/425 (69%), Gaps = 5/425 (1%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
           I   MV  ++SDD  +QL    +FR+LLS E S PIDEVI   G+V RFVEFL R +   
Sbjct: 81  ITREMVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCT 140

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           LQFEAAW LTNIASGTS  TK++I+ GAVPIF++LL S  +DV+EQAVWALGNI   S  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSV 200

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           CR+ VL+   L PLL  L +  RL+M R   W LSNLC+GK P P F +V P LP L++L
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +   D ++L + CW LS LSDG N+KIQAVI++GVC  LVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGN 320

Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTGDD QTQ ++N  A+P LL LL ++ K+SI+KE+CWT+SNITAGNR QIQAVIDA +
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
              L+ +LQ AEF  +KEAAWAI+NAT  GT EQI+YLV  GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L GLENIL++GE +  R  +   VN Y  L+E A G  KIE L+SH N  I +KA  +
Sbjct: 440 VALNGLENILRLGEQEGKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDL 497

Query: 441 LETYW 445
           +E Y+
Sbjct: 498 IEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/425 (56%), Positives = 297/425 (69%), Gaps = 5/425 (1%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
           I   MV  ++SDD+ +QL    +FR+LLS E S PIDEVI    +V RFVEFL R +   
Sbjct: 81  ITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCT 140

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           LQFEAAW LTNIASGTS  TK++I+ GAVPIF++LL S  +DV+EQAVWALGNI   S  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSV 200

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           CR+ VL+   L PLL  L +  RL+M R   W LSNLC+GK P P F +V P LP L++L
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +   D ++L + CW LS LSDG N+KIQAVI++GVC  LVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGN 320

Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTGDD QTQ ++N  A+P LL LL ++ K+SI+KE+CWT+SNITAGNR QIQAVIDA +
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
              L+ +LQ AEF  +KEAAWAI+NAT  GT EQI+YLV  GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L GLENIL++GE +  R  +   VN Y  L+E A G  KIE L+SH N  I +KA  +
Sbjct: 440 VALNGLENILRLGEQEGKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDL 497

Query: 441 LETYW 445
           +E Y+
Sbjct: 498 IEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/425 (56%), Positives = 297/425 (69%), Gaps = 5/425 (1%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
           I   MV  ++SDD+ +QL    +FR+LLS E S PIDEVI    +V RFVEFL R +   
Sbjct: 81  ITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCT 140

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           LQFEAAW LTNIASGTS  TK++I+ GAVPIF++LL S  +DV+EQAVWALGNI   S  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSV 200

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           CR+ VL+   L PLL  L +  RL+M R   W LSNLC+GK P P F +V P LP L++L
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +   D ++L + CW LS LSDG N+KIQAVI++GVC  LVELL H    V  PALR VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGN 320

Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTGDD QTQ ++N  A+P LL LL ++ K+SI+KE+CWT+SNITAGNR QIQAVIDA +
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
              L+ +LQ AEF  +KEAAWAI+NAT  GT EQI+YLV  GCIKPLCDLL   D +IV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L GLENIL++GE +  R  +   VN Y  L+E A G  KIE L+SH N  I +KA  +
Sbjct: 440 VALNGLENILRLGEQEGKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDL 497

Query: 441 LETYW 445
           +E Y+
Sbjct: 498 IEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
356564581	530	PREDICTED: importin subunit alpha-1-like	0.991	0.839	0.767	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.993	0.839	0.769	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.993	0.839	0.762	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.988	0.839	0.762	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.991	0.839	0.753	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.979	0.831	0.759	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.977	0.825	0.761	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.977	0.825	0.761	0.0
449464730	530	PREDICTED: importin subunit alpha-1-like	0.988	0.837	0.756	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.991	0.841	0.749	0.0

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/447 (76%), Positives = 391/447 (87%), Gaps = 2/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q   P AP  +  +  KLE LPAMVAGVWSDDNS+QLEA TQFR+LLSIERS PI+E
Sbjct: 53  LQAQQQFP-APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEE 111

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQAG+VPRFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL+SP
Sbjct: 112 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 171

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL + AL+PLLAQLNEHA+LSMLR  TWTLSN C+
Sbjct: 172 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCR 231

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQPPF+QVRP LPAL +L+  +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LV
Sbjct: 232 GKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLV 291

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           +LL HPSPSVLIPALRTVGNIVTGDD QTQC+INHGA+P LL LL NNHKKSIKKE+CWT
Sbjct: 292 QLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWT 351

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN++QIQ VI+AGL+ PLVNLLQ+AEFDIKKEAAWAISNAT  G  EQIKYLV 
Sbjct: 352 ISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVS 411

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+C DP IVTVCL+GLENILKVGEA+K+ G+T GDVN+YA++++ AEG +
Sbjct: 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNEYAQMIDDAEGLE 470

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH NN I EKAV ILETYWL+
Sbjct: 471 KIENLQSHDNNEIYEKAVKILETYWLE 497

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/447 (76%), Positives = 388/447 (86%), Gaps = 1/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q   P+    S  ++ KLE LPAMVAGVWSDDNS QLEA TQFR+LLSIERS PI+E
Sbjct: 53  LQAQQQFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEE 112

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQAG+VPRFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL+SP
Sbjct: 113 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 172

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   ALIPLLAQLNEHA+LSMLR  TWTLSN C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 232

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQPPF+QVR  LPAL +L+  +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LV
Sbjct: 233 GKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           +LL HPSPSVLIPALRTVGNIVTGDD QTQ +INHGA+P LL+LL +NHKKSIKKE+CWT
Sbjct: 293 QLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWT 352

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGNR QIQAVI+AGLI PLVNLLQ+AEFDIKKEAAWAISNAT  GT EQIKYLV 
Sbjct: 353 ISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVS 412

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+C DP IVTVCL+GLENILKVGEA+K+ G+T GDVN YA++++ AEG +
Sbjct: 413 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNLYAQMIDEAEGLE 471

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH NN I EKAV ILETYWL+
Sbjct: 472 KIENLQSHDNNEIYEKAVKILETYWLE 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/447 (76%), Positives = 388/447 (86%), Gaps = 1/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q   P+    +  ++ KLE LPAMVAGVWSDDNS QLEA TQFR+LLSIERS PI+E
Sbjct: 53  LQAQQQFPTPLQAASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEE 112

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQAG+VPRFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL+SP
Sbjct: 113 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 172

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   ALIPLLAQLNEHA+LSMLR  TWTLSN C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 232

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQPPF+QVR  LPAL +L+  +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LV
Sbjct: 233 GKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           +LL HPSPSVLIPALRTVGNIVTGDD QTQ +INHGA+P LL+LL +NHKKSIKKE+CWT
Sbjct: 293 QLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWT 352

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGNR QIQAV++AGLI PLVNLLQ+AEFDIKKEAAWAISNAT  GT EQIKYLV 
Sbjct: 353 ISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVS 412

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+C DP IVTVCL+GLENILKVGEA+K+ G++ GDVN YA++++ AEG +
Sbjct: 413 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNS-GDVNLYAQMIDEAEGLE 471

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH NN I EKAV ILETYWL+
Sbjct: 472 KIENLQSHDNNEIYEKAVKILETYWLE 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/447 (76%), Positives = 390/447 (87%), Gaps = 3/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q F  +A A ++  + KLE LP+MVAGVWSD++S+QLEA TQFR+LLSIERS PI+E
Sbjct: 53  LQAQQFPAAAHASTV--EKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEE 110

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQ+G+VPRFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL SP
Sbjct: 111 VIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSP 170

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   ALIPLLAQLNEHA+LSMLR  TWTLSN C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 230

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQPPFDQV+P LPAL +L+H  DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LV
Sbjct: 231 GKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           ELL HPSPSVLIPALRTVGNIVTGDD QTQ +INHGA+P LL+LL +NHKKSIKKE+CWT
Sbjct: 291 ELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWT 350

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN++QIQAVI+AG+I PLV+LLQ AEFDIKKEAAWAISNAT  GT EQIKYLV 
Sbjct: 351 ISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVS 410

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+C DP IVTVCL+GLENILKVGEA+K  G++ GDVN YA+L++ AEG +
Sbjct: 411 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNS-GDVNYYAQLIDDAEGLE 469

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH NN I EKAV ILETYWL+
Sbjct: 470 KIENLQSHDNNEIYEKAVKILETYWLE 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/447 (75%), Positives = 387/447 (86%), Gaps = 2/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+   LP AP  +  +   LE LPAMVAGVWS+DNS+QLEA TQFR+LLSIERS PI+E
Sbjct: 53  LQAHQQLP-APLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEE 111

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQAG+VPRFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL+SP
Sbjct: 112 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 171

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   AL+PLLAQLNEHA+LSMLR  TWTLSN C+
Sbjct: 172 SDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCR 231

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQPPF+QVRP LPAL +L+  +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  L+
Sbjct: 232 GKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLM 291

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           +LL HPSPSVLIPALRTVGNIVTGDD QTQC+INHGA+P LL LL NNHKKSIKKE+CWT
Sbjct: 292 QLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWT 351

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN++QIQ VI+AGL+ PLVNLLQ AEFDIKKEA+WAISNAT  GT +QIKYLV 
Sbjct: 352 ISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQIKYLVS 411

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GC+KPLCDLL+C DP IVTVCL+GLENILKVGEA+K+ G+T GDVN YA++++ AEG +
Sbjct: 412 QGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNVYAQMIDEAEGLE 470

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH NN I EK V ILETYWL+
Sbjct: 471 KIENLQSHDNNEIYEKVVKILETYWLE 497

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/441 (75%), Positives = 386/441 (87%), Gaps = 1/441 (0%)

Query: 7   LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGI 66
            P+A   S N++ KLE LP+MV+GVWSDD+++QLEA TQFR+LLSIERS PI+EVIQAG+
Sbjct: 58  FPAAVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGV 117

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           VPRFVE L+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL SPSDDVRE
Sbjct: 118 VPRFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVRE 177

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
           QAVWALGN+   SP CR+LVL   ALIPLLAQLNEHA+LSMLR  TWTLSN C+GKPQP 
Sbjct: 178 QAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPL 237

Query: 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246
           F++VRP LPAL +L+H  DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LVELL HP
Sbjct: 238 FEKVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 297

Query: 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306
           SPSVL+PALRTVGNIVTGDD QTQC+IN GA+P LL+LL +NHKKSIKKE+CWT+SNITA
Sbjct: 298 SPSVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITA 357

Query: 307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP 366
           GN++QIQAVI+AGLI PLVNLLQ+AEFDIKKEAAWA+SNAT  GT EQIK+LV +GCIKP
Sbjct: 358 GNKEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKP 417

Query: 367 LCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK 426
           LCDLL+C DP IVTVCL+GLENILKVGEA+KN G++ GDVN YA++++ AEG +KIE+L+
Sbjct: 418 LCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNS-GDVNFYAQMIDDAEGLEKIENLQ 476

Query: 427 SHGNNGIREKAVTILETYWLK 447
           SH NN I EKAV ILETYWL+
Sbjct: 477 SHDNNEIYEKAVKILETYWLE 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/441 (76%), Positives = 384/441 (87%), Gaps = 2/441 (0%)

Query: 7   LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGI 66
           +P++   SL ++ KLE LP+MV GVW+DDN++QLEA TQFR+LLSIERS PI+EVIQ G+
Sbjct: 60  MPASVHSSL-VEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGV 118

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           V RFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLLASPSDDVRE
Sbjct: 119 VSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
           QAVWALGN+   SP CR+LVL   AL+PLLAQLNEHA+LSMLR  TWTLSN C+GKPQPP
Sbjct: 179 QAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 238

Query: 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246
           FDQV+P LPALA+LIH +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LVELL HP
Sbjct: 239 FDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298

Query: 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306
           SPSVLIPALRTVGNIVTGDD QTQ +INH A+P LL LL NN+KKSIKKE+CWT+SNITA
Sbjct: 299 SPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITA 358

Query: 307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP 366
           GN++QIQAVI+A LI PLVNLLQ+AEFDIKKEAAWAISNAT  G+ EQIK+LV +GCIKP
Sbjct: 359 GNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKP 418

Query: 367 LCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK 426
           LCDLL+C DP IVTVCL+GLENILKVGEA KN G+T GDVN YA++++ AEG +KIE+L+
Sbjct: 419 LCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNT-GDVNLYAQMIDEAEGLEKIENLQ 477

Query: 427 SHGNNGIREKAVTILETYWLK 447
           SH N  I EKAV ILETYWL+
Sbjct: 478 SHDNTEIYEKAVKILETYWLE 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/441 (76%), Positives = 384/441 (87%), Gaps = 2/441 (0%)

Query: 7   LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGI 66
           +P++   SL ++ KLE LP+MV GVW+DDN++QLEA TQFR+LLSIERS PI+EVIQ G+
Sbjct: 60  IPASVHSSL-VEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGV 118

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           V RFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLLASPSDDVRE
Sbjct: 119 VSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
           QAVWALGN+   SP CR+LVL   AL+PLLAQLNEHA+LSMLR  TWTLSN C+GKPQPP
Sbjct: 179 QAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 238

Query: 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246
           FDQV+P LPALA+LIH +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LVELL HP
Sbjct: 239 FDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298

Query: 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306
           SPSVLIPALRTVGNIVTGDD QTQ +INH A+P LL LL NN+KKSIKKE+CWT+SNITA
Sbjct: 299 SPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITA 358

Query: 307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP 366
           GN++QIQAVI+A LI PLVNLLQ+AEFDIKKEAAWAISNAT  G+ EQIK+LV +GCIKP
Sbjct: 359 GNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKP 418

Query: 367 LCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK 426
           LCDLL+C DP IVTVCL+GLENILKVGEA KN G+T GDVN YA++++ AEG +KIE+L+
Sbjct: 419 LCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNT-GDVNLYAQMIDEAEGLEKIENLQ 477

Query: 427 SHGNNGIREKAVTILETYWLK 447
           SH N  I EKAV ILETYWL+
Sbjct: 478 SHDNTEIYEKAVKILETYWLE 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464730|ref|XP_004150082.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449501502|ref|XP_004161385.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/447 (75%), Positives = 388/447 (86%), Gaps = 3/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q F PSA   S  ++ KLE LP+MVAGVWSD++S+QLEA TQFR+LLSIERS PI+E
Sbjct: 53  LQAQQF-PSAVHTS-TVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEE 110

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQ+G+VPRFVEFL+RED+P+LQFEAAW LTNIASGTS +TKV+IDHGAVPIFVKLLASP
Sbjct: 111 VIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLASP 170

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   ALIPLL+QLNEHA+LSMLR  TWTLSN C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPTCRDLVLRHGALIPLLSQLNEHAKLSMLRNATWTLSNFCR 230

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQPPFDQV+P LPAL +L+H +DEEVL + CW LS LSDGTNDKIQAVIEAGVCG LV
Sbjct: 231 GKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLV 290

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           +LL HPSPSVLIPALRTVGNIVTGDD QTQ ++N GA+  LL +   NHKKSIKKE+CWT
Sbjct: 291 QLLLHPSPSVLIPALRTVGNIVTGDDIQTQWIVNDGALSCLLGIFTQNHKKSIKKEACWT 350

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN++QIQAVI+A LI PLVNLLQ+AEFDIKKEAAWAISNAT  GT EQIKYLV 
Sbjct: 351 ISNITAGNKEQIQAVIEARLIPPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVS 410

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+C DP IVTVCL+GLENILKVGEA+KN G T GDVN YA++++ AEG +
Sbjct: 411 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG-TNGDVNLYAQMIDDAEGLE 469

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH N+ I EKAV ILETYWL+
Sbjct: 470 KIENLQSHDNHEIYEKAVKILETYWLE 496

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/447 (74%), Positives = 386/447 (86%), Gaps = 2/447 (0%)

Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q F P A   S N++ KLE LP+MVAGVWS+D ++QLE+ TQFR+LLSIERS PI+E
Sbjct: 53  LQAQQF-PPAILSSSNVEKKLENLPSMVAGVWSEDGNLQLESTTQFRKLLSIERSPPIEE 111

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQAG+VPRFVEFL+RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL SP
Sbjct: 112 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSP 171

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   ALIPLLAQLNEHA+LSMLR  TWTLSN C+
Sbjct: 172 SDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 231

Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQPPF+QVRP LPAL +L+H  DEEVL + CW LS LSDGT+DKIQAVIEAGVC  LV
Sbjct: 232 GKPQPPFEQVRPALPALERLVHSTDEEVLTDSCWALSYLSDGTDDKIQAVIEAGVCPRLV 291

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           ELL HPSPSVL+PALRTVGNIVTGDD QTQC+I  GA+P LL+LL +NHKKSIKKE+CWT
Sbjct: 292 ELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSLLTHNHKKSIKKEACWT 351

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN++QIQAVI+ GLI PLVNLLQ+AEFDIKKEAAWA+SNAT  GT EQIK+LV 
Sbjct: 352 ISNITAGNKEQIQAVIENGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVS 411

Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           +GCIKPLCDLL+  DP IVTV L+GLENILKVGEA+KN G++ GD N YA++++ AEG +
Sbjct: 412 QGCIKPLCDLLVSPDPRIVTVSLEGLENILKVGEAEKNLGNS-GDANFYAQMIDDAEGLE 470

Query: 421 KIEDLKSHGNNGIREKAVTILETYWLK 447
           KIE+L+SH NN I EKAV ILETYWL+
Sbjct: 471 KIENLQSHDNNEIYEKAVKILETYWLE 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.979	0.822	0.751	1.2e-175
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.988	0.834	0.729	5.6e-171
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.988	0.825	0.691	2.2e-162
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.937	0.792	0.661	8.8e-150
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.959	0.799	0.653	6.2e-149
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.944	0.816	0.613	3.7e-135
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.964	0.820	0.587	5.2e-129
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.951	0.772	0.581	2.9e-126
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.942	0.819	0.572	2.4e-124
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.939	0.765	0.574	1.3e-121

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
 Identities = 333/443 (75%), Positives = 380/443 (85%)

Query:     6 FLPSAPAP-SLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA 64
             F PS P P S  ++ KLE LPAMV GVWSDD S+QLEA TQFR+LLSIERS PI+EVI A
Sbjct:    61 FAPS-PVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDA 119

Query:    65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDV 124
             G+VPRFVEFL REDYP+LQFEAAW LTNIASGTS NTKV+I+HGAVPIFV+LLAS SDDV
Sbjct:   120 GVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDV 179

Query:   125 REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ 184
             REQAVWALGN+   SP CR+LVL + ALIPLL+QLNEHA+LSMLR  TWTLSN C+GKPQ
Sbjct:   180 REQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQ 239

Query:   185 PPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
             PPFDQVRP LPAL +LIH  DEEVL + CW LS LSDGTNDKIQ+VIEAGV   LVELL 
Sbjct:   240 PPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQ 299

Query:   245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI 304
             H SPSVLIPALR++GNIVTGDD QTQCVI+HGA+  LL+LL +NHKKSIKKE+CWT+SNI
Sbjct:   300 HQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNI 359

Query:   305 TAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCI 364
             TAGNR QIQAV +AGLI PLVNLLQ+AEFDIKKEAAWAISNAT  G+ +QIKY+V +G +
Sbjct:   360 TAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVV 419

Query:   365 KPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED 424
             KPLCDLL+C DP I+TVCL+GLENILKVGEA+K  G+T GDVN YA+L++ AEG +KIE+
Sbjct:   420 KPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNT-GDVNFYAQLIDDAEGLEKIEN 478

Query:   425 LKSHGNNGIREKAVTILETYWLK 447
             L+SH N+ I EKAV ILETYWL+
Sbjct:   479 LQSHDNSEIYEKAVKILETYWLE 501

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1662 (590.1 bits), Expect = 5.6e-171, P = 5.6e-171
 Identities = 326/447 (72%), Positives = 374/447 (83%)

Query:     1 LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
             +Q+    PSA A S++   KL+ L  MVAGVWSDD ++QLE+ TQFR+LLSIERS PI+E
Sbjct:    53 MQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEE 110

Query:    61 VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
             VI AG+VPRFVEFL +EDYP +QFEAAW LTNIASGTS +TKV+IDH AVPIFV+LLASP
Sbjct:   111 VISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASP 170

Query:   121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
             SDDVREQAVWALGN+   SP CR+LVL   AL+PLL QLNEHA+LSMLR  TWTLSN C+
Sbjct:   171 SDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCR 230

Query:   181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
             GKPQP FDQV+P LPAL +LIH DDEEVL + CW LS LSDGTNDKIQ VI+AGV   LV
Sbjct:   231 GKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLV 290

Query:   241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
             ELL H SPSVLIPALRTVGNIVTGDD QTQCVIN GA+P L  LL  NHKKSIKKE+CWT
Sbjct:   291 ELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWT 350

Query:   301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
             +SNITAGN+ QIQ V++A LI PLV+LLQ+AEFDIKKEAAWAISNAT  G+ +QIKYLV 
Sbjct:   351 ISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVE 410

Query:   361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
             +GCIKPLCDLL+C DP I+TVCL+GLENILKVGEA+KN G T GD+N YA+L++ AEG +
Sbjct:   411 QGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLE 469

Query:   421 KIEDLKSHGNNGIREKAVTILETYWLK 447
             KIE+L+SH NN I EKAV ILETYWL+
Sbjct:   470 KIENLQSHDNNEIYEKAVKILETYWLE 496

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1581 (561.6 bits), Expect = 2.2e-162, P = 2.2e-162
 Identities = 310/448 (69%), Positives = 365/448 (81%)

Query:     1 LQSQLFLPSA---PAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLP 57
             LQ QL L +    P  +  ++ +LE +P MV GV+SDD   QLEA TQFR+LLSIERS P
Sbjct:    55 LQQQLPLGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPP 114

Query:    58 IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
             IDEVI+AG++PRFVEFL R D+P+LQFEAAW LTN+ASGTS +T+V+I+ GAVPIFVKLL
Sbjct:   115 IDEVIKAGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLL 174

Query:   118 ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177
              S SDDVREQAVWALGN+   SP CRNLVL+  AL PLLAQLNE+++LSMLR  TWTLSN
Sbjct:   175 TSASDDVREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSN 234

Query:   178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCG 237
              C+GKP  PF+QV+P LP L QLI+L+DEEVL + CW LS LSDG NDKIQAVIEAGVC 
Sbjct:   235 FCRGKPPTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCP 294

Query:   238 PLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKES 297
              LVELLGH SP+VLIPALRTVGNIVTGDD QTQ +I  G +P+L  LL  NHKKSIKKE+
Sbjct:   295 RLVELLGHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEA 354

Query:   298 CWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKY 357
             CWT+SNITAGN+ QI+AV+ AG+I+PLV+LLQ+AEFDIKKEAAWAISNAT  G+ EQI+Y
Sbjct:   355 CWTISNITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQY 414

Query:   358 LVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAE 417
             LV +GCIKPLCDLL+C DP IVTVCL+GLENILKVGEA K  G   G VN YA+++E ++
Sbjct:   415 LVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSG-VNLYAQIIEESD 473

Query:   418 GFKKIEDLKSHGNNGIREKAVTILETYW 445
             G  K+E+L+SH NN I EKAV ILE YW
Sbjct:   474 GLDKVENLQSHDNNEIYEKAVKILERYW 501

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1462 (519.7 bits), Expect = 8.8e-150, P = 8.8e-150
 Identities = 279/422 (66%), Positives = 344/422 (81%)

Query:    24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
             LPAMVAG+WS+D++ QLEA    R+LLSIE++ PI+EV+Q+G+VPR V+FL R+D+P+LQ
Sbjct:    77 LPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQ 136

Query:    84 FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
             FEAAW LTNIASGTS NT V+I+ GAVPIF++LL+S S+DVREQAVWALGN+   SP CR
Sbjct:   137 FEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCR 196

Query:   144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL 203
             +LVL   A+ PLL+Q NE+ +LSMLR  TWTLSN C+GKP P F+Q +P LP L +L+  
Sbjct:   197 DLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQS 256

Query:   204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
              DEEVL + CW LS LSD +NDKIQAVIEAGV   L++LLGH SPSVLIPALRT+GNIVT
Sbjct:   257 MDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVT 316

Query:   264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323
             GDD QTQ V++  A+P LL LL NN+KKSIKKE+CWT+SNITAGN  QIQAVIDAG+I  
Sbjct:   317 GDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQS 376

Query:   324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCL 383
             LV +LQ AEF++KKEAAW ISNAT  GT +QIK++V +GCIKPLCDLL C D ++VTVCL
Sbjct:   377 LVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCL 436

Query:   384 KGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443
             + LENIL VGEA+KN G T G+ N YA++++ AEG +KIE+L+SH NN I +KAV ILET
Sbjct:   437 EALENILVVGEAEKNLGHT-GEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILET 495

Query:   444 YW 445
             +W
Sbjct:   496 FW 497

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
 Identities = 283/433 (65%), Positives = 346/433 (79%)

Query:    14 SLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEF 73
             SL  +T+LE +  M+AGV S+D  +QLEA   FRRLLSIER+ PI+EV+Q+G+VP  V+F
Sbjct:    68 SLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQF 127

Query:    74 LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALG 133
             L R+D+ +LQFEAAW LTNIASGTS NT+V+ID GAVP+FVKLL+S S++VREQAVWALG
Sbjct:   128 LSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALG 187

Query:   134 NIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQ-VRP 192
             N+   SP CR+ VL  EA++ LLAQ +EH++LSMLR  TWTLSN C+GKPQP F+Q  + 
Sbjct:   188 NVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKA 247

Query:   193 VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
              LPAL +L+H  DEEVL +  W LS LSDGTN+KIQ VI+AGV   LV+LL HPSPSVLI
Sbjct:   248 ALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLI 307

Query:   253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
             PALRT+GNIVTGDD QTQ VI+  A+P LL LL N +KKSIKKE+CWT+SNITAGN  QI
Sbjct:   308 PALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQI 367

Query:   313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
             Q V  AG+I PL+NLL+  EF+IKKEA WAISNAT  G  +QIK+LV +GCI+PLCDLL 
Sbjct:   368 QEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLP 427

Query:   373 CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNG 432
             C DP +VTV L+GLENILKVGEA+KN G+T G+ N YA+++E A+G  KIE+L+SH NN 
Sbjct:   428 CPDPRVVTVTLEGLENILKVGEAEKNLGNT-GNDNLYAQMIEDADGLDKIENLQSHDNNE 486

Query:   433 IREKAVTILETYW 445
             I EKAV ILE+YW
Sbjct:   487 IYEKAVKILESYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 263/429 (61%), Positives = 323/429 (75%)

Query:    18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE 77
             ++ LEI   M+ GV+SDD S+QLE  T+FR +LS +RS P D VI++G+VPRFVEFL ++
Sbjct:    67 ESLLEIAN-MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKD 125

Query:    78 DYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137
             D P+LQFEAAW LTNIASG S +TKV+IDHG VP+FV+LLASP DDVREQA+W LGN+  
Sbjct:   126 DNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAG 185

Query:   138 HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPAL 197
              S  CR+ VL+  A IPLL QLN HA LS+LR  TWTLSN  +GKP PPFD V+ VLP L
Sbjct:   186 DSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVL 245

Query:   198 AQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257
              +L++ DDE+VL + CW LSNLSD +N+ IQ+VIEAGV   LVELL H SP VL+PALR 
Sbjct:   246 KRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRC 305

Query:   258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317
             +GNIV+G+  QT CVIN G +P L  LL  NH + I++E+CWT+SNITAG  +QIQ+VID
Sbjct:   306 IGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVID 365

Query:   318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377
             A LI  LVNL Q AEFDIKKEA WAISNA+  G+  QIKYLV + CIK LCD+L+C D  
Sbjct:   366 ANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLR 425

Query:   378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA 437
             I+ V L GLE IL  GE  KN    + DVN Y++++E AEG +KIE+L+ HGNN I EKA
Sbjct:   426 IILVSLGGLEMILIAGEVDKN----LRDVNCYSQMIEDAEGLEKIENLQHHGNNEIYEKA 481

Query:   438 VTILETYWL 446
             V IL+TY L
Sbjct:   482 VKILQTYGL 490

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
 Identities = 264/449 (58%), Positives = 329/449 (73%)

Query:     7 LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIER-SLPIDEVIQAG 65
             LP +P+   +L  KL      ++ +WSD+  + +EA TQ R LL  E  ++ ++EVIQAG
Sbjct:    51 LPHSPSAD-SLDQKL------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAG 103

Query:    66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
             +VPRFVEFL  +D P+LQFEAAW LTNIASGTS NT+V+IDHGAV I V+LL SP D VR
Sbjct:   104 LVPRFVEFLTWDDSPQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVR 163

Query:   126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
             EQ VWALGNI   SP CR++VL   AL  LL QLN  A+LSML    WTLSNLC+GKPQP
Sbjct:   164 EQVVWALGNISGDSPRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQP 223

Query:   186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH 245
             PFDQV   LPALAQLI LDD+E+L   CW L  LSDG+N+KIQAVIEA VC  L+ L  H
Sbjct:   224 PFDQVSAALPALAQLIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIH 283

Query:   246 PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305
              SPSV+ PALRT+GNIVTG+D QTQ +I+  A+P L+ LL  ++ K+I+KE+CWTVSNIT
Sbjct:   284 RSPSVITPALRTIGNIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNIT 343

Query:   306 AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK 365
             AG + QIQAV DA +   LVNLLQ++E D+KKEAAWAI NA   G+ +QI +LV++ CIK
Sbjct:   344 AGCQSQIQAVFDADICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIK 403

Query:   366 PLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIG-------DVNQYARLVEGAEG 418
             PLCDLL C+D ++V VCL+ L+ ILKVGE   +R +  G       +VN +A+L+E AEG
Sbjct:   404 PLCDLLTCSDTQLVMVCLEALKKILKVGEVFSSRHAE-GIYQCPQTNVNPHAQLIEEAEG 462

Query:   419 FKKIEDLKSHGNNGIREKAVTILETYWLK 447
              +KIE L+SH NN I E AV ILETYW++
Sbjct:   463 LEKIEGLQSHENNDIYETAVKILETYWME 491

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 252/433 (58%), Positives = 321/433 (74%)

Query:    17 LQTKLEI-LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL 75
             ++++L + LP MV GV+SD    Q++A T+FR+LLS ER+ PI+ VI+ G+V RFVEFL 
Sbjct:    76 IESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL- 134

Query:    76 REDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNI 135
             R  +  +QFEAAW LTNIASG++  T+V+I+ GAVPIFV+LL+SP  DVREQAVWALGNI
Sbjct:   135 RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNI 194

Query:   136 VAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVL 194
                SP CR+ VL+  AL PLL  +N+  ++SMLR  TWTLSN C+GK PQP ++ + P L
Sbjct:   195 AGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPAL 254

Query:   195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA 254
             P LA+LI++ D+EVL + CW +S LSDG N+KIQAVIEAG+   LVELL H S SV  PA
Sbjct:   255 PVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPA 314

Query:   255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQA 314
             LR+VGNIVTGDD QTQ +IN GA+P LL+LL ++ K  I+KE+CWT+SNITAGN  QIQ+
Sbjct:   315 LRSVGNIVTGDDVQTQVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQS 373

Query:   315 VIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLL 372
             VIDAG+I PLV+LL + +F  +KEA WAISNAT  G Q  +QI+YLV +GCIKPLCDLL 
Sbjct:   374 VIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLA 433

Query:   373 CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNG 432
             C D +I+ V L GLENILKVGE  K  G     VN+YA  +E A G +KI D +++ N  
Sbjct:   434 CPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEE 493

Query:   433 IREKAVTILETYW 445
             I  KA  I+E Y+
Sbjct:   494 IYMKAYNIIEKYF 506

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 246/430 (57%), Positives = 321/430 (74%)

Query:    17 LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR 76
             +  +LE LP++VA + S++  + L++ T FR+LLSIE+S PI+EVI+ GIVPR V+FL  
Sbjct:    62 INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121

Query:    77 EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIV 136
             +D+P+LQFEAAW LTNIASGT   T+V+I++GA+ +FV LL+SP DDVREQAVWALGNI 
Sbjct:   122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181

Query:   137 AHSPGCRNLVLHEEALIPLLAQLNEHA--RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL 194
               S  CR+LVL   AL PLL+ L   A  ++SM+R  TWTLSN C+GKPQPPF+ VR  L
Sbjct:   182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241

Query:   195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA 254
             P LA+LI+  DEEVL + CW LS LSDG+N++IQ VI+A VC  +VELLGHP+ +V  PA
Sbjct:   242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301

Query:   255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQA 314
             LRT+GNIVTGDD QTQ V++  A+ +LL LL  + K++I+KE+CWT+SNITAG++ QIQ 
Sbjct:   302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360

Query:   315 VIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA 374
             VIDA +I  LV LL +AEF+I+KEAAWAISNAT  GT +QI +LV +GC+KPLCDLL  +
Sbjct:   361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420

Query:   375 DPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIR 434
             DP I+ V L+G+ENIL  G  KK   + +  VN Y +++E A+G  KI DL+ H N    
Sbjct:   421 DPRIINVALEGIENILVAG--KKE--AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query:   435 EKAVTILETY 444
             EK   I+ TY
Sbjct:   477 EKVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 246/428 (57%), Positives = 310/428 (72%)

Query:    22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR 81
             E LP MV GV+S+    Q++A T+FR+LLS ER+ PI+EVI+ G+V RFVEFL R  +  
Sbjct:    81 EDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTL 139

Query:    82 LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
             +QFEAAW LTNIASG++  T+V+I+ GAVPIFV+LL SP  DVREQAVWALGNI   SP 
Sbjct:   140 VQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQ 199

Query:   142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
             CR+ VL   AL PLL  L +  +LSMLR  TWTLSN C+GK PQP +  + P LP LA+L
Sbjct:   200 CRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKL 259

Query:   201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
             ++  D+EVL + CW +S LSDG+NDKIQAVIEAG+   LVELL H S SV  PALR+VGN
Sbjct:   260 VYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGN 319

Query:   261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
             IVTGDD QTQ +IN GA+P LL+LL +N K  I+KE+CWT+SNITAGN  QIQ+V+DA +
Sbjct:   320 IVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANI 378

Query:   321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEI 378
             I PL++LL + +   +KEA WAISNAT  G Q  +QI+YLV +GCIKPLCDLL C D +I
Sbjct:   379 IPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKI 438

Query:   379 VTVCLKGLENILKVGEAKKNR-GSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA 437
             + V L GLENILKVG+  K   G     +N+YA  +E   G +KI + +++ N  I  KA
Sbjct:   439 IQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKA 498

Query:   438 VTILETYW 445
               I+E Y+
Sbjct:   499 FNIIEKYF 506

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5694	0.9354	0.7835	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5670	0.9354	0.7835	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5480	0.9265	0.7675	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7293	0.9888	0.8345	no	no
O94374	IMA2_SCHPO	No assigned EC number	0.5258	0.9309	0.7755	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5674	0.9420	0.8197	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7114	0.9888	0.8425	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5670	0.9354	0.7835	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5694	0.9354	0.7835	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7286	0.9844	0.8403	yes	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7339	0.9665	0.8127	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033097001 SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (529 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	449
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-174
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-29
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-27
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-18
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-18
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-09
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-08
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-05
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	9e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-04
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.001

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  499 bits (1286), Expect = e-174
 Identities = 237/433 (54%), Positives = 294/433 (67%), Gaps = 9/433 (2%)

Query: 18  QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE 77
           Q     LP +   ++SDD   QL+A  +FR+LLS E S PI  VI AG+VPRFVEF+   
Sbjct: 67  QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI 126

Query: 78  DYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137
               LQFEAAW LTNIASGT+  TKV++D GAVP+F++LL+S  DDVREQAVWALGNI  
Sbjct: 127 QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG 186

Query: 138 HSPGCRNLVLHEEALIPLLAQLNEHAR-LSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLP 195
            S GCR+ VL   AL PLL  L   A  +SMLR  TWTLSNLC+GK P P +  +   LP
Sbjct: 187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALP 246

Query: 196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPAL 255
            LA+LI+  D EVL + CW +S LSDG N+KIQAV++ G+ G LVELL H S  +  PAL
Sbjct: 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306

Query: 256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV 315
           R+VGNIVTG D QTQ +IN GA+    +LL ++ K++I+KE+CWT+SNITAGN +QIQAV
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAV 365

Query: 316 IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLC 373
           IDA LI PL++LL  AE+ IKKEA WAISNAT  G    + I+YLV +G IKPLCDLL  
Sbjct: 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV 425

Query: 374 ADPEIVTVCLKGLENILKVGEA-KKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNG 432
            D +I+ V L  +ENILKVGE  +   G  I   N YA  VE A G   I  L+   N  
Sbjct: 426 VDNKIIEVALDAIENILKVGEQDRLRYGKNI---NIYAVYVEKAGGMDAIHGLQDSVNRT 482

Query: 433 IREKAVTILETYW 445
           I +KA +I+E ++
Sbjct: 483 IYDKAYSIIEKFF 495

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  109 bits (274), Expect = 7e-29
 Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 59  DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA 118
           + VIQAG +P  V  LL      +Q EAAW L+N+++G + N + +++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178
           S  ++V + A+WAL N+ A     + +VL     +P L  L + +   + +  T  LSNL
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 179 C 179
            
Sbjct: 119 A 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  103 bits (260), Expect = 8e-27
 Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 193 VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
            LPAL  L+   DE V R   W LSNLS G ND IQAV+EAG    LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306
            AL  + N+  G +     V+  G VP L+ LL ++  + I+K +   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 228 QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN 287
           +AVI+AG    LV LL     +V   A   + N+  G++   Q V+  G +P L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-K 59

Query: 288 NHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
           +  + + K + W + N+ AG       V++AG +  LVNLL  +  DI+K A  A+SN
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSN 117

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 272 VINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA 331
           VI  G +P L++LL ++ + ++++E+ W +SN++AGN   IQAV++AG +  LV LL+  
Sbjct: 3   VIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 332 EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389
           + ++ K A WA+ N   AG ++    ++  G +  L +LL  ++ +I       L N+
Sbjct: 62  DEEVVKAALWALRNLA-AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 20  KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY 79
           +   LPA+V+ + S D ++Q EAA     L S   +  I  V++AG +P  V+ L  ED 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED- 62

Query: 80  PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137
             +   A W L N+A+G   N  ++++ G VP  V LL S ++D+++ A  AL N+ +
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 14/133 (10%)

Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
           +AVI AG +  LV+LL  ++ ++++EAAWA+SN + AG  + I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLK 59

Query: 373 CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNG 432
             D E+V   L  L N+    E  K              +V  A G  K+ +L    N  
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKL-------------IVLEAGGVPKLVNLLDSSNED 106

Query: 433 IREKAVTILETYW 445
           I++ A   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP--VLPALAQLIHLDDEEVL 209
            +P L  L   +  ++ R   W LSNL  G        V     LPAL QL+  +DEEV+
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVV 66

Query: 210 RNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
           +   W L NL+ G  D    V+EAG    LV LL   +  +   A   + N+ +
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 19/38 (50%), Positives = 29/38 (76%)

Query: 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137
           N + +I+ GAVP  V+LL+SP ++V+E+A WAL N+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 51.3 bits (124), Expect = 5e-09
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137
           N + ++D G +P  V+LL S  ++V ++A WAL N+ +
Sbjct: 4   NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 308 NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
           + +  QAVI+AG + PLV LL   + ++++EAAWA+SN
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 80  PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNI 135
             ++  AA  L  +A G     +  +    +P  + LL    D+VRE A WALG I
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 308 NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
           + +  QAV+DAG +  LV LL+  + ++ KEAAWA+SN
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.5 bits (109), Expect = 6e-07
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 54 RSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95
                 V+ AG +P  VE LL+ +   +  EAAW L+N++S
Sbjct: 1  DDENKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 223 TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
           + +  QAVIEAG   PLV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 57 PIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95
              VI+AG VP  V+ LL      +Q EAAW L+N+A+
Sbjct: 4  NKQAVIEAGAVPPLVQ-LLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306
             Q VI  GAVP L+ LL ++  + +++E+ W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           +   +E LL +  P ++  AA  L  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 127 QAVWALGNI 135
            A  ALG +
Sbjct: 50  AAAEALGKL 58

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 223 TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262
            ++  QAV++AG    LVELL      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 193 VLPALAQLIHLDDEEVLRNVCWTLSNLSD 221
            +P L QL+   DEEV     W LSNL+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 351 TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389
           + E  + ++  G + PL  LL   D E+       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 351 TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389
             E  + +V  G +  L +LL   D E+V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 67/365 (18%), Positives = 109/365 (29%), Gaps = 90/365 (24%)

Query: 33  SDDNSMQLEAATQF------RRLLSIERSLPIDEVIQAG--IVPRFVEFLLREDYPRLQF 84
           SDD  +   AA             +++    +D++I          +  LL ++   ++ 
Sbjct: 2   SDDADVVRSAAVLVLLSYGSEAAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRL 61

Query: 85  EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144
            AA  L  + S             AVP+  +LL+     VR+ A  ALG +         
Sbjct: 62  SAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAADALGELG-------- 102

Query: 145 LVLHEEALIPLLAQLNEH-------------ARLSMLRIGTWTLSNLCKGKPQ------- 184
                EA+ PL+  L                 +L   R     L  L             
Sbjct: 103 ---DPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALD 159

Query: 185 PPFDQVR-PVLPALAQLIHLDDEEVLRN---------VCWTLSNLSDGTNDKIQAVIEAG 234
                VR     AL +L   +   +L                S L    ++ ++A     
Sbjct: 160 AALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADL-- 217

Query: 235 VCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIK 294
               LV+ L   S  V   AL  +G I   +           AV  L   L +       
Sbjct: 218 ----LVKALSDESLEVRKAALLALGEIGDEE-----------AVDALAKALEDED----- 257

Query: 295 KESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI-SNATKAGTQE 353
                    +       + A+  A   +PL+ LL D    ++ EAA A+     +     
Sbjct: 258 -------VILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAVAA 310

Query: 354 QIKYL 358
            +  L
Sbjct: 311 LLLAL 315

Length = 335

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 193 VLPALAQLIHLDDEEVLRNVCWTLSNLSD 221
            LPAL +L+  +DEEV++   W LSNLS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 31/111 (27%), Positives = 55/111 (49%)

Query: 216 LSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINH 275
           L NL   T+    A +EAG    LV+LL   +      A   +  ++   +     V++ 
Sbjct: 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDA 230

Query: 276 GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVN 326
           GAV  LL LL   ++ S++ E+   +  +++ +++  QA+ DAG I  L+N
Sbjct: 231 GAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 36.6 bits (86), Expect = 9e-04
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306
           DD   Q V++ G +P L+ LL  +  + + KE+ W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 110 VPIFVKLLASPSDDVREQAVWALGNIVAH 138
           +P+ ++LL  P  +VRE A  ALG +   
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALAEV 30

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	449
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.87
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.82
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.81
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.81
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.81
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.8
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.79
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.78
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.76
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.73
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.71
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.71
PRK09687	280	putative lyase; Provisional	99.7
PRK09687	280	putative lyase; Provisional	99.69
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.67
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.66
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.66
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.65
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.62
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.58
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.53
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.53
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.52
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.51
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.49
PTZ00429	746	beta-adaptin; Provisional	99.48
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.46
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.44
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.38
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.37
PTZ00429	746	beta-adaptin; Provisional	99.37
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.33
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.25
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.23
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.23
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.22
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.2
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.19
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.19
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.16
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.16
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.11
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.09
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.09
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.07
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.06
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.06
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.03
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.01
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.97
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.95
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.92
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.89
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.89
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.87
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.82
COG5369	743	Uncharacterized conserved protein [Function unknow	98.82
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.8
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.8
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.79
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.76
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.76
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.72
COG5369	743	Uncharacterized conserved protein [Function unknow	98.7
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.7
PF05536	543	Neurochondrin: Neurochondrin	98.69
TIGR02270	410	conserved hypothetical protein. Members are found	98.68
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.66
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.66
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.65
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.58
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.57
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.54
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.52
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.48
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.47
TIGR02270	410	conserved hypothetical protein. Members are found	98.45
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.44
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.43
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.41
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.39
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.38
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.38
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.38
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.36
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.33
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.32
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.31
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.29
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.29
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.29
PF05536	543	Neurochondrin: Neurochondrin	98.26
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.26
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.25
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.25
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.22
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.22
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.21
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.18
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.15
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.15
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.12
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.11
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.07
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.07
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.05
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.03
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.02
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.97
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.96
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.93
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.91
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.9
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.81
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.81
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.81
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.78
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.77
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.76
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.76
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.76
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.73
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.73
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.7
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.69
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.65
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.65
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.64
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.59
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.56
KOG0567	289	consensus HEAT repeat-containing protein [General	97.55
KOG2025	892	consensus Chromosome condensation complex Condensi	97.52
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.51
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.48
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.48
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.46
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.45
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.42
PRK14707	2710	hypothetical protein; Provisional	97.41
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.37
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.37
KOG0567	289	consensus HEAT repeat-containing protein [General	97.36
KOG3036	293	consensus Protein involved in cell differentiation	97.33
PF05004	309	IFRD: Interferon-related developmental regulator (	97.3
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.3
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.27
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.25
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.24
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.22
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	97.21
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.19
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.18
PRK14707	2710	hypothetical protein; Provisional	97.14
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	97.13
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.05
PF05004	309	IFRD: Interferon-related developmental regulator (	97.03
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.01
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.98
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.96
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.95
KOG2956	516	consensus CLIP-associating protein [General functi	96.88
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.85
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.82
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.81
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.79
KOG2956	516	consensus CLIP-associating protein [General functi	96.77
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.76
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.76
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.74
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.74
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.66
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.65
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.59
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.53
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.5
KOG2025	892	consensus Chromosome condensation complex Condensi	96.5
KOG3036	293	consensus Protein involved in cell differentiation	96.35
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.34
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.32
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.32
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.28
KOG1243	690	consensus Protein kinase [General function predict	96.28
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.28
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	96.19
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.17
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.15
KOG1243	690	consensus Protein kinase [General function predict	96.09
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.09
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.08
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.08
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.07
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.05
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	96.03
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.98
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.92
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.9
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.87
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.76
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.75
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.7
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.69
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.68
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.52
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.49
KOG2933	334	consensus Uncharacterized conserved protein [Funct	95.49
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.32
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	95.27
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.23
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.18
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.92
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.89
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.83
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.8
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.72
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.71
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.69
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.66
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.65
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	94.61
KOG0413	1529	consensus Uncharacterized conserved protein relate	94.61
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.6
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.59
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	94.59
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	94.58
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.46
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.42
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.3
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.13
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.03
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	93.99
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	93.74
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.62
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.53
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.34
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	93.33
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.29
cd03561	133	VHS VHS domain family; The VHS domain is present i	93.25
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.22
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	93.1
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	93.07
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	93.04
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.98
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	92.88
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.72
KOG0413	1529	consensus Uncharacterized conserved protein relate	92.71
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.48
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	92.38
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.34
KOG2005	878	consensus 26S proteasome regulatory complex, subun	92.3
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.3
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.0
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	91.97
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.78
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.32
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.31
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.28
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.25
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.78
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	90.64
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.52
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	90.06
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.84
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	89.71
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.67
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	89.47
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	89.37
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.21
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	89.01
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	88.97
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	88.86
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	88.76
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	88.73
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	88.25
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.88
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	87.83
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	87.53
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	87.31
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	86.97
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	86.89
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	86.47
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	86.44
KOG2199	462	consensus Signal transducing adaptor protein STAM/	86.33
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.32
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	86.13
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	85.65
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	85.63
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.53
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	84.32
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	83.87
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	83.8
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	82.09
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	82.06
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	81.63
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	81.59
PF09758	149	FPL: Uncharacterised conserved protein; InterPro:	81.58
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	81.51
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	81.28
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	80.9
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	80.79
KOG2085	457	consensus Serine/threonine protein phosphatase 2A,	80.72
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	80.55

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-62  Score=438.35  Aligned_cols=423  Identities=65%  Similarity=1.003  Sum_probs=402.3

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ....+..++.+.|+++..+..+...++++.+....+++..++..|++|.+++.|...+.+.++..|+|+|.|+++++++.
T Consensus        65 ~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~  144 (514)
T KOG0166|consen   65 ASNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ  144 (514)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence            34478999999999999999999999999998888999999999999999999987766899999999999999999999


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      ...+++.|++|.|+.++.+++..++++|.|+|+|++++++.+|+.+.+.|++.+|+.++..+....+.++++|+|+|||+
T Consensus       145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999655555899999999999999


Q ss_pred             CC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          181 GK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       181 ~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      +. |.+.+.....++|.|..++++.|+++...++|++++++.+..+.++.+++.|+++.|+.+|.+.++.++..|+++++
T Consensus       225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG  304 (514)
T KOG0166|consen  225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG  304 (514)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence            99 88888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA  339 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  339 (449)
                      |++.+++.+.+.+++.|+++.|..++...+...++++|||+++|++.|+.+.++.+++.|++|.|+++++..+.++|++|
T Consensus       305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA  384 (514)
T KOG0166|consen  305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA  384 (514)
T ss_pred             ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence            99999999999999999999999999955367799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940          340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF  419 (449)
Q Consensus       340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (449)
                      +|+++|++.+|++++..+|++.|+++.++++|.-.|.++...++.+++++++.++.....+    . +.+...++++||+
T Consensus       385 awaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggl  459 (514)
T KOG0166|consen  385 AWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGL  459 (514)
T ss_pred             HHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccCh
Confidence            9999999999999999999999999999999999999999999999999999999876421    1 7899999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          420 KKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       420 ~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      ++++.||+|+|.++|++|-+||++||+.|
T Consensus       460 dkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  460 DKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             hHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999975

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.7e-62  Score=402.85  Aligned_cols=425  Identities=55%  Similarity=0.860  Sum_probs=399.9

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ...+|.+.+.|.|+|.+.+..|...++++++.+..++++.+++.|++|.++++++.......+..|+|+|.|+++++...
T Consensus        70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q  149 (526)
T COG5064          70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ  149 (526)
T ss_pred             hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence            45679999999999999999999999999999989999999999999999999966554788999999999999999999


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc-cHHHHHHHHHHHHHhh
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA-RLSMLRIGTWTLSNLC  179 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~l~~l~  179 (449)
                      ...+++.|++|.++++|.+.+.++++++.|+|+|++++++.+|+.++++|++.+++.++..+. +..+.+++.|+|+|||
T Consensus       150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999995433 4689999999999999


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          180 KGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       180 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ++. |.+........+|.|.+++.+.|+++...++|++++++.+..+..+.+++.|....|+.+|.+++..++..|++.+
T Consensus       230 RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v  309 (526)
T COG5064         230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV  309 (526)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence            998 7777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE  338 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  338 (449)
                      +|+..+++.+.+.+++.|+++.+..+|+++ ...+|++|||+++|++.++.+.++.+++.+++|+|+++|...+..++++
T Consensus       310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE  388 (526)
T COG5064         310 GNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE  388 (526)
T ss_pred             cCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 7799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940          339 AAWAISNATKAG--TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA  416 (449)
Q Consensus       339 a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ||||++|...+|  .++..++++++|++++|+++|.-.+.++.+.+++++.++++.++.+.....  ...|.|...+++.
T Consensus       389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~A  466 (526)
T COG5064         389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKA  466 (526)
T ss_pred             HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhc
Confidence            999999999986  578999999999999999999999999999999999999999988776543  2466788999999


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          417 EGFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      ||++.+..+|++.|.+++.+|-.||++||.+|
T Consensus       467 ggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee  498 (526)
T COG5064         467 GGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE  498 (526)
T ss_pred             ccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999999999876

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-47  Score=339.21  Aligned_cols=380  Identities=25%  Similarity=0.392  Sum_probs=341.9

Q ss_pred             CCchhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 039940           13 PSLNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT   91 (449)
Q Consensus        13 ~~~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~   91 (449)
                      |+.......|.+|.+++.|.. +++.++++|+|+|.+++++. .+..+.+++.|.+|.++.++.+++ .+++++|+|+|+
T Consensus       100 ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALg  177 (514)
T KOG0166|consen  100 PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALG  177 (514)
T ss_pred             CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHh
Confidence            667777778999999999975 56999999999999999988 788889999999999999999999 899999999999


Q ss_pred             HhcCCChhhhHHHHhCCChHHHHHhhCCCCh-HHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940           92 NIASGTSVNTKVLIDHGAVPIFVKLLASPSD-DVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRI  170 (449)
Q Consensus        92 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~  170 (449)
                      |++.+++.+|+.+++.|+++.|+.++...+. ....++.|+|.|+|++.......-.-..+++.|..++ ++.|+++...
T Consensus       178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~D  256 (514)
T KOG0166|consen  178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTD  256 (514)
T ss_pred             ccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHH
Confidence            9999999999999999999999999988665 7888999999999987632223333456788888888 8999999999


Q ss_pred             HHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCC
Q 039940          171 GTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSP  248 (449)
Q Consensus       171 a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~  248 (449)
                      ++|++++|+.+.+.. ......|++|.++.+|.+.+..++..++++++|++.+++.+.+.+++.|+++.|..++. ++..
T Consensus       257 a~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~  336 (514)
T KOG0166|consen  257 ACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKE  336 (514)
T ss_pred             HHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcch
Confidence            999999999887443 45556899999999999999999999999999999999999999999999999999999 4566


Q ss_pred             cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHH
Q 039940          249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNL  327 (449)
Q Consensus       249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~l  327 (449)
                      .++++|||+++|++.++.++++.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++.+.++++.|++++|+++
T Consensus       337 ~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdl  415 (514)
T KOG0166|consen  337 SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDL  415 (514)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhc
Confidence            6999999999999999999999999999999999999999 99999999999999997 789999999999999999999


Q ss_pred             hhcCchhHHHHHHHHHHHhhccCCH-------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          328 LQDAEFDIKKEAAWAISNATKAGTQ-------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       328 l~~~~~~v~~~a~~aL~~l~~~~~~-------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      |...|.++...++.++.++...+..       .....+-+.|+++.+..+-.+++.++...|..++.+++..+++.
T Consensus       416 L~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~  491 (514)
T KOG0166|consen  416 LTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDE  491 (514)
T ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccc
Confidence            9988999999999999999987532       22345557899999999999999999999999999999876443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.3e-46  Score=307.94  Aligned_cols=380  Identities=24%  Similarity=0.350  Sum_probs=335.1

Q ss_pred             CCCCCchhhHhhhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 039940           10 APAPSLNLQTKLEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW   88 (449)
Q Consensus        10 ~~~~~~~~~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~   88 (449)
                      ...||.......|.+|.+++++. .+..-.+++|+|+|.+++++. ....+.+++.|.+|.++++|.+++ .+++++++|
T Consensus       102 E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavW  179 (526)
T COG5064         102 ETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVW  179 (526)
T ss_pred             ccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHH
Confidence            34567788899999999999994 577888999999999999988 677888899999999999999999 899999999


Q ss_pred             HHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC--hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHH
Q 039940           89 VLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS--DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLS  166 (449)
Q Consensus        89 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~  166 (449)
                      +|+|++.+++.+|+.+.++|++..++.++.+.-  ..+..++.|+|+|+|++.....+.-.-...++.|.+++ .+.|++
T Consensus       180 ALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~e  258 (526)
T COG5064         180 ALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPE  258 (526)
T ss_pred             HhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHH
Confidence            999999999999999999999999999997644  47888999999999976522222222234677777777 889999


Q ss_pred             HHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC
Q 039940          167 MLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH  245 (449)
Q Consensus       167 ~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~  245 (449)
                      +...|+|++++++...... ......|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.+
T Consensus       259 vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~  338 (526)
T COG5064         259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS  338 (526)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC
Confidence            9999999999999987333 333447888899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChH
Q 039940          246 PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA---GNRKQIQAVIDAGLIV  322 (449)
Q Consensus       246 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~  322 (449)
                      +...++++|||+++|+..++.++++.+++.+++|+|+.+|++. +..++++|||+++|...   +-|+.+.++++.|+++
T Consensus       339 ~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ik  417 (526)
T COG5064         339 PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK  417 (526)
T ss_pred             hhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchh
Confidence            9999999999999999999999999999999999999999999 99999999999999997   3578899999999999


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhccCCHH----------HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          323 PLVNLLQDAEFDIKKEAAWAISNATKAGTQE----------QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       323 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~----------~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      +|+++|...+..+-+.++.++.|+...|..+          ...++-+.|+++.+..+.++.+.++..+|..++..+|..
T Consensus       418 pLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge  497 (526)
T COG5064         418 PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE  497 (526)
T ss_pred             HHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence            9999999988889999999999999876432          223344589999999999999999999999999999844


Q ss_pred             h
Q 039940          393 G  393 (449)
Q Consensus       393 ~  393 (449)
                      .
T Consensus       498 e  498 (526)
T COG5064         498 E  498 (526)
T ss_pred             c
Confidence            3

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=333.68  Aligned_cols=409  Identities=21%  Similarity=0.225  Sum_probs=344.3

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~   97 (449)
                      ..+.|++|.++++|+++++..+..|+++|.+++... .+.+..+++.|++|.|+++|+++++..+++.|+++|++++.++
T Consensus       185 IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s  263 (2102)
T PLN03200        185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS  263 (2102)
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999998887654 5678889999999999999987654799999999999999999


Q ss_pred             hhhhHHHHhCCChHHHHHhhCCCC---------hHHHHHHHHHHHHHhcCCCc-----------hhh---hHhhcCCHHH
Q 039940           98 SVNTKVLIDHGAVPIFVKLLASPS---------DDVREQAVWALGNIVAHSPG-----------CRN---LVLHEEALIP  154 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~~l~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~---~~~~~~~i~~  154 (449)
                      ++.+..+++.|+++.|++++.+++         ..++++|+|+|+|+|++.+.           .++   .....|++.+
T Consensus       264 ~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALay  343 (2102)
T PLN03200        264 KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAY  343 (2102)
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHH
Confidence            999999999999999999998655         34699999999999986433           111   1133466777


Q ss_pred             HHHHHcccccHHHH----HHHHHHHHHhhcCC-CCCChh-------------------hhhchHHHHHHhhcCCCHHHHH
Q 039940          155 LLAQLNEHARLSML----RIGTWTLSNLCKGK-PQPPFD-------------------QVRPVLPALAQLIHLDDEEVLR  210 (449)
Q Consensus       155 l~~~l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~-------------------~~~~~l~~l~~ll~~~~~~~~~  210 (449)
                      ++..+ +..+...+    ..++|+|.+++++. +.....                   ...++++.|+.++...+.+++.
T Consensus       344 ll~l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~  422 (2102)
T PLN03200        344 ALMVF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE  422 (2102)
T ss_pred             HHHhc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence            77766 33333333    25678999999876 222111                   1245677888899888999999


Q ss_pred             HHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc
Q 039940          211 NVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK  290 (449)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  290 (449)
                      .++++|.+++.++.+..+.+.+.|+++.|+.+|.+++..++..|++++++++.++++.+..+.+.|+++.|+++|.++ +
T Consensus       423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~  501 (2102)
T PLN03200        423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-S  501 (2102)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-C
Confidence            999999999999989999999999999999999999999999999999999999888899999999999999999999 9


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940          291 KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL  370 (449)
Q Consensus       291 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l  370 (449)
                      ..++++|+|+|+|++.+++.....+.+.|+++.|+++|+++++++++.|+++|.+++..++.+.         ++.++.+
T Consensus       502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~L  572 (2102)
T PLN03200        502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTAL  572 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHH
Confidence            9999999999999998765555445578999999999999999999999999999998766553         3667788


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          371 LLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       371 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      +.++++.++..++.++.+++...+....          ..+.....||++.|.+|+.++++++++.|..+|.+||...
T Consensus       573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~----------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        573 LLGDLPESKVHVLDVLGHVLSVASLEDL----------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             hcCCChhHHHHHHHHHHHHHhhcchhHH----------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999887665321          2333446799999999999999999999999999999753

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=3.4e-39  Score=330.78  Aligned_cols=418  Identities=17%  Similarity=0.202  Sum_probs=369.9

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      .+.++++.|+.++...+.++|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ ..++..|++.+++++.+++
T Consensus       401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nd  478 (2102)
T PLN03200        401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVD  478 (2102)
T ss_pred             HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCH
Confidence            34577889999999999999999999999998765 778899999999999999999998 8999999999999999888


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      +++..+++.|++|.|+++|.+++.++++.|+|+|+|++.++++.+..+.+.|+++++++++ ++.+.+.++.++|+|.++
T Consensus       479 enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nL  557 (2102)
T PLN03200        479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKL  557 (2102)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998878888887889999999999 677899999999999999


Q ss_pred             hcCCCCC---------------------------------C--h---hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940          179 CKGKPQP---------------------------------P--F---DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       179 ~~~~~~~---------------------------------~--~---~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  220 (449)
                      +......                                 .  .   ....++++.|..+++++++.+++.++|+|.+++
T Consensus       558 i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~  637 (2102)
T PLN03200        558 VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF  637 (2102)
T ss_pred             HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            7533110                                 0  0   012478999999999999999999999999999


Q ss_pred             cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHH
Q 039940          221 DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCVINHGAVPYLLALLINNHKKSIKKESCW  299 (449)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  299 (449)
                      .++.+..+.++..|++++++.+|.+.+.+++..++|+|++++.+.. .++..+++.|++++|+++|+++ +.+++..|+.
T Consensus       638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~  716 (2102)
T PLN03200        638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVC  716 (2102)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHH
Confidence            9999888889999999999999999999999999999999987543 4455678999999999999999 9999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHH--HHHHHHcCChHHHHhhccCCCHH
Q 039940          300 TVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQ--IKYLVREGCIKPLCDLLLCADPE  377 (449)
Q Consensus       300 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~~~~L~~ll~~~~~~  377 (449)
                      +|.|++... +....+.+.|+++.|++++.+++++.|+.|+++|.+++.+++.++  ..++...|.+.+|+++|+..|.+
T Consensus       717 ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~  795 (2102)
T PLN03200        717 ALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD  795 (2102)
T ss_pred             HHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence            999998865 456677888999999999999999999999999999999876554  36667789999999999999888


Q ss_pred             HHHH--HHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 039940          378 IVTV--CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLK  447 (449)
Q Consensus       378 ~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~  447 (449)
                      ....  ++++|..+.+......      ...++|..+++..++++.|.....+.+|.++++|+.+++++..+
T Consensus       796 ~~~~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~  861 (2102)
T PLN03200        796 SSATSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD  861 (2102)
T ss_pred             hhhHHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence            7665  9999999998665544      34678999999999999997777999999999999999997653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-31  Score=225.14  Aligned_cols=366  Identities=19%  Similarity=0.262  Sum_probs=320.9

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      .+++++..++..+.++.-++|..+..++.+++..  ......+...|++..+.++-++.+ ..+|..+..+|.++.. ..
T Consensus       123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~  198 (550)
T KOG4224|consen  123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR  198 (550)
T ss_pred             EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence            4567888999999999999999999999999876  577777889999999999777777 8999999999999997 78


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcC--CHHHHHHHHcccccHHHHHHHHHHHH
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEE--ALIPLLAQLNEHARLSMLRIGTWTLS  176 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~l~  176 (449)
                      ++|+.++..|++|.|+.++.+.+..+|+.|..+++|++-+. ..|+.+.+.+  .++.++.++ +++++.++..|..+|.
T Consensus       199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr  276 (550)
T KOG4224|consen  199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR  276 (550)
T ss_pred             hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence            99999999999999999999999999999999999997654 4566777777  899999999 8899999999999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC-cchhhHH
Q 039940          177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP-SVLIPAL  255 (449)
Q Consensus       177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~v~~~a~  255 (449)
                      +++.+..-.......|.+|.++++++++..........|+.|++.++-+ .-.+.+.|++.+|+.+|...+. +++..|.
T Consensus       277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAv  355 (550)
T KOG4224|consen  277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAV  355 (550)
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHH
Confidence            9999864444555589999999999999888888899999999976543 3458889999999999998654 5999999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH
Q 039940          256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI  335 (449)
Q Consensus       256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v  335 (449)
                      .+|+|++..+......+.+.|.++.+..++.++ .-.++.+...+++.++.. +.....+.+.|+++.|+.++.+.+.++
T Consensus       356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev  433 (550)
T KOG4224|consen  356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV  433 (550)
T ss_pred             HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence            999999998888888999999999999999999 889999999999999764 345668889999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCHHHHHHHHH------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          336 KKEAAWAISNATKAGTQEQIKYLVR------EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~~~~~l~~------~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +-+|+.+|.|+++  +.++..++++      .|.-..|.+++.+.+-.++..+.|.+..+.+..+.
T Consensus       434 ~gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~  497 (550)
T KOG4224|consen  434 RGNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL  497 (550)
T ss_pred             cccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999998  5677777775      35566788889988888999999999999987654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-32  Score=226.26  Aligned_cols=367  Identities=21%  Similarity=0.228  Sum_probs=321.1

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .+..+++..++++.++.++..|..++.+++-.  .++.-.++.-+++..|+.-+..+. .++|..++.|+.|++. .+++
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~n  159 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSN  159 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccc
Confidence            45677888899999999999999999999865  455556667777887777666666 5999999999999999 5788


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      +..+...|++..+..+-++.+..+|.++..+|.|+.. +.+.|+.+...|+++.++.++ ++.|..++.+++.+++++.-
T Consensus       160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaV  237 (550)
T KOG4224|consen  160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAV  237 (550)
T ss_pred             hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhh
Confidence            9999999999999998888999999999999999964 446778888999999999999 89999999999999999998


Q ss_pred             CCCCCChhhhh--chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          181 GKPQPPFDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       181 ~~~~~~~~~~~--~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      +...++.....  ..+|.|+.++++++++++-.+..+|.+++.... +...+++.|.+|.++.+++++..........|+
T Consensus       238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI  316 (550)
T KOG4224|consen  238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACI  316 (550)
T ss_pred             hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence            87555554444  499999999999999999999999999997665 445589999999999999998888888899999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE  338 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  338 (449)
                      .|++-+ +-..-.+.+.|++.+|+.+|..+.+.+++-.|..+|.|++..+.+....+.+.|.+|.++.++.++...++..
T Consensus       317 rnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse  395 (550)
T KOG4224|consen  317 RNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE  395 (550)
T ss_pred             hhcccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence            999876 3334457789999999999999855669999999999999988888889999999999999999999999999


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940          339 AAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       339 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  397 (449)
                      ...++..++..  .....+|.+.|.++.|+.+..+.+.+++-.+..+|.|+....++..
T Consensus       396 isac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Ya  452 (550)
T KOG4224|consen  396 ISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYA  452 (550)
T ss_pred             HHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHH
Confidence            99999999884  4678899999999999999999999999999999999998776643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=3.3e-26  Score=217.87  Aligned_cols=389  Identities=19%  Similarity=0.213  Sum_probs=319.6

Q ss_pred             hhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940           16 NLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        16 ~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~   95 (449)
                      ....+.++++.|++.|.+++.++...++..|.+++..  .++...+.+.|+++.|.+++.+++ .+++..++++|.|++.
T Consensus       284 ~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf  360 (708)
T PF05804_consen  284 LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF  360 (708)
T ss_pred             HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc
Confidence            3455679999999999999999999999999999765  578999999999999999999998 8999999999999999


Q ss_pred             CChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940           96 GTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL  175 (449)
Q Consensus        96 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l  175 (449)
                       +++.|..+++.|++|.|+.+|.++  ..+..++.+|++++.+. ..+..+...++++.+++++...+++.+...+++.+
T Consensus       361 -d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~  436 (708)
T PF05804_consen  361 -DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL  436 (708)
T ss_pred             -CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence             788999999999999999999854  46677999999998765 57888888899999999987777888888899999


Q ss_pred             HHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhH
Q 039940          176 SNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPA  254 (449)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a  254 (449)
                      .|++.+..+.......++++.|+.........+   .+..+.|++.+++.... .+. +++..|+.++..+ +++...++
T Consensus       437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~  511 (708)
T PF05804_consen  437 INLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVEC  511 (708)
T ss_pred             HHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHH
Confidence            999999866666666778888887655433222   34688899988754333 332 5677777777664 66789999


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--
Q 039940          255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--  331 (449)
Q Consensus       255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--  331 (449)
                      +++|+|+...+....+.+.+.+++|.+..+|..+. ++++.-+++..++.++. ++.....+.+.|+++.|++++...  
T Consensus       512 LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqe  590 (708)
T PF05804_consen  512 LGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQE  590 (708)
T ss_pred             HHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCc
Confidence            99999998876666666667899999999997652 45789999999998875 567777888999999999999775  


Q ss_pred             chhHHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHH
Q 039940          332 EFDIKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYA  410 (449)
Q Consensus       332 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  410 (449)
                      |.++..+.++++..+..+  ++.+..++. .+++..|+++++++|++++..|-.+|.-+.+..+.+...      .....
T Consensus       591 DdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r------i~~~k  662 (708)
T PF05804_consen  591 DDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER------IRREK  662 (708)
T ss_pred             hHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH------hhHHH
Confidence            789999999999999997  356677765 789999999999999999999999999999999888743      22223


Q ss_pred             HHHHhcchHHHHHHH
Q 039940          411 RLVEGAEGFKKIEDL  425 (449)
Q Consensus       411 ~~~~~~~~~~~l~~l  425 (449)
                      -......+++.++.=
T Consensus       663 F~~hN~~WLe~v~~~  677 (708)
T PF05804_consen  663 FRWHNAQWLEMVESQ  677 (708)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            344455678877653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=2.9e-25  Score=211.44  Aligned_cols=388  Identities=20%  Similarity=0.177  Sum_probs=317.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940           25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL  104 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  104 (449)
                      .++-.++++. ..+.+.+...|.+++..  ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+
T Consensus       253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            3344444443 44555778889999864  466677899999999999999998 8999999999999998 68899999


Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC
Q 039940          105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ  184 (449)
Q Consensus       105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  184 (449)
                      .+.|+++.|.+++.+++..++..++++|.|++.+. ..|..+.+.|.+|.++.++.   ++..+..++.+|++++..+..
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhh
Confidence            99999999999999999999999999999997665 67888889999999999993   245667799999999998866


Q ss_pred             CChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940          185 PPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT  263 (449)
Q Consensus       185 ~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~  263 (449)
                      +......+++|.++.++-+ +++.+...++..+.|++.+.. +.+.+.+.++++.|+........   ...+.++.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence            6666668899999987654 567777788899999997765 45778888889998887655332   235578999999


Q ss_pred             CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHH
Q 039940          264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAW  341 (449)
Q Consensus       264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~  341 (449)
                      +.+.....+.  +.+..|+.++..+.+.+...++.++|+|+...+......+.+.+++|.+.+.|..+  ++++..++..
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            8755444443  47888888888776888999999999999876555444555689999999999876  5689999999


Q ss_pred             HHHHhhccCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940          342 AISNATKAGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF  419 (449)
Q Consensus       342 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (449)
                      .++.++.  +++....+.+.|+++.|+.++..  +|.++....+.++++++...+..             ...+.+.++.
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~  622 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIP  622 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchH
Confidence            9999987  67888889999999999999975  47889999999999999886653             4566778899


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHH
Q 039940          420 KKIEDLKSHGNNGIREKAVTILE  442 (449)
Q Consensus       420 ~~l~~l~~~~~~~i~~~a~~~i~  442 (449)
                      ..+-.++++.|++|++.|...+.
T Consensus       623 ~ylidL~~d~N~~ir~~~d~~Ld  645 (708)
T PF05804_consen  623 AYLIDLMHDKNAEIRKVCDNALD  645 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999888776654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=8.7e-20  Score=169.60  Aligned_cols=391  Identities=20%  Similarity=0.282  Sum_probs=315.1

Q ss_pred             cHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           23 ILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        23 ~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      -+.+|++.|+.+ |+..|++|+..|+.++....++....+--.-++|.|+.+|++....+++..|+++|.+++..-|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            467888888876 9999999999999988766566666555667899999999998779999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          102 KVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      ..+++.++||.|+.-|.. +..++.++++.+|-.+++..+.   .+++.|++...+.++ +-....+++.|+.+..|.|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999997765 6789999999999999988754   577899999999999 77788999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHccc---CChhHHHHHHHhCcHHHHHHhhCCCCC----cchhh
Q 039940          181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSD---GTNDKIQAVIEAGVCGPLVELLGHPSP----SVLIP  253 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~----~v~~~  253 (449)
                      ..+...+..+...+|.|..+|...|.+..+.++-|+..++.   +.++..+.+...|++.....++.....    .+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            99888888889999999999999999999999999999874   456777888899999999999876532    34455


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc-------------h-hHHHHHH---------------------
Q 039940          254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK-------------K-SIKKESC---------------------  298 (449)
Q Consensus       254 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-------------~-~v~~~a~---------------------  298 (449)
                      .++.+.-++.+++.....+.+.++...|..+|.....             + ++-....                     
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            6778888888888888888888888888877754200             0 0000000                     


Q ss_pred             ------------------------------HHHH-------------HH---------hcCCHHHHHHHHHCCChHHHHH
Q 039940          299 ------------------------------WTVS-------------NI---------TAGNRKQIQAVIDAGLIVPLVN  326 (449)
Q Consensus       299 ------------------------------~~l~-------------nl---------~~~~~~~~~~l~~~~~~~~L~~  326 (449)
                                                    +.+.             +.         ....|+..+.+.+ .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                                          0001             00         0011222333333 47889999


Q ss_pred             HhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHc-CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 039940          327 LLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVRE-GCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIG  404 (449)
Q Consensus       327 ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  404 (449)
                      ++.+. ++.||..++.||..++...+.+.+..++.. .+-..+-.++.++|..+...|+.....|++..++         
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd---------  633 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD---------  633 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH---------
Confidence            99877 999999999999999998888888887764 5556677899999999999999999999987765         


Q ss_pred             cccHHHHHHHhcchHHHHHHHhcCCC
Q 039940          405 DVNQYARLVEGAEGFKKIEDLKSHGN  430 (449)
Q Consensus       405 ~~~~~~~~~~~~~~~~~l~~l~~~~~  430 (449)
                         .|...|++.|++..+.+|....+
T Consensus       634 ---~F~~~F~REGV~~~v~~L~~~~~  656 (1051)
T KOG0168|consen  634 ---TFSPSFRREGVFHAVKQLSVDSN  656 (1051)
T ss_pred             ---HhhhhHhhhhHHHHHHHHhccCC
Confidence               47889999999999999977443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.88  E-value=3.9e-20  Score=172.46  Aligned_cols=379  Identities=21%  Similarity=0.232  Sum_probs=290.6

Q ss_pred             cCCCCCCCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHH
Q 039940            7 LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA   86 (449)
Q Consensus         7 ~p~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a   86 (449)
                      +++..+.+.  .+..-.+|..+.+|.+.++.+|..|+..+..++.+. ......+.+.|+|+.|+.++.+.+ .+++.+|
T Consensus       220 ~~s~~~~p~--~w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~a  295 (717)
T KOG1048|consen  220 LDSILKDPR--SWRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQA  295 (717)
T ss_pred             CcccccCCc--cccccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHH
Confidence            344444444  256677899999999999999999999998886654 666678889999999999999999 8999999


Q ss_pred             HHHHHHhcCCChh--hhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc--
Q 039940           87 AWVLTNIASGTSV--NTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE--  161 (449)
Q Consensus        87 ~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--  161 (449)
                      +++|.|+..+...  ++-.+.+.++++.++.+|.. .|.++++.+..+|+||++.+ ..+..+. ...+..|...+..  
T Consensus       296 cgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-~~al~tLt~~vI~P~  373 (717)
T KOG1048|consen  296 CGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-TSALSTLTDNVIIPH  373 (717)
T ss_pred             HHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-HHHHHHHHHhhcccc
Confidence            9999999986655  88889999999999999986 89999999999999998774 3444442 3445555444321  


Q ss_pred             -----------cccHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcC------CCHHHHHHHHHHHHHcccC
Q 039940          162 -----------HARLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLIHL------DDEEVLRNVCWTLSNLSDG  222 (449)
Q Consensus       162 -----------~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~  222 (449)
                                 ..+.++..++..||.|++...  ....+....|.+..|+..+++      .|.+..++++..+.|++..
T Consensus       374 Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr  453 (717)
T KOG1048|consen  374 SGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR  453 (717)
T ss_pred             cccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence                       113678899999999999865  233444558888888888762      3677888888899888743


Q ss_pred             Ch-----hHH--------------------------H----------------------HHHHhCcHHHHHHhhC-CCCC
Q 039940          223 TN-----DKI--------------------------Q----------------------AVIEAGVCGPLVELLG-HPSP  248 (449)
Q Consensus       223 ~~-----~~~--------------------------~----------------------~~~~~~~~~~L~~ll~-~~~~  248 (449)
                      -.     ...                          +                      .+....++..-..++. ..++
T Consensus       454 l~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~  533 (717)
T KOG1048|consen  454 LEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKND  533 (717)
T ss_pred             hhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcch
Confidence            22     000                          0                      0111123333233333 3456


Q ss_pred             cchhhHHHHHHHhhcCCh----hhHHHH-HhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940          249 SVLIPALRTVGNIVTGDD----FQTQCV-INHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP  323 (449)
Q Consensus       249 ~v~~~a~~~l~~l~~~~~----~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  323 (449)
                      .+.+.++.+|-|++.+..    .....+ .+..+++.+++++..+ ++.+...++.+|.|++.+ ... +.++..++++.
T Consensus       534 ~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~rn-k~ligk~a~~~  610 (717)
T KOG1048|consen  534 NTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IRN-KELIGKYAIPD  610 (717)
T ss_pred             HHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-chh-hhhhhcchHHH
Confidence            788899999999988753    233334 5789999999999999 999999999999999774 233 35556789999


Q ss_pred             HHHHhhcC------chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhh
Q 039940          324 LVNLLQDA------EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       324 L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      |++.|...      +.++...++.+|.+++.. +.+..+.+.+.++++.|+.+..+. +++..+.+...|..|..+.+-
T Consensus       611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999765      368999999999999976 788999999999999999998864 668888998899888877653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.87  E-value=2.6e-19  Score=166.99  Aligned_cols=364  Identities=22%  Similarity=0.245  Sum_probs=282.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc--hh
Q 039940           66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG--CR  143 (449)
Q Consensus        66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~  143 (449)
                      -+|..+.+|.+.+ +.++..|+.-+-.+|.++.+.+..+.+.|+|+.|+.++.+.+.+++.+|+++|.||..+...  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            3788899999999 89999999999999999999999999999999999999999999999999999999977655  67


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--------------CHHHH
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD--------------DEEVL  209 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--------------~~~~~  209 (449)
                      -.+.+.++++.++..+.+..|.++++.+..+|+||++.+ ..+.......+..|..-+-.+              +.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            778899999999999988899999999999999999995 444555566666666544311              35788


Q ss_pred             HHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChh---------------
Q 039940          210 RNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTGDDF---------------  267 (449)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~---------------  267 (449)
                      .++..||.|++....+..+.+.+. |+++.|+..+++      .+....++++-++.|++..-..               
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            999999999998766655555544 889999988763      3445566677777777643210               


Q ss_pred             ----------------hHHH----------------------HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC-
Q 039940          268 ----------------QTQC----------------------VINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN-  308 (449)
Q Consensus       268 ----------------~~~~----------------------~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-  308 (449)
                                      ..+.                      +....++..-..++....+..+.+.++.+|-|++.+. 
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                            0000                      1112234444555544437889999999999999743 


Q ss_pred             ---HHHHHHH-HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC------CHHH
Q 039940          309 ---RKQIQAV-IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA------DPEI  378 (449)
Q Consensus       309 ---~~~~~~l-~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~~  378 (449)
                         ......+ .+..+++.+++++..++..+.+.++.+|.|++.+  .. .+.++..++++.|++.|...      ++++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IR-NKELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--ch-hhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence               2333334 4678999999999999999999999999999985  33 34556688999999999754      3578


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHhcCC
Q 039940          379 VTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTILETYWLK  447 (449)
Q Consensus       379 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i~~~~~~  447 (449)
                      ...++..|.+++...-..             +.-+.+.+|+++|..+..+ .++...+.|..++..+|.+
T Consensus       629 v~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             HHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            888999999999655443             5566688999999999444 5678999999999887753

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.82  E-value=5.5e-16  Score=146.95  Aligned_cols=395  Identities=17%  Similarity=0.179  Sum_probs=294.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940           25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL  104 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  104 (449)
                      +.++..|++.+.+....++.+|..+....  .... + ..+..+.|...|.+++ +.++..+++.+.++..++......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~-l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDS-L-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHH-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34778888877777778888898887642  2222 2 5677899999999999 8999999999999999777778888


Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC
Q 039940          105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ  184 (449)
Q Consensus       105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  184 (449)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..+..++ ...+..++..+..++.+++...+.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            88999999999999999999999999999999876554 4455777788888888 555778888999999999988743


Q ss_pred             C-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcc------hhhHHHH
Q 039940          185 P-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV------LIPALRT  257 (449)
Q Consensus       185 ~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v------~~~a~~~  257 (449)
                      . ......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+...+-      ....+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            3 233347899999999999999999999999999998 5556788999999999999998743222      2234567


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHC-CC----hHHHHHHhhcC
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV-IDA-GL----IVPLVNLLQDA  331 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~-~~----~~~L~~ll~~~  331 (449)
                      +++++...+....... ..++..+..++.+. |+..+..|.-+++.++. +.+....+ ... +.    +..+.....++
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~  349 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSG  349 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            7888775443332221 34666777788888 99999999999999975 45655555 332 23    44444445556


Q ss_pred             chhHHHHHHHHHHHhhccCCH---HH----HHHHHH---cCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccC
Q 039940          332 EFDIKKEAAWAISNATKAGTQ---EQ----IKYLVR---EGCIK-PLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRG  400 (449)
Q Consensus       332 ~~~v~~~a~~aL~~l~~~~~~---~~----~~~l~~---~~~~~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  400 (449)
                      ..++|..++.++.++...+..   +.    .+..++   .+-.. .+.++++.+=++++..++..+..++....-.    
T Consensus       350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~----  425 (503)
T PF10508_consen  350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ----  425 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH----
Confidence            789999999999999765432   11    222222   33444 7888888888999999999999999876442    


Q ss_pred             CCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940          401 STIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET  443 (449)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~  443 (449)
                               .......|.++-+-.-....+++.++.=-.++.+
T Consensus       426 ---------~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~  459 (503)
T PF10508_consen  426 ---------REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKA  459 (503)
T ss_pred             ---------HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHH
Confidence                     4556666777777666656666665544444443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.81  E-value=4.8e-18  Score=146.97  Aligned_cols=377  Identities=15%  Similarity=0.131  Sum_probs=267.6

Q ss_pred             CHHHHHHHHHHHHHHhccC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHH
Q 039940           35 DNSMQLEAATQFRRLLSIE--RSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPI  112 (449)
Q Consensus        35 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  112 (449)
                      +..++..+..++......+  +....+..+..+.++.|.+...+++ .++..++.++|+|+|.++.++|..+.+.|+-..
T Consensus        55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi  133 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI  133 (604)
T ss_pred             cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence            4455555666666664321  0122333456778888888888887 799999999999999999999999999999888


Q ss_pred             HHHhhCC-------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCC-
Q 039940          113 FVKLLAS-------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKP-  183 (449)
Q Consensus       113 L~~~l~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~-  183 (449)
                      ++..|+.       .+.+...-+...|.|..-++.+.+..+++.|+++.+...+. +..+...-+.....+.|+.+-.. 
T Consensus       134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e  213 (604)
T KOG4500|consen  134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE  213 (604)
T ss_pred             hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence            8888763       23567777788999999899899999999999999888774 33444444444433333322110 


Q ss_pred             -CCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCc-------chhh
Q 039940          184 -QPPFDQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPS-------VLIP  253 (449)
Q Consensus       184 -~~~~~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~-------v~~~  253 (449)
                       -........+.-.+++++.+. ++++.+.+...+...+.++.-. -.+.+.|.++.++.+++. ....       ....
T Consensus       214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~  292 (604)
T KOG4500|consen  214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR  292 (604)
T ss_pred             hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence             111122234444555555543 5677777888888888766533 336777999999998876 2211       2233


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcC-CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--
Q 039940          254 ALRTVGNIVTGDDFQTQCVINHG-AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD--  330 (449)
Q Consensus       254 a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--  330 (449)
                      ++....-+..++ +..+.+...+ +++.+..++.+. |......+..+++|+++.+. ...++++.|++..|++++..  
T Consensus       293 ~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~  369 (604)
T KOG4500|consen  293 IAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEK  369 (604)
T ss_pred             hhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhc
Confidence            444444445553 3444555444 899999999999 99999999999999998764 45588889999999999965  


Q ss_pred             ---CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCccc
Q 039940          331 ---AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVN  407 (449)
Q Consensus       331 ---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  407 (449)
                         ++.+++..++.||.|++..  ......+...|+.+.+...++...|.+..+-+..+.-+....+...          
T Consensus       370 ~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a----------  437 (604)
T KOG4500|consen  370 DVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIA----------  437 (604)
T ss_pred             CCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHH----------
Confidence               3778999999999999984  3556778899999999999999999999999999987776555432          


Q ss_pred             HHHHHHHhcchHHHHHHHhcCCC
Q 039940          408 QYARLVEGAEGFKKIEDLKSHGN  430 (449)
Q Consensus       408 ~~~~~~~~~~~~~~l~~l~~~~~  430 (449)
                        .+..+.-..+++|..+..+++
T Consensus       438 --~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  438 --CELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             --HHHhcCHHHHHHHHHhhhCCc
Confidence              344444445666666655554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.81  E-value=1.9e-17  Score=161.80  Aligned_cols=369  Identities=18%  Similarity=0.182  Sum_probs=282.6

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHhcCCC
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED--YPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~   97 (449)
                      .......+..++...|.   ..-++.|..+...  .+....++..|.++.|++++.-++  ..+.+..|-.+|.||....
T Consensus       195 ~vets~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq  269 (2195)
T KOG2122|consen  195 SVETSNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ  269 (2195)
T ss_pred             chhhhhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC
Confidence            34455566666666555   3445566666443  677788999999999999998664  2577888999999999866


Q ss_pred             hhhhHHHHhCCChHHHHH----------hhCC--------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHH
Q 039940           98 SVNTKVLIDHGAVPIFVK----------LLAS--------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL  159 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~----------~l~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  159 (449)
                      ++....-.+..+++.|-+          .+..        ++..-...|+.+|..++++ .+.|..+.+.|++..+.+++
T Consensus       270 PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl  348 (2195)
T KOG2122|consen  270 PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELL  348 (2195)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHH
Confidence            655444333333333321          1111        1122223567777777554 57899999999999998877


Q ss_pred             cc-----------cccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH
Q 039940          160 NE-----------HARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK  226 (449)
Q Consensus       160 ~~-----------~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  226 (449)
                      .-           .....+++++..+|.||+.++...  ......+++..++..|.+...++..-....|.||+-..+.+
T Consensus       349 ~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~n  428 (2195)
T KOG2122|consen  349 QVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSN  428 (2195)
T ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccccc
Confidence            41           123568999999999999998332  33445899999999999988899999999999999766554


Q ss_pred             HHH-HHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHHHHH-hcCCHHHHHHHhccCC---chhHHHHHHHH
Q 039940          227 IQA-VIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYLLALLINNH---KKSIKKESCWT  300 (449)
Q Consensus       227 ~~~-~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~---~~~v~~~a~~~  300 (449)
                      .+. +.+.|-+..|... |....+.....++.+||||+.++.+++..|- -.|.+.+|+.+|....   .-.+.+.|.++
T Consensus       429 mKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGI  508 (2195)
T KOG2122|consen  429 MKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGI  508 (2195)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccH
Confidence            444 4555777777765 4456667889999999999998877766665 4689999999997541   34677888888


Q ss_pred             HHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH
Q 039940          301 VSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE  377 (449)
Q Consensus       301 l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  377 (449)
                      |.|...   .++..++.+.+++++..|+..|++++..+..++|.+|+||... +++..+.|++.|++..|.+++++++..
T Consensus       509 LRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkM  587 (2195)
T KOG2122|consen  509 LRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKM  587 (2195)
T ss_pred             HHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhh
Confidence            888875   5667788888999999999999999999999999999999998 788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 039940          378 IVTVCLKGLENILKVGEA  395 (449)
Q Consensus       378 ~~~~~~~~l~~l~~~~~~  395 (449)
                      +...+..+|.|++.+.+-
T Consensus       588 Ia~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  588 IAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             hhhhHHHHHHHHhcCCch
Confidence            999999999999987743

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.81  E-value=5.6e-16  Score=146.90  Aligned_cols=367  Identities=19%  Similarity=0.216  Sum_probs=278.0

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940           68 PRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL  147 (449)
Q Consensus        68 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  147 (449)
                      +.+...+++.+ .+....++.+|..+... ......  ..+..+.|...|.++++.+|..+++.++++...+......+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            33778888877 67778888999988873 222222  446789999999999999999999999999988877777777


Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI  227 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  227 (449)
                      +.+.++.++.++ .+++.++...|+.+|.+++...+........+.++.|..++.+++..+|..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            889999999999 8899999999999999999986544444446668889999988888999999999999999999988


Q ss_pred             HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-ch---h-HHHHHHHHHH
Q 039940          228 QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KK---S-IKKESCWTVS  302 (449)
Q Consensus       228 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~---~-v~~~a~~~l~  302 (449)
                      ..+.+.|+++.++..++++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.. |+   . .--......+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            989999999999999999888899999999999999 5777888899999999999997652 22   1 1222346677


Q ss_pred             HHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHH-HHcC-----ChHHHHhhccCCCH
Q 039940          303 NITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYL-VREG-----CIKPLCDLLLCADP  376 (449)
Q Consensus       303 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~~~~L~~ll~~~~~  376 (449)
                      +++...+..+.... ..++..+.+++.+.|+..+..|..+++.++.  ..+....+ ...+     ++..+.....+...
T Consensus       275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            77764444332211 2356667777788899999999999999987  45666666 3322     35566666677788


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcch--HH-HHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 039940          377 EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG--FK-KIEDLKSHGNNGIREKAVTILETYWLK  447 (449)
Q Consensus       377 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~l~~~~~~~i~~~a~~~i~~~~~~  447 (449)
                      +++..++.++.+++...+.....    .-.+.....+...+.  .. .+..+...+=++++-.+-.++...+..
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            99999999999998766542110    000111222222222  22 666777777799999999998876643

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1e-16  Score=134.55  Aligned_cols=310  Identities=13%  Similarity=0.127  Sum_probs=251.3

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChH
Q 039940           33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVP  111 (449)
Q Consensus        33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  111 (449)
                      +++..+...++.+|..+..+     ...+.+..++..++++|... ++.++....+.++..-|..++.+++.+++.++++
T Consensus       118 ~~~~~~l~ksL~al~~lt~~-----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHK-----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcC-----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            56677777777777777433     23466778889999988653 3378888999999999998999999999999999


Q ss_pred             HHHHhhCCCC-hHHHHHHHHHHHHHhcCCC---------chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          112 IFVKLLASPS-DDVREQAVWALGNIVAHSP---------GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       112 ~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      .+.+.+.... ..+...+.|++.-+..++.         ...+.+...|++..|.+.+.-..++.+...++.+|..++-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9998886533 4566778999999876543         23455667788889999997777899999999999999988


Q ss_pred             CCCCChhhhhchHHHHHHhhcCC-CHH---HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHH
Q 039940          182 KPQPPFDQVRPVLPALAQLIHLD-DEE---VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPAL  255 (449)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~ll~~~-~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~  255 (449)
                      +.........|++..++.++.+. +.+   ....++..|..++-++ +....+++.|+.+.++.++..  ++|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            76666667789999999999874 333   4567888888888544 456678999999999998754  6788999999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940          256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD  334 (449)
Q Consensus       256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  334 (449)
                      .+++.++-..++....+++.|+-...++.|+.. ....+++.|||.+.|++.++.++...++. .+++.|++.....++.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~t  430 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHET  430 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999754 25679999999999999988888877776 5678888888888889


Q ss_pred             HHHHHHHHHHHhhcc
Q 039940          335 IKKEAAWAISNATKA  349 (449)
Q Consensus       335 v~~~a~~aL~~l~~~  349 (449)
                      ....|..+|..+..+
T Consensus       431 ce~~akaALRDLGc~  445 (461)
T KOG4199|consen  431 CEAAAKAALRDLGCD  445 (461)
T ss_pred             HHHHHHHHHHhcCcc
Confidence            999999999988764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=8.8e-16  Score=128.99  Aligned_cols=319  Identities=15%  Similarity=0.162  Sum_probs=253.3

Q ss_pred             HcCCHHHHHH---hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhc
Q 039940           63 QAGIVPRFVE---FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVA  137 (449)
Q Consensus        63 ~~~~i~~L~~---ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~  137 (449)
                      ..|..+.++-   +-.+++ ..+...++.+|..+....|+    +.+..++..++++|..  ++.++-...+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            4455555443   333455 67888899999998886665    5677889999999864  667888888888888888


Q ss_pred             CCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCC----------hhhhhchHHHHHHhhcCC-CH
Q 039940          138 HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP----------FDQVRPVLPALAQLIHLD-DE  206 (449)
Q Consensus       138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~----------~~~~~~~l~~l~~ll~~~-~~  206 (449)
                      .....|+.+++.++++-+...+.......+.+.++|++..+..++..+.          .....+++..|+..++-. |+
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            8888999999999998888788666656899999999999988773221          112256788888888754 79


Q ss_pred             HHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC-Ccch---hhHHHHHHHhhcCChhhHHHHHhcCCHHHHH
Q 039940          207 EVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS-PSVL---IPALRTVGNIVTGDDFQTQCVINHGAVPYLL  282 (449)
Q Consensus       207 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~---~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~  282 (449)
                      ++....+.+|..++-.+ +..+.+.+.|+++.+++++.+.+ ...+   ..++..|..++- +++.+..+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            99999999999998655 45677999999999999998843 3344   556777777765 577888899999999999


Q ss_pred             HHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940          283 ALLI-NNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLV  359 (449)
Q Consensus       283 ~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~  359 (449)
                      .++. +..+|.+..+++.+++-++-.+|+....+++.|+-...++.++..  ...++++||+.+.|++.+ +.++++.++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence            9874 333889999999999999988888888999999999999999876  578999999999999998 567777766


Q ss_pred             HcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940          360 REGCIKPLCDLLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~  390 (449)
                      .. +++.|+..-...++.+...+-.+|..+-
T Consensus       414 ~~-GiE~Li~~A~~~h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  414 AN-GIEKLIRTAKANHETCEAAAKAALRDLG  443 (461)
T ss_pred             hc-cHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence            54 6788888888888888777777776554

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1e-15  Score=134.67  Aligned_cols=391  Identities=16%  Similarity=0.161  Sum_probs=299.7

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~   97 (449)
                      ...-..+..+++.|..++.++.......|.++.-.  .++...+.+.|++..|+++..... ++++..++..+.|++. +
T Consensus       300 MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D  375 (791)
T KOG1222|consen  300 MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-D  375 (791)
T ss_pred             HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-c
Confidence            34456788999999988888888888889888655  688889999999999999999999 8999999999999998 6


Q ss_pred             hhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940           98 SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN  177 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~  177 (449)
                      ...+..+++.|.+|.+..++.++..  ...|+..++.++.++ ..+.++....+++.+.+.+....+.++-........|
T Consensus       376 ~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciN  452 (791)
T KOG1222|consen  376 SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCIN  452 (791)
T ss_pred             ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHH
Confidence            7789999999999999999986543  344778888887665 5677888888999999888788888888888888899


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHH
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPAL  255 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~  255 (449)
                      +|.+..+.+......++..+...- +..|+- .   ...+.|++++.......+++  .+..|...++.. +++...+++
T Consensus       453 l~lnkRNaQlvceGqgL~~LM~ra~k~~D~l-L---mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~ECl  526 (791)
T KOG1222|consen  453 LCLNKRNAQLVCEGQGLDLLMERAIKSRDLL-L---MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECL  526 (791)
T ss_pred             HHhccccceEEecCcchHHHHHHHhcccchH-H---HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHH
Confidence            999987777777777787777654 333432 2   34556777776543333433  355566666554 455778889


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--c
Q 039940          256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--E  332 (449)
Q Consensus       256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~  332 (449)
                      ++++|+....-+....+.+.+.+|++-..|..+. ..++.-...-+++.++.. ......+...|+++.|+++|+..  +
T Consensus       527 GtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeD  605 (791)
T KOG1222|consen  527 GTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQED  605 (791)
T ss_pred             HHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhccc
Confidence            9999998766666666678899999999987653 344666677777777553 34445566789999999999765  7


Q ss_pred             hhHHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHH
Q 039940          333 FDIKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYAR  411 (449)
Q Consensus       333 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  411 (449)
                      .+...+.++++..+..+  ...++.++. ...-..+++++++.+.++++.|-.+|..+......+.+.-        -.+
T Consensus       606 DEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI--------~~E  675 (791)
T KOG1222|consen  606 DEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRI--------AGE  675 (791)
T ss_pred             chHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHH--------hhh
Confidence            88889999999999987  455666665 4556789999999999999999999999999888876531        123


Q ss_pred             HH--HhcchHHHHHHHhcCCCHH
Q 039940          412 LV--EGAEGFKKIEDLKSHGNNG  432 (449)
Q Consensus       412 ~~--~~~~~~~~l~~l~~~~~~~  432 (449)
                      .|  +.+.+++.++.-|.+.++.
T Consensus       676 kFrwHNsQWLeMVEs~q~ddsEq  698 (791)
T KOG1222|consen  676 KFRWHNSQWLEMVESQQRDDSEQ  698 (791)
T ss_pred             hcccchhHHHHHHHHhhccchhh
Confidence            33  3455777777666655544

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.76  E-value=1.8e-15  Score=131.22  Aligned_cols=401  Identities=12%  Similarity=0.041  Sum_probs=294.3

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC------CCHHHHHHHHHHHHHhc
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE------DYPRLQFEAAWVLTNIA   94 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~~~~~~a~~~L~~l~   94 (449)
                      .+.++.+.+...|++.++.....++|.+.+..+ .+.+..+.+.|+-..+++.|+..      ...+....+...|.|..
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            456777777778899999999999999998776 88899999999988888877642      22356667788999999


Q ss_pred             CCChhhhHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHH
Q 039940           95 SGTSVNTKVLIDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIG  171 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  171 (449)
                      .++.+.+....+.|+++.|...+.  -.+....+..+..+.|+.+-- ....+...+......+++++.....+...+.+
T Consensus       165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~  244 (604)
T KOG4500|consen  165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI  244 (604)
T ss_pred             CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence            999999999999999999999875  356667777777777665322 22344555666677788888777788888999


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CC-------HHHHHHHHHHHHHcccCChhHHHHHHHhC-cHHHHHHh
Q 039940          172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-DD-------EEVLRNVCWTLSNLSDGTNDKIQAVIEAG-VCGPLVEL  242 (449)
Q Consensus       172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~l  242 (449)
                      ...+...+.++.-.-.....|.+..+..+++. .+       -.....++....-+..+++. .+.+...+ +++.+.+.
T Consensus       245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHH
Confidence            99999998887555455556777778877764 21       22333444444445555544 34455555 89999999


Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHC
Q 039940          243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH----KKSIKKESCWTVSNITAGNRKQIQAVIDA  318 (449)
Q Consensus       243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  318 (449)
                      +.+++......+.-+++|+++. +.....+++.+++..|++++....    +.+++..++.+|.|+.-.- .+...++..
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~a  401 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPA  401 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhcccc
Confidence            9999999999999999999997 555567888999999999985421    5567788899999998632 334578899


Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhh
Q 039940          319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCADPE-IVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~  396 (449)
                      |+.+.++..++...|++...-..++.-+..+. +-....+. +...++.|++.-+++|.. +.-...+.+..+++.....
T Consensus       402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k  480 (604)
T KOG4500|consen  402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK  480 (604)
T ss_pred             chHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence            99999999999999999999999998887642 21222332 345678888888887765 6667777777777664321


Q ss_pred             hccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHH
Q 039940          397 KNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA  437 (449)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a  437 (449)
                                 ...-.+-+.||++....+.....-..+..|
T Consensus       481 -----------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa  510 (604)
T KOG4500|consen  481 -----------DVILTVPKSGGIKEKVSMFTKNHINMQNEA  510 (604)
T ss_pred             -----------hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence                       235566677888887777555544444443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.1e-14  Score=139.52  Aligned_cols=365  Identities=19%  Similarity=0.215  Sum_probs=254.7

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh--
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS--   98 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--   98 (449)
                      .+.++.+++..+|+++..|..|+..|..+...-+......+  ..+.+.+.+.+.+++.+ ++..|+++++.++...+  
T Consensus       117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~  193 (1075)
T KOG2171|consen  117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN  193 (1075)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc
Confidence            46678888888999999999999999988654322222211  13467777888888854 99999999998887443  


Q ss_pred             -hhhHHHHhCCChHHHHHhh----CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-ccccHHHHHHHH
Q 039940           99 -VNTKVLIDHGAVPIFVKLL----ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-EHARLSMLRIGT  172 (449)
Q Consensus        99 -~~~~~~~~~~~i~~L~~~l----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~  172 (449)
                       ..+..+.  ..+|.++..+    ..++......++.+|.-++...|.+-...++ .++...+.... +.-++.+|..|+
T Consensus       194 ~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~AL  270 (1075)
T KOG2171|consen  194 KSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLAL  270 (1075)
T ss_pred             hHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHH
Confidence             3333333  3455555554    4566766777888888887665543222211 12222222221 233566666666


Q ss_pred             HHHHHhhcCCCC----------------------------------------------------------CChhhhhchH
Q 039940          173 WTLSNLCKGKPQ----------------------------------------------------------PPFDQVRPVL  194 (449)
Q Consensus       173 ~~l~~l~~~~~~----------------------------------------------------------~~~~~~~~~l  194 (449)
                      .++..++...|.                                                          .........+
T Consensus       271 e~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~  350 (1075)
T KOG2171|consen  271 EFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLF  350 (1075)
T ss_pred             HHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHH
Confidence            666555444110                                                          0001113445


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940          195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN  274 (449)
Q Consensus       195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  274 (449)
                      +.+-.++.+.++.-|..++.+|+.++.+..+.....++ .+++.++..+.++++.||..||.+++.++..-....+....
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~  429 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH  429 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence            56677778889999999999999999998876665444 68888999999999999999999999999887776776677


Q ss_pred             cCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCChH-HHHHHhhcCchhHHHHHHHHHHHhhccCCH
Q 039940          275 HGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-QIQAVIDAGLIV-PLVNLLQDAEFDIKKEAAWAISNATKAGTQ  352 (449)
Q Consensus       275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  352 (449)
                      ..+++.|+..+.+..++.++.+|+.++-|+...++. .+...+. +++. .+..++.++.+.+++.+..+|+..+.....
T Consensus       430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            788889999999887889999999999999875443 3333333 4555 455556777999999999999999998766


Q ss_pred             HHHHHHHHcCChHHHHhhccCCC----HHHHHHHHHHHHHHHHhhhh
Q 039940          353 EQIKYLVREGCIKPLCDLLLCAD----PEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       353 ~~~~~l~~~~~~~~L~~ll~~~~----~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+.+|+-.  .++.|...+++.+    ..++-++.++++-+-....+
T Consensus       509 ~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk  553 (1075)
T KOG2171|consen  509 KFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK  553 (1075)
T ss_pred             hhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence            67777655  7888888887654    23566777777777665544

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.73  E-value=8e-16  Score=150.66  Aligned_cols=327  Identities=19%  Similarity=0.188  Sum_probs=250.0

Q ss_pred             hhhcHHHHHHHhcC---CCHHHHHHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHh-------hcCC------CCHH
Q 039940           20 KLEILPAMVAGVWS---DDNSMQLEAATQFRRLLSIERSLP--IDEVIQAGIVPRFVEF-------LLRE------DYPR   81 (449)
Q Consensus        20 ~~~~i~~l~~~l~s---~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~l-------l~~~------~~~~   81 (449)
                      ..|-+|.+++.|.-   ++.+.+..|-.+|.++.....++.  ++++.--.+++.+..+       ++..      ...+
T Consensus       233 ~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~  312 (2195)
T KOG2122|consen  233 RSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDE  312 (2195)
T ss_pred             hccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence            46789999999984   356888889999999976432221  2222222233333222       2211      1123


Q ss_pred             HHH-HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC------------CChHHHHHHHHHHHHHhcCCCchhhhHh-
Q 039940           82 LQF-EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNIVAHSPGCRNLVL-  147 (449)
Q Consensus        82 ~~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-  147 (449)
                      -+. .|+..|.+++. ++++|..+.+.|++.++-+++.-            ....+|..+..+|.||..++...+..+. 
T Consensus       313 H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs  391 (2195)
T KOG2122|consen  313 HQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS  391 (2195)
T ss_pred             hhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            344 78888888888 79999999999999999998742            1357999999999999988877666554 


Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHh-hcCCCHHHHHHHHHHHHHcccCCh
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQL-IHLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~l-l~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                      ..|++..++..| .+..+++..-.+.+|.||+-.....  ......|.+..|..+ ++.........++.+|+||+.+..
T Consensus       392 ~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  392 QRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence            568899999999 5556678888889999999765222  222234555555544 455667788899999999998877


Q ss_pred             hHHHHHHHh-CcHHHHHHhhCCCC----CcchhhHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940          225 DKIQAVIEA-GVCGPLVELLGHPS----PSVLIPALRTVGNIVT---GDDFQTQCVINHGAVPYLLALLINNHKKSIKKE  296 (449)
Q Consensus       225 ~~~~~~~~~-~~~~~L~~ll~~~~----~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  296 (449)
                      ++...+... |.+.+|+.+|....    ..+.+.+-.+|.|.+.   ....+++.+.+++.+..|+..|++. .-.+..+
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSN  549 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSN  549 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeec
Confidence            665555554 88999999998753    3577777777777653   4577888888999999999999999 8999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      +|++|+||...+++..+.+++.|.++.|.+++.+.+..+..-++.+|.|++..
T Consensus       550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999886

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.72  E-value=2.6e-14  Score=130.61  Aligned_cols=403  Identities=15%  Similarity=0.075  Sum_probs=284.6

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhHHHHh
Q 039940           28 VAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTKVLID  106 (449)
Q Consensus        28 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~  106 (449)
                      +..+...+++....|..-..+++.+. .++...+++.|.++.++.++...+ ..+.+...+.++.....+.......+..
T Consensus        15 l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   15 LYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            34445667788888888999998876 566667999999999999988654 2566667777888888888888999999


Q ss_pred             CCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCCCchhhhH--hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC
Q 039940          107 HGAVPIFVKLLASPS-DDVREQAVWALGNIVAHSPGCRNLV--LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP  183 (449)
Q Consensus       107 ~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~  183 (449)
                      .+.++.++.++.+.+ ..+++.+++++.++...++......  .....++.+..+. ..+.......-+....+++....
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~  172 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD  172 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence            999999999999988 8999999999999987664332222  1222343333333 33445556666667777777764


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHH---HcccCChhHHHHH----HHhCcHH--HHHHhhCCCCCcchhhH
Q 039940          184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLS---NLSDGTNDKIQAV----IEAGVCG--PLVELLGHPSPSVLIPA  254 (449)
Q Consensus       184 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~----~~~~~~~--~L~~ll~~~~~~v~~~a  254 (449)
                      ........++.+.+.-++.......+..++.+++   ++..+++.....+    .+.|+.+  .+..++++++...+..+
T Consensus       173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s  252 (678)
T KOG1293|consen  173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS  252 (678)
T ss_pred             hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence            4455555777788887877778899999999999   7877777544332    3335555  55666777777667777


Q ss_pred             HHHHHHhhcCChhh----------------H-----------------------------------HHHHhcCCHHHHHH
Q 039940          255 LRTVGNIVTGDDFQ----------------T-----------------------------------QCVINHGAVPYLLA  283 (449)
Q Consensus       255 ~~~l~~l~~~~~~~----------------~-----------------------------------~~~~~~~~l~~L~~  283 (449)
                      +.++.++...+...                .                                   ....+....+...+
T Consensus       253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e  332 (678)
T KOG1293|consen  253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE  332 (678)
T ss_pred             HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence            77776665443000                0                                   00000111111111


Q ss_pred             Hh----------------------------------------------------ccCCchhHHHHHHHHHHHHhcCCHHH
Q 039940          284 LL----------------------------------------------------INNHKKSIKKESCWTVSNITAGNRKQ  311 (449)
Q Consensus       284 ll----------------------------------------------------~~~~~~~v~~~a~~~l~nl~~~~~~~  311 (449)
                      ++                                                    ... |...+..|+.++.++++.-...
T Consensus       333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            11                                                    112 4455666666676665533333


Q ss_pred             HHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940          312 IQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK  391 (449)
Q Consensus       312 ~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~  391 (449)
                      ...+-...+..+|+.++.+++..++..+.++++|++..- ......|++.|+++.+..++.+.++.++..++|+|++++-
T Consensus       412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            333445678999999999999999999999999999863 4567889999999999999999999999999999999998


Q ss_pred             hhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          392 VGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      .++...+           .+.. ..=+...|..+.++++..|++.+.++++++--
T Consensus       491 ~~de~~k-----------~~~~-~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  491 NCDEEEK-----------FQLL-AKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             cchHHHH-----------HHHH-HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            7766432           2222 22246778889999999999999999998754

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=3.5e-14  Score=125.11  Aligned_cols=377  Identities=18%  Similarity=0.122  Sum_probs=282.0

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHH
Q 039940           33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPI  112 (449)
Q Consensus        33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  112 (449)
                      .....+...|...|.+++..  ...-..++..+++..|++.|+.++ .++...+...|..++- ..+++..+.+.|++..
T Consensus       274 ~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveK  349 (791)
T KOG1222|consen  274 RKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEK  349 (791)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHH
Confidence            34466677788889999854  344456888899999999999999 7999999999999997 6788899999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhc
Q 039940          113 FVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP  192 (449)
Q Consensus       113 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  192 (449)
                      |++++....++++...+..+.|++.++. .+..+...|.+|.+..++..+.   -...|+..++.++.++....+.....
T Consensus       350 L~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTd  425 (791)
T KOG1222|consen  350 LLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTD  425 (791)
T ss_pred             HHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHH
Confidence            9999999999999999999999988774 5566668899999999994433   23457778888888876666666788


Q ss_pred             hHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940          193 VLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQ  270 (449)
Q Consensus       193 ~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~  270 (449)
                      +++.+.+.+-. .+.++-...+....|++-+.. +.+.+.+..++..|... ++..++    ..+..+.|++.+......
T Consensus       426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn  500 (791)
T KOG1222|consen  426 CIKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN  500 (791)
T ss_pred             HHHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence            89888876654 456666666665667775544 34556666667766654 333333    345677888887655555


Q ss_pred             HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhc
Q 039940          271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATK  348 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~  348 (449)
                      .+++  .+..|...++...+.....++.++++|+...+-+....+.+.+.+|.+...|..+  ..+++.....+++.++.
T Consensus       501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~  578 (791)
T KOG1222|consen  501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR  578 (791)
T ss_pred             HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence            5554  5777777777664677888999999999876555555566789999999999876  55677778888888877


Q ss_pred             cCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh
Q 039940          349 AGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK  426 (449)
Q Consensus       349 ~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  426 (449)
                        +......+...++++.++.+++.  .|.+.....+..+..+++.....             .-++++...--.+..|+
T Consensus       579 --d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLM  643 (791)
T KOG1222|consen  579 --DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLM  643 (791)
T ss_pred             --hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHH
Confidence              45666777788999999999975  46677777777777777663321             33455555556678899


Q ss_pred             cCCCHHHHHHHHH
Q 039940          427 SHGNNGIREKAVT  439 (449)
Q Consensus       427 ~~~~~~i~~~a~~  439 (449)
                      ++.|.++++-+..
T Consensus       644 HDkN~eiRkVCDn  656 (791)
T KOG1222|consen  644 HDKNAEIRKVCDN  656 (791)
T ss_pred             hcccHHHHHHHHH
Confidence            9999988765543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.71  E-value=8.9e-15  Score=133.65  Aligned_cols=375  Identities=14%  Similarity=0.081  Sum_probs=252.6

Q ss_pred             hhHhhhcHHHHHHHhcCCC--HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940           17 LQTKLEILPAMVAGVWSDD--NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA   94 (449)
Q Consensus        17 ~~~~~~~i~~l~~~l~s~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~   94 (449)
                      ...+.|.+|.+..+++.++  ++.....+..+..++.++ +.....+.+.+.++.|++++.++++..+....++++.++.
T Consensus        46 ~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~If  124 (678)
T KOG1293|consen   46 TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIF  124 (678)
T ss_pred             hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHH
Confidence            5778999999999999766  445544555666666666 7888889999999999999999886789999999999998


Q ss_pred             CCChh--hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHH
Q 039940           95 SGTSV--NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT  172 (449)
Q Consensus        95 ~~~~~--~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  172 (449)
                      ..++.  .........+++.+..++..+.......-+....++++. +..+......|+.+.+.-++ .......+..+.
T Consensus       125 et~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL  202 (678)
T KOG1293|consen  125 ETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAAL  202 (678)
T ss_pred             hcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHH
Confidence            84422  222222335566666666534444444445555555444 35555666666666555554 555677888888


Q ss_pred             HHHH---HhhcCCCCCChhhh-----hchHH--HHHHhhcCCCHHHHHHHHHHHHHcccCChhH----------------
Q 039940          173 WTLS---NLCKGKPQPPFDQV-----RPVLP--ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK----------------  226 (449)
Q Consensus       173 ~~l~---~l~~~~~~~~~~~~-----~~~l~--~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~----------------  226 (449)
                      .+++   ++..+++.......     .++.+  .+.+++++++..-+..++.|+..+...+.+.                
T Consensus       203 ~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~  282 (678)
T KOG1293|consen  203 LCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSL  282 (678)
T ss_pred             HHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHH
Confidence            8888   66666543333222     33443  3445555666655666666665555433100                


Q ss_pred             -----------------------------------HHHHHHhCcHHHHHHhhC---------------------------
Q 039940          227 -----------------------------------IQAVIEAGVCGPLVELLG---------------------------  244 (449)
Q Consensus       227 -----------------------------------~~~~~~~~~~~~L~~ll~---------------------------  244 (449)
                                                         .....+....+.+.+++.                           
T Consensus       283 i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~  362 (678)
T KOG1293|consen  283 IVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLE  362 (678)
T ss_pred             HHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhh
Confidence                                               000001111111111111                           


Q ss_pred             -------------------------CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHH
Q 039940          245 -------------------------HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCW  299 (449)
Q Consensus       245 -------------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  299 (449)
                                               ..+...+.+||.++.++++.-......+-..++.++|++++..+ +..++..+.+
T Consensus       363 ~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lg  441 (678)
T KOG1293|consen  363 YGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLG  441 (678)
T ss_pred             hhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHH
Confidence                                     12234555666666666554333333333567899999999888 8999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 039940          300 TVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV  379 (449)
Q Consensus       300 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~  379 (449)
                      +++|+.-.-......++..|+++.+..++.+.++.++..+.|+|.++.-.++......+...-....|..+.+++++.|+
T Consensus       442 ai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vq  521 (678)
T KOG1293|consen  442 AICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQ  521 (678)
T ss_pred             HHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHH
Confidence            99999975445667889999999999999999999999999999999998665555555555556677788889999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 039940          380 TVCLKGLENILKVGEA  395 (449)
Q Consensus       380 ~~~~~~l~~l~~~~~~  395 (449)
                      +.|+..+.|+.....+
T Consensus       522 eq~fqllRNl~c~~~~  537 (678)
T KOG1293|consen  522 EQCFQLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHHHHHhhcCcHH
Confidence            9999999999977443

>PRK09687 putative lyase; Provisional

Probab=99.70  E-value=4.9e-15  Score=128.90  Aligned_cols=256  Identities=15%  Similarity=0.132  Sum_probs=202.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      --++.|..+|.+.+ ..++..|++.|..+..  +         .+++.+..++.++++.+|..++++|+.+-... ..  
T Consensus        23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~--   87 (280)
T PRK09687         23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG--Q---------DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC--   87 (280)
T ss_pred             ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc--c---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc--
Confidence            34788999999999 8999999999998764  1         35788888899999999999999999984322 11  


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                         ....++.|..++.+++++.|+..++.+|++++......    ...++..+...+.++++.++..++++|+.+..  +
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~  158 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E  158 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence               12345667767568899999999999999997654322    23456667777888899999999999986641  1


Q ss_pred             hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940          225 DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI  304 (449)
Q Consensus       225 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  304 (449)
                               ..++.|+.++.++++.++..|+.+|+.+...++         .+++.|+..+.+. +..||..|+++|+.+
T Consensus       159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~  219 (280)
T PRK09687        159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence                     357899999999999999999999999943333         3567799999988 999999999999986


Q ss_pred             hcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHH
Q 039940          305 TAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCL  383 (449)
Q Consensus       305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~  383 (449)
                        +++         .+++.|++.+.+++  ++..++.+|+++..   ++         .++.|..+++ +.|+.++..+.
T Consensus       220 --~~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 --KDK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             --CCh---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence              233         37889999998765  67788999988864   22         6788888886 78999999999


Q ss_pred             HHHHH
Q 039940          384 KGLEN  388 (449)
Q Consensus       384 ~~l~~  388 (449)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            88763

>PRK09687 putative lyase; Provisional

Probab=99.69  E-value=1e-14  Score=126.85  Aligned_cols=258  Identities=13%  Similarity=0.094  Sum_probs=201.3

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      .+--.++.|.+.|.+++..++..|+..|..+-.            ..+++.+..++++++ +.++..|+++|+.+.....
T Consensus        20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~   86 (280)
T PRK09687         20 CKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKR   86 (280)
T ss_pred             HhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcc
Confidence            344557889999999999999999999987732            234677888899998 8999999999999875221


Q ss_pred             hhhHHHHhCCChHHHHHh-hCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940           99 VNTKVLIDHGAVPIFVKL-LASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN  177 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~  177 (449)
                       .     ....++.|..+ ++++++.+|..++.+|++++...+..     ....+..+...+ .+.+..|+..++++|..
T Consensus        87 -~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~  154 (280)
T PRK09687         87 -C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSV  154 (280)
T ss_pred             -c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhc
Confidence             1     12356888877 67789999999999999996443221     111333455555 67789999999999976


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      +..          ...++.|+.++.++++.++..++.+|+.+....+         ...+.|+..+.+.++.++..|++.
T Consensus       155 ~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~a  215 (280)
T PRK09687        155 IND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIG  215 (280)
T ss_pred             cCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHH
Confidence            543          3688999999999999999999999999843333         356788999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh-cCchhHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ-DAEFDIK  336 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~  336 (449)
                      |+.+-.           ..+++.|++.+.++ +  ++..++.+|+++..  +.         .+|.|..++. ..|..++
T Consensus       216 Lg~~~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~  270 (280)
T PRK09687        216 LALRKD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEII  270 (280)
T ss_pred             HHccCC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHH
Confidence            988632           24789999999977 4  78889999998833  32         6788889997 6699999


Q ss_pred             HHHHHHHHH
Q 039940          337 KEAAWAISN  345 (449)
Q Consensus       337 ~~a~~aL~~  345 (449)
                      ..|.+++..
T Consensus       271 ~~a~~a~~~  279 (280)
T PRK09687        271 TKAIDKLKR  279 (280)
T ss_pred             HHHHHHHhc
Confidence            999988764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=6.2e-13  Score=129.47  Aligned_cols=397  Identities=15%  Similarity=0.173  Sum_probs=275.3

Q ss_pred             hcHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           22 EILPAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        22 ~~i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ..-..++..+.++. +.++..-+..+..+++..-...|     .++++.|++..++++ +..|+.|+.+|..+...-...
T Consensus        79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~  152 (1075)
T KOG2171|consen   79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNT  152 (1075)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccc
Confidence            44456666666654 77888888888888766422222     355778888889999 899999999999988733222


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh-cCCHHHHHHHHc---ccccHHHHHHHHHHHH
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH-EEALIPLLAQLN---EHARLSMLRIGTWTLS  176 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~---~~~~~~~~~~a~~~l~  176 (449)
                      -...+ ..+.+.+.+.+.+++..+|..++++++.++...+..+..... ...+|.++..+.   +..|......++.++.
T Consensus       153 ~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~  231 (1075)
T KOG2171|consen  153 LQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI  231 (1075)
T ss_pred             cchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence            11111 134567777777777669999999999998655322222211 234666666653   3456667788888888


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHHH-------------------------
Q 039940          177 NLCKGKPQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQA-------------------------  229 (449)
Q Consensus       177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~-------------------------  229 (449)
                      .+....|..-......++........+.  +..+|..++.+|..+++..+...+.                         
T Consensus       232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew  311 (1075)
T KOG2171|consen  232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEW  311 (1075)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence            8888876655555667777777776654  5777888888777766553322110                         


Q ss_pred             --------------------HHH------------hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940          230 --------------------VIE------------AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA  277 (449)
Q Consensus       230 --------------------~~~------------~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  277 (449)
                                          .++            .-+++.+-.++.++++.-|..++.+|+.++.+..+.....+ ..+
T Consensus       312 ~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~I  390 (1075)
T KOG2171|consen  312 SNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKI  390 (1075)
T ss_pred             ccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHH
Confidence                                000            01234444556677888899999999999998877665544 358


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHH
Q 039940          278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIK  356 (449)
Q Consensus       278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~  356 (449)
                      ++.++..+.++ ++.||..|+.+++.++..-...++.-....+.+.|+..+.+. ++.++..|+.++-|++..+.++...
T Consensus       391 l~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~  469 (1075)
T KOG2171|consen  391 LPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE  469 (1075)
T ss_pred             HHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence            88899999999 999999999999999886545555555567888999998876 7899999999999999987666554


Q ss_pred             HHHHcCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHHH
Q 039940          357 YLVREGCIK-PLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGIR  434 (449)
Q Consensus       357 ~l~~~~~~~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i~  434 (449)
                      ...+ ++++ .+..+++++.+.+++.++.+|.......+..         -.+|...+     +..|... ++..+++.+
T Consensus       470 pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r  534 (1075)
T KOG2171|consen  470 PYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK---------FIPYFDRL-----MPLLKNFLQNADDKDLR  534 (1075)
T ss_pred             HHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh---------hHhHHHHH-----HHHHHHHHhCCCchhhH
Confidence            4333 3555 5555667888999999999999998877653         33455555     5666666 444547777


Q ss_pred             HHHHHHHH
Q 039940          435 EKAVTILE  442 (449)
Q Consensus       435 ~~a~~~i~  442 (449)
                      ...-+.++
T Consensus       535 ~LrgktmE  542 (1075)
T KOG2171|consen  535 ELRGKTME  542 (1075)
T ss_pred             HHHhhHHH
Confidence            66666554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.66  E-value=4.9e-14  Score=119.72  Aligned_cols=238  Identities=17%  Similarity=0.163  Sum_probs=187.5

Q ss_pred             hchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhH
Q 039940          191 RPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  269 (449)
Q Consensus       191 ~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  269 (449)
                      .+-++.++.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.. 
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~-   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ-   88 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence            5677889999985 58999999999999987554 45677888999999999999999999999999999998764433 


Q ss_pred             HHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940          270 QCVINHGAVPYLLALL-INNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK  348 (449)
Q Consensus       270 ~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~  348 (449)
                      ..+ +. .++.+.+.. .++.+..++..+..+|.|++..+.. ...+.  +.++.+++++..++..+|..++++|.|++.
T Consensus        89 ~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   89 EQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            333 32 455555544 4333778999999999999764322 22332  479999999999999999999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhccCC-CCCcccHHHHHHHhcc-hHHHHHHH
Q 039940          349 AGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEAKKNRGS-TIGDVNQYARLVEGAE-GFKKIEDL  425 (449)
Q Consensus       349 ~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~l  425 (449)
                        ++...+.++..+++..++.+++.. +.++...++..+.|+.+...+....-. .-.........|.+.+ .-++|..|
T Consensus       164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l  241 (254)
T PF04826_consen  164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL  241 (254)
T ss_pred             --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence              678899999999999999999875 678899999999999766655422110 0023344557888777 77899999


Q ss_pred             hcCCCHHHHHHH
Q 039940          426 KSHGNNGIREKA  437 (449)
Q Consensus       426 ~~~~~~~i~~~a  437 (449)
                      ..|++++|++++
T Consensus       242 ~~h~d~ev~~~v  253 (254)
T PF04826_consen  242 ANHPDPEVKEQV  253 (254)
T ss_pred             HcCCCHHHhhhc
Confidence            999999999875

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.1e-14  Score=129.96  Aligned_cols=349  Identities=14%  Similarity=0.131  Sum_probs=240.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC
Q 039940           28 VAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH  107 (449)
Q Consensus        28 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  107 (449)
                      ++.+...++-++...-..+..+++..+-..+     ..++|.|+.+|.+++ ...++-|..+|.++|.++.+.-+.-...
T Consensus        96 l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~  169 (885)
T KOG2023|consen   96 LHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLT  169 (885)
T ss_pred             HhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhccc
Confidence            4444444554444444445555554433334     346899999999999 6899999999999999776554432211


Q ss_pred             ----CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhc-CCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          108 ----GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHE-EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       108 ----~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                          -.+|.++++.+++++.+|..|+.++..+.-..+..  ....- ..+..+..+- .+.+++|+.+.|.++..|..-.
T Consensus       170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr  246 (885)
T KOG2023|consen  170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR  246 (885)
T ss_pred             CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence                36899999999999999999999998886544322  22111 2344444444 8899999999999999999988


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh--CcHHHHHHhhCCCC-------------
Q 039940          183 PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA--GVCGPLVELLGHPS-------------  247 (449)
Q Consensus       183 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~ll~~~~-------------  247 (449)
                      +.+......+++.+++...++.|.++...||.....++..+.. ...+..+  .++|.|+.-+...+             
T Consensus       247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~  325 (885)
T KOG2023|consen  247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE  325 (885)
T ss_pred             HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence            8877778889999999999999999999999999998877531 1212111  45666655443211             


Q ss_pred             -------------------------------------------CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940          248 -------------------------------------------PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL  284 (449)
Q Consensus       248 -------------------------------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  284 (449)
                                                                 +.+|+..+.+|.-++..-.+   .++. .++|.|-+.
T Consensus       326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~-~l~PlLk~~  401 (885)
T KOG2023|consen  326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLP-ILLPLLKEH  401 (885)
T ss_pred             cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHH-HHHHHHHHH
Confidence                                                       23444444444444322111   1111 245566666


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH-HHHHHcCC
Q 039940          285 LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI-KYLVREGC  363 (449)
Q Consensus       285 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~  363 (449)
                      |.+. +..+|+.+..+++.++.|.......-+- .++|.|+++|.++.+-||...||+|+..+..--.+.. ++|..  +
T Consensus       402 L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--v  477 (885)
T KOG2023|consen  402 LSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--V  477 (885)
T ss_pred             cCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--H
Confidence            6777 8899999999999999876543222111 3789999999999999999999999988765322222 33333  5


Q ss_pred             hHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          364 IKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       364 ~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      +..|.+.+-+.+.+|+++|+.++..+-+...
T Consensus       478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence            6667777778899999999999988876554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.5e-14  Score=132.04  Aligned_cols=353  Identities=16%  Similarity=0.174  Sum_probs=229.8

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE-VI---QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG   96 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~---~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~   96 (449)
                      .+.+|.+.++|.+++......|..+|.+++..+ .+..+. ..   -.-.+|.++++.++++ +.++..|+.++..+.-.
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~  204 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII  204 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence            578999999999999999999999999997543 111111 00   0235899999999998 99999999999887764


Q ss_pred             ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-hcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL-HEEALIPLLAQLNEHARLSMLRIGTWTL  175 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~l  175 (449)
                      .++....-+ ..++..+..+-+++++++|.+.+.++..+....|..  .+- -.+++...+... ++.|+++.-.||...
T Consensus       205 ~~qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~t-qd~dE~VALEACEFw  280 (885)
T KOG2023|consen  205 QTQALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRT-QDVDENVALEACEFW  280 (885)
T ss_pred             CcHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHc-cCcchhHHHHHHHHH
Confidence            333222111 245677777778899999999999999998665431  111 123444455444 778899999999999


Q ss_pred             HHhhcCCCCCC--hhhhhchHHHHHHhhcCCC------------------------------------------------
Q 039940          176 SNLCKGKPQPP--FDQVRPVLPALAQLIHLDD------------------------------------------------  205 (449)
Q Consensus       176 ~~l~~~~~~~~--~~~~~~~l~~l~~ll~~~~------------------------------------------------  205 (449)
                      ..++..+-...  ......++|.|+.-+.-++                                                
T Consensus       281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~  360 (885)
T KOG2023|consen  281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED  360 (885)
T ss_pred             HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence            99998861111  1223556666655433111                                                


Q ss_pred             --------HHHHHHHHHHHHHcccCChhHHHHHHHhCc----HHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940          206 --------EEVLRNVCWTLSNLSDGTNDKIQAVIEAGV----CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI  273 (449)
Q Consensus       206 --------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  273 (449)
                              .++|+....+|--++        .++...+    +|.|-..|.++++.+++.+..++|.++.+.-...-.-+
T Consensus       361 DDdD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L  432 (885)
T KOG2023|consen  361 DDDDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL  432 (885)
T ss_pred             ccccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch
Confidence                    112222222222221        1222233    45555556678899999999999999876422111111


Q ss_pred             hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC
Q 039940          274 NHGAVPYLLALLINNHKKSIKKESCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT  351 (449)
Q Consensus       274 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  351 (449)
                       ..+++.++.+|.++ .+-||+-+||+|+.++.  .+.+.-+.+.  .++..|++.+-+++.+|++.||.++..+-+...
T Consensus       433 -peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  433 -PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             -HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence             24789999999999 99999999999999875  1112212222  256667777777899999999999999988766


Q ss_pred             HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          352 QEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       352 ~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+.+.++-.  .+..|...+.....+-.....+++..+....
T Consensus       509 ~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv  548 (885)
T KOG2023|consen  509 EELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV  548 (885)
T ss_pred             chhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence            666665433  5566666665444443334444555555443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.65  E-value=1.5e-13  Score=139.96  Aligned_cols=277  Identities=19%  Similarity=0.192  Sum_probs=219.9

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      ....++.|++.|.++++.+|..|+..|..+..            .+.++.|+..|++++ ++++..|+..|..+....+ 
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~-  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP-  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC-
Confidence            34567899999999999999999999987732            235788999999888 8999999999988854111 


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                               ..+.+...|.++++.+|..++.+|..+....            ...++..+ .+.++.++..++.+|..+-
T Consensus       685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~  742 (897)
T PRK13800        685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVD  742 (897)
T ss_pred             ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhccc
Confidence                     2367888889999999999999999874221            23466677 8899999999999998752


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      .             .+.+..++.++++.++..++.+|..+.....         ..++.|..+++++++.+|..|+.+|+
T Consensus       743 ~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg  800 (897)
T PRK13800        743 D-------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALA  800 (897)
T ss_pred             C-------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            1             1346678889999999999999998865432         23678889999999999999999998


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA  339 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  339 (449)
                      .+... +         ...+.+...+.++ ++.||..|+++|+.+..  +         ..++.|+.++.+++..||..|
T Consensus       801 ~~g~~-~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        801 ELGCP-P---------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             hcCCc-c---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHH
Confidence            88542 1         1235688889988 99999999999997732  1         245899999999999999999


Q ss_pred             HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940          340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE  387 (449)
Q Consensus       340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~  387 (449)
                      +++|..+.  +++.         ..+.|...+++.|+.|+..+..+|.
T Consensus       859 ~~aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        859 VLALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            99999972  2333         3556678889999999999999886

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.62  E-value=9.8e-14  Score=117.86  Aligned_cols=196  Identities=21%  Similarity=0.267  Sum_probs=162.7

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc
Q 039940           62 IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG  141 (449)
Q Consensus        62 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  141 (449)
                      .+.+-++.|+.+|+...++.+++.|+.++++.+. .+.+++.+.+.|+++.+..++.++++.+++.|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            4566689999999987669999999999999887 789999999999999999999999999999999999999876543


Q ss_pred             hhhhHhhcCCHHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940          142 CRNLVLHEEALIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       142 ~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  220 (449)
                       +..+.  ..++.+++.... ..+.+++..++.+|.|++......  ......++.++.++.+++..++..++.+|.|++
T Consensus        88 -~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 -QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             -HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence             34442  246666665533 347889999999999998775332  223568999999999999999999999999999


Q ss_pred             cCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcC
Q 039940          221 DGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~  264 (449)
                      .++. ..+.++..+++..++.++..+ +.++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            7665 456688889999999999886 677899999999999644

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.58  E-value=2.4e-12  Score=131.22  Aligned_cols=276  Identities=17%  Similarity=0.186  Sum_probs=217.2

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940           64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      ...++.|+..|++++ +.++..|+..|+.+..           .+.++.|...|.++++.+|..|+.+|..+....+   
T Consensus       620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            345788999999999 9999999999998763           2468999999999999999999999998843221   


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                             ..+.+...+ ++.++.++..++.+|..+....           ...++..+.++|+.++..++.+|..+-.  
T Consensus       685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence                   123566677 6789999999999998865322           2356778899999999999999987521  


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940          224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN  303 (449)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  303 (449)
                                  .+.|..++.++++.+|..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|++
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~  801 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE  801 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence                        2346678999999999999999998865321         2367888999999 99999999999998


Q ss_pred             HhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 039940          304 ITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCL  383 (449)
Q Consensus       304 l~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~  383 (449)
                      +... +.         ..+.+...+.++++.||..|+.+|..+-..            ..++.|..+++++++.||..++
T Consensus       802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~  859 (897)
T PRK13800        802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV  859 (897)
T ss_pred             cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence            8432 11         235677889999999999999999887431            2468899999999999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940          384 KGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE  442 (449)
Q Consensus       384 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~  442 (449)
                      .+|..+ . .+.                     ...+.|....++++++|+..|.+.|+
T Consensus       860 ~aL~~~-~-~~~---------------------~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        860 LALTRW-P-GDP---------------------AARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHhcc-C-CCH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            999885 1 111                     11355677888999999999998876

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.53  E-value=6.8e-12  Score=122.29  Aligned_cols=330  Identities=19%  Similarity=0.208  Sum_probs=243.4

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      .+.+.+++++.+.+...+..+.-++..+....  +..-.+    +++.+.+=+.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            45677888888999999998888888886542  222222    3667777788988 8999999999999984  5655


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      +.+     ++.+.+++.++++.+|..|+.++.++....|..   +... .++.+.+++ .+.++.++..|+.++..+ ..
T Consensus       113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            544     688999999999999999999999998776553   2222 467788888 888899999999999999 22


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 039940          182 KPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI  261 (449)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l  261 (449)
                      .+..........+..+.+++...++..+..++..+..++...+.....   ..+++.+..++.+.++.+..+++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            211111344566777777778889999999999999999877654421   35778888888888889999999999887


Q ss_pred             hcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh-cCchhHHHHHH
Q 039940          262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ-DAEFDIKKEAA  340 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~a~  340 (449)
                      .....      .-..+++.|..++.++ ++.++..++..+..++...+...    .  .....+..+. +++..+|..++
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l  325 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKAL  325 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHH
Confidence            76432      2234788999999988 99999999999999987653322    2  2222233444 77899999999


Q ss_pred             HHHHHhhccCCHHHHHHHHHcCChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          341 WAISNATKAGTQEQIKYLVREGCIKPLCDLL-LCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       341 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      ..+..++.   +...+.     +++.|...+ ...+++++..++..+..++.....
T Consensus       326 ~lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  326 DLLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             HHHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred             HHHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence            99999985   345444     466677777 445788888888888888876654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.53  E-value=4.6e-11  Score=108.29  Aligned_cols=322  Identities=15%  Similarity=0.176  Sum_probs=232.7

Q ss_pred             CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhc-----CCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          108 GAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHE-----EALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       108 ~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      ..+..++.+++. .++++.+..+..+.-+....|.....+.+.     ....+++.++ ...|.-+...++.++..+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            456677777764 568888889999999988887666655543     4567788877 567888999999999999877


Q ss_pred             CCCCCh-hhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHH
Q 039940          182 KPQPPF-DQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP--SPSVLIPALRT  257 (449)
Q Consensus       182 ~~~~~~-~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~  257 (449)
                      .+.... ......++.+...+.++ +...+..++.++..+...++-+ ..+.+.++++.|+.+|+..  +..+...++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            643222 12233455666666654 4777778889999998877654 5577778999999999763  44788889999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHCCChHHHHHHhhcC
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN------RKQIQAVIDAGLIVPLVNLLQDA  331 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~------~~~~~~l~~~~~~~~L~~ll~~~  331 (449)
                      ++-++... +........++++.++.+++.....++-+-+..++.|+...+      ......++..|+.+.+-.+...+
T Consensus       211 lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            99998764 355555678999999999988767888999999999998732      22344566777776665555443


Q ss_pred             --chhHHHHHHHH-------HHHhhcc---------C---------C----HHHHHHHHHcC--ChHHHHhhcc-CCCHH
Q 039940          332 --EFDIKKEAAWA-------ISNATKA---------G---------T----QEQIKYLVREG--CIKPLCDLLL-CADPE  377 (449)
Q Consensus       332 --~~~v~~~a~~a-------L~~l~~~---------~---------~----~~~~~~l~~~~--~~~~L~~ll~-~~~~~  377 (449)
                        |+++.+..-..       +..++..         |         +    .++...|.+++  ++..|..++. +.|+.
T Consensus       290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence              55544322211       1111110         0         1    23455666544  4788999985 56788


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       378 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      +...|+.=+..+++..+..             ...+.+.|+.+.+.+|+.|+|++|+..|...++++.
T Consensus       370 ~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         370 ILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             eeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8888999999999887653             567789999999999999999999999999988764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.52  E-value=4.1e-13  Score=102.97  Aligned_cols=118  Identities=33%  Similarity=0.488  Sum_probs=110.2

Q ss_pred             HHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 039940          230 VIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR  309 (449)
Q Consensus       230 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  309 (449)
                      +.+.|+++.++.++.++++.++..+++++++++..++.....+.+.++++.+.+++.++ ++.++..++|+|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999999888888889999999999999998 99999999999999999887


Q ss_pred             HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940          310 KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK  348 (449)
Q Consensus       310 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~  348 (449)
                      .....+.+.|+++.+++.+...+.++++.++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            777788899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.51  E-value=6e-13  Score=102.04  Aligned_cols=119  Identities=34%  Similarity=0.548  Sum_probs=110.0

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC
Q 039940           60 EVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS  139 (449)
Q Consensus        60 ~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  139 (449)
                      .+++.|+++.+++++.+++ .+++..++++|.+++..+++....+.+.|+++.+++++.++++.++..++++|++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3568899999999999998 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          140 PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       140 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      +.....+...|.++.+++.+ ++.+..+++.++|++.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77778888889999999999 66689999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.49  E-value=8.7e-11  Score=114.57  Aligned_cols=356  Identities=17%  Similarity=0.187  Sum_probs=250.4

Q ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           25 PAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        25 ~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      ..+.+.+.+.  +...+..++..+..+.... .+.      ..+.+.+++++.+.+ ...+.-+--.+..+...+++...
T Consensus         7 ~el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~   78 (526)
T PF01602_consen    7 QELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLI   78 (526)
T ss_dssp             HHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHH
Confidence            3455556555  7777777776665553322 221      256888999999887 89999999999999987776333


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      .     +++.+.+-+.++++.++..|++++++++  .++..+     ..++.+.+.+ .++++.+++.|+.++..+....
T Consensus        79 l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~  145 (526)
T PF01602_consen   79 L-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKD  145 (526)
T ss_dssp             H-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHC
T ss_pred             H-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccC
Confidence            2     3688888899999999999999999996  223222     2456677777 7889999999999999999875


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 039940          183 PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV  262 (449)
Q Consensus       183 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~  262 (449)
                      |...  ... .++.+..++.++|+.++..++.++..+ ..++.....+. ...+..+..++...++-.+..++.++..++
T Consensus       146 p~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  146 PDLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             HCCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             HHHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence            4321  112 689999999999999999999999999 33332211122 245666777778888989999999999888


Q ss_pred             cCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHH
Q 039940          263 TGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWA  342 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~a  342 (449)
                      ...+.....   ..+++.+..++.+. ++.|..+++.++..+... +.     .-..+++.|..++.++++.++..++.+
T Consensus       221 ~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~  290 (526)
T PF01602_consen  221 PMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDS  290 (526)
T ss_dssp             SSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             cCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHH
Confidence            765554421   35788888899888 999999999999988653 33     222478899999998899999999999


Q ss_pred             HHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHH
Q 039940          343 ISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKK  421 (449)
Q Consensus       343 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (449)
                      |..++... +...    .  ........+. ++|..++..++.+|..++....-              ..      .++.
T Consensus       291 L~~l~~~~-~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~--------------~~------Il~e  343 (526)
T PF01602_consen  291 LSQLAQSN-PPAV----F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV--------------KE------ILDE  343 (526)
T ss_dssp             HHHHCCHC-HHHH----G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH--------------HH------HHHH
T ss_pred             HHHhhccc-chhh----h--hhhhhhheecCCCChhHHHHHHHHHhhcccccch--------------hh------HHHH
Confidence            99999863 2221    1  2233333444 78899999999999999864432              11      1333


Q ss_pred             HHHHh-cCCCHHHHHHHHHHHHH
Q 039940          422 IEDLK-SHGNNGIREKAVTILET  443 (449)
Q Consensus       422 l~~l~-~~~~~~i~~~a~~~i~~  443 (449)
                      |.... +..+++++..+.+.|..
T Consensus       344 L~~~l~~~~d~~~~~~~i~~I~~  366 (526)
T PF01602_consen  344 LLKYLSELSDPDFRRELIKAIGD  366 (526)
T ss_dssp             HHHHHHHC--HHHHHHHHHHHHH
T ss_pred             HHHHHHhccchhhhhhHHHHHHH
Confidence            44444 44466666666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.48  E-value=9.7e-10  Score=107.52  Aligned_cols=293  Identities=12%  Similarity=0.095  Sum_probs=183.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV  146 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  146 (449)
                      ++.+.+=+.+++ +.++..|++.++++-.  ++....     +++.+.+.+.+.++.||..|+.++.++...+|+   .+
T Consensus       107 INtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv  175 (746)
T PTZ00429        107 VNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF  175 (746)
T ss_pred             HHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc
Confidence            444555555666 6777777776666654  333222     246667777788888888888888888766554   33


Q ss_pred             hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH
Q 039940          147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK  226 (449)
Q Consensus       147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  226 (449)
                      .+.+.++.+.+++ .+.++.|+.+|+.+|..+....+. ........+..++..+..-++..+..++.++......++..
T Consensus       176 ~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e  253 (746)
T PTZ00429        176 YQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES  253 (746)
T ss_pred             cccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH
Confidence            4556777777776 788888999999988888776543 23344555666666666667777878887776533222211


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940          227 IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       227 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  305 (449)
                      .     ..++..+...+++.++.|...|++++.++.... +....... ..+-..++.++ ++ +++++.-+...+.-++
T Consensus       254 ~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        254 A-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALL  325 (746)
T ss_pred             H-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHH
Confidence            1     256788888899999999999999999887542 22222221 12335566664 45 6788888888887776


Q ss_pred             cCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940          306 AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG  385 (449)
Q Consensus       306 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~  385 (449)
                      ...+.....     -+..+.-..++ ...++...+..|..++..   ++...     ++.-|.....+.|.+++..++.+
T Consensus       326 ~~~P~lf~~-----~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane---~Nv~~-----IL~EL~eYa~d~D~ef~r~aIrA  391 (746)
T PTZ00429        326 VIFPNLLRT-----NLDSFYVRYSD-PPFVKLEKLRLLLKLVTP---SVAPE-----ILKELAEYASGVDMVFVVEVVRA  391 (746)
T ss_pred             HHCHHHHHH-----HHHhhhcccCC-cHHHHHHHHHHHHHHcCc---ccHHH-----HHHHHHHHhhcCCHHHHHHHHHH
Confidence            655543221     12233222233 334677777777777653   33333     23445555556666777777777


Q ss_pred             HHHHHHhhh
Q 039940          386 LENILKVGE  394 (449)
Q Consensus       386 l~~l~~~~~  394 (449)
                      +.++....+
T Consensus       392 Ig~lA~k~~  400 (746)
T PTZ00429        392 IASLAIKVD  400 (746)
T ss_pred             HHHHHHhCh
Confidence            777665443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=5.7e-11  Score=111.90  Aligned_cols=343  Identities=15%  Similarity=0.169  Sum_probs=250.7

Q ss_pred             hcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           22 EILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        22 ~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ..+|.|+.+|+. .+.++...|+++|..++.-- ......+++.+.||.|++-|..-.+.++.++++.+|-.|+..   .
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H  286 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---H  286 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---c
Confidence            457888888886 46999999999999997654 566777889999999998887766689999999999999984   3


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      -..+.+.|++...+.++.--+..++..|+.+..|.|..- ++--+.+++  .+|.|..++ +..|....+.++-|+..++
T Consensus       287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence            456788999999999998888999999999999999532 232334433  677777777 8888899999999999988


Q ss_pred             cCCCC-C---ChhhhhchHHHHHHhhcCC----CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC---
Q 039940          180 KGKPQ-P---PFDQVRPVLPALAQLIHLD----DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP---  248 (449)
Q Consensus       180 ~~~~~-~---~~~~~~~~l~~l~~ll~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~---  248 (449)
                      ..... .   +.....+.+.-+.+++...    +..+....++.+..++.+.+.....+.+.++...+..+|.....   
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n  443 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN  443 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence            77622 2   1222367777777777644    24456667777888888877777777777888888877754210   


Q ss_pred             ----c--ch------hhH---------------------------------------------------HHHHHHh----
Q 039940          249 ----S--VL------IPA---------------------------------------------------LRTVGNI----  261 (449)
Q Consensus       249 ----~--v~------~~a---------------------------------------------------~~~l~~l----  261 (449)
                          +  .+      +..                                                   .+.+..+    
T Consensus       444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~  523 (1051)
T KOG0168|consen  444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT  523 (1051)
T ss_pred             cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence                0  00      000                                                   0011100    


Q ss_pred             ------------------hcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-CCCh
Q 039940          262 ------------------VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVID-AGLI  321 (449)
Q Consensus       262 ------------------~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~~  321 (449)
                                        ....++..+.+. ..+++.|+++..+..++.||..+..+|..+.. .+.+.+..++. ..+-
T Consensus       524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS  602 (1051)
T KOG0168|consen  524 GTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS  602 (1051)
T ss_pred             ccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence                              000011112222 24788889998887799999999999999986 67777877774 5677


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc
Q 039940          322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL  372 (449)
Q Consensus       322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~  372 (449)
                      ..+-.+|..++..+..-|+...--++..-..-+-..|.++|++..+.++..
T Consensus       603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            788888999898888888877777777655556778888999988888876

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.44  E-value=1.4e-10  Score=105.19  Aligned_cols=325  Identities=13%  Similarity=0.113  Sum_probs=228.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC-----CChHHHHHhhCCCChHHHHHHHHHHHHHhcCC
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH-----GAVPIFVKLLASPSDDVREQAVWALGNIVAHS  139 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  139 (449)
                      .....++.++.....+++....+..+..+...++.....+.+.     .....++.+|..++.-+...++.++..+...+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            4577788888877668999999999999998777777777654     46778888999999999999999999998765


Q ss_pred             CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHH
Q 039940          140 PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLS  217 (449)
Q Consensus       140 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~  217 (449)
                      +.........-....+...+....+...+..++.++..+.+.++.+......++++.|..+++..  +..++..++.|+.
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            43211111111233444555333457778888899999998876555444566899999999753  5688899999999


Q ss_pred             HcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCC------hhhHHHHHhcCCHHHHHHHhccCC-
Q 039940          218 NLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGD------DFQTQCVINHGAVPYLLALLINNH-  289 (449)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~-  289 (449)
                      -++...+ ......+.++++.++.+++.. .+.+..-++.++.|+...+      ......+++.|+++.+-.+...+- 
T Consensus       213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            9887655 445566679999999999874 5668888999999998743      123334556666555544443321 


Q ss_pred             chhHHHHHHHHHH-------HHhc------------------C-C----HHHHHHHHHC--CChHHHHHHhh-cCchhHH
Q 039940          290 KKSIKKESCWTVS-------NITA------------------G-N----RKQIQAVIDA--GLIVPLVNLLQ-DAEFDIK  336 (449)
Q Consensus       290 ~~~v~~~a~~~l~-------nl~~------------------~-~----~~~~~~l~~~--~~~~~L~~ll~-~~~~~v~  336 (449)
                      |+++....-..-.       .++.                  | +    .++...+-+.  .++..|++++. +.++.+.
T Consensus       292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l  371 (429)
T cd00256         292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL  371 (429)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee
Confidence            4444332211111       1110                  1 1    1222333332  25788999985 4488889


Q ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940          337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK  391 (449)
Q Consensus       337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~  391 (449)
                      ..||.=++.++.+. |..+..+-+-|+=..++.++.++|++++..|+.++..++-
T Consensus       372 aVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         372 AVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             ehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999984 6666666678999999999999999999999999998864

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=7.2e-10  Score=103.60  Aligned_cols=369  Identities=17%  Similarity=0.179  Sum_probs=245.7

Q ss_pred             hhcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           21 LEILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        21 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      -.++..+++..+++  +..+|+.|+.+|.+.+...+...-.+.-.+=++...++.-++++ .+++..|+.||..+..-.-
T Consensus       171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY  249 (859)
T KOG1241|consen  171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYY  249 (859)
T ss_pred             hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHH
Confidence            45677788888764  57899999999998876543333444445556677778888888 8999999999999998767


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC---------------C-chhhhH--hhcCCHHHHHHHHc
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS---------------P-GCRNLV--LHEEALIPLLAQLN  160 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~---------------~-~~~~~~--~~~~~i~~l~~~l~  160 (449)
                      +.....+....+..-+..+.++++++.-+++...+++|...               | ....+.  .-.+.+|.|++.|.
T Consensus       250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~  329 (859)
T KOG1241|consen  250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT  329 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence            77777777778888888899999999999999999998421               1 111111  01245777788775


Q ss_pred             c-cc-----cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhC
Q 039940          161 E-HA-----RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAG  234 (449)
Q Consensus       161 ~-~~-----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  234 (449)
                      + ++     +-..-..|..||.-++..-.+   ..+..++|++-.-++++|..-+..+..+++.+-.+.+.....-+-.+
T Consensus       330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q  406 (859)
T KOG1241|consen  330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ  406 (859)
T ss_pred             hCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence            4 22     122333444444333332111   23347888888888999999999999999999988765554445558


Q ss_pred             cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH-HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 039940          235 VCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ  313 (449)
Q Consensus       235 ~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~  313 (449)
                      .++.++.++.++.-.++..+.|+++.++...++.+. .......++.++..|.+  .|.+...+||++.+++.+.++...
T Consensus       407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~  484 (859)
T KOG1241|consen  407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAV  484 (859)
T ss_pred             hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhcc
Confidence            899999999988888999999999999987654322 23345567777777775  478999999999999853222111


Q ss_pred             HH-----HH---CCChHHHHHHhhc---CchhHHHHHHHHHHHhhccCCHHHHHHHHHc--CChHHHHhhcc-----CCC
Q 039940          314 AV-----ID---AGLIVPLVNLLQD---AEFDIKKEAAWAISNATKAGTQEQIKYLVRE--GCIKPLCDLLL-----CAD  375 (449)
Q Consensus       314 ~l-----~~---~~~~~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~~~~L~~ll~-----~~~  375 (449)
                      .-     ..   ..++..|+...+.   .+...|..|..+|..++....++....+.+.  -.+..|-..++     ..|
T Consensus       485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~d  564 (859)
T KOG1241|consen  485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLAD  564 (859)
T ss_pred             CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            00     00   0123334433333   3578999999999999998655544433221  12233333332     222


Q ss_pred             H----HHHHHHHHHHHHHHHhhhh
Q 039940          376 P----EIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       376 ~----~~~~~~~~~l~~l~~~~~~  395 (449)
                      .    +++...+..|..+.+....
T Consensus       565 r~q~~eLQs~Lc~~Lq~i~rk~~~  588 (859)
T KOG1241|consen  565 RAQLNELQSLLCNTLQSIIRKVGS  588 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccc
Confidence            2    3445556666666655544

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=4.4e-10  Score=105.01  Aligned_cols=361  Identities=13%  Similarity=0.074  Sum_probs=231.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940           25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL  104 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  104 (449)
                      ..+++.|.+..+...-.|+.++..+++-+ -+.-   .-.++++.|+..........+++.++.+++.+|.+-......-
T Consensus        93 ~~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~  168 (859)
T KOG1241|consen   93 NNILRTLGSPEPRRPSSAAQCVAAIACIE-LPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQ  168 (859)
T ss_pred             HHHHHHcCCCCCCccchHHHHHHHHHHhh-Cchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHH
Confidence            34556666666766677777777776653 1111   1123455666666665534689999999999998432222222


Q ss_pred             HhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHH-HHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          105 IDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALI-PLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       105 ~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      ....++..++..+..  ++..+|-.|+.+|.|-..... .+... .+.+.+. ..++.- +++|.+++..|..||..+..
T Consensus       169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~  246 (859)
T KOG1241|consen  169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMS  246 (859)
T ss_pred             HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHH
Confidence            223677888887764  678999999999998653222 11111 1223322 233333 78899999999999998876


Q ss_pred             CCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH---------------HHHHHH---hCcHHHHHH
Q 039940          181 GKPQPPF-DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK---------------IQAVIE---AGVCGPLVE  241 (449)
Q Consensus       181 ~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~---------------~~~~~~---~~~~~~L~~  241 (449)
                      -...... -+....++.-+..++++++++...++..-+++|...-+.               ...+..   .+++|.|+.
T Consensus       247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~  326 (859)
T KOG1241|consen  247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE  326 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence            5422211 122345566666777889999999998888887543220               011111   156788888


Q ss_pred             hhCC-------CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 039940          242 LLGH-------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQA  314 (449)
Q Consensus       242 ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  314 (449)
                      +|..       +++.....|-.||.-++....+.   ++. .+++.+-+-++++ +..-|..|+.+++.+..+.......
T Consensus       327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt  401 (859)
T KOG1241|consen  327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLT  401 (859)
T ss_pred             HHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhh
Confidence            8864       34667777777777665432221   222 4677777788888 9999999999999998764444434


Q ss_pred             HHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          315 VIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       315 l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      -+..+.+|.++.++.+++..++..+.|+++.++................+..+..-+ ...|.+-.+++|++.+|.+...
T Consensus       402 ~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~  480 (859)
T KOG1241|consen  402 PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAY  480 (859)
T ss_pred             HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHH
Confidence            444589999999999889999999999999999874211111111122333333333 2567888999999999997665


Q ss_pred             hhh
Q 039940          395 AKK  397 (449)
Q Consensus       395 ~~~  397 (449)
                      +..
T Consensus       481 eA~  483 (859)
T KOG1241|consen  481 EAA  483 (859)
T ss_pred             Hhc
Confidence            544

>PTZ00429 beta-adaptin; Provisional

Probab=99.37  E-value=8.6e-09  Score=101.00  Aligned_cols=331  Identities=14%  Similarity=0.062  Sum_probs=227.4

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHH-HHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFR-RLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      +.|-+..+.+.|.+.+...+..|++.+. .+..|  .+..      .+++.+++++.+++ .+++.-+...+.+++...+
T Consensus        30 ~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~p  100 (746)
T PTZ00429         30 RRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMG--RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQP  100 (746)
T ss_pred             ccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCh
Confidence            3456778888888888888888876554 44444  2222      24677888899888 8999999999999988666


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      +..-.     .++.+.+=+.++|+.+|..|+++++++-.  +...+     -.+..+.+.+ .+.++.|++.|+.++.++
T Consensus       101 elalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L-~D~~pYVRKtAalai~Kl  167 (746)
T PTZ00429        101 EKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAV-ADPDPYVRKTAAMGLGKL  167 (746)
T ss_pred             HHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            54322     37888888999999999999999998732  12211     2344566666 788999999999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ....|.  .....+.++.+..++.+.|+.+..+++.++..+....+....  ...+.+..++..+..-++-.+...+.+|
T Consensus       168 y~~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL  243 (746)
T PTZ00429        168 FHDDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELL  243 (746)
T ss_pred             HhhCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            887653  223356788899999999999999999999999866554322  2234566677777666665666666666


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKK  337 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  337 (449)
                      ....-.++..   .  ..++..+...+++. ++.|.-+|+.++.++... +++....+.. .+.+.++.++ +++++++-
T Consensus       244 ~~y~P~~~~e---~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqy  315 (746)
T PTZ00429        244 AAQRPSDKES---A--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQY  315 (746)
T ss_pred             HhcCCCCcHH---H--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHH
Confidence            4432221211   1  24677888889998 999999999999999753 3343333322 2345666664 56789999


Q ss_pred             HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940          338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK  391 (449)
Q Consensus       338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~  391 (449)
                      .++..+.-++.. .+.    ++.. -++.+.-..++ ...++...+++|..++.
T Consensus       316 vaLr~I~~i~~~-~P~----lf~~-~~~~Ff~~~~D-p~yIK~~KLeIL~~Lan  362 (746)
T PTZ00429        316 IVCKNIHALLVI-FPN----LLRT-NLDSFYVRYSD-PPFVKLEKLRLLLKLVT  362 (746)
T ss_pred             HHHHHHHHHHHH-CHH----HHHH-HHHhhhcccCC-cHHHHHHHHHHHHHHcC
Confidence            999888777764 332    2222 13333333333 33578888888887763

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=7.5e-10  Score=95.62  Aligned_cols=190  Identities=19%  Similarity=0.247  Sum_probs=161.2

Q ss_pred             CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHH
Q 039940          204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLA  283 (449)
Q Consensus       204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  283 (449)
                      .+.+-+..++.-|..++.+-+ +...+.+.|++..++..+.+++..+|..|+++++-.+.+++...+.+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            356667777777777775544 3455888899999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--CchhHHHHHHHHHHHhhccCCHHHHHHHHHc
Q 039940          284 LLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD--AEFDIKKEAAWAISNATKAGTQEQIKYLVRE  361 (449)
Q Consensus       284 ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  361 (449)
                      ++.+..+..+|..|.++++.+.++++.....+...++...|.+.+.+  .+...+..++..+..+... .......+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHh
Confidence            99977567788999999999999999999999998899999999998  5788899999999999886 44444555567


Q ss_pred             CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          362 GCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       362 ~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      ++...+..+....+.++.+.++.++..+......
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            7788888888888889999988888777765544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=6.3e-08  Score=91.28  Aligned_cols=325  Identities=14%  Similarity=0.132  Sum_probs=240.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCC---
Q 039940           66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSP---  140 (449)
Q Consensus        66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~---  140 (449)
                      -++.|++-..+..-.+-|..|++.|..++.   .+|..+... +++.|++.|..  .|+++...++.++.++.....   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            378888877776557889999999999886   466666555 48999999975  578999999999999986442   


Q ss_pred             ---ch----------hh-hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhcC
Q 039940          141 ---GC----------RN-LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF---DQVRPVLPALAQLIHL  203 (449)
Q Consensus       141 ---~~----------~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~ll~~  203 (449)
                         ..          .+ ++...+.+..++..+ ...|-.|+.++...+.++.+..|....   .....++..++.+|++
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               11          11 223445666777777 677889999999999999988754322   2337889999999999


Q ss_pred             CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC---C-CcchhhHHHHHHHhhcCChhhHHHHHhcCCHH
Q 039940          204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP---S-PSVLIPALRTVGNIVTGDDFQTQCVINHGAVP  279 (449)
Q Consensus       204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  279 (449)
                      ....+|..++..|..+...++...+.+.-.++++.|+.++...   + .-|...++..+.|+...+....+.+.+.+.++
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999998887666666668999999999763   2 34788899999999999888888889999999


Q ss_pred             HHHHHhccCC--ch--------hH--HHHHHHHHHHHhc-CCH-----HHHHHHHHCCChHHHHHHhhcC--chhHHHHH
Q 039940          280 YLLALLINNH--KK--------SI--KKESCWTVSNITA-GNR-----KQIQAVIDAGLIVPLVNLLQDA--EFDIKKEA  339 (449)
Q Consensus       280 ~L~~ll~~~~--~~--------~v--~~~a~~~l~nl~~-~~~-----~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a  339 (449)
                      .|.++|....  +.        ++  ...+..++..+.. ++.     .+.+.+...+++..|+.++.++  ..+++..+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998885321  21        11  2235566666654 322     2223556789999999998776  67899999


Q ss_pred             HHHHHHhhccCCHHHHHHHHHcC----------ChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhh
Q 039940          340 AWAISNATKAGTQEQIKYLVREG----------CIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       340 ~~aL~~l~~~~~~~~~~~l~~~~----------~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      ..++++++.+ +......|.+..          .+-.++.+..+. ....|..++.++..++...+..
T Consensus       338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            9999999987 455555555421          122344444544 4568899999999888766654

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.23  E-value=2.9e-10  Score=105.80  Aligned_cols=346  Identities=15%  Similarity=0.123  Sum_probs=220.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHhcCCChhhh
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY-PRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      .+..++.-++++.+..+..++....+....-+......-.....+..++-.++.++. ..+.......+.+-...    +
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~----r  792 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG----R  792 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----c
Confidence            355566666777777777777777666543322222222233344444444544331 23333344444333321    0


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh--hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR--NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      -.-.-..++..++..|++.++.+|++|+..++.++..-..+.  +.+...|.  .|.+.+ ...++++.-..+.++..++
T Consensus       793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence            001111345677778899999999999999999874222221  12222232  245555 6678999888888777766


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          180 KGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       180 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ... -.....-..+++|.|..+|++...+++.+++..++.++...++....---..+.--|+.+|+..+.++|..|...+
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            554 1222333478999999999999999999999999999988776433222224455677788888999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE  338 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  338 (449)
                      +.++..       +....++..|+.-|+.. +...|....-+++-.+..+..       -.++|.|++-...++..|+.-
T Consensus       950 G~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen  950 GYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred             hHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHh
Confidence            999764       22234666777777766 555555444455544432211       137788887777788999999


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          339 AAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       339 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      .+.+++.+.........+++..  +.+.|.+.+.+.|.--+..+..++..+.-.
T Consensus      1015 VLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            9999999987643333444443  677788888888888888888777766543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.23  E-value=1.7e-08  Score=88.57  Aligned_cols=326  Identities=13%  Similarity=0.099  Sum_probs=227.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHh------CCChHHHHHhhCCCChHHHHHHHHHHHHHhcC
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLID------HGAVPIFVKLLASPSDDVREQAVWALGNIVAH  138 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  138 (449)
                      ..+..++.++...+.++....++..+..+...+......+..      .-.-..++.+|...+.-+.+...++++.++..
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence            346778888888766788888888888888755444333322      13367788999999999999899999999865


Q ss_pred             CCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHH
Q 039940          139 SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL--DDEEVLRNVCWTL  216 (449)
Q Consensus       139 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l  216 (449)
                      .+.......-.-....+-..+.++.++.....+.+||..+...++-+.......++..++..+.+  .+-.++...+.|+
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            43321110000012344455545577788888999999999987555555556777777777733  3688899999999


Q ss_pred             HHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCCh------hhHHHHHhcCCHHHHHHHhccCC
Q 039940          217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGDD------FQTQCVINHGAVPYLLALLINNH  289 (449)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~ll~~~~  289 (449)
                      .-++.+++- .+.+...+.++.|..+++.. .+.|..-++.++.|++...+      ......+..++.+.+-.+-..+.
T Consensus       225 WlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky  303 (442)
T KOG2759|consen  225 WLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY  303 (442)
T ss_pred             HHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence            998876654 46667779999999999874 56688889999999988763      33344556666666555554332


Q ss_pred             -chhHHHHHHHHHHHHh-------c----------C----C---------HHHHHHHHH--CCChHHHHHHhhcC-chhH
Q 039940          290 -KKSIKKESCWTVSNIT-------A----------G----N---------RKQIQAVID--AGLIVPLVNLLQDA-EFDI  335 (449)
Q Consensus       290 -~~~v~~~a~~~l~nl~-------~----------~----~---------~~~~~~l~~--~~~~~~L~~ll~~~-~~~v  335 (449)
                       |+++....-+.-..+-       +          |    +         .++...+-+  ..++..|+.+|... +|.+
T Consensus       304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence             4433333222111111       1          0    0         122333333  23688999999877 6889


Q ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      ...||.-++..+.+ -|+....+.+-|+=+.++++++++|++|+..|+.++..++-.
T Consensus       384 L~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  384 LCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             eehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            99999999999998 677778778889999999999999999999999999988753

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.22  E-value=2.9e-09  Score=93.29  Aligned_cols=304  Identities=13%  Similarity=0.097  Sum_probs=209.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcH---HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPI---DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .+..+.+|..++..+...+.+.+..+++... ...   ..-+.   ...+-..+++....+....|++||..+.. -++.
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~-~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~ey  190 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGN-CKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEY  190 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhcc-ccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccch
Confidence            5677888999999888888999999887542 211   11111   23344455553336788889999999998 6889


Q ss_pred             hHHHHhCCChHHHHHhhC-C-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          101 TKVLIDHGAVPIFVKLLA-S-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~-~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      |..+...+++..++..+. + .+-.++.+.+.+++.++...+.. +.+...+.++.+...+..+..+.|.+.++.++.|+
T Consensus       191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl  269 (442)
T KOG2759|consen  191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL  269 (442)
T ss_pred             hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988999999883 2 56789999999999997765544 55677888999999998888999999999999999


Q ss_pred             hcCCCCCChh------hhhchHHHHHHhhcC---CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcH-HHHHHhhC---C
Q 039940          179 CKGKPQPPFD------QVRPVLPALAQLIHL---DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVC-GPLVELLG---H  245 (449)
Q Consensus       179 ~~~~~~~~~~------~~~~~l~~l~~ll~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~L~~ll~---~  245 (449)
                      +...+.....      +...-++..++.|..   +|+++....-..-..+-    +..+.+.   -. +..-.+..   +
T Consensus       270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~----~svq~Ls---SFDeY~sEl~sG~L~  342 (442)
T KOG2759|consen  270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK----NSVQDLS---SFDEYKSELRSGRLE  342 (442)
T ss_pred             hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH----HHHHhhc---cHHHHHHHHHhCCcC
Confidence            9987543322      223333444444443   35666554332222221    1111110   01 11111111   1


Q ss_pred             CCCcchhhHHHHHHHhhcCChhhHHHHH--hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940          246 PSPSVLIPALRTVGNIVTGDDFQTQCVI--NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP  323 (449)
Q Consensus       246 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  323 (449)
                      -+|.-+.+-.|         .++...+-  +..++..|+++|+.+.||.+..-||.=++.+.++.|+....+.+.|+=..
T Consensus       343 WSP~Hk~e~FW---------~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~  413 (442)
T KOG2759|consen  343 WSPVHKSEKFW---------RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKER  413 (442)
T ss_pred             CCccccccchH---------HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHH
Confidence            12222322222         11122222  23478899999998867989999999999999999999988889999999


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          324 LVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       324 L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      ++++++.+|++||.+|+.|+..+..+
T Consensus       414 vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  414 VMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            99999999999999999999888754

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=7.6e-08  Score=90.74  Aligned_cols=326  Identities=17%  Similarity=0.193  Sum_probs=240.7

Q ss_pred             HhhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHhcCC
Q 039940           19 TKLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYPRLQFEAAWVLTNIASG   96 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~   96 (449)
                      ...+.|+.|+..+.+. -.+-|..|++.|..++.    ..+..+. ..+++.+++.|+.+ .++++...++..+.++...
T Consensus        19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~   93 (970)
T KOG0946|consen   19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH   93 (970)
T ss_pred             cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence            3478899999999764 48889999999998863    3344444 45588888888764 3489999999999999874


Q ss_pred             Ch------hh----------hHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhc-CCHHHHHH
Q 039940           97 TS------VN----------TKVLI-DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHE-EALIPLLA  157 (449)
Q Consensus        97 ~~------~~----------~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~-~~i~~l~~  157 (449)
                      ++      +.          .+.++ ..+.|..++..+...|-.+|..++..+.++.... ++.++.+... .++..++.
T Consensus        94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence            42      11          12233 4588999999999999999999999999998655 4566665543 46889999


Q ss_pred             HHcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCC---C-HHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940          158 QLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQLIHLD---D-EEVLRNVCWTLSNLSDGTNDKIQAVIE  232 (449)
Q Consensus       158 ~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~---~-~~~~~~~~~~l~~l~~~~~~~~~~~~~  232 (449)
                      ++ .+.-+.++..++..|..++++.+... ....+++...|..++...   | .-|...++..+.|+..++..+...+.+
T Consensus       174 lL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE  252 (970)
T KOG0946|consen  174 LL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE  252 (970)
T ss_pred             HH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence            99 67778889999999999999985554 444588999999999853   3 357889999999999998888888999


Q ss_pred             hCcHHHHHHhhCC---CC-----Ccch-----hhHHHHHHHhhcCC-h-----hhHHHHHhcCCHHHHHHHhccC-Cchh
Q 039940          233 AGVCGPLVELLGH---PS-----PSVL-----IPALRTVGNIVTGD-D-----FQTQCVINHGAVPYLLALLINN-HKKS  292 (449)
Q Consensus       233 ~~~~~~L~~ll~~---~~-----~~v~-----~~a~~~l~~l~~~~-~-----~~~~~~~~~~~l~~L~~ll~~~-~~~~  292 (449)
                      .+.+|.|..+|..   .+     |..+     ..++.++.-+.... .     .....+...+++..|..++.++ -..+
T Consensus       253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~d  332 (970)
T KOG0946|consen  253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPAD  332 (970)
T ss_pred             cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHh
Confidence            9999999988864   22     2211     22444444444321 1     1223455788999999988776 3567


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCC----------ChHHHHHHhhcC-chhHHHHHHHHHHHhhccC
Q 039940          293 IKKESCWTVSNITAGNRKQIQAVIDAG----------LIVPLVNLLQDA-EFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       293 v~~~a~~~l~nl~~~~~~~~~~l~~~~----------~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  350 (449)
                      ++.++.-++++..+++......+.+..          ++-.++.+.... .+..|..+.+++......+
T Consensus       333 IltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  333 ILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            999999999999999888777776521          122344444433 6788999999999888763

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=7.5e-08  Score=89.88  Aligned_cols=226  Identities=15%  Similarity=0.164  Sum_probs=168.5

Q ss_pred             hhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940           16 NLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        16 ~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~   95 (449)
                      ++.-..+.-+.++.+|.+.-+.++..|+..+.++.-.- .+..+     ..+|.|++-|.+++ +.++.+|+.+++.++.
T Consensus       138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELAr  210 (877)
T KOG1059|consen  138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELAR  210 (877)
T ss_pred             CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHh
Confidence            33444566778899999999999999999998886542 22222     34899999999999 8999999999999999


Q ss_pred             CChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940           96 GTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT  174 (449)
Q Consensus        96 ~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  174 (449)
                      .+|.+--     ..-|.+.++|.. .|.=+.-..+..+++|+--.|...     ...++++.+++.......+...+..+
T Consensus       211 KnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNT  280 (877)
T KOG1059|consen  211 KNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNT  280 (877)
T ss_pred             hCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            8886543     345889998864 333344557788888876666543     34577999999555555566666655


Q ss_pred             HHHh--hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh
Q 039940          175 LSNL--CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI  252 (449)
Q Consensus       175 l~~l--~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  252 (449)
                      +...  +.+. ........-+++.|-.++.++|++++.-.+.+++.+...++...+     ..-+.++.+|.+.++.+|.
T Consensus       281 VVa~s~s~g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRl  354 (877)
T KOG1059|consen  281 VVAVSMSSGM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRL  354 (877)
T ss_pred             heeehhccCC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHH
Confidence            5433  3332 233444467788888888999999999999999999988876544     2357889999999999999


Q ss_pred             hHHHHHHHhhcC
Q 039940          253 PALRTVGNIVTG  264 (449)
Q Consensus       253 ~a~~~l~~l~~~  264 (449)
                      .|+..+.-+...
T Consensus       355 rALdLl~gmVsk  366 (877)
T KOG1059|consen  355 RALDLLYGMVSK  366 (877)
T ss_pred             HHHHHHHHHhhh
Confidence            999999887753

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.19  E-value=1.7e-09  Score=97.02  Aligned_cols=229  Identities=14%  Similarity=0.148  Sum_probs=164.6

Q ss_pred             HHHHHHHHccc-ccHHHHHHHHHHHHHhhcCCCCCChhhhh-------chHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          152 LIPLLAQLNEH-ARLSMLRIGTWTLSNLCKGKPQPPFDQVR-------PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       152 i~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                      ...+++++... .++++..+++..+..+....+........       .....+++++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            45566777666 78999999999999999988754433321       24566677888999999999999999998776


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh------ccCCchhH
Q 039940          224 NDKIQAVIEAGVCGPLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL------INNHKKSI  293 (449)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll------~~~~~~~v  293 (449)
                      +....... .+.++.++..+.+    ++.+++..++.++.++... +..+..+.+.++++.+..++      .++...++
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            54433222 3455666666654    4556778899999999875 88888899999999999999      44447789


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc
Q 039940          294 KKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL  372 (449)
Q Consensus       294 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~  372 (449)
                      +.+++.++.-++. +++....+.+.++++.|.++++.. ..++.+.+..++.|++..........++..|+++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            9999999999966 567788888889999999999776 78999999999999999866558888899888888877776


Q ss_pred             C--CCHHHHHHHH
Q 039940          373 C--ADPEIVTVCL  383 (449)
Q Consensus       373 ~--~~~~~~~~~~  383 (449)
                      .  .|+++.+-.-
T Consensus       294 rk~~Dedl~edl~  306 (312)
T PF03224_consen  294 RKWSDEDLTEDLE  306 (312)
T ss_dssp             S--SSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            4  5888765433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.5e-09  Score=90.94  Aligned_cols=188  Identities=15%  Similarity=0.168  Sum_probs=156.5

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH
Q 039940          162 HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE  241 (449)
Q Consensus       162 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  241 (449)
                      +.+.+-+..++.-|..++.+..+......-+++..++..+.+.+.++|..++++|+..+++++.....+++.|+++.|+.
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            34566777788888888877655555555667777777999999999999999999999999998899999999999999


Q ss_pred             hhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 039940          242 LLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAG  319 (449)
Q Consensus       242 ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  319 (449)
                      .+.++++ .++..|+.+++.+.++++.....+...++...|...++++ .+...+..++..++.+..........+...+
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            9987654 4679999999999999999999999999999999999984 2788899999999999986555555555567


Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      +-..+..+....+.++++.+..++..+...
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            777777777888999999999888887664

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.16  E-value=1.3e-09  Score=97.77  Aligned_cols=227  Identities=20%  Similarity=0.270  Sum_probs=160.1

Q ss_pred             hHHHHHhhC--CCChHHHHHHHHHHHHHhcCCCchhhhHhh------cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          110 VPIFVKLLA--SPSDDVREQAVWALGNIVAHSPGCRNLVLH------EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       110 i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      ...++.+|+  +.++++....+..+..+..+++...+.+..      .....++++++ +.+|..+...++.++..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            444445544  468999999999999999998877776654      23577888866 677999999999999999998


Q ss_pred             CCCCChhhhhchHHHHHHhhc----CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh-----CC--CCCcc
Q 039940          182 KPQPPFDQVRPVLPALAQLIH----LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL-----GH--PSPSV  250 (449)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll-----~~--~~~~v  250 (449)
                      .+........+.++.+...+.    +++.+++..++.++.++...+. ....+.+.++++.+..++     .+  .+..+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            866665534556666666555    3567788999999999996654 456688889999999999     22  34568


Q ss_pred             hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHhh
Q 039940          251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-QIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~ll~  329 (449)
                      ...++.|++.++.. ++....+.+.++++.|..+++.....++.+-+..++.|++...+. ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            88899999999875 677777888889999999998776788999999999999975443 6777778777777766665


Q ss_pred             cC--chhHHHHH
Q 039940          330 DA--EFDIKKEA  339 (449)
Q Consensus       330 ~~--~~~v~~~a  339 (449)
                      .+  |+++.+..
T Consensus       294 rk~~Dedl~edl  305 (312)
T PF03224_consen  294 RKWSDEDLTEDL  305 (312)
T ss_dssp             S--SSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            44  66665543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=6.6e-08  Score=91.43  Aligned_cols=370  Identities=15%  Similarity=0.161  Sum_probs=195.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940           24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKV  103 (449)
Q Consensus        24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  103 (449)
                      .|.+.++++..++.++..|+.+..++....  +....    .+++....+|.+.+ .-+...++..+..+|..+++....
T Consensus       144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~  216 (866)
T KOG1062|consen  144 APEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY  216 (866)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence            344444555555555555555555554332  21111    12344444454444 355555555555555555544444


Q ss_pred             HHhCCChHHHHHhhCC---------------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc--ccHH
Q 039940          104 LIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH--ARLS  166 (449)
Q Consensus       104 ~~~~~~i~~L~~~l~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~  166 (449)
                      +.+  .++.|+..|+.               +++-++...++.|+-+-.+++...+.+.+  .+..+..-...+  ....
T Consensus       217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~GnA  292 (866)
T KOG1062|consen  217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGNA  292 (866)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchhH
Confidence            443  33444443321               34556666666666665555544433321  111111111000  0123


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC
Q 039940          167 MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP  246 (449)
Q Consensus       167 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~  246 (449)
                      +...++.++..+-...     ....-++..|-++|.+.|.+++.-++..|......++...+     .-=..++.+|+++
T Consensus       293 ILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~tIleCL~Dp  362 (866)
T KOG1062|consen  293 ILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRSTILECLKDP  362 (866)
T ss_pred             HHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHHHHHHHhcCC
Confidence            3444444444333222     11123455666777777777777777777777766664433     1225678888888


Q ss_pred             CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHH-----------
Q 039940          247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQA-----------  314 (449)
Q Consensus       247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~-----------  314 (449)
                      +..++..|+..+..+...  .+...     .++.|+..|.+. +++.+...+.-+..++. -.|+.+..           
T Consensus       363 D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a  434 (866)
T KOG1062|consen  363 DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA  434 (866)
T ss_pred             cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence            988999988888777654  22222     355677888777 78888887777777765 22222221           


Q ss_pred             --HHHCCChHHHHHHhhcC-------------------------chhHHHHHHHHHHHhh---cc-CCHHHHHHHHHcCC
Q 039940          315 --VIDAGLIVPLVNLLQDA-------------------------EFDIKKEAAWAISNAT---KA-GTQEQIKYLVREGC  363 (449)
Q Consensus       315 --l~~~~~~~~L~~ll~~~-------------------------~~~v~~~a~~aL~~l~---~~-~~~~~~~~l~~~~~  363 (449)
                        +++..++..+++++.+.                         .+.+...|.|+|+.-.   .. ++.+.-...-+..+
T Consensus       435 G~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdi  514 (866)
T KOG1062|consen  435 GDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDI  514 (866)
T ss_pred             ccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHH
Confidence              12233556666666543                         2334455666665432   11 11111112223456


Q ss_pred             hHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHH
Q 039940          364 IKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI  440 (449)
Q Consensus       364 ~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~  440 (449)
                      +..|..++.+  .+..++..++.++.+|.......             .+.+     -+.+..+..+-+.+++++|...
T Consensus       515 vd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-------------~~ri-----~~lI~~~~~s~~~elQQRa~E~  575 (866)
T KOG1062|consen  515 VDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-------------SERI-----KQLISSYKSSLDTELQQRAVEY  575 (866)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-------------HHHH-----HHHHHHhcccccHHHHHHHHHH
Confidence            7778887765  35677888888888887655431             1112     2335566777788888887653

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=4.3e-08  Score=88.97  Aligned_cols=357  Identities=10%  Similarity=0.072  Sum_probs=222.5

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .+.+++++.++.+.|..++..|+..+.+++..-+.+  ....-+.+...+.++..+++ ..++. ++..+-.+..+-...
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--v~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte  158 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--VLVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTE  158 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--cccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccc
Confidence            467899999999999999999999999987653222  12223445677777777776 45544 444444333311111


Q ss_pred             hH-HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH-hhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          101 TK-VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV-LHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       101 ~~-~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      .. .+--.+++|.|-.-+...++..|...+.-|..+-.. |.. +++ .-...++.+++++ .+++.+++..+-.+++++
T Consensus       159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~f  235 (675)
T KOG0212|consen  159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEF  235 (675)
T ss_pred             cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHH
Confidence            11 232235677777777778899999888888877332 322 222 1223566677788 777888888777777776


Q ss_pred             hcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc-chhhHHH
Q 039940          179 CKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS-VLIPALR  256 (449)
Q Consensus       179 ~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~-v~~~a~~  256 (449)
                      ..... .+........++.++.-+.++++.++..++.-+.....-.+... ...-+|++..++.++.++++. ++..+..
T Consensus       236 L~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~  314 (675)
T KOG0212|consen  236 LAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQM  314 (675)
T ss_pred             HHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence            65542 22232456788899999999999999888766666655444322 234457888888888877664 4444332


Q ss_pred             H---HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCch
Q 039940          257 T---VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEF  333 (449)
Q Consensus       257 ~---l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~  333 (449)
                      .   +..++.. +...+.+--..+++.+.+.+++. ..+.|..+..-+.-+-...+... ......+++.|+.-|.+.+.
T Consensus       315 ~n~~l~~l~s~-~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd  391 (675)
T KOG0212|consen  315 VNGLLLKLVSS-ERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD  391 (675)
T ss_pred             HHHHHHHHHhh-hhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence            2   2222221 11111111124678888889888 88899888866665544333221 22245789999999999999


Q ss_pred             hHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          334 DIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       334 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      +|...++..+.+++...+..+...     ++..|..++..+..-+...+.-++..++-.-
T Consensus       392 ~vvl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL  446 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL  446 (675)
T ss_pred             HHHHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence            999999999999999743322211     3344445554444334445555555555433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.09  E-value=2.6e-07  Score=84.26  Aligned_cols=373  Identities=13%  Similarity=0.139  Sum_probs=229.1

Q ss_pred             ccCCCCCCC--chhhHhhhcHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC
Q 039940            6 FLPSAPAPS--LNLQTKLEILPAMVAGVWS-------DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR   76 (449)
Q Consensus         6 ~~p~~~~~~--~~~~~~~~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~   76 (449)
                      .+|..|.+.  .-...-.+.+|.++++|..       +|+..-..|..+|.-++...    ...+.+. ++..+=+-+++
T Consensus       303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~  377 (858)
T COG5215         303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRS  377 (858)
T ss_pred             hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccC
Confidence            356666633  1122234578999999953       34667777777776665322    1122221 34444455778


Q ss_pred             CCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHH
Q 039940           77 EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLL  156 (449)
Q Consensus        77 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~  156 (449)
                      ++ -.-++.|+.+++.+..+..+....-+-...+|.+...+.++..-+...++|+++.++..-+.   .+-.++.++..+
T Consensus       378 ~~-w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~v  453 (858)
T COG5215         378 ES-WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEV  453 (858)
T ss_pred             ch-hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHH
Confidence            88 48889999999999986544444444446799999999988888999999999999765332   233344444444


Q ss_pred             HHHcc--cccHHHHHHHHHHHHHhhcCCCCCC---hhhh----hchHHHHHHhhc--CCCHHHHHHHHHHHHHcccCChh
Q 039940          157 AQLNE--HARLSMLRIGTWTLSNLCKGKPQPP---FDQV----RPVLPALAQLIH--LDDEEVLRNVCWTLSNLSDGTND  225 (449)
Q Consensus       157 ~~l~~--~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~----~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~  225 (449)
                      .....  ...+.+..+++|...|+..+.+...   ....    ..++..|++...  .++...|.....+|+.+....++
T Consensus       454 sa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d  533 (858)
T COG5215         454 SASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD  533 (858)
T ss_pred             HHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence            33211  2346777899999999988763322   1112    333333333322  24567788888888887755544


Q ss_pred             HHHHHHHhCcHHHHHHhhC-----------CC----CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc
Q 039940          226 KIQAVIEAGVCGPLVELLG-----------HP----SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK  290 (449)
Q Consensus       226 ~~~~~~~~~~~~~L~~ll~-----------~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  290 (449)
                      ....+. .|+......-+.           ..    ..+++.+-+..|..+.+.....++.+ +..++..++.+|++...
T Consensus       534 ~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~  611 (858)
T COG5215         534 AVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKP  611 (858)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCC
Confidence            322221 133333332221           21    23456666666666655433322211 22367788888888733


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940          291 KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL  370 (449)
Q Consensus       291 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l  370 (449)
                      ..+-.....++++++..-.+....... .++|.|.+-++..+..+...|...++.++..-+.++..+  ....+..|.++
T Consensus       612 t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~  688 (858)
T COG5215         612 TTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQC  688 (858)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHH
Confidence            445567788888887654454444443 699999999988899999999999999987644443332  33468889999


Q ss_pred             ccCC--CHHHHHHHHHHHHHHHHh
Q 039940          371 LLCA--DPEIVTVCLKGLENILKV  392 (449)
Q Consensus       371 l~~~--~~~~~~~~~~~l~~l~~~  392 (449)
                      ++++  +.+++-..+.++..+...
T Consensus       689 lss~~~~R~lKPaiLSvFgDIAla  712 (858)
T COG5215         689 LSSEATHRDLKPAILSVFGDIALA  712 (858)
T ss_pred             hcChhhccccchHHHHHHHHHHHH
Confidence            9876  445666666666665543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.07  E-value=3.8e-09  Score=96.61  Aligned_cols=266  Identities=16%  Similarity=0.128  Sum_probs=183.5

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh--hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC
Q 039940          108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR--NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP  185 (449)
Q Consensus       108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  185 (449)
                      -++..++.+|++..+.+|.+|+...+.++..-..+.  +.+...|.  .|.+.+ ...++++....+.++..+.......
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            356778888999999999999999888863221111  12222222  234444 5567888888887777766554222


Q ss_pred             C-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 039940          186 P-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       186 ~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~  264 (449)
                      . ..-..+++|.+..+|++...++..+.+..++.++.+.++....---..+.--|++.|++.+.++|..|...++.++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            1 123478999999999999999999999999999988776433222224455677788888999999999999988764


Q ss_pred             ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH
Q 039940          265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS  344 (449)
Q Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~  344 (449)
                      -       ....++..|+.-|+.. +...|....-+++-.+..+-.       ..++|.|+.=...++..|+.-.+.+++
T Consensus       761 i-------GPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~  825 (975)
T COG5181         761 I-------GPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMC  825 (975)
T ss_pred             c-------CHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHH
Confidence            2       2234666777777766 555555555555544432211       136777777777778899999999999


Q ss_pred             HhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          345 NATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       345 ~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+.......-.+++..  ..+.|.+.+.+.|+--+..+...+..+.-.+
T Consensus       826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            9988644444455443  5677778888889888888888888776554

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.06  E-value=4.8e-08  Score=88.83  Aligned_cols=356  Identities=13%  Similarity=0.076  Sum_probs=219.2

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcC-C-HHHHHHhhcCCCCHHHHHHHHHHHHHhcC-----
Q 039940           24 LPAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAG-I-VPRFVEFLLREDYPRLQFEAAWVLTNIAS-----   95 (449)
Q Consensus        24 i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~-i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-----   95 (449)
                      +..++.....+. ......++.++...+...  .+...+-..+ + +......++......++..|+.+|.+-+.     
T Consensus       135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n  212 (858)
T COG5215         135 MEEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN  212 (858)
T ss_pred             HHHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444443 456677788888886543  3322222222 2 22333345555557899999999987332     


Q ss_pred             -CChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940           96 -GTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT  174 (449)
Q Consensus        96 -~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  174 (449)
                       ..++.++.     ++...++.-+.++.+++..+..+|..+..-...+-+..++.-........+ ++++.++...+...
T Consensus       213 f~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEf  286 (858)
T COG5215         213 FCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEF  286 (858)
T ss_pred             hcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHH
Confidence             11223332     456777778889999999999999988644333333333322222233334 78889999999998


Q ss_pred             HHHhhcCCCCCChh-----------------hhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940          175 LSNLCKGKPQPPFD-----------------QVRPVLPALAQLIHL-------DDEEVLRNVCWTLSNLSDGTNDKIQAV  230 (449)
Q Consensus       175 l~~l~~~~~~~~~~-----------------~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~  230 (449)
                      .+.+|.+.......                 ....++|.|+++|..       +|..+...+-.||--.+....   +.+
T Consensus       287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i  363 (858)
T COG5215         287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKI  363 (858)
T ss_pred             HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHh
Confidence            88888765221111                 125688999999974       235566666666665554332   223


Q ss_pred             HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940          231 IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       231 ~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  310 (449)
                      ++ .++..+-.-+..+++.-++.+..+++.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.++.+-+.
T Consensus       364 ~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~  441 (858)
T COG5215         364 MR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAM  441 (858)
T ss_pred             HH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHH
Confidence            33 2556666667888999999999999999888665544445567888888888877 888999999999999765433


Q ss_pred             HHHHHHHCCChHHHHHHhhc---CchhHHHHHHHHHHHhhccCCHHHH--HHHHHcC---ChHHHHhhcc--CCCHHHHH
Q 039940          311 QIQAVIDAGLIVPLVNLLQD---AEFDIKKEAAWAISNATKAGTQEQI--KYLVREG---CIKPLCDLLL--CADPEIVT  380 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~--~~l~~~~---~~~~L~~ll~--~~~~~~~~  380 (449)
                      .+   -.+|-++..+....-   +.+.+..+++|+..|++.+-.+..+  ..++..-   .+..|+..-+  ..+...|.
T Consensus       442 ~i---~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~  518 (858)
T COG5215         442 II---SPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRV  518 (858)
T ss_pred             hc---CccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            22   233444444433322   3678889999999999987432221  1111111   2222332222  23445778


Q ss_pred             HHHHHHHHHHHhhhh
Q 039940          381 VCLKGLENILKVGEA  395 (449)
Q Consensus       381 ~~~~~l~~l~~~~~~  395 (449)
                      .+..+|..++.+.++
T Consensus       519 s~fsaLgtli~~~~d  533 (858)
T COG5215         519 SLFSALGTLILICPD  533 (858)
T ss_pred             HHHHHHHHHHhhcch
Confidence            888888888877654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=3.1e-07  Score=89.31  Aligned_cols=330  Identities=16%  Similarity=0.176  Sum_probs=227.2

Q ss_pred             HHHHHHHHHHHHHhccCCCCc----HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHH
Q 039940           37 SMQLEAATQFRRLLSIERSLP----IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPI  112 (449)
Q Consensus        37 ~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  112 (449)
                      .-...++.+|.|+.+.. .+.    .....--|.++.+..++.....+.++..|+.++..+.. +.++...+...|.+..
T Consensus      1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            35567899999998764 222    22233457788888888877668999999999988777 7899999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC---CCCChhh
Q 039940          113 FVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK---PQPPFDQ  189 (449)
Q Consensus       113 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~  189 (449)
                      |+.+|.+ -+..|+.++.+|+.+++.. +.....++.|++..+..++..+..++.+.+++..+..+..+.   |......
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999975 5778999999999997654 455556688999999998878888999999999999999876   3333322


Q ss_pred             hhchH-----------HHHHHhhcC--CCHHH------HHHHHHHHHHcc--------cCC------hhH----------
Q 039940          190 VRPVL-----------PALAQLIHL--DDEEV------LRNVCWTLSNLS--------DGT------NDK----------  226 (449)
Q Consensus       190 ~~~~l-----------~~l~~ll~~--~~~~~------~~~~~~~l~~l~--------~~~------~~~----------  226 (449)
                      ....-           ...++++..  +++++      +...-..+..+.        .++      +++          
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            22222           223333331  22221      222222222211        000      000          


Q ss_pred             --------HHHHHH------------hCcHHHHHHhhCCCCCc--chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940          227 --------IQAVIE------------AGVCGPLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL  284 (449)
Q Consensus       227 --------~~~~~~------------~~~~~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  284 (449)
                              ...+.+            .++++.+..++..++++  .......++..+.+..+...+++-..|.+|+++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    001111            14566677777665543  33333444555566667777777788999999999


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCCh
Q 039940          285 LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCI  364 (449)
Q Consensus       285 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~  364 (449)
                      +... +..+-..|..+|..++. +.-....+.....+..++..++.. +...--|+.+|..+......+........|++
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            9887 77777899999999976 345556666666677777777653 35556889999999987666777777889999


Q ss_pred             HHHHhhccC
Q 039940          365 KPLCDLLLC  373 (449)
Q Consensus       365 ~~L~~ll~~  373 (449)
                      +.|+.+++.
T Consensus      2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhcc
Confidence            999999975

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=2.3e-08  Score=90.69  Aligned_cols=321  Identities=16%  Similarity=0.112  Sum_probs=208.8

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc
Q 039940           62 IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG  141 (449)
Q Consensus        62 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  141 (449)
                      .-.+++++.+..+.+++ ..++..|+..+.|++.. ...........+...++++..+.+..++. +...+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            44677889999999998 79999999999999873 11222222335677888888777777765 44555555433221


Q ss_pred             hhh-hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940          142 CRN-LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       142 ~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  220 (449)
                      -+. .+--.+.++-+-..+ ...++..+...+.-+..+-..++..-......+++.+..+|..+.++++.-+=.++.+..
T Consensus       158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            111 111112333333333 456788888888777777665444444455889999999999999998866555554433


Q ss_pred             ---cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh-HHHH
Q 039940          221 ---DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS-IKKE  296 (449)
Q Consensus       221 ---~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~  296 (449)
                         ++++..   +-....++.++.-+.++++.++..|+..+..+..-.+... ...-+|++..++.++.+. +.. ++..
T Consensus       237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~  311 (675)
T KOG0212|consen  237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY  311 (675)
T ss_pred             HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence               122221   1122678888999999999999999888887776533322 233467888888888877 443 4433


Q ss_pred             HHHH---HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhcc
Q 039940          297 SCWT---VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLL  372 (449)
Q Consensus       297 a~~~---l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~  372 (449)
                      +...   +..++. ++.....+--..+++.+...+.++..+.|..++..+..+-.....+   .+. .......|..-++
T Consensus       312 a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q---l~~h~~~if~tLL~tLs  387 (675)
T KOG0212|consen  312 AQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ---LLVHNDSIFLTLLKTLS  387 (675)
T ss_pred             HHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch---hhhhccHHHHHHHHhhc
Confidence            3222   222222 2221112111246788888899999999999998888887653222   222 3457888999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhh
Q 039940          373 CADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       373 ~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +.+.++...++..+.+++.....
T Consensus       388 d~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  388 DRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             CchhHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999977655

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=9.6e-07  Score=81.84  Aligned_cols=315  Identities=16%  Similarity=0.111  Sum_probs=211.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940           66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL  145 (449)
Q Consensus        66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  145 (449)
                      ++..+..-+..+. +.+|.....++..+.......    -...+.+.+.+++......-+..+.+.++.+..+...  ..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence            4677788888888 899998888888776521111    1113467788888888888889999999999776532  34


Q ss_pred             HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940          146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND  225 (449)
Q Consensus       146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~  225 (449)
                      ..+.+.+..+.....+..+..-++.+..+....+..-...........+|.++....+..+.++..+..+...+.+.-+.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            44667777888777433333334334444444443332223333456677777777777888998888877766544322


Q ss_pred             H-HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940          226 K-IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI  304 (449)
Q Consensus       226 ~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  304 (449)
                      . .+     .+++.++.-+....|..+..++..++.++...+.+.. ..-..++|.+.+.|.+. .+++|+.+..++.++
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            1 11     2445555555555889999999999999887666554 33467999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHH------------------------------CC----ChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940          305 TA--GNRKQIQAVID------------------------------AG----LIVPLVNLLQDAEFDIKKEAAWAISNATK  348 (449)
Q Consensus       305 ~~--~~~~~~~~l~~------------------------------~~----~~~~L~~ll~~~~~~v~~~a~~aL~~l~~  348 (449)
                      ++  .+++ ++.++.                              ..    ++|.|.+-+...+..+++.++..+.|++.
T Consensus       323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            86  4443 222111                              01    23334444444577888999999999988


Q ss_pred             cC-CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          349 AG-TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       349 ~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      -- ++.....++. .+++.|-..+.+..|++|..+..+|..+.+.....
T Consensus       402 LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  402 LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            64 4444433332 26777777777789999999999998888776554

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.97  E-value=1.6e-06  Score=81.65  Aligned_cols=385  Identities=17%  Similarity=0.179  Sum_probs=234.9

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc-------CCCCHHHHHHHHHHHHHhc
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL-------REDYPRLQFEAAWVLTNIA   94 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-------~~~~~~~~~~a~~~L~~l~   94 (449)
                      +.+-.+++-..|+|.+.....+..+.+++...  ......+...++|.++....       ..++..+...++.+-..+.
T Consensus       636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG  713 (1172)
T KOG0213|consen  636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG  713 (1172)
T ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence            44556677778899988888888888887653  33344555667777766543       2222233333333333322


Q ss_pred             CCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc--hhhhHhhcCCHHHHHHHHcc-cccHHHHHHH
Q 039940           95 SGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG--CRNLVLHEEALIPLLAQLNE-HARLSMLRIG  171 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a  171 (449)
                      .           ...+..++.-+.++++..|..++.+..++...-+.  +... .+...+..++..+.. +.+..+.-.+
T Consensus       714 ~-----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider-leE~lidgil~Afqeqtt~d~vml~g  781 (1172)
T KOG0213|consen  714 S-----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER-LEERLIDGILYAFQEQTTEDSVMLLG  781 (1172)
T ss_pred             c-----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHhcccchhhhhhh
Confidence            2           12355666667778888888887777776543221  1111 133445556655532 3334455555


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH--HHHHHHhCcHHHHHHhhCCCCCc
Q 039940          172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK--IQAVIEAGVCGPLVELLGHPSPS  249 (449)
Q Consensus       172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~L~~ll~~~~~~  249 (449)
                      ..++.+-...   +.......++..++..|++..+.++..++..++.++.--...  .+.+-..|  -.|...|....++
T Consensus       782 fg~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypE  856 (1172)
T KOG0213|consen  782 FGTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPE  856 (1172)
T ss_pred             HHHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHH
Confidence            5555543332   223344577788899999999999999999998877321111  11122222  3567778888899


Q ss_pred             chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHCCChHHHHHH
Q 039940          250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI--QAVIDAGLIVPLVNL  327 (449)
Q Consensus       250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~l~~~~~~~~L~~l  327 (449)
                      +.-..+.++..+...-.-....-=-.+++|.|..+|++. ..+++.+....++.++-..++.+  .+..  .+--.|+++
T Consensus       857 vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWM--RIcfeLlel  933 (1172)
T KOG0213|consen  857 VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWM--RICFELLEL  933 (1172)
T ss_pred             HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHH
Confidence            888887777766543110000000247899999999999 99999999999999996544422  1111  244467888


Q ss_pred             hhcCchhHHHHHHHHHHHhhccCCHHHH-HH---------------------HH-H-cC---ChHHHHhhccCCCHHHHH
Q 039940          328 LQDAEFDIKKEAAWAISNATKAGTQEQI-KY---------------------LV-R-EG---CIKPLCDLLLCADPEIVT  380 (449)
Q Consensus       328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~---------------------l~-~-~~---~~~~L~~ll~~~~~~~~~  380 (449)
                      |...+.++|.+|..+++.++..-.+..+ ..                     ++ + +|   +++.|++--..++-.++.
T Consensus       934 LkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen  934 LKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHH
Confidence            8999999999999999998886443321 11                     11 1 22   355555555566777899


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940          381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE  442 (449)
Q Consensus       381 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~  442 (449)
                      .++++++-+|++..+...         .|.-.+     ...|+.-..+.+.-.++.|..+|.
T Consensus      1014 GVLkalsf~Feyigemsk---------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSK---------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred             hHHHHHHHHHHHHHHHhh---------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHH
Confidence            999999999988765432         122222     344444455555555666555554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=8.9e-08  Score=92.92  Aligned_cols=270  Identities=19%  Similarity=0.238  Sum_probs=203.8

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH
Q 039940           35 DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV  114 (449)
Q Consensus        35 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  114 (449)
                      ...-|+.|...-....+.++.++-+       +|.+++.|-+   .--+..|+..|+....-.+-....-...|+.|+++
T Consensus       449 FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL  518 (1387)
T KOG1517|consen  449 FFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVL  518 (1387)
T ss_pred             hHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence            3455666766666666555455444       6667776665   34467899999999987788888888899999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc--ccHHHHHHHHHHHHHhhcCCCCCChhhh-h
Q 039940          115 KLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH--ARLSMLRIGTWTLSNLCKGKPQPPFDQV-R  191 (449)
Q Consensus       115 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~  191 (449)
                      ++|+++-.+++...+.+.+.+...++.++..+.+.++-..++..+..+  -+++-+..++++|+.++.+.+..+.... .
T Consensus       519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~  598 (1387)
T KOG1517|consen  519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG  598 (1387)
T ss_pred             HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence            999999999999999999999888888887777777776777777432  2468888999999999999755554444 6


Q ss_pred             chHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----Ch
Q 039940          192 PVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG----DD  266 (449)
Q Consensus       192 ~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~  266 (449)
                      +.+..+...+.++ .+-++..++-||+.|-.+.+...-.-.+.+..+.|+.+|.++-++||..|+++|+.+..+    .+
T Consensus       599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd  678 (1387)
T KOG1517|consen  599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD  678 (1387)
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence            7778888888875 678899999999999988765444445567889999999999999999999999999875    23


Q ss_pred             hhHHHH------------HhcCCH---HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          267 FQTQCV------------INHGAV---PYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       267 ~~~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                      +....+            ++..+.   -.++.+++.+ .+-++.+.+-+++.+..+........
T Consensus       679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~v  741 (1387)
T KOG1517|consen  679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVV  741 (1387)
T ss_pred             hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHH
Confidence            322222            222222   2566677778 88999999999999987665544433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.92  E-value=8.4e-07  Score=85.58  Aligned_cols=355  Identities=12%  Similarity=0.111  Sum_probs=222.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH
Q 039940           26 AMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI  105 (449)
Q Consensus        26 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  105 (449)
                      .+++.+.+.|-+.|+.|+.-|.+=+... ....+.=-...++..++++|.+.+ .++|..|+.|++-++..-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            6788888999999999998877655432 111221123456888999999999 899999999999999744333221  


Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHH----cccc-cHHHHHHHHHHHHHhhc
Q 039940          106 DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL----NEHA-RLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       106 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~~~-~~~~~~~a~~~l~~l~~  180 (449)
                        ..++.|+.-+-++.+..|..+.-.|......-+......+...+.+.+...+    .... ...++..++..+.-+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              2356666665554455554444444333332222222222333444444443    2222 23356666666555444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 039940          181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVG  259 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~  259 (449)
                      .....-......++..++.-+.++-..++..++.+|+.++...+..   .+ .++++.+++-|..+ .+.....-..+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            4322222345677777787788888999999999999998654421   11 24566666666553 3444555667777


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc------
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALL---INNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD------  330 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~------  330 (449)
                      .+++........ .-..+++.+.+..   +.. +.++|+....++..+...+|..+...+. .++..+++.+..      
T Consensus       239 ~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGS-HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhc-ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            777643322111 1235778888887   666 8889999999999998877765533322 233344443321      


Q ss_pred             -------------------------C---chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 039940          331 -------------------------A---EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVC  382 (449)
Q Consensus       331 -------------------------~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~  382 (449)
                                               +   +..||++|+.++..+... ..+....+.+. +-+.+++-+++..+.++...
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence                                     0   235999999999999886 55665555543 66788888888888888888


Q ss_pred             HHHHHHHHHhhhh
Q 039940          383 LKGLENILKVGEA  395 (449)
Q Consensus       383 ~~~l~~l~~~~~~  395 (449)
                      +.++..+++.-..
T Consensus       394 f~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  394 FHAYIALLKQTRP  406 (1233)
T ss_pred             HHHHHHHHHcCCC
Confidence            8888888765543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.9e-05  Score=67.48  Aligned_cols=359  Identities=16%  Similarity=0.139  Sum_probs=233.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           26 AMVAGVWSDDNSMQLEAATQFRRLLSIERSLP---IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        26 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      .+-..|..++..+...++..+..+....+...   +..+++.++++.++..+...+ .++...|...+..++. .+....
T Consensus        86 dLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaale  163 (524)
T KOG4413|consen   86 DLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAALE  163 (524)
T ss_pred             HHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHHH
Confidence            33344456778888888888887776542222   334568999999999999999 7999999999999998 787778


Q ss_pred             HHHhCCChHHH--HHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          103 VLIDHGAVPIF--VKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       103 ~~~~~~~i~~L--~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      .+......+-+  ..+...-+.-.|...+..+..+.+-+|.....+...|.+..+..-+....|.-++.+++.....+..
T Consensus       164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae  243 (524)
T KOG4413|consen  164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE  243 (524)
T ss_pred             HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence            78777655433  3333345667788888899999888998888888889898888888666788888899998888888


Q ss_pred             CCCCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHcccCChh---HHHHHHHh--CcHHHHHHhhCCCCCcchhh
Q 039940          181 GKPQPPFDQVRPVLPALAQLIHL--DDEEVLRNVCWTLSNLSDGTND---KIQAVIEA--GVCGPLVELLGHPSPSVLIP  253 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~--~~~~~L~~ll~~~~~~v~~~  253 (449)
                      ......+...++.++.+..++.-  ++|--.-.++...+.+.....-   ..+.+.+.  -.++..+..+...+++....
T Consensus       244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaiea  323 (524)
T KOG4413|consen  244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEA  323 (524)
T ss_pred             HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHH
Confidence            77667777778999999988873  3443333344333333211100   00111111  23445556667789999999


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCC--HHHH-HHHhccCCchhHHHHHHHHHHHHhcC---CHHHH---------HHHH--
Q 039940          254 ALRTVGNIVTGDDFQTQCVINHGA--VPYL-LALLINNHKKSIKKESCWTVSNITAG---NRKQI---------QAVI--  316 (449)
Q Consensus       254 a~~~l~~l~~~~~~~~~~~~~~~~--l~~L-~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~---------~~l~--  316 (449)
                      |.-+++.+-+. .+..+.+.+.|-  ...+ ......+ ...-+..+..+|.+++..   .++++         ..++  
T Consensus       324 AiDalGilGSn-teGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd  401 (524)
T KOG4413|consen  324 AIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD  401 (524)
T ss_pred             HHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH
Confidence            99999998765 333444444332  2222 2333322 333456677888888751   22211         1111  


Q ss_pred             ---H---CCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCCC---HHHHHHHHHHH
Q 039940          317 ---D---AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCAD---PEIVTVCLKGL  386 (449)
Q Consensus       317 ---~---~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~~---~~~~~~~~~~l  386 (449)
                         +   -.-...+..+++.+.++++..+..++..++..  +-..+.++ ..+.++...+.-...+   .+-+..+++++
T Consensus       402 aaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtDastEhaKaakdAkYeccKAi  479 (524)
T KOG4413|consen  402 AAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAI  479 (524)
T ss_pred             HHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHH
Confidence               1   13355667777888999999999999999874  44444444 4677766665543322   22344555555


Q ss_pred             HHHH
Q 039940          387 ENIL  390 (449)
Q Consensus       387 ~~l~  390 (449)
                      .+-+
T Consensus       480 aeaf  483 (524)
T KOG4413|consen  480 AEAF  483 (524)
T ss_pred             HHHH
Confidence            5443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=2.3e-06  Score=81.40  Aligned_cols=287  Identities=15%  Similarity=0.189  Sum_probs=159.2

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-
Q 039940           69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL-  147 (449)
Q Consensus        69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-  147 (449)
                      .+.+=|++++ .-++-.|+.+|++++.  +|....+     .|-+.+++++.++.+|..|+.+...+.+..|...+.+. 
T Consensus       111 slknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~  182 (866)
T KOG1062|consen  111 SLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI  182 (866)
T ss_pred             HHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence            3444456666 5666677777777775  4444432     46666777777777777777777777665554433222 


Q ss_pred             -------h--cCC----HHHHHHHHccccc-----HHHHHHHHHHHHHhhcCC--CCCChhhh-hchHH----HHHHhhc
Q 039940          148 -------H--EEA----LIPLLAQLNEHAR-----LSMLRIGTWTLSNLCKGK--PQPPFDQV-RPVLP----ALAQLIH  202 (449)
Q Consensus       148 -------~--~~~----i~~l~~~l~~~~~-----~~~~~~a~~~l~~l~~~~--~~~~~~~~-~~~l~----~l~~ll~  202 (449)
                             +  .|+    +..+..++..+++     ..+.......|.++....  |......+ .++++    .++.+|.
T Consensus       183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence                   1  122    3333344422111     234555666677776655  22222111 23332    2344555


Q ss_pred             CCCHHHHHHHHHHHHHcccCChhHH---HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH------
Q 039940          203 LDDEEVLRNVCWTLSNLSDGTNDKI---QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI------  273 (449)
Q Consensus       203 ~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~------  273 (449)
                      ++|++........|..++.+.+...   ..+.- ..+..+..+  .++..+|..|+.+|+.+..+.+.+.+.+.      
T Consensus       263 q~d~daSd~M~DiLaqvatntdsskN~GnAILY-E~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r  339 (866)
T KOG1062|consen  263 QNDADASDLMNDILAQVATNTDSSKNAGNAILY-ECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR  339 (866)
T ss_pred             CCCccHHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence            6676666666666666665433211   11110 111122111  23444555555555555544443322110      


Q ss_pred             ----hc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940          274 ----NH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN  345 (449)
Q Consensus       274 ----~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~  345 (449)
                          +.    .-=..++++|+++ |..+|+.|...+..+.-.+  ++..     ++..|+..|...+++++...+..+..
T Consensus       340 ~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~  411 (866)
T KOG1062|consen  340 VVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESSDEDFKADIASKIAE  411 (866)
T ss_pred             hhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                01    1123578889999 9999999998888776533  2323     45678888888899999999999999


Q ss_pred             hhccCCHHHHHH-------------HHHcCChHHHHhhccCC
Q 039940          346 ATKAGTQEQIKY-------------LVREGCIKPLCDLLLCA  374 (449)
Q Consensus       346 l~~~~~~~~~~~-------------l~~~~~~~~L~~ll~~~  374 (449)
                      ++..-.++.+..             +++.+++..++.++.+.
T Consensus       412 laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  412 LAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA  453 (866)
T ss_pred             HHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence            888755543322             22344677777777665

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=1.1e-06  Score=85.78  Aligned_cols=389  Identities=14%  Similarity=0.120  Sum_probs=254.6

Q ss_pred             hhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940           17 LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG   96 (449)
Q Consensus        17 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~   96 (449)
                      -..+.+..+..-++.+.+.+.++..++.-+.+++...    .......++++.+.++..+.. ..++..|...+.++..-
T Consensus       232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l  306 (759)
T KOG0211|consen  232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDL  306 (759)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHh
Confidence            3455566666666667788999999998888887543    226677899999999999988 79999999988888762


Q ss_pred             ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-C-----c--------------hhhh-----------
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-P-----G--------------CRNL-----------  145 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~-----~--------------~~~~-----------  145 (449)
                      .....  -....+.+.+++..++++..++.........+...- +     .              -+..           
T Consensus       307 ~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~  384 (759)
T KOG0211|consen  307 LDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC  384 (759)
T ss_pred             cCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence            21111  122245788888888888887777666555554210 0     0              0000           


Q ss_pred             ---------HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 039940          146 ---------VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTL  216 (449)
Q Consensus       146 ---------~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l  216 (449)
                               +.....++.+-.+. .+.++.++...+..+..+.--.+  .........|.....++..++.++.+..+.+
T Consensus       385 ~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~l  461 (759)
T KOG0211|consen  385 YLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKL  461 (759)
T ss_pred             hcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHH
Confidence                     00000111111111 23333333333333333222211  2223356778888888888999999999877


Q ss_pred             HHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940          217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE  296 (449)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  296 (449)
                      ..+-..++...........++.+..+-....++++.+..+.+..++....   ..+++...-+.+...+.+. ...++..
T Consensus       462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~  537 (759)
T KOG0211|consen  462 SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREA  537 (759)
T ss_pred             HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHH
Confidence            66654444333334555677888888777888999999998888875422   3344555666777777777 7889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP  376 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~  376 (449)
                      |+..+..++.....   .......++.++.+...++...|...+.++..++...+.+    +..+.+++.+.++..+..+
T Consensus       538 aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~va  610 (759)
T KOG0211|consen  538 AARNLPALVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVA  610 (759)
T ss_pred             HHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCch
Confidence            99998888752111   1122346777777777777888998888888777654333    3444578999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940          377 EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE  442 (449)
Q Consensus       377 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~  442 (449)
                      .|+..++..|..+...-...                .++....+.++.+-.+++.+++-+|.....
T Consensus       611 nVR~nvak~L~~i~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  611 NVRINVAKHLPKILKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             hhhhhHHHHHHHHHhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            99999999999999876542                234445677777877888887777766544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=1.8e-07  Score=90.90  Aligned_cols=248  Identities=18%  Similarity=0.220  Sum_probs=192.6

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      +.+|.+++.|-|  .--|+.|+..|.+++... .........-|++|.++++|+++. .+++..-+.+.++|..-++.+.
T Consensus       472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            456666666655  345667888888887643 566677778899999999999999 7999999999999998788898


Q ss_pred             HHHHhCCChHHHHHhhCC-C--ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          102 KVLIDHGAVPIFVKLLAS-P--SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~-~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      ..+++.++-.++++.|.. +  +++-|..|+.+|+.++..-+..++.+.+.+.+...+..++.+..+-++..++-||..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            889999889999998876 2  3688999999999999887777788888888888888885545677888899999999


Q ss_pred             hcCCCCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC----hhHHHHH------------HHhCc---HHH
Q 039940          179 CKGKPQPPFD-QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT----NDKIQAV------------IEAGV---CGP  238 (449)
Q Consensus       179 ~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~------------~~~~~---~~~  238 (449)
                      -.+.+..... ...++...|..++..+-++||..++.+|+.+..+.    +++...+            .+.-+   ...
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            9887544443 34778889999999999999999999999988752    2222211            12111   136


Q ss_pred             HHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940          239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI  273 (449)
Q Consensus       239 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  273 (449)
                      ++.++++..+-++.+..-++..+..+.......+.
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            77778888888999988899888877665554443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=9.3e-07  Score=83.86  Aligned_cols=306  Identities=16%  Similarity=0.162  Sum_probs=189.1

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~   97 (449)
                      +...+.+..+++-..++++.+|..|++.+..+   . -+...    .-....+...+++.+ +-++..|+.+..++-..+
T Consensus        82 ~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~~i~----ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~  152 (734)
T KOG1061|consen   82 DLAILAVNTFLKDCEDPNPLIRALALRTMGCL---R-VDKIT----EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID  152 (734)
T ss_pred             hHHHhhhhhhhccCCCCCHHHHHHHhhceeeE---e-ehHHH----HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC
Confidence            33456677777777788888887776655443   2 12111    223667888888888 899999999988887743


Q ss_pred             hhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940           98 SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN  177 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~  177 (449)
                         .+.....|.++.|-.++.++++.+..+|+.+|..+....+...........+..++..+    +.-.-..-+.++..
T Consensus       153 ---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~  225 (734)
T KOG1061|consen  153 ---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDC  225 (734)
T ss_pred             ---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHH
Confidence               45567789999999999999999999999999999876654222222222333444444    22223334455666


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      ++.+.|... .....++..+...+.+.+..+...+...+.++..........+. ..+-+.++.++.... ++..-++.-
T Consensus       226 l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrN  302 (734)
T KOG1061|consen  226 LAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRN  302 (734)
T ss_pred             HHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhh
Confidence            666665544 34456777777888888887777777777766654443222222 255666777766655 555555555


Q ss_pred             HHHhhcCChhhHHH-------------------------HH-hcC---CHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940          258 VGNIVTGDDFQTQC-------------------------VI-NHG---AVPYLLALLINNHKKSIKKESCWTVSNITAGN  308 (449)
Q Consensus       258 l~~l~~~~~~~~~~-------------------------~~-~~~---~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  308 (449)
                      +.-+....+.....                         +. +.+   ++.-+...-..- |.+..+++.+++++++..-
T Consensus       303 i~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~  381 (734)
T KOG1061|consen  303 INLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKA  381 (734)
T ss_pred             HHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhh
Confidence            54444332221100                         00 111   122222222333 6778889999999998643


Q ss_pred             HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          309 RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       309 ~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      ++.      .+++..|++++..+-..+..++...+..+...
T Consensus       382 e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRk  416 (734)
T KOG1061|consen  382 EQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRK  416 (734)
T ss_pred             hhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence            221      46777888888766555666666677776665

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=3.5e-08  Score=89.01  Aligned_cols=282  Identities=15%  Similarity=0.200  Sum_probs=190.7

Q ss_pred             HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcC
Q 039940           59 DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH  138 (449)
Q Consensus        59 ~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  138 (449)
                      ..+.+..+.+.|+++|..++ ..+...+...++|..-..+.-+..+...|+|..++.++.+.+..+|.+..|+++++...
T Consensus       425 TgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn  503 (743)
T COG5369         425 TGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN  503 (743)
T ss_pred             hhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence            34556788999999999988 68888889999999887788889999999999999999999999999999999999865


Q ss_pred             CCch-hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC----CChhh----hhchHHHHHHhhcCCCHHHH
Q 039940          139 SPGC-RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ----PPFDQ----VRPVLPALAQLIHLDDEEVL  209 (449)
Q Consensus       139 ~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~----~~~~l~~l~~ll~~~~~~~~  209 (449)
                      ..+. +-.....-++..++.+. ++++-.++.+++..+.|++.+...    .....    ..-....++..+...+|-..
T Consensus       504 cq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i  582 (743)
T COG5369         504 CQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI  582 (743)
T ss_pred             CcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence            5433 22344566788888888 788889999999999999885421    11111    12355667777777777777


Q ss_pred             HHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhC----C-------CCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940          210 RNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLG----H-------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGA  277 (449)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~----~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  277 (449)
                      ...+..+.+++..++.....+.+. +.+..+...|.    .       ....+...-.....++....+.........  
T Consensus       583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~--  660 (743)
T COG5369         583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT--  660 (743)
T ss_pred             hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC--
Confidence            777888888887766555544443 44444444332    1       011222222222333333222222211100  


Q ss_pred             HHHHHHHhcc---CCchhHHHHHHHHHHHHhc---CC------HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940          278 VPYLLALLIN---NHKKSIKKESCWTVSNITA---GN------RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN  345 (449)
Q Consensus       278 l~~L~~ll~~---~~~~~v~~~a~~~l~nl~~---~~------~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~  345 (449)
                       |.+- .++.   ..+.+.-.+..|.+.|+..   ++      .+.++.+.+.|+-+.+......+++.||+.+-.+|.+
T Consensus       661 -p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~  738 (743)
T COG5369         661 -PHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALEN  738 (743)
T ss_pred             -CCcc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence             1111 1121   1145577788888888764   22      2566677788888888888888899999999999988


Q ss_pred             h
Q 039940          346 A  346 (449)
Q Consensus       346 l  346 (449)
                      +
T Consensus       739 l  739 (743)
T COG5369         739 L  739 (743)
T ss_pred             h
Confidence            6

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.80  E-value=2.4e-05  Score=76.00  Aligned_cols=356  Identities=16%  Similarity=0.201  Sum_probs=202.6

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      -.+++.+...+++.....+...+.++-.+............. ..++..+-.++..++ -.+...|+.++..++...+..
T Consensus       650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesd-lhvt~~a~~~L~tl~~~~ps~  727 (1233)
T KOG1824|consen  650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESD-LHVTQLAVAFLTTLAIIQPSS  727 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHhcccHH
Confidence            456778888888777777777777776665433111111222 223445555666666 688888999999888754443


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHH----hcCC-Cch--hhhH---------------------------
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNI----VAHS-PGC--RNLV---------------------------  146 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l----~~~~-~~~--~~~~---------------------------  146 (449)
                      . .-....+++.++.+++++-  ++-.++.++-++    .... +..  ...+                           
T Consensus       728 l-~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cv  804 (1233)
T KOG1824|consen  728 L-LKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCV  804 (1233)
T ss_pred             H-HHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHH
Confidence            3 3334456777777776532  111111111111    0000 000  0000                           


Q ss_pred             ----h-----hcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 039940          147 ----L-----HEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTL  216 (449)
Q Consensus       147 ----~-----~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l  216 (449)
                          .     .......++.-+. ...+..++..++..++.+-+..+.   ....+.-..+++.+++++.+++.+|..+|
T Consensus       805 A~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---s~~~e~~~~iieaf~sp~edvksAAs~AL  881 (1233)
T KOG1824|consen  805 AALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---SPQNELKDTIIEAFNSPSEDVKSAASYAL  881 (1233)
T ss_pred             HHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---CcchhhHHHHHHHcCCChHHHHHHHHHHh
Confidence                0     0001112222221 123445566666666666555422   22234555788999999999999999999


Q ss_pred             HHcccCChh-HHHHHHHh----------------------------CcHHHHHHhh----CCCCCcchhhHHHHHHHhhc
Q 039940          217 SNLSDGTND-KIQAVIEA----------------------------GVCGPLVELL----GHPSPSVLIPALRTVGNIVT  263 (449)
Q Consensus       217 ~~l~~~~~~-~~~~~~~~----------------------------~~~~~L~~ll----~~~~~~v~~~a~~~l~~l~~  263 (449)
                      ++++.++-+ ....+.+.                            ..++.+..+|    ...+...|.-...|||.++.
T Consensus       882 Gsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l  961 (1233)
T KOG1824|consen  882 GSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL  961 (1233)
T ss_pred             hhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh
Confidence            999985432 22111110                            0111111111    12233455556666666665


Q ss_pred             CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHH
Q 039940          264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL  343 (449)
                      .+++        ..+|.|-..+.++ .+..|..+..++.-.....+..++.+.+ ..+..++.++++++.+||+.|..++
T Consensus       962 ~epe--------sLlpkL~~~~~S~-a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen  962 IEPE--------SLLPKLKLLLRSE-ASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred             CChH--------HHHHHHHHHhcCC-CcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHH
Confidence            5443        3677888888888 8888888777776555544454544444 4677788899999999999999999


Q ss_pred             HHhhccCCHHHHHHHHHcCChHHH----------Hhhc-----cC---CCHHHHHHHHHHHHHHHHhhhhh
Q 039940          344 SNATKAGTQEQIKYLVREGCIKPL----------CDLL-----LC---ADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       344 ~~l~~~~~~~~~~~l~~~~~~~~L----------~~ll-----~~---~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      ...+.+ .+..++.+... +++.|          ++-.     ++   +.-++|+.|.++++.+++.+...
T Consensus      1032 nSaahN-KpslIrDllpe-LLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1032 NSAAHN-KPSLIRDLLPE-LLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred             HHHHcc-CHhHHHHHHHH-HHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhh
Confidence            998876 45444433321 22222          2221     11   22368999999999999988764

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=8.5e-06  Score=69.03  Aligned_cols=271  Identities=14%  Similarity=0.146  Sum_probs=179.3

Q ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940          153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE  232 (449)
Q Consensus       153 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  232 (449)
                      ..++.++ .+.++.++..|+.-+..++......-.......++.+.+++...++  ...+..++.|++....- .+.+++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l-~~~ll~   81 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL-RKKLLQ   81 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH-HHHHHH
Confidence            3567777 8889999999999999998883222222335677888888887766  77888999999976543 344555


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH--h----cCCHHHHHHHhccCCchhH-HHHHHHHHHHHh
Q 039940          233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI--N----HGAVPYLLALLINNHKKSI-KKESCWTVSNIT  305 (449)
Q Consensus       233 ~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~----~~~l~~L~~ll~~~~~~~v-~~~a~~~l~nl~  305 (449)
                      . ++..++..+.++........|..++|++...+.......  .    .+.+........++.+... -...+..++|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            4 888899999888888999999999999987655433322  2    4556666666655533212 234567778886


Q ss_pred             cCCHHHHHHHHHCCChH--HHHHHhhcCchhHHH-HHHHHHHHhhccCCHHHHHHHHHc--CChHHHH------------
Q 039940          306 AGNRKQIQAVIDAGLIV--PLVNLLQDAEFDIKK-EAAWAISNATKAGTQEQIKYLVRE--GCIKPLC------------  368 (449)
Q Consensus       306 ~~~~~~~~~l~~~~~~~--~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~l~~~--~~~~~L~------------  368 (449)
                      . .+..+..+.+...++  .+..+ ..++..+|+ ..+.+|.|++..  ......+...  ++++.|.            
T Consensus       161 ~-~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd--~~~h~~lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  161 Q-FEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFD--AKLHEVLLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             h-hhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhcc--chhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence            5 345555665544322  23322 334445544 456788887663  2333333321  1122111            


Q ss_pred             ---------hhcc-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHH
Q 039940          369 ---------DLLL-----CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGI  433 (449)
Q Consensus       369 ---------~ll~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i  433 (449)
                               +++.     .+|+.++...+++|..++.-...              .+.+++-|+...+..+ ...+++++
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G--------------Re~lR~kgvYpilRElhk~e~ded~  302 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG--------------REVLRSKGVYPILRELHKWEEDEDI  302 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh--------------HHHHHhcCchHHHHHHhcCCCcHHH
Confidence                     2332     35788999999999988865443              7889999999999999 55688999


Q ss_pred             HHHHHHHHHHhcC
Q 039940          434 REKAVTILETYWL  446 (449)
Q Consensus       434 ~~~a~~~i~~~~~  446 (449)
                      .+.+.++.+-...
T Consensus       303 ~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  303 REACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888876554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=3.2e-06  Score=80.32  Aligned_cols=303  Identities=16%  Similarity=0.184  Sum_probs=203.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV  146 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  146 (449)
                      ++.+++=..+++ +.++..|++.++.+-.  +....     .....+...+++.++.+|..+..+..++-..++   +.+
T Consensus        88 vnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~  156 (734)
T KOG1061|consen   88 VNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLV  156 (734)
T ss_pred             hhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhc
Confidence            444444445555 5666666655554443  11111     235677788888999999999988888855543   356


Q ss_pred             hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940          147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ-PPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND  225 (449)
Q Consensus       147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~  225 (449)
                      ...|.+..+-.++ .+.++.|..+|+.++..+....+. .........+..++..+..-+..-+..++.++.+-...++.
T Consensus       157 ~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~  235 (734)
T KOG1061|consen  157 EDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSR  235 (734)
T ss_pred             cccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCch
Confidence            6788888888888 688999999999999999988764 34444466666777777666777777777777776655442


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940          226 KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       226 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  305 (449)
                      ...     .+++.+...+.+.++.+...+...+.++........ ..+-..+-+.++.++.+. . +++.-|..-+.-+.
T Consensus       236 ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil  307 (734)
T KOG1061|consen  236 EAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLIL  307 (734)
T ss_pred             hHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHH
Confidence            222     456788888999999999999999988876544422 233345667777777766 3 55555544444333


Q ss_pred             cCCHHHHH-------------------------HHHH-CC---ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940          306 AGNRKQIQ-------------------------AVID-AG---LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK  356 (449)
Q Consensus       306 ~~~~~~~~-------------------------~l~~-~~---~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  356 (449)
                      ...|....                         .+.. .+   ++..+.......+.+....+.+|+++++....+.   
T Consensus       308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---  384 (734)
T KOG1061|consen  308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---  384 (734)
T ss_pred             HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---
Confidence            33332111                         0111 11   2333333334458889999999999998853221   


Q ss_pred             HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          357 YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       357 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                          ++.+..|+++++.+-..+.+.++..++.+++..++.
T Consensus       385 ----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  385 ----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             ----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence                568999999999888888888888999999888775

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=2.8e-05  Score=72.38  Aligned_cols=313  Identities=16%  Similarity=0.196  Sum_probs=204.3

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ...++.+++.+.-+.+++|.....+|..+..........     .+.+.+.+++..++ ..-+..+.+.+..+..+.  .
T Consensus        95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~  166 (569)
T KOG1242|consen   95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--G  166 (569)
T ss_pred             hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--H
Confidence            356678888888888999999888888775443222222     34677888899777 677888888888888743  4


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHH-HHHHHHHHHHHhcC-CCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDV-REQAVWALGNIVAH-SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~-~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      ...+.+.+++..+.....+..... ++.++.+....++. .+.....+  ...++.++... .+..+.++..+..+...+
T Consensus       167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi--v~~lp~il~~~-~d~~~~Vr~Aa~~a~kai  243 (569)
T KOG1242|consen  167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI--VPILPSILTNF-GDKINKVREAAVEAAKAI  243 (569)
T ss_pred             HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH--HhhHHHHHHHh-hccchhhhHHHHHHHHHH
Confidence            455666788999999988754333 33333333333221 12221122  12344555555 566778888877777666


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      .+.-+..   .+...+|.++.-+.......+..++..++.++...+.+... .-..++|.+...|.+.+++++..+..++
T Consensus       244 ~~~~~~~---aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~~~l  319 (569)
T KOG1242|consen  244 MRCLSAY---AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGIETL  319 (569)
T ss_pred             HHhcCcc---hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence            5543221   22344555555555557788889999999998888776664 4448999999999999999999999999


Q ss_pred             HHhhcCChh-hHHHHH------------------------------hcCCHHHHHHHhccC---CchhHHHHHHHHHHHH
Q 039940          259 GNIVTGDDF-QTQCVI------------------------------NHGAVPYLLALLINN---HKKSIKKESCWTVSNI  304 (449)
Q Consensus       259 ~~l~~~~~~-~~~~~~------------------------------~~~~l~~L~~ll~~~---~~~~v~~~a~~~l~nl  304 (449)
                      .+++..-+. .++.++                              +...+..++.+++.+   .+..+++.++..+.|+
T Consensus       320 ~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm  399 (569)
T KOG1242|consen  320 LKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM  399 (569)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence            888753211 111111                              111233334444322   1456788899999999


Q ss_pred             hc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          305 TA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       305 ~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      +.  .++.....++. .++|.|-..+.+..|++|..+..+|+.+...
T Consensus       400 ~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  400 CKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             HHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            87  34555444443 3677777777777899999999999988875

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.76  E-value=6e-07  Score=80.01  Aligned_cols=269  Identities=14%  Similarity=0.067  Sum_probs=183.1

Q ss_pred             hhcHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           21 LEILPAMVAGVWSDDN--SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      .|++..+++++.+++.  +++.+|.+.|.++..   .++.+.+...| +..++.+-+.....+.+...+.+|.++..+++
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            4778899999998774  569999999999876   46667776666 55555555555447899999999999999999


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN  177 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~  177 (449)
                      +....++..|+++.++--....++.+..+|.-+|+|++-+. ...+..+.+..+-..++.+. .+.|+-.+.+||.+...
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~v  333 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAV  333 (832)
T ss_pred             HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhh
Confidence            99999999999999999888888999999999999998433 34555565666666666555 56678889999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      ++............+.+..+-.++.+-|+.-...-   -...+.+.        ..+-++.|+.+|++...+.+.-+.+-
T Consensus       334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD---~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~  402 (832)
T KOG3678|consen  334 LATNKEVEREVRKSGTLALVEPLVASLDPGRFARD---AHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFY  402 (832)
T ss_pred             hhhhhhhhHHHhhccchhhhhhhhhccCcchhhhh---hhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHH
Confidence            98887444444445666666666665555322210   00111111        11346788888886655444443333


Q ss_pred             HHHhhcC--ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          258 VGNIVTG--DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       258 l~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      +..=+..  -....+.+.+-|.++.|-++.+++ +..-.+.|-.+|.-+..
T Consensus       403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence            3222111  112233455778999999999877 66555555556655543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=6.4e-06  Score=69.75  Aligned_cols=271  Identities=15%  Similarity=0.183  Sum_probs=175.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHH--HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEV--IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      +..++.++++.+|.++..|...+..+...    ..+.+  .+...++.+.+++.... +  ...|+.++.|++. .+..+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence            45788999999999999999988888543    11211  23345778888988877 4  6789999999998 67788


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhc-----CCHHHHHHHHcccc-c-HHHHHHHHHH
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHE-----EALIPLLAQLNEHA-R-LSMLRIGTWT  174 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~-~-~~~~~~a~~~  174 (449)
                      +.+++. ++..++..+.++...+....+..|.|++++...........     .++..++..+.+.. + ..-..+.+.+
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            888776 78888888888877788888999999998876655444321     23334444332322 2 1335567788


Q ss_pred             HHHhhcCCCCCChhhhhchH--HHHHHhhcCCCHHHHH-HHHHHHHHcccCChhHHHHHHHh--CcHHHHHH-h------
Q 039940          175 LSNLCKGKPQPPFDQVRPVL--PALAQLIHLDDEEVLR-NVCWTLSNLSDGTNDKIQAVIEA--GVCGPLVE-L------  242 (449)
Q Consensus       175 l~~l~~~~~~~~~~~~~~~l--~~l~~ll~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~-l------  242 (449)
                      +.|+++....+........+  +.+..+-. .+..+|+ .++.+|.|.|........ ++..  .+++.++- +      
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence            88888876444443333322  23333333 5666655 577888888866543322 2221  22332222 1      


Q ss_pred             --------------hC-----CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940          243 --------------LG-----HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN  303 (449)
Q Consensus       243 --------------l~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  303 (449)
                                    +.     .+++.++..-+.+|..+|.- ...++.+...|+.+.+-.+=+...+++++...-.....
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                          11     24567899999999888875 55666777777777777666655466666655555554


Q ss_pred             Hhc
Q 039940          304 ITA  306 (449)
Q Consensus       304 l~~  306 (449)
                      +..
T Consensus       313 Lv~  315 (353)
T KOG2973|consen  313 LVR  315 (353)
T ss_pred             HHh
Confidence            544

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=1.4e-07  Score=85.29  Aligned_cols=311  Identities=13%  Similarity=0.093  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCC
Q 039940          126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLD  204 (449)
Q Consensus       126 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~  204 (449)
                      .+++.+|..+++.-...|.-+.+..+.+.+++.| .+++..+...+...+.|+.-.. +-.......+++..++.++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            3444556666655555666677778888999999 6666666666777777776655 3344555689999999999999


Q ss_pred             CHHHHHHHHHHHHHcccCChhHHH-HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh---hHHHHHhc----C
Q 039940          205 DEEVLRNVCWTLSNLSDGTNDKIQ-AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCVINH----G  276 (449)
Q Consensus       205 ~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~----~  276 (449)
                      |..++.+..|.+.++..+..+..+ .....-++..++.+..+++..++...+..+.|+.+....   ....+++.    -
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999999877554322 244446779999999999999999999999999874332   22222221    2


Q ss_pred             CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcC-----------chhHHHHHHHHHH
Q 039940          277 AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDA-----------EFDIKKEAAWAIS  344 (449)
Q Consensus       277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~-----------~~~v~~~a~~aL~  344 (449)
                      ..+.+++.+... +|-.-...++.|.+++..+......+.+ ..++..+...+...           ...+-..-..+..
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            566777777777 7777777799999998865554444443 34444444444221           1122222222333


Q ss_pred             HhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHH
Q 039940          345 NATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIE  423 (449)
Q Consensus       345 ~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  423 (449)
                      ++..+.  +..++... ..-....-+--.+++.++-....|.+.++....+..+-.    ....+-++.+...|.-+-++
T Consensus       645 ~l~e~~--d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e~l~  718 (743)
T COG5369         645 NLSENS--DKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIREWLV  718 (743)
T ss_pred             cccccc--cccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHHHHH
Confidence            333321  11111110 000111111112235566777777777754333222110    11223577888899999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHh
Q 039940          424 DLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       424 ~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      .++.++++.+++++-..++..
T Consensus       719 k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         719 KIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHhccCcHHHHHHHHHHHHhh
Confidence            999999999999999988753

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=9.7e-06  Score=76.28  Aligned_cols=216  Identities=16%  Similarity=0.166  Sum_probs=164.5

Q ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940          152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI  231 (449)
Q Consensus       152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  231 (449)
                      -+-++.+| .++-+-++..|...+..++...|    .....++|.+..-|.++|+.++..+...++.|++.+|.+.-   
T Consensus       146 a~Dv~tLL-~sskpYvRKkAIl~lykvFLkYP----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---  217 (877)
T KOG1059|consen  146 ADDVFTLL-NSSKPYVRKKAILLLYKVFLKYP----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---  217 (877)
T ss_pred             HHHHHHHH-hcCchHHHHHHHHHHHHHHHhhh----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence            34677888 78889999999999999887664    44568899999999999999999999999999998886433   


Q ss_pred             HhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHH--HHhcC-
Q 039940          232 EAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVS--NITAG-  307 (449)
Q Consensus       232 ~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~--nl~~~-  307 (449)
                        .+.|.+..+|.+ ++.-+....+..+++++-..+...     .+++++|..++.+..-..+..++..++.  ++..+ 
T Consensus       218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~  290 (877)
T KOG1059|consen  218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM  290 (877)
T ss_pred             --cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence              466888888876 445578888999999987655433     4688999999988744556666554443  33333 


Q ss_pred             -C-HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940          308 -N-RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG  385 (449)
Q Consensus       308 -~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~  385 (449)
                       + ...++.     .+..|-.++.+.|+.++--++-|++.++.. .+..++.     --+.++++|.+.|+.++..|+..
T Consensus       291 ~d~~asiqL-----CvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdL  359 (877)
T KOG1059|consen  291 SDHSASIQL-----CVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPKAVQA-----HKDLILRCLDDKDESIRLRALDL  359 (877)
T ss_pred             CCcHHHHHH-----HHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHHHHHH-----hHHHHHHHhccCCchhHHHHHHH
Confidence             1 122222     456777888899999999999999999876 3444443     35678899999999999999999


Q ss_pred             HHHHHHhh
Q 039940          386 LENILKVG  393 (449)
Q Consensus       386 l~~l~~~~  393 (449)
                      ++-+....
T Consensus       360 l~gmVskk  367 (877)
T KOG1059|consen  360 LYGMVSKK  367 (877)
T ss_pred             HHHHhhhh
Confidence            99888654

>PF05536 Neurochondrin: Neurochondrin

Probab=98.69  E-value=6.5e-05  Score=72.19  Aligned_cols=383  Identities=16%  Similarity=0.093  Sum_probs=226.4

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHH
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLP--IDEVIQAGIVPRFVEFLLRED------YPRLQFEAAWVLTN   92 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~ll~~~~------~~~~~~~a~~~L~~   92 (449)
                      ...+...+.+|++.+.+-++.++-.+.+++.......  .+.+.+.=+.+.+-++|.++.      ....+.-|+.+|..
T Consensus         4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            3567888999999888888999999999987542111  234667666788888888722      25677889999999


Q ss_pred             hcCCChhhhHHHHhCCChHHHHHhhCCCCh-HHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHH
Q 039940           93 IASGTSVNTKVLIDHGAVPIFVKLLASPSD-DVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIG  171 (449)
Q Consensus        93 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  171 (449)
                      +|. .++....---.+-||.|++.+.+.+. .+...|+.+|..++ ..+..+..+.+.|.++.+...+.+  .+...+.+
T Consensus        84 f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A  159 (543)
T PF05536_consen   84 FCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA  159 (543)
T ss_pred             HcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence            998 55544222223569999999987766 99999999999998 566778888899999999999844  55667888


Q ss_pred             HHHHHHhhcCCCCC----ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH-HHHH----HHhCcHHHHHHh
Q 039940          172 TWTLSNLCKGKPQP----PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK-IQAV----IEAGVCGPLVEL  242 (449)
Q Consensus       172 ~~~l~~l~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~----~~~~~~~~L~~l  242 (449)
                      +.++.+++......    .......+++.+...+.......+-..+..+..+....+.. ....    .-..+...+..+
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            88888887765321    12222455666666666666667777888888877655311 0111    111344455555


Q ss_pred             hCCC-CCcchhhHHHHHHHhhcCChhhHHHHHhc-----CCHHHHHH---------------HhccCCch----------
Q 039940          243 LGHP-SPSVLIPALRTVGNIVTGDDFQTQCVINH-----GAVPYLLA---------------LLINNHKK----------  291 (449)
Q Consensus       243 l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----~~l~~L~~---------------ll~~~~~~----------  291 (449)
                      +++. .+.-|..++...+.+....... ..+.+.     .++-.+++               ..+.+...          
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~~~G~~-wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf  318 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLDLLGPE-WLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF  318 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhChH-hhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence            6553 4455666666666664321100 000011     11111111               11111001          


Q ss_pred             hHHHHHHHHHHHHhc-----CCHHHHHHHHH--CCChHHHHHHhhcC------chhHHHHHHHHHHHhhccCCHHHHHHH
Q 039940          292 SIKKESCWTVSNITA-----GNRKQIQAVID--AGLIVPLVNLLQDA------EFDIKKEAAWAISNATKAGTQEQIKYL  358 (449)
Q Consensus       292 ~v~~~a~~~l~nl~~-----~~~~~~~~l~~--~~~~~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l  358 (449)
                      .+.+.....+.+-..     -.++....+..  .+.+...+.+|.+-      ++.....+.++|+......+...++.+
T Consensus       319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v  398 (543)
T PF05536_consen  319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV  398 (543)
T ss_pred             HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            111112222222111     12333333332  23455555555432      333666778888877775444444544


Q ss_pred             HHcCChHHHHhhccCCCH----------HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHH
Q 039940          359 VREGCIKPLCDLLLCADP----------EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED  424 (449)
Q Consensus       359 ~~~~~~~~L~~ll~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  424 (449)
                        .+.++.++.+.+....          +.+...+=+|..+....+              -++.+...||.+.+.+
T Consensus       399 --~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~--------------gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  399 --YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE--------------GRKILLSNGGWKLLCD  458 (543)
T ss_pred             --HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH--------------HHHHHHhCCcHHHHHH
Confidence              3588888888765322          345556666666664333              3566666777555543

>TIGR02270 conserved hypothetical protein

Probab=98.68  E-value=1.2e-05  Score=74.05  Aligned_cols=243  Identities=16%  Similarity=0.036  Sum_probs=166.3

Q ss_pred             hcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           22 EILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        22 ~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .+++.++..|. .++..+...++..+...   . ..        ..+..|++.+.+.+ +.++..++..|+.+-.  +  
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~--~--  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ---E-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG--R--  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc---C-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc--h--
Confidence            34667777774 45666766655554322   1 11        12788888898888 7899999988886554  1  


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                             +..+.|+.++.+.++.++..++.+++..-            ....+.+...+ ++.++.++..++.++..+-.
T Consensus       117 -------~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       117 -------QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPR  176 (410)
T ss_pred             -------HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence                   45688888898888999988887777621            12344677777 68889999999999988776


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 039940          181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN  260 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~  260 (449)
                      .          ..++.|...+.+.++.++..+++++..+-.  +         .....+..+...........+...+..
T Consensus       177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal  235 (410)
T TIGR02270       177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV  235 (410)
T ss_pred             c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence            5          456677788888999999999998876642  2         123344443344444444343333333


Q ss_pred             hhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHH
Q 039940          261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAA  340 (449)
Q Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~  340 (449)
                      .  +.+         ..++.|..+++++   .++..++++++.+-  .+         ..++.|+..+.+.  .++..|.
T Consensus       236 ~--~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg--~p---------~av~~L~~~l~d~--~~aR~A~  288 (410)
T TIGR02270       236 A--GGP---------DAQAWLRELLQAA---ATRREALRAVGLVG--DV---------EAAPWCLEAMREP--PWARLAG  288 (410)
T ss_pred             C--Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcC--Cc---------chHHHHHHHhcCc--HHHHHHH
Confidence            2  111         4677888888866   38999999999773  23         2677788777644  4999999


Q ss_pred             HHHHHhhcc
Q 039940          341 WAISNATKA  349 (449)
Q Consensus       341 ~aL~~l~~~  349 (449)
                      .++..|+--
T Consensus       289 eA~~~ItG~  297 (410)
T TIGR02270       289 EAFSLITGM  297 (410)
T ss_pred             HHHHHhhCC
Confidence            999999864

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.66  E-value=1.3e-05  Score=74.19  Aligned_cols=337  Identities=15%  Similarity=0.127  Sum_probs=212.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh--hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940           66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV--NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      ++...+.+|++.. ++++..|+...+.++.--..  ....+...|  ..|.+.+....+++.-..+.++..+..... ++
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            3556677888888 89999999887776641110  122333344  457777888888888777777776643211 11


Q ss_pred             hhH-hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhh-hchHHHHHHhhcCCCHHHHHHHHHHHHHccc
Q 039940          144 NLV-LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQV-RPVLPALAQLIHLDDEEVLRNVCWTLSNLSD  221 (449)
Q Consensus       144 ~~~-~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~  221 (449)
                      .+- --.|.+|.+...| .+....+..+....+..+|...|....... -.+---|+.+|.+.+.+++++|..+++.+++
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            000 1256788888888 677788999999999999998865432221 2233346777788899999999999998875


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHH
Q 039940          222 GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTV  301 (449)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  301 (449)
                      .-.       -.+++..|+.-|+..+...|....-+++..+..+.       ...++|.|+.=-..+ +..|+.-...++
T Consensus       760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            422       22456667666666655555444444444433221       123667777666667 777888888777


Q ss_pred             HHHhcCC-HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHH-HHHHHHHcCChHHHHhhccCCCHHHH
Q 039940          302 SNITAGN-RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE-QIKYLVREGCIKPLCDLLLCADPEIV  379 (449)
Q Consensus       302 ~nl~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~  379 (449)
                      +-+.... ....+++.  -+.|.|-+.+.+.|+.-|..|...+.+++.++... ....++.  ++..|..-+-++.|.+.
T Consensus       825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi  900 (975)
T COG5181         825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI  900 (975)
T ss_pred             HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence            7765421 12222332  37788888999999999999999999999874211 1111111  23333333445678887


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          380 TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       380 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      ....+++..+...-...               .     .+..+++=.-|++..+++..-...+.+|-
T Consensus       901 ~~~~Eg~e~~~~~lg~g---------------~-----~m~Yv~qGLFHPs~~VRk~ywtvyn~myv  947 (975)
T COG5181         901 QSFDEGMESFATVLGSG---------------A-----MMKYVQQGLFHPSSTVRKRYWTVYNIMYV  947 (975)
T ss_pred             HHHHHHHHHHHHHhccH---------------H-----HHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence            77777776655433221               1     24455666778888888888777776553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.66  E-value=9e-07  Score=78.93  Aligned_cols=186  Identities=16%  Similarity=0.166  Sum_probs=148.4

Q ss_pred             HHHHHhCcHHHHHHhhCCCCCc--chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940          228 QAVIEAGVCGPLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       228 ~~~~~~~~~~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  305 (449)
                      +.+...|+++.|+.++..++.+  ++.++...|..+..  .++.+.+...| +..++.+.+..+.++.....+..|.++.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            3345558999999999998755  58999999988765  33444455444 6666666655546788899999999999


Q ss_pred             cCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940          306 AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG  385 (449)
Q Consensus       306 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~  385 (449)
                      .++++....++..|++..++-.....+|.+...++.+|+|++.++..+..+.+++...-+.|.-+-.+.|+-++..++-+
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA  330 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA  330 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence            99999999999999999999989988999999999999999999999999999999999999999988988889888888


Q ss_pred             HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCC
Q 039940          386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGN  430 (449)
Q Consensus       386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  430 (449)
                      ...+....+              +-...+.+|-+..++.+..+-+
T Consensus       331 V~vlat~KE--------------~E~~VrkS~TlaLVEPlva~~D  361 (832)
T KOG3678|consen  331 VAVLATNKE--------------VEREVRKSGTLALVEPLVASLD  361 (832)
T ss_pred             Hhhhhhhhh--------------hhHHHhhccchhhhhhhhhccC
Confidence            888876554              3444556666666665544433

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.65  E-value=1.6e-05  Score=72.35  Aligned_cols=328  Identities=15%  Similarity=0.074  Sum_probs=202.4

Q ss_pred             CCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc-ccHHHHHHHHH
Q 039940           95 SGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH-ARLSMLRIGTW  173 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~  173 (449)
                      ...++-+..+.-....+.+..++-+++.++|..+.++++.+..+... -..+.+.+.--.++.-+..+ ....=+++|+.
T Consensus        12 ~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALk   90 (371)
T PF14664_consen   12 KRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALK   90 (371)
T ss_pred             HhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHH
Confidence            33444444433333445555455455599999999999999877644 34444555544555555443 34455789999


Q ss_pred             HHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh
Q 039940          174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP  253 (449)
Q Consensus       174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~  253 (449)
                      .+..+..... .......+++..++.+..+.++..+..++.++..++-.+++   .+...|++..+...+.++..++...
T Consensus        91 liR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~  166 (371)
T PF14664_consen   91 LIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISES  166 (371)
T ss_pred             HHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHH
Confidence            9988887742 22233468889999999999999999999999999988874   4678899999999998866667778


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHH-H-CCChHH
Q 039940          254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN------HKK--SIKKESCWTVSNITAGNRKQIQAVI-D-AGLIVP  323 (449)
Q Consensus       254 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~-~-~~~~~~  323 (449)
                      .+.++..+... +..++.+...--++.++.-+.+.      .+.  +.-..+..++..+...=+-.. .+. + ...+..
T Consensus       167 l~~~lL~lLd~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~~~~~~lks  244 (371)
T PF14664_consen  167 LLDTLLYLLDS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSMNDFRGLKS  244 (371)
T ss_pred             HHHHHHHHhCC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeecCCchHHHH
Confidence            88888888765 44444444433455555444332      022  233445555555544211111 111 1 147888


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH------HcCCh---HHHHhhccCCC---HHHHHHHHHHHHHHHH
Q 039940          324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV------REGCI---KPLCDLLLCAD---PEIVTVCLKGLENILK  391 (449)
Q Consensus       324 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~------~~~~~---~~L~~ll~~~~---~~~~~~~~~~l~~l~~  391 (449)
                      |++.|..+++++|+.....+..+..-..+.....+.      ..|-.   ..+..-..+..   +.....-...+.++..
T Consensus       245 Lv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a  324 (371)
T PF14664_consen  245 LVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA  324 (371)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH
Confidence            999999999999999999999988764332222111      11111   00110000000   0000011112222211


Q ss_pred             hhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 039940          392 VGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG-NNGIREKAVTILETYW  445 (449)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~i~~~a~~~i~~~~  445 (449)
                                      -....|.++|.++.|..+..+. ++.+..+|..++.+++
T Consensus       325 ----------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  325 ----------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             ----------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence                            1356778999999999996665 8999999999988765

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=0.00021  Score=68.37  Aligned_cols=256  Identities=17%  Similarity=0.182  Sum_probs=149.5

Q ss_pred             hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCH
Q 039940           73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEAL  152 (449)
Q Consensus        73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  152 (449)
                      ...++. +.++..|+.++-++-.-+++....+     +..+-.+|.+.++.+.-.|+.++-.+|-+.   -+.+  .+-.
T Consensus       151 ~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hkny  219 (968)
T KOG1060|consen  151 AVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNY  219 (968)
T ss_pred             HhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHH
Confidence            344555 6777777777777777666655533     456667777777888888888877776432   2222  2334


Q ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCC-------------------------C---hhhhhchHHHHHHhhcC
Q 039940          153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQP-------------------------P---FDQVRPVLPALAQLIHL  203 (449)
Q Consensus       153 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~-------------------------~---~~~~~~~l~~l~~ll~~  203 (449)
                      ..+++++ .+-++==+......|..-++.. +.+                         .   ..-..-++.-.-.++.+
T Consensus       220 rklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S  298 (968)
T KOG1060|consen  220 RKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS  298 (968)
T ss_pred             HHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence            4555555 2222111222233333333322 111                         0   00112344555567778


Q ss_pred             CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHH------------
Q 039940          204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC------------  271 (449)
Q Consensus       204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~------------  271 (449)
                      .++.+...++.+...++....  ..     .+++.|+.+|.. +.+++.-.+..+..++...+.....            
T Consensus       299 ~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp  370 (968)
T KOG1060|consen  299 RNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP  370 (968)
T ss_pred             CCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCH
Confidence            899999999999999885432  12     456788887754 4456666666666666443322111            


Q ss_pred             ----HH---------hc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940          272 ----VI---------NH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD  334 (449)
Q Consensus       272 ----~~---------~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  334 (449)
                          ++         ..    .+++-+-..+++. +..+...|..+|+.++...-.     +...++..|+.++.+++..
T Consensus       371 ~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~  444 (968)
T KOG1060|consen  371 TQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDEL  444 (968)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccch
Confidence                11         11    1233334444555 556777788888888753322     2234677888899998889


Q ss_pred             HHHHHHHHHHHhhccCCHHH
Q 039940          335 IKKEAAWAISNATKAGTQEQ  354 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~~~  354 (449)
                      |..++...+..+......++
T Consensus       445 Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  445 VVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             hHHHHHHHHHHHHhhChHHH
Confidence            99999999998888744444

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=0.00027  Score=67.67  Aligned_cols=364  Identities=13%  Similarity=0.123  Sum_probs=221.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHH-HhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940           25 PAMVAGVWSDDNSMQLEAATQFRR-LLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKV  103 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  103 (449)
                      ..|.++|.|........|..-+.. ++.+.  + .     +..+|.+++...+.+ .+++...---|...+...++-.  
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~--d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--  106 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGK--D-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--  106 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCC--c-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence            468889999888888888765554 44442  2 2     335788999999999 8999888877888887544321  


Q ss_pred             HHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC
Q 039940          104 LIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP  183 (449)
Q Consensus       104 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~  183 (449)
                      +   =-|..+-+-|.++|+.+|..|++++..+ +. |...      +++-.-++.+..+..+.|+..|+.++-.+-+-++
T Consensus       107 L---LSIntfQk~L~DpN~LiRasALRvlSsI-Rv-p~Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~  175 (968)
T KOG1060|consen  107 L---LSINTFQKALKDPNQLIRASALRVLSSI-RV-PMIA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP  175 (968)
T ss_pred             e---eeHHHHHhhhcCCcHHHHHHHHHHHHhc-ch-hhHH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh
Confidence            1   2378899999999999999998888876 11 1111      1222223334478889999999999999988765


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940          184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT  263 (449)
Q Consensus       184 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~  263 (449)
                      ....    .++..+-.+|.+.++.+.-.++.+.-.+|-..-+...     +-...+..++.+-+.--+.-.+..|..-|+
T Consensus       176 e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  176 EQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             hhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence            4433    5667777888888999999999999888855433222     334556666655443334444444444432


Q ss_pred             CC---hhhHH---------------------HHHhcC----CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          264 GD---DFQTQ---------------------CVINHG----AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       264 ~~---~~~~~---------------------~~~~~~----~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                      ..   +....                     .+....    +++..-.++.+. ++.|.-.++.+...++..+.      
T Consensus       247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~~------  319 (968)
T KOG1060|consen  247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKNQ------  319 (968)
T ss_pred             hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHHH------
Confidence            20   10000                     000000    123334455666 77788888888887765331      


Q ss_pred             HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC----------------CHHHHH--------HHHHcCC----hHHH
Q 039940          316 IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG----------------TQEQIK--------YLVREGC----IKPL  367 (449)
Q Consensus       316 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~--------~l~~~~~----~~~L  367 (449)
                       ..++++.|+++|.+ +..+|...+..+..++...                ++.+.+        .+.+++-    +.-+
T Consensus       320 -~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~  397 (968)
T KOG1060|consen  320 -VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL  397 (968)
T ss_pred             -HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence             12467788887765 4466766676766666541                111111        1222222    2223


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          368 CDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       368 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      ..+.++.|..+...++.+|..........                  ....++-|.++..+.+..+-..+...|.++..
T Consensus       398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv------------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  398 QTYIKSSDRSFAAAAVKAIGRCASRIGSV------------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHhhCch------------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence            33344455555555666665555433221                  12236777888777788887777777777643

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=6.2e-06  Score=76.81  Aligned_cols=223  Identities=12%  Similarity=0.111  Sum_probs=150.6

Q ss_pred             HHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC-----hhHHHH
Q 039940          155 LLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT-----NDKIQA  229 (449)
Q Consensus       155 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~  229 (449)
                      +..+. ++.|..|+.+|+..+..|....     .....+....++.+.+++..++..|+..+.......     .+..+.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 7788888999988888887743     112345566788888889999998866655443222     111121


Q ss_pred             HHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC--
Q 039940          230 VIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG--  307 (449)
Q Consensus       230 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--  307 (449)
                      -....++..+...+.+.+..+|..|..+|+.+-..+++...+.++.+++..+-..-...+.++-..    .=+.+++|  
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~----s~GewSsGk~  352 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY----SSGEWSSGKE  352 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH----hcCCcccCcc
Confidence            222256788889999999999999999999998777777766666555543332221110111111    11111111  


Q ss_pred             ---------CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHH
Q 039940          308 ---------NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI  378 (449)
Q Consensus       308 ---------~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~  378 (449)
                               .++.-..++..|.--.++.-+.++=.+||.+|...++.++.. .+.+...     .+..|++++.++...+
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHHHHH
Confidence                     112233466677777888888888889999999999999986 4554433     6889999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 039940          379 VTVCLKGLENILKVG  393 (449)
Q Consensus       379 ~~~~~~~l~~l~~~~  393 (449)
                      +..|+.+|..+....
T Consensus       427 RL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  427 RLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999888764

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.52  E-value=3.2e-06  Score=62.28  Aligned_cols=154  Identities=8%  Similarity=0.011  Sum_probs=123.8

Q ss_pred             CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940          277 AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK  356 (449)
Q Consensus       277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  356 (449)
                      .+..|+.-.....+.+.+.....-|+|++. +|.+...+.+.++++.+++.+...+..+++.++.+|+|++.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            344555555544478889998888999965 56778888899999999999999999999999999999998  678889


Q ss_pred             HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHH
Q 039940          357 YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREK  436 (449)
Q Consensus       357 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~  436 (449)
                      .+.+.++++.++..++++...+...++..+..+...+..             +...+-.-..++.++....+.+-+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999988888888888766644333             3445555566777888877777888888


Q ss_pred             HHHHHHHhcC
Q 039940          437 AVTILETYWL  446 (449)
Q Consensus       437 a~~~i~~~~~  446 (449)
                      |...++.+..
T Consensus       161 a~~fl~~~~~  170 (173)
T KOG4646|consen  161 ASAFLDKHVH  170 (173)
T ss_pred             HHHHHHhhcc
Confidence            8888887654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=0.00015  Score=71.49  Aligned_cols=303  Identities=12%  Similarity=0.168  Sum_probs=199.6

Q ss_pred             hhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           21 LEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        21 ~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      .|.++-++-.+.+ .++.++..|+..+..+...  .+....+...|++..|+.+|.+..  ..+..++.+|..+++ +++
T Consensus      1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~P--S~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQP--SMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred             hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcCh--HHHHHHHHHHHHHhc-CcH
Confidence            4556666666664 6788999999888777543  788889999999999999998864  788999999999998 677


Q ss_pred             hhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCC---CchhhhHhh----------cCCHHHHHHHHcc-ccc
Q 039940          100 NTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHS---PGCRNLVLH----------EEALIPLLAQLNE-HAR  164 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~l~~~l~~-~~~  164 (449)
                      ....-.+.|++..+..++- +.++..|.+++..++.+..+.   |..+-.+++          ...-...+..+.. +++
T Consensus      1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred             HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence            7777778888888887764 567899999999999997543   211111100          0011233333321 122


Q ss_pred             HH------HHHHHHHHHHHhhcC----C---C--------------------------------------CCChhhhhch
Q 039940          165 LS------MLRIGTWTLSNLCKG----K---P--------------------------------------QPPFDQVRPV  193 (449)
Q Consensus       165 ~~------~~~~a~~~l~~l~~~----~---~--------------------------------------~~~~~~~~~~  193 (449)
                      ++      .+......+..+..+    .   |                                      ........+.
T Consensus      1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence            22      222222222222110    0   0                                      0111223455


Q ss_pred             HHHHHHhhcCCC--HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHH
Q 039940          194 LPALAQLIHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC  271 (449)
Q Consensus       194 l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~  271 (449)
                      +..+..++..++  .....-...++..+.+..+...+.+-..|.+|.++..+...+..+-..|+++|..++.. .-..+.
T Consensus      2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDA 2083 (2235)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHH
Confidence            556666665443  22233333444555566666666666679999999999998888889999999999875 445555


Q ss_pred             HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcC
Q 039940          272 VINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDA  331 (449)
Q Consensus       272 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~  331 (449)
                      +.....+..++..|+..  +...--|+.+|..+.. ...+.....++.|.+|.|+.+|...
T Consensus      2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            66666777788888765  3344577888887765 4456677778899999999999754

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=0.00092  Score=63.36  Aligned_cols=296  Identities=17%  Similarity=0.171  Sum_probs=182.4

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940           69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP--SDDVREQAVWALGNIVAHSPGCRNLV  146 (449)
Q Consensus        69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~  146 (449)
                      .+-.=|.+.+ +.....|+.+++|+..  .+.+..+..  =|+   ++|-++  ..-++..++-+|..+-+.+|..   +
T Consensus       115 ~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~  183 (938)
T KOG1077|consen  115 SIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---V  183 (938)
T ss_pred             HHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---c
Confidence            3334455666 6788889999999986  445554432  134   555543  3667888888888887776653   3


Q ss_pred             hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-------------CCHHHHHHHH
Q 039940          147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-------------DDEEVLRNVC  213 (449)
Q Consensus       147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-------------~~~~~~~~~~  213 (449)
                      ...+....++.+| ++.+..+...+...+..++...|.........++..|......             +.|.+...++
T Consensus       184 ~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~  262 (938)
T KOG1077|consen  184 NPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL  262 (938)
T ss_pred             ChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence            2334577888888 6666777778888888888877655444444444444444321             3577888888


Q ss_pred             HHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC----C---CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc
Q 039940          214 WTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP----S---PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI  286 (449)
Q Consensus       214 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~----~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~  286 (449)
                      +.|.+.-...+.....-. ..+++.++...+.+    +   ...+...++-.-+++.+.+...+.+.  ..+..|-+++.
T Consensus       263 rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls  339 (938)
T KOG1077|consen  263 RLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLS  339 (938)
T ss_pred             HHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhh
Confidence            888887433332222111 13445555444421    1   11222333333444444343333332  35778888898


Q ss_pred             cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh-cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChH
Q 039940          287 NNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ-DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK  365 (449)
Q Consensus       287 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~  365 (449)
                      +. ...+|.-|...++.++... .....+-.+  .+.++..|+ ..|..+|+.|...|..++..   ++.+.     .+.
T Consensus       340 ~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~-----IV~  407 (938)
T KOG1077|consen  340 HR-ETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQ-----IVA  407 (938)
T ss_pred             cc-cccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHH-----HHH
Confidence            88 8889999999888887642 223333332  677888888 55999999999999999865   44444     355


Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940          366 PLCDLLLCADPEIVTVCLKGLENILK  391 (449)
Q Consensus       366 ~L~~ll~~~~~~~~~~~~~~l~~l~~  391 (449)
                      -|++.+.+.|+.+++...-=+..+.+
T Consensus       408 elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  408 ELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            66777777887777654433334443

>TIGR02270 conserved hypothetical protein

Probab=98.45  E-value=0.00011  Score=67.77  Aligned_cols=244  Identities=17%  Similarity=0.050  Sum_probs=164.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      ..++.++..+......++...++.++....  .+         ..+..|+..|.+.++.++..+..+|+.+-        
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------  114 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--------  114 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence            457778888854333677666665553221  11         13789999999888989999999998651        


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                         .......|+..+ ++.++.++..++.++....           ....+.+..++++.++.++..++.+++.+-..  
T Consensus       115 ---~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       115 ---GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             ---chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence               122455677777 7778888888887766622           12356788888889999999999999887632  


Q ss_pred             hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940          225 DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI  304 (449)
Q Consensus       225 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  304 (449)
                               ..++.|...+.+.++.|+..|+..++.+-.  +.         .+..+....... .......+...+...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     345667777889999999999999876633  21         234455534433 333444444444333


Q ss_pred             hcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 039940          305 TAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK  384 (449)
Q Consensus       305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~  384 (449)
                        +.+         ..++.|..++.++  .++..++++++.+-..   .         .++.|+..+.+.  .+...|-+
T Consensus       237 --~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p---~---------av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGDV---E---------AAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc---c---------hHHHHHHHhcCc--HHHHHHHH
Confidence              333         3567777788764  4999999999987543   2         566777776533  48889999


Q ss_pred             HHHHHHHh
Q 039940          385 GLENILKV  392 (449)
Q Consensus       385 ~l~~l~~~  392 (449)
                      ++..++-.
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99988853

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.44  E-value=5.2e-05  Score=68.99  Aligned_cols=338  Identities=14%  Similarity=0.097  Sum_probs=203.1

Q ss_pred             HHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--CCh
Q 039940           45 QFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--PSD  122 (449)
Q Consensus        45 ~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~  122 (449)
                      .|..+.+.. ..-...+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|..  .+.
T Consensus         6 ~Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~   82 (371)
T PF14664_consen    6 DLVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKND   82 (371)
T ss_pred             HHHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence            344444432 222333333444556665566666 7999999999999998 67888888888866667777765  346


Q ss_pred             HHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc
Q 039940          123 DVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH  202 (449)
Q Consensus       123 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~  202 (449)
                      .-|++|+..+..+........  ....+.+..++... .+.+...+..++.++..++-.+|  ......|++..+...+.
T Consensus        83 ~ER~QALkliR~~l~~~~~~~--~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~  157 (371)
T PF14664_consen   83 VEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALI  157 (371)
T ss_pred             HHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHH
Confidence            678899999999876532211  12556788888888 66788899999999999998753  44445688899998887


Q ss_pred             CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-------CC--cchhhHHHHHHHhhcCChhhHHHHH
Q 039940          203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-------SP--SVLIPALRTVGNIVTGDDFQTQCVI  273 (449)
Q Consensus       203 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~--~v~~~a~~~l~~l~~~~~~~~~~~~  273 (449)
                      .+..++...++.++..+...+..+ +.+...--++.++.-..+.       +.  +....+..++..+...=+.....-.
T Consensus       158 d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~  236 (371)
T PF14664_consen  158 DGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM  236 (371)
T ss_pred             hccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence            766668888999999988766543 2222211233333333222       12  1233344445444433222111111


Q ss_pred             h-cCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHH------HHHCCChHHHHHHh---hcCchhHHHHHHHH
Q 039940          274 N-HGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQA------VIDAGLIVPLVNLL---QDAEFDIKKEAAWA  342 (449)
Q Consensus       274 ~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~------l~~~~~~~~L~~ll---~~~~~~v~~~a~~a  342 (449)
                      + ..++..|+..|..+ .+++|+.....+..+.. ..+.....      ....|-+..--++-   .......... ..-
T Consensus       237 ~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~-~~~  314 (371)
T PF14664_consen  237 NDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHR-SSK  314 (371)
T ss_pred             CCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcc-ccc
Confidence            1 25788899999998 88899999988888875 22211111      11111110000100   0000000000 000


Q ss_pred             HHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhh
Q 039940          343 ISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       343 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~  393 (449)
                      =.+++.+.-.-....|++.|.++.|+++..+. |+.+..+|.-.|..++...
T Consensus       315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  315 RPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             cccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            01122111112245577899999999999987 8888888888888887654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=7.4e-05  Score=64.02  Aligned_cols=216  Identities=15%  Similarity=0.182  Sum_probs=162.0

Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh----hHHHHHHHhCcHHHHHHhhCCC
Q 039940          171 GTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN----DKIQAVIEAGVCGPLVELLGHP  246 (449)
Q Consensus       171 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~~~~~~~~L~~ll~~~  246 (449)
                      +..+|-.+.....  ......+..|.+..-|..++..++.-++..+..+..+.+    ..+..+++.++++.++..+...
T Consensus        63 cVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge  140 (524)
T KOG4413|consen   63 CVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE  140 (524)
T ss_pred             HHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence            5555666655431  112234667777777888899999999988888876655    2344566889999999999999


Q ss_pred             CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH--hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHH
Q 039940          247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL--LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPL  324 (449)
Q Consensus       247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l--l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L  324 (449)
                      +.++...|...+..++.. +.....++++...+.+...  .... +.-+|......+..+.+-+++...+....|.+..|
T Consensus       141 ddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL  218 (524)
T KOG4413|consen  141 DDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL  218 (524)
T ss_pred             cHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence            999999999999999886 5555667777776655333  3333 55678888888888888889988888899999999


Q ss_pred             HHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 039940          325 VNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       325 ~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~  392 (449)
                      ..-++. +|.-|+.+++.....++..  ...++++-+.|+++.+++.+..  .+|.-...++-...+++..
T Consensus       219 eaElkGteDtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk  287 (524)
T KOG4413|consen  219 EAELKGTEDTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK  287 (524)
T ss_pred             HHHhcCCcceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc
Confidence            998887 5888999999999998873  3456777789999999999875  4555555566666666543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.41  E-value=0.00027  Score=64.62  Aligned_cols=251  Identities=27%  Similarity=0.316  Sum_probs=173.7

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ..++.+.+.+.+++..++..|+..+..+..            ...++.+..++.+.+ +.++..|+.+|+.+-.  +   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDED-PRVRDAAADALGELGD--P---  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence            578899999999999999999988665532            235889999999999 8999999998888775  2   


Q ss_pred             HHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc-----------cHHHHH
Q 039940          102 KVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA-----------RLSMLR  169 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~~~~~  169 (449)
                            ..++.++.++. +++..+|..+.++|+.+-..           ..+.+++..+.+..           ...++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  34788999888 58999999999999988321           12556777773322           013455


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc
Q 039940          170 IGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS  249 (449)
Q Consensus       170 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~  249 (449)
                      .+...+..+-..          ...+.+...+...+..++..+..++..+....         ..+.+.+...+.+++..
T Consensus       168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            555555544333          45677778888888888888888888776554         23456777788888888


Q ss_pred             chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940          250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~  329 (449)
                      ++..++..++.+-..           ...+.+...+... +..++..+...+...  ...         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence            888888888766432           2455677777777 666666655555411  111         12344555556


Q ss_pred             cCchhHHHHHHHHHHHhhcc
Q 039940          330 DAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       330 ~~~~~v~~~a~~aL~~l~~~  349 (449)
                      +.+..++..+..++......
T Consensus       286 ~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         286 DEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             cchhhHHHHHHHHHHhhccc
Confidence            66677777777777766553

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.39  E-value=1.4e-05  Score=58.99  Aligned_cols=125  Identities=17%  Similarity=0.173  Sum_probs=104.2

Q ss_pred             hhhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           20 KLEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        20 ~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      ..+-+..++.-.+ ..+.+.+...+..|.+++-+  ..+...+.+.++++.+++.|..++ +.+.+.++..|+|+|. ++
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d~   89 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-DK   89 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-Ch
Confidence            3444555655555 35677777777788898755  577888999999999999999999 8999999999999998 68


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH  148 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  148 (449)
                      .+...+.+.+++|.++..++++.+.....++.++..++...-..++.+..
T Consensus        90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen   90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            89999999999999999999999999999999999998766666666644

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.38  E-value=8.1e-05  Score=63.49  Aligned_cols=239  Identities=15%  Similarity=0.140  Sum_probs=150.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940          196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCVI  273 (449)
Q Consensus       196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~  273 (449)
                      .+-++++.-++-.+--+++|+.++......+.....+...-..++.++++  +..+++...+.+++.++.. +...+.+-
T Consensus       153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~  231 (432)
T COG5231         153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDID  231 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHH
Confidence            34444444456667778889988886655443334444555677777766  4567888999999988765 44443222


Q ss_pred             h-cCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHH-HCCChHHHHHHhhcC--chhHHHHHHHHHHHhhc
Q 039940          274 N-HGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR-KQIQAVI-DAGLIVPLVNLLQDA--EFDIKKEAAWAISNATK  348 (449)
Q Consensus       274 ~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~-~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~  348 (449)
                      + ...+..++.+.+.....+|-+-++..+.|++...| ..+..+. ..++.+..-.++..+  |.+++...-..=..+..
T Consensus       232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~  311 (432)
T COG5231         232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ  311 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence            1 23566677777655356788888999999987332 3333333 334555554444443  44444322221111111


Q ss_pred             c---------------------CC--------HHHHHHHHHc--CChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhh
Q 039940          349 A---------------------GT--------QEQIKYLVRE--GCIKPLCDLLLCADPE-IVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       349 ~---------------------~~--------~~~~~~l~~~--~~~~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~  396 (449)
                      .                     ..        ..+...+.+.  ..+..|..+++..++. ....|+.-+..+.+..+. 
T Consensus       312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-  390 (432)
T COG5231         312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-  390 (432)
T ss_pred             hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence            1                     00        1223444443  3577888888887666 455666667777766554 


Q ss_pred             hccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          397 KNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                                  ....+...|+.+.+..|.+|++++++-.|.+..+.+..++
T Consensus       391 ------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~~  430 (432)
T COG5231         391 ------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISSE  430 (432)
T ss_pred             ------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhhh
Confidence                        3678899999999999999999999999999999887654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=8.9e-05  Score=75.76  Aligned_cols=376  Identities=12%  Similarity=0.094  Sum_probs=212.1

Q ss_pred             HHHHHHhcCCCHHHHHHHH-HHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CChhhhH
Q 039940           25 PAMVAGVWSDDNSMQLEAA-TQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS-GTSVNTK  102 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~  102 (449)
                      ..+...+.|.++..|..++ |.|.-. ..-+..+-.......+...+.++|.+.+ +-+|..|.+.++-+-. ++...++
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~v-q~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~  898 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLV-QYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK  898 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHH-HHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence            4555666788998887664 554433 3222222222333455688889999888 7888888887775554 2333333


Q ss_pred             HHHhCCChHHHHHhhCCCC---------hHHH-------------HHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc
Q 039940          103 VLIDHGAVPIFVKLLASPS---------DDVR-------------EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN  160 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~---------~~~~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~  160 (449)
                           +.+..|+.-|..+.         .++.             -....-|.|++.+-.. .+      .+-.++++-+
T Consensus       899 -----~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-Pd------LVYKFM~LAn  966 (1702)
T KOG0915|consen  899 -----SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PD------LVYKFMQLAN  966 (1702)
T ss_pred             -----HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hH------HHHHHHHHhh
Confidence                 33455555443211         1111             1112223333322100 01      1123333333


Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940          161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV  240 (449)
Q Consensus       161 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~  240 (449)
                      ++..-.-+.-|+.-+..++..............+|.|.+.=-+++..++......-..+...+....+...+ .+++-|+
T Consensus       967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen  967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred             hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence            333334444555556666655433333444667777777777888999888777777777665555554444 6788888


Q ss_pred             HhhCCCCCcchhhHHHHHHHhhcCChhh--HHHHHhcCCHHHHHHHhccCCchhHHHH---HHHHHHHHhcC-----CHH
Q 039940          241 ELLGHPSPSVLIPALRTVGNIVTGDDFQ--TQCVINHGAVPYLLALLINNHKKSIKKE---SCWTVSNITAG-----NRK  310 (449)
Q Consensus       241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~v~~~---a~~~l~nl~~~-----~~~  310 (449)
                      .-+.+..+.+|+.+|-++..+..+.+..  .+.+  ..++..+...+.+- ...||+.   ++.+++.++..     +..
T Consensus      1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred             HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence            8889999999999999999999885432  2222  23555666666655 5566665   45666666641     111


Q ss_pred             HHHHHHHCCChHHHHHH-hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHH-HHHHHHHHH
Q 039940          311 QIQAVIDAGLIVPLVNL-LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV-TVCLKGLEN  388 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~-~~~~~~l~~  388 (449)
                      ..+..+. .++|.|++- +.+.-+++|..++.++..++.+........+-  .+++.|++....-.+.+. ..++.+...
T Consensus      1123 ~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1123 KGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred             cHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhhhhh
Confidence            1122222 245554431 11446799999999999999985543333222  367778887777666554 345544221


Q ss_pred             HHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHH
Q 039940          389 ILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGI  433 (449)
Q Consensus       389 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i  433 (449)
                      =.+..+...            ....+....++.++.+.++-+..+
T Consensus      1200 e~ealDt~R------------~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1200 ETEALDTLR------------ASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred             HHHHHHHHH------------HhhhcCCcHHHHHHHHHHhhhHHH
Confidence            122222221            344455556777777766665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.38  E-value=2.5e-05  Score=77.81  Aligned_cols=270  Identities=14%  Similarity=0.137  Sum_probs=177.3

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC---CChh
Q 039940           24 LPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS---GTSV   99 (449)
Q Consensus        24 i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~   99 (449)
                      ++.+...++. ...+.+..|+..|..++....    .+..-..++|.++.++.++. .++|..|+..|+.+..   +-+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            5666666664 457778888888888864431    22333567999999999999 8999999999988765   1222


Q ss_pred             hhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcC------------------CCchhhhH-----hhc----CC
Q 039940          100 NTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAH------------------SPGCRNLV-----LHE----EA  151 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~------------------~~~~~~~~-----~~~----~~  151 (449)
                      .-..+...-++|.|-.++.+ ....+|..-+..|+.++..                  .++.....     .+.    ..
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            22334444567888888877 4455555555555555421                  11110000     000    01


Q ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940          152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI  231 (449)
Q Consensus       152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  231 (449)
                      +...+.-|..++++.|++..+..+.-||....  +.....-+++.|+.+|+..|+.+|..-...|..++..-..+   -+
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~  653 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV  653 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence            22222222255667788887777777776531  11122457889999999999999988888877665332111   13


Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      +..++|.|..-|.++++.|...|+.++..|+...--.+..+  ..+++....+|-++ +.-+|..++..+..++.
T Consensus       654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            44678999999999999999999999999987532222222  23677778888899 99999999999988875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.36  E-value=0.00079  Score=63.22  Aligned_cols=350  Identities=15%  Similarity=0.123  Sum_probs=200.7

Q ss_pred             HHHHHHHhcCCCH---HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           24 LPAMVAGVWSDDN---SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        24 i~~l~~~l~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      +|.++..|.+++.   ......+.+|..++..  .+-.+.+. ..++..+-..++.....+....++.++.++.....+.
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            3677788876554   5556778888888653  23233332 2556666666654444677777888888776533222


Q ss_pred             -----hHHHHhCCChHHHHHhhCC-----C--ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc--------
Q 039940          101 -----TKVLIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN--------  160 (449)
Q Consensus       101 -----~~~~~~~~~i~~L~~~l~~-----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------  160 (449)
                           .....+..+++.+.+....     .  ++.+...+..++..+.+.-+..+..-    .+..+...+.        
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~  153 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPF  153 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCC
Confidence                 2333344477877776632     1  24555555566665554443322221    1333333332        


Q ss_pred             ---ccccHHHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCC--hhHHHHHHHh
Q 039940          161 ---EHARLSMLRIGTWTLSN-LCKGKPQPPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGT--NDKIQAVIEA  233 (449)
Q Consensus       161 ---~~~~~~~~~~a~~~l~~-l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~  233 (449)
                         .+............+.. ++.-++..........+..++.+..+ +++..+..++.+++.+...-  ++..+     
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----  228 (415)
T PF12460_consen  154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----  228 (415)
T ss_pred             CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----
Confidence               01001112222222222 22222333333444577777776554 46888888888888887542  22122     


Q ss_pred             CcHHHHHHhh-CCCCCcchhhHHHHHHHh----hcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940          234 GVCGPLVELL-GHPSPSVLIPALRTVGNI----VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN  308 (449)
Q Consensus       234 ~~~~~L~~ll-~~~~~~v~~~a~~~l~~l----~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  308 (449)
                      ++++.+.... .......+..++..+..+    ...++....     ..++.|+.++.+   +++...|+.++.-+....
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~  300 (415)
T PF12460_consen  229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDS  300 (415)
T ss_pred             HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence            2344444434 333344444444444333    222222221     356678888875   567888889888887753


Q ss_pred             HH--------HHHHHHHC----CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940          309 RK--------QIQAVIDA----GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP  376 (449)
Q Consensus       309 ~~--------~~~~l~~~----~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~  376 (449)
                      +.        .++.+.++    .++|.|++-.+..+...+.....||+++..+........=. ..+++.|++.++.+|+
T Consensus       301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~  379 (415)
T PF12460_consen  301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDA  379 (415)
T ss_pred             HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCH
Confidence            32        23334433    35677777777777779999999999999986544322211 3478999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 039940          377 EIVTVCLKGLENILKVGE  394 (449)
Q Consensus       377 ~~~~~~~~~l~~l~~~~~  394 (449)
                      +++..++.+|..++...+
T Consensus       380 ~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  380 DVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHHHHHHHHHHHHcCH
Confidence            999999999999997664

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.33  E-value=6.9e-05  Score=63.90  Aligned_cols=230  Identities=14%  Similarity=0.170  Sum_probs=152.3

Q ss_pred             hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC-CChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCCchhhhHhh-
Q 039940           73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH-GAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSPGCRNLVLH-  148 (449)
Q Consensus        73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-  148 (449)
                      +++.-+ +-.+.-|++++.++.. .++.|..+-.. ..-..++..+++  +...++.+.+.+++.++... .+.+.+-. 
T Consensus       157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~  233 (432)
T COG5231         157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKM  233 (432)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence            444444 5677889999999998 57777665443 345667777765  56889999999999986543 44433322 


Q ss_pred             cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh--hhhhc-hHHHHHHhhcC--CCHHHHHHHHHHHHHcccC-
Q 039940          149 EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF--DQVRP-VLPALAQLIHL--DDEEVLRNVCWTLSNLSDG-  222 (449)
Q Consensus       149 ~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~-~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~-  222 (449)
                      ...+.-++........+.+.+-++.++.|++...|....  ....+ +.+..-.++..  .|.+++...-..=..+..+ 
T Consensus       234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~  313 (432)
T COG5231         234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT  313 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence            234556677776667788999999999999985433221  11222 33433333332  3455443322211111111 


Q ss_pred             --------------------Ch---------hHHHHHHH--hCcHHHHHHhhCCCCCc-chhhHHHHHHHhhcCChhhHH
Q 039940          223 --------------------TN---------DKIQAVIE--AGVCGPLVELLGHPSPS-VLIPALRTVGNIVTGDDFQTQ  270 (449)
Q Consensus       223 --------------------~~---------~~~~~~~~--~~~~~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~  270 (449)
                                          ++         .+.+.+.+  ..++..|..+++..++. ...-||.-++.+.+..++...
T Consensus       314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~  393 (432)
T COG5231         314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA  393 (432)
T ss_pred             hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence                                10         11222222  25678888999988777 566689999999999999998


Q ss_pred             HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      .+.+.|+-+.++.++.++ |++|+-+|..++..+..
T Consensus       394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            888999999999999999 99999999999877653

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.32  E-value=7.5e-05  Score=68.78  Aligned_cols=290  Identities=13%  Similarity=0.100  Sum_probs=172.1

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ...|.|-.++++....+++++++..+.++..+  - ....++ ..+..|-.+|+++. ...+..|+++|..++...|+..
T Consensus       264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v-~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--V-GSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--c-CHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCcee
Confidence            33445555566667889999999998886543  1 112222 23566777788888 7889999999999988555422


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                         .-+  =+-+-.+..+.+..+...|+..|..-  +..+..+.+     +..+..++ ++-+...+..+..++..||-.
T Consensus       339 ---~vc--N~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~  405 (898)
T COG5240         339 ---SVC--NKEVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLL  405 (898)
T ss_pred             ---eec--ChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhh
Confidence               111  14455566677777766666555442  222222222     22333333 333444555666677777776


Q ss_pred             CCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC-CcchhhHHHHHH
Q 039940          182 KPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS-PSVLIPALRTVG  259 (449)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~l~  259 (449)
                      .|......    +..|...|. .+.-+.+..+..++..+....|+..+     ..++.|...+.+.. +++.   +++|+
T Consensus       406 Fp~k~~s~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~---vrIL~  473 (898)
T COG5240         406 FPSKKLSY----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQIT---VRILG  473 (898)
T ss_pred             CcHHHHHH----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHH---HHHHH
Confidence            65544433    444444443 45678888899999888877765544     34566676666543 3344   44444


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA  339 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  339 (449)
                      -+....+....   ....+..+..-+--. +..+|..|..+|+.++-...+   ......+...|-+.+++.|.++|..|
T Consensus       474 iLG~EgP~a~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrA  546 (898)
T COG5240         474 ILGREGPRAKT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRA  546 (898)
T ss_pred             HhcccCCCCCC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHH
Confidence            44333221110   011233333333233 667999999999988753221   11222355678888999999999999


Q ss_pred             HHHHHHhhc
Q 039940          340 AWAISNATK  348 (449)
Q Consensus       340 ~~aL~~l~~  348 (449)
                      ..++.++-.
T Consensus       547 sf~l~~~~~  555 (898)
T COG5240         547 SFLLRNMRL  555 (898)
T ss_pred             HHHHHhhhh
Confidence            999999864

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.31  E-value=1.5e-06  Score=51.48  Aligned_cols=41  Identities=41%  Similarity=0.848  Sum_probs=38.3

Q ss_pred             ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA  137 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  137 (449)
                      +++++..+++.|++|.|+++|.++++++++.|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=5.8e-06  Score=77.00  Aligned_cols=260  Identities=17%  Similarity=0.101  Sum_probs=166.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH---HHhcC--CChh
Q 039940           25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVL---TNIAS--GTSV   99 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L---~~l~~--~~~~   99 (449)
                      ..+.....+.|..++..|+..|..+..+.  .--+.     .....++.+.+.+ .+++..|++.+   +|.+-  ...+
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccch
Confidence            33777788899999999999998886542  21221     2566788899888 89999886555   45441  1112


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc----ccccHHHHHHHHHHH
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN----EHARLSMLRIGTWTL  175 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~~~~~~a~~~l  175 (449)
                      .-+.-....++..++..+.+.+..+|..|..+|+.+-..+.++-...++.    .++.-+.    .+..+.....    =
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr~ahkrpk~l~s----~  344 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYS----S  344 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhhhcccchHHHHh----c
Confidence            22222233568899999999999999999999998855443332222221    2222111    0111111000    0


Q ss_pred             HHhhcCC------C------CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940          176 SNLCKGK------P------QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL  243 (449)
Q Consensus       176 ~~l~~~~------~------~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll  243 (449)
                      ...+++.      |      ........|+-..+++-+.++-.+++.++...++.|+...+....     ..++.|++++
T Consensus       345 GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMf  419 (823)
T KOG2259|consen  345 GEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMF  419 (823)
T ss_pred             CCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHh
Confidence            0011111      1      011122256667788888777899999999999999988776443     4578999999


Q ss_pred             CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 039940          244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI  312 (449)
Q Consensus       244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~  312 (449)
                      .+....+|..|..+|..++.+      ..++...++.+...|.+. +.++|...-..|.+.-..+.+.+
T Consensus       420 NDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i  481 (823)
T KOG2259|consen  420 NDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECI  481 (823)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHH
Confidence            999999999999999988765      123345677788888888 88888877777666533444433

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.00089  Score=68.84  Aligned_cols=289  Identities=17%  Similarity=0.183  Sum_probs=165.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch--
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC--  142 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~--  142 (449)
                      .++|.|.+.=-+++ ..+|..-..+...+..++....+...+ .++.-|+.-|.+...++|+.++-+|..+..+.|.-  
T Consensus       998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred             HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence            45788888777888 788887777777777755555554443 56778888888889999999999999999876542  


Q ss_pred             hhhHhhcCCHHHHHHHHcccccHHHHHH---HHHHHHHhhcCC-----CCCChhhhhchHHHHHHh-hcCCCHHHHHHHH
Q 039940          143 RNLVLHEEALIPLLAQLNEHARLSMLRI---GTWTLSNLCKGK-----PQPPFDQVRPVLPALAQL-IHLDDEEVLRNVC  213 (449)
Q Consensus       143 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~l~~l~~~~-----~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~~~  213 (449)
                      .+.+.  .....++..+ ++-.+.+++.   ++.+++.+|-..     +.........++|.+..- +-+.-++++.-++
T Consensus      1076 ~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred             HHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            11121  2333344444 4444556554   455666666443     111222334445554421 1145689999999


Q ss_pred             HHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh-HHHH----------HHHhhcCChhhHHH---HH------
Q 039940          214 WTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP-ALRT----------VGNIVTGDDFQTQC---VI------  273 (449)
Q Consensus       214 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~-a~~~----------l~~l~~~~~~~~~~---~~------  273 (449)
                      .++..++...+....... ..+++.|+.....-++.+... +++.          +..=+..+....+.   .+      
T Consensus      1153 ~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred             HHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence            999999987765433222 256666666666554443322 2222          11111111111000   00      


Q ss_pred             -hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCH
Q 039940          274 -NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQ  352 (449)
Q Consensus       274 -~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  352 (449)
                       =...+|.+.++++.+-.-..|..++..+.-++..-....... ....+..++..+++.++.+++..+.|.+.++....+
T Consensus      1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred             HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence             013455556666554334455555555555543110000000 012345556666777899999999999999998777


Q ss_pred             HHHHHHHH
Q 039940          353 EQIKYLVR  360 (449)
Q Consensus       353 ~~~~~l~~  360 (449)
                      ++.+.+++
T Consensus      1311 dq~qKLie 1318 (1702)
T KOG0915|consen 1311 DQMQKLIE 1318 (1702)
T ss_pred             HHHHHHHH
Confidence            77777554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.29  E-value=2.1e-06  Score=50.79  Aligned_cols=41  Identities=24%  Similarity=0.570  Sum_probs=37.4

Q ss_pred             ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      +++.++.+++.|+++.|+.+|++. ++.++++|+|+|+|+++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            356788899999999999999998 99999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=98.26  E-value=0.00017  Score=69.39  Aligned_cols=238  Identities=15%  Similarity=0.137  Sum_probs=163.1

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch---hhhHhhcCCHHHHHHHHccc------ccHHHHHHHHHHHHHhh
Q 039940          109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC---RNLVLHEEALIPLLAQLNEH------ARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~------~~~~~~~~a~~~l~~l~  179 (449)
                      .+...+.+|+..+++-|-.++-.+.+++...+..   ++.+.+.=+.+.+-.+|...      +....+.-++.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3667788888888888888888899998766532   33455555565566666331      33567778899999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCH-HHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIHLDDE-EVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ..+.........+-+|.++..+.+.+. ++...++.+|..++.. ++..+.+++.|.++.|...+.+ .+.....|+.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            976555555567889999999987766 9999999999999954 4456779999999999999887 666788899999


Q ss_pred             HHhhcCChhhHHH---HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH-HHH----HHHCCChHHHHHHhhc
Q 039940          259 GNIVTGDDFQTQC---VINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQ-IQA----VIDAGLIVPLVNLLQD  330 (449)
Q Consensus       259 ~~l~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~----l~~~~~~~~L~~ll~~  330 (449)
                      .+++.........   -.-..+++.+-..+... ....+-+++..|+.+....+.. ...    -+-..+...+..++.+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            8887653311100   00123556666666666 6667888899999998755211 111    1122345556666666


Q ss_pred             C-chhHHHHHHHHHHHhhcc
Q 039940          331 A-EFDIKKEAAWAISNATKA  349 (449)
Q Consensus       331 ~-~~~v~~~a~~aL~~l~~~  349 (449)
                      . .+.-|..+....+.+...
T Consensus       243 r~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            5 566666666666666554

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.26  E-value=0.00045  Score=65.01  Aligned_cols=257  Identities=14%  Similarity=0.106  Sum_probs=168.2

Q ss_pred             CCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCC-----
Q 039940           55 SLPIDEVIQAGIVPRFVEFL---------LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP-----  120 (449)
Q Consensus        55 ~~~~~~~~~~~~i~~L~~ll---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-----  120 (449)
                      ......+....++..|.++-         ....+.++...|++||+|+...++..++.+.+.|+.+.++..++..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            34455555555566666654         2333479999999999999999999999999999999999999875     


Q ss_pred             ChHHHHHHHHHHHHHhcCCCchhhhHhh-cCCHHHHHHHHcc---------c-------ccHHHHHHHHHHHHHhhcCCC
Q 039940          121 SDDVREQAVWALGNIVAHSPGCRNLVLH-EEALIPLLAQLNE---------H-------ARLSMLRIGTWTLSNLCKGKP  183 (449)
Q Consensus       121 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~---------~-------~~~~~~~~a~~~l~~l~~~~~  183 (449)
                      +.++.-..+++|.-++...+..+..+.+ .+++..+...+..         .       .+.+....++..+.|++...+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            6788888888888888777776655544 4666666665521         0       144567778889999988775


Q ss_pred             CCCh----hhhhchHHHHHHhh---cC--CCHHHHHHHHHHHHHcccCChhH-------HH----HHHHhCcHHHHHHhh
Q 039940          184 QPPF----DQVRPVLPALAQLI---HL--DDEEVLRNVCWTLSNLSDGTNDK-------IQ----AVIEAGVCGPLVELL  243 (449)
Q Consensus       184 ~~~~----~~~~~~l~~l~~ll---~~--~~~~~~~~~~~~l~~l~~~~~~~-------~~----~~~~~~~~~~L~~ll  243 (449)
                      ....    .....++..+..++   .+  +.......++.+|.|+--.....       ..    .......+..++.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            4433    22344555555552   11  23566778888888773211110       00    001123455555555


Q ss_pred             CC-----C---CCcchhhHHHHHHHhhcCChhhHHHHH----------------hcCCHHHHHHHhccCCchhHHHHHHH
Q 039940          244 GH-----P---SPSVLIPALRTVGNIVTGDDFQTQCVI----------------NHGAVPYLLALLINNHKKSIKKESCW  299 (449)
Q Consensus       244 ~~-----~---~~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~l~~L~~ll~~~~~~~v~~~a~~  299 (449)
                      ..     .   -.+.....+.+|.+++..+...++.+.                ...+-..|+.++.+. .+.++..++.
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            42     1   124566678888888877654444332                124566799999999 6999999999


Q ss_pred             HHHHHhcCCHHHH
Q 039940          300 TVSNITAGNRKQI  312 (449)
Q Consensus       300 ~l~nl~~~~~~~~  312 (449)
                      .+..+|..+....
T Consensus       331 llf~Lc~~d~~~~  343 (446)
T PF10165_consen  331 LLFVLCKEDASRF  343 (446)
T ss_pred             HHHHHHhhhHHHH
Confidence            9999987655433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.00043  Score=66.02  Aligned_cols=243  Identities=16%  Similarity=0.131  Sum_probs=152.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHH
Q 039940           74 LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALI  153 (449)
Q Consensus        74 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  153 (449)
                      |++|+ +-++-..++.|+.+=.  ++-..     ..+|.+...|.+...-+|.+|..++..+-....   ..+  ..+-.
T Consensus       108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDape  174 (948)
T KOG1058|consen  108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPE  174 (948)
T ss_pred             ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHH
Confidence            34555 5566666666655543  33222     467888899999999999999988887743311   111  12222


Q ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940          154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH---LDDEEVLRNVCWTLSNLSDGTNDKIQAV  230 (449)
Q Consensus       154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~  230 (449)
                      .+-..+....|+..+++|...|...-.          +.++.++...+.   +-++.++...+..+...+..++....  
T Consensus       175 Li~~fL~~e~DpsCkRNAFi~L~~~D~----------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~--  242 (948)
T KOG1058|consen  175 LIESFLLTEQDPSCKRNAFLMLFTTDP----------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA--  242 (948)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHhcCH----------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh--
Confidence            334455567788888888766554322          244555544443   23566777777777777766554322  


Q ss_pred             HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940          231 IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       231 ~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  310 (449)
                         ..+..+..+|.+.++.++-+|...+..++.. +.....     ....++.++.+..|..++--...-|..+......
T Consensus       243 ---~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~  313 (948)
T KOG1058|consen  243 ---RYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK  313 (948)
T ss_pred             ---HHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH
Confidence               5678889999999999999998888877764 322221     2345555655443556666555556666433322


Q ss_pred             HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH
Q 039940          311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI  355 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  355 (449)
                      .    . .|.+-.++++|+.++.+++..+......++.+.+-+..
T Consensus       314 i----l-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi  353 (948)
T KOG1058|consen  314 I----L-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI  353 (948)
T ss_pred             H----H-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH
Confidence            1    2 24666778888888999999998888888876554443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.25  E-value=2.2e-05  Score=67.35  Aligned_cols=189  Identities=17%  Similarity=0.118  Sum_probs=122.0

Q ss_pred             cCCCHHHHHHHHHHHHHcccCC--hhHHHHHHHh--CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940          202 HLDDEEVLRNVCWTLSNLSDGT--NDKIQAVIEA--GVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA  277 (449)
Q Consensus       202 ~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  277 (449)
                      .+.|.+.+..++..|..+..++  ......+.+.  .++..+...+.+....+...||.++..++........... ..+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence            4568899999999998887665  2222222221  5667788888888888999999999999876444444333 347


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC--HHHH
Q 039940          278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT--QEQI  355 (449)
Q Consensus       278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~  355 (449)
                      ++.|++.+.++ ...++..|..+|..++...+... .+    .++.+.....+.++.+|..++..+..++....  ....
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~-~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP-KI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH-HH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            88999999988 88899999999999988654111 11    15566677788899999999999999988644  1111


Q ss_pred             H-HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940          356 K-YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       356 ~-~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  397 (449)
                      . ...-..+++.+..++.+.++++|..+-.++..+.+..+...
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence            1 11113368889999999999999999999999988776643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.22  E-value=0.00039  Score=63.59  Aligned_cols=215  Identities=23%  Similarity=0.297  Sum_probs=153.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      ..++.+.+.+.+++ ..++..|.+.++.+...           ..++.+..++.+.++.+|..+..+|+.+-  .     
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~-----  103 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--D-----  103 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--C-----
Confidence            45888999999997 89999999997776641           35899999999999999999999888761  1     


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH------------HHHHHH
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDE------------EVLRNV  212 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~~~~~~  212 (449)
                          ...++.++..+..+.+..++..+.++|..+-..          ..+..++..+.++..            .++..+
T Consensus       104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                225678888885578999999999999987766          336666666666542            234444


Q ss_pred             HHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh
Q 039940          213 CWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS  292 (449)
Q Consensus       213 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  292 (449)
                      ...+..+-.           ...++.+...+.+....++..+..+++.+...+         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            444443321           134577777888888888888888888877653         23456777788887 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH
Q 039940          293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS  344 (449)
Q Consensus       293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~  344 (449)
                      +|..++.+++.+-...           ..+.+...+.+.+..++..+..++.
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence            8888888888773321           3455666666666666665555554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.22  E-value=8.1e-05  Score=74.33  Aligned_cols=295  Identities=18%  Similarity=0.148  Sum_probs=184.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc---CCCchh
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA---HSPGCR  143 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~---~~~~~~  143 (449)
                      ++.+...++.-...+.+..|+..|..++.-..+.   ..-.-++|+++.++.++...+|..|+.+|..+..   +-|..-
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence            5555556665444688899999999988722111   1112468999999999999999999999888763   223332


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHH-----HHHhhcCCCHHHHHHHHHHHHH
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA-----LAQLIHLDDEEVLRNVCWTLSN  218 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-----l~~ll~~~~~~~~~~~~~~l~~  218 (449)
                      ..+...-.+|.|-.++.++....++..-+.+|..|+...        ..++..     ...+++..+.+          .
T Consensus       501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--------~rFle~~q~~~~~g~~n~~nse----------t  562 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--------YRFLELTQELRQAGMLNDPNSE----------T  562 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--------HHHHHHHHHHHhcccccCcccc----------c
Confidence            333334455555555533344556666666677666542        011111     11112222222          0


Q ss_pred             ccc-CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHH
Q 039940          219 LSD-GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKES  297 (449)
Q Consensus       219 l~~-~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  297 (449)
                      ... ......+.+.+ ++-+....++.++++-|+..-+..|.-||......   --+.-+++.|+..|.+. |..+|..-
T Consensus       563 ~~~~~~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aF  637 (1431)
T KOG1240|consen  563 APEQNYNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAF  637 (1431)
T ss_pred             ccccccchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHH
Confidence            111 11111222222 45566777888888888888888888887542211   11234788999999999 99888776


Q ss_pred             HHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC
Q 039940          298 CWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD  375 (449)
Q Consensus       298 ~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~  375 (449)
                      ...+.-++.  +-.     -++.+++|.|..-+.+..+.|...|+.+|..|+..+-   .+...-.+.++-..-++-.++
T Consensus       638 fdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hPN  709 (1431)
T KOG1240|consen  638 FDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHPN  709 (1431)
T ss_pred             HhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCch
Confidence            666665543  211     1234688999999999999999999999999998642   111111224555556677899


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 039940          376 PEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       376 ~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .-+|..++..+..+.+.-..
T Consensus       710 ~WIR~~~~~iI~~~~~~ls~  729 (1431)
T KOG1240|consen  710 LWIRRAVLGIIAAIARQLSA  729 (1431)
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            99999999998887765544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.0024  Score=63.06  Aligned_cols=342  Identities=18%  Similarity=0.142  Sum_probs=201.6

Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc------CC-CCHHHHHHHHHHHHHhcC---CChhhhHHHHhCCCh
Q 039940           41 EAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL------RE-DYPRLQFEAAWVLTNIAS---GTSVNTKVLIDHGAV  110 (449)
Q Consensus        41 ~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~~-~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i  110 (449)
                      .|...+..++++.+.+..     .|+++.+++.+.      .+ +++.-+.-|++++++++.   ..+..+ -.++.=++
T Consensus       391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv  464 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHH
Confidence            455566666655423322     355777777776      22 235667778888888875   111111 12222235


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC---Ch
Q 039940          111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP---PF  187 (449)
Q Consensus       111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~---~~  187 (449)
                      +.+...++++.-.+|..|+|+++.++..+-  ++...-..++....+.+.++.+-.|+..|+.+|..+..+.+..   ..
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            666667788889999999999999985432  2222223456667777766788889999999999999887433   23


Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHH-HcccCChhHHHHHHHhCcHHHHHHhhCC---CCCc---chhhHHHHHHH
Q 039940          188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLS-NLSDGTNDKIQAVIEAGVCGPLVELLGH---PSPS---VLIPALRTVGN  260 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~---v~~~a~~~l~~  260 (449)
                      ..+.+.++.++++.+.-+.+....++..+. ..+..-......+.+ .+...+.+++.+   .++.   -...|.++|.-
T Consensus       543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            334666677777776655555555544332 222221111121222 455666677764   2222   23334444443


Q ss_pred             hhc------CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940          261 IVT------GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD  334 (449)
Q Consensus       261 l~~------~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  334 (449)
                      +.+      ..++..+ -++..+++.+-.++++. -.++-.+++..+.+++...++.-..+++  +++.+.+.+.....+
T Consensus       622 i~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~d  697 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLK-QLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGID  697 (1010)
T ss_pred             HHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHH
Confidence            321      1121211 22445666777777777 6778888888888887654443333343  788888888888888


Q ss_pred             HHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhhh
Q 039940          335 IKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .-...+-+|.|.+..|.+...+.-. ..-....+..++.++  ...=...|++++..++-.+..
T Consensus       698 yf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg  761 (1010)
T KOG1991|consen  698 YFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG  761 (1010)
T ss_pred             HHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence            8888999999999887654332110 111233444455553  223356677888877766554

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.001  Score=59.54  Aligned_cols=224  Identities=16%  Similarity=0.101  Sum_probs=163.7

Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC---------hhHHHHHHHhCcHHHHHHhhCCCCCcch------h
Q 039940          188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT---------NDKIQAVIEAGVCGPLVELLGHPSPSVL------I  252 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~~~~~~L~~ll~~~~~~v~------~  252 (449)
                      ...-++++.++.+|.++|.++...++..+..+...+         ...+..+++.++++.|+..+..-+..+.      .
T Consensus       121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~  200 (536)
T KOG2734|consen  121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH  200 (536)
T ss_pred             HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence            334688999999999999999999999998887432         1345677788999999998876544444      4


Q ss_pred             hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-
Q 039940          253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-  330 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-  330 (449)
                      .++..+-|+....+.....+.+.|.+.+|+.-+... .-...+..|.-.++-+...+.+....+-+-+++..+++-+.- 
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y  280 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence            467788888888888888888889999988854332 245567778888888877666666666677888888876632 


Q ss_pred             --C------chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940          331 --A------EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGST  402 (449)
Q Consensus       331 --~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  402 (449)
                        .      ..+..++...+|+.+...  ++.+..|....+++...-+++. ....+..++++|...+...+..      
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm~--~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt------  351 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLMA--PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT------  351 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhcC--hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch------
Confidence              1      346778888999988884  5778888877777665555554 4445677888888777655432      


Q ss_pred             CCcccHHHHHHHhcchHHHHHHH
Q 039940          403 IGDVNQYARLVEGAEGFKKIEDL  425 (449)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~l~~l  425 (449)
                           +++..|.+.+|+..+-.+
T Consensus       352 -----~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  352 -----PNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             -----HHHHHHHHHHhHHHHHHH
Confidence                 357888888887777555

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.0013  Score=58.99  Aligned_cols=228  Identities=14%  Similarity=0.147  Sum_probs=161.8

Q ss_pred             CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-----h----hhhHHHHhCCChHHHHHhhCCCC-----
Q 039940           56 LPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT-----S----VNTKVLIDHGAVPIFVKLLASPS-----  121 (449)
Q Consensus        56 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~~l~~~~-----  121 (449)
                      +-...+++.++++.|+.+|.+.+ .++....+..+..+...+     .    .-.+.+++.++++.|++.+..-+     
T Consensus       116 dLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvke  194 (536)
T KOG2734|consen  116 DLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKE  194 (536)
T ss_pred             HHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchh
Confidence            44457789999999999999999 799999999999998733     1    23466778899999999886422     


Q ss_pred             -hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc-ccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHH
Q 039940          122 -DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH-ARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALA  198 (449)
Q Consensus       122 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~  198 (449)
                       ..-..+++..+-|+....+.+...+.+.|.+..++..+... .-..-..++..+++-+..+.. +......-.++..++
T Consensus       195 ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL  274 (536)
T KOG2734|consen  195 EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLL  274 (536)
T ss_pred             hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHH
Confidence             23445678888999988888888888889898888866332 334456677777777776653 333333334555555


Q ss_pred             Hhhc----CC-----CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh--h
Q 039940          199 QLIH----LD-----DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD--F  267 (449)
Q Consensus       199 ~ll~----~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~--~  267 (449)
                      +-+.    ++     ..+..++...||+.+......+ ..+....+++...-+++. ....+..++.+|-....+.+  .
T Consensus       275 ~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~  352 (536)
T KOG2734|consen  275 RQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTP  352 (536)
T ss_pred             hhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchH
Confidence            5443    21     2566777888888877665544 446666777777767665 45567789999988888765  5


Q ss_pred             hHHHHHhcCCHHHHHHHhc
Q 039940          268 QTQCVINHGAVPYLLALLI  286 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~  286 (449)
                      .+..+++..++..++.+.-
T Consensus       353 ~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  353 NCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHHHhHHHHHHHHh
Confidence            6667777777777776654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0028  Score=60.25  Aligned_cols=302  Identities=13%  Similarity=0.086  Sum_probs=175.0

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940           69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH  148 (449)
Q Consensus        69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  148 (449)
                      .-+.+|.++.+++-+ -.-..+.-+...+.+..+.     ++..+..=|.+.|+....-|+.+++|+-+.  +.+..+. 
T Consensus        78 EaV~LLss~kysEKq-IGYl~is~L~n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-  148 (938)
T KOG1077|consen   78 EAVNLLSSNKYSEKQ-IGYLFISLLLNENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-  148 (938)
T ss_pred             HHHHHhhcCCccHHH-HhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-
Confidence            345666666543322 2222333333333333322     245566666678888888999999998432  2222221 


Q ss_pred             cCCHHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH
Q 039940          149 EEALIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI  227 (449)
Q Consensus       149 ~~~i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  227 (449)
                       .-++   ++|.. +...-++..++.|+..|.+..|+.  ....+-...++++|...+-.+...+...+..++...++..
T Consensus       149 -~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y  222 (938)
T KOG1077|consen  149 -DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY  222 (938)
T ss_pred             -hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence             1233   44433 334567888888999888875432  2334567788999998888888888888888887766543


Q ss_pred             HHHHHhCcHHHHHHhhC-------------CCCCcchhhHHHHHHHhhcCChhh-HHHHHhcCCHHHHHHHhccCC-c--
Q 039940          228 QAVIEAGVCGPLVELLG-------------HPSPSVLIPALRTVGNIVTGDDFQ-TQCVINHGAVPYLLALLINNH-K--  290 (449)
Q Consensus       228 ~~~~~~~~~~~L~~ll~-------------~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~-~--  290 (449)
                      ...+. ..+..|..+..             -+.|-+...+++.|.+.-...+.. +..+.  .+++.++....... .  
T Consensus       223 k~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~  299 (938)
T KOG1077|consen  223 KTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKK  299 (938)
T ss_pred             hhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccc
Confidence            32221 11122222211             145667777888887774332222 21111  13333333333110 1  


Q ss_pred             ---hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHH
Q 039940          291 ---KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPL  367 (449)
Q Consensus       291 ---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L  367 (449)
                         ...+....+-..+++.+-+..-..+.  ..+..|..++.+.++.+|--|+..++.++...  .-...+...  .+.+
T Consensus       300 vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~h--~d~I  373 (938)
T KOG1077|consen  300 VQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKKH--QDTI  373 (938)
T ss_pred             hHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHHH--HHHH
Confidence               12333344445555543221111222  36778899999999999999999999998863  222222222  6778


Q ss_pred             Hhhcc-CCCHHHHHHHHHHHHHHHHhhh
Q 039940          368 CDLLL-CADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       368 ~~ll~-~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      +..|+ .+|..++.++++.|+.++....
T Consensus       374 i~sLkterDvSirrravDLLY~mcD~~N  401 (938)
T KOG1077|consen  374 INSLKTERDVSIRRRAVDLLYAMCDVSN  401 (938)
T ss_pred             HHHhccccchHHHHHHHHHHHHHhchhh
Confidence            88888 6799999999999999997653

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=0.00075  Score=66.48  Aligned_cols=349  Identities=15%  Similarity=0.100  Sum_probs=212.0

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH---------
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW---------   88 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~---------   88 (449)
                      ....+.++.+.++..++...+++.|...+..+...-..+ .  -....+.+.+++..++++ ..++.....         
T Consensus       272 ~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-~--d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~~  347 (759)
T KOG0211|consen  272 IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-D--DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSAV  347 (759)
T ss_pred             HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-h--hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHHh
Confidence            344567777777777777777777777666665433222 1  112233455555555544 233332222         


Q ss_pred             ------------------------------HHHHhcC-CChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 039940           89 ------------------------------VLTNIAS-GTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA  137 (449)
Q Consensus        89 ------------------------------~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  137 (449)
                                                    -...++. .+.+....+....++|.+-.+..+.+..++...+.....+.-
T Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p  427 (759)
T KOG0211|consen  348 GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP  427 (759)
T ss_pred             ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc
Confidence                                          2222221 111112223334456666667777777777766655555432


Q ss_pred             CCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 039940          138 HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTL  216 (449)
Q Consensus       138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l  216 (449)
                      ..+.   .-.-....+.++..+ ++.++.++.+..+.+..+-.... ..........+|.+..+-......++...++.+
T Consensus       428 ~~~k---~~ti~~llp~~~~~l-~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~i  503 (759)
T KOG0211|consen  428 ILPK---ERTISELLPLLIGNL-KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYI  503 (759)
T ss_pred             cCCc---CcCccccChhhhhhc-chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHH
Confidence            2221   111122344555555 77889999999987766554432 223334467788888887767788899999888


Q ss_pred             HHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940          217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE  296 (449)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  296 (449)
                      ..++....   ..+++...-+.+...+.+...+++..|...+..++.....   .-.....++.++.....+ +...|..
T Consensus       504 p~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~-~y~~R~t  576 (759)
T KOG0211|consen  504 PQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS---EWARLEEIPKLLAMDLQD-NYLVRMT  576 (759)
T ss_pred             HHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCc-ccchhhH
Confidence            88775543   2234444555555556666778999998888887754331   111234677777777766 6778888


Q ss_pred             HHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC
Q 039940          297 SCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA  374 (449)
Q Consensus       297 a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~  374 (449)
                      .+.++.-++.  +.     .+....++|.+.++..+..+.||..++..|..+...-....+    +..+.+.+..+.++.
T Consensus       577 ~l~si~~la~v~g~-----ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~L~~d~  647 (759)
T KOG0211|consen  577 TLFSIHELAEVLGQ-----EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLETLSSDQ  647 (759)
T ss_pred             HHHHHHHHHHHhcc-----HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHHhccCc
Confidence            8888887765  33     233345788999999999999999999999998875443332    333556666666777


Q ss_pred             CHHHHHHHHHHHHHHH
Q 039940          375 DPEIVTVCLKGLENIL  390 (449)
Q Consensus       375 ~~~~~~~~~~~l~~l~  390 (449)
                      +.+++..+..++..+.
T Consensus       648 ~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  648 ELDVRYRAILAFGSIE  663 (759)
T ss_pred             ccchhHHHHHHHHHHH
Confidence            7777777766665544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.11  E-value=4.3e-05  Score=65.57  Aligned_cols=189  Identities=16%  Similarity=0.125  Sum_probs=119.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhccC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC
Q 039940           32 WSDDNSMQLEAATQFRRLLSIE-RSLPIDEVIQ--AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG  108 (449)
Q Consensus        32 ~s~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  108 (449)
                      .+.+++.+..|+..|..++.+. .......+..  ..++..+...+.+.. ..+...|+.++..++........... ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5688999999999999998765 1222232221  155667777777776 68889999999998874333333332 25


Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC-CC-
Q 039940          109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ-PP-  186 (449)
Q Consensus       109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~-  186 (449)
                      ++|.|++.+.+....+++.|..+|..++...+....      .+..++.....+.++.++..++..+..+....+. .. 
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            689999999999999999999999999876541111      2123444344788999999999999988877651 11 


Q ss_pred             h---hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHH
Q 039940          187 F---DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ  228 (449)
Q Consensus       187 ~---~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  228 (449)
                      .   .....+.+.+..++.+.++++|..+-.++..+...-++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            1   12356888999999999999999999999888766555444

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.07  E-value=7.4e-06  Score=52.21  Aligned_cols=55  Identities=25%  Similarity=0.591  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940          291 KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA  346 (449)
Q Consensus       291 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l  346 (449)
                      +.+|..|+++|++++...++....... .+++.|+.++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998877776666443 6999999999999899999999999875

...

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.005  Score=62.17  Aligned_cols=238  Identities=11%  Similarity=0.029  Sum_probs=148.1

Q ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940          154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI  231 (449)
Q Consensus       154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  231 (449)
                      .+.....++.+..++..+...|..++..++..  .......+...+..-+++.....+...+.|+..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            34445546668899999999999999884221  1222344555566666666778888888899888876652222233


Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-------ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940          232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-------DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI  304 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-------~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  304 (449)
                      ...+.+.++.+ +..+...+..+..+|-.++..       ++. ....+ ..++..+...+... ...+......++..+
T Consensus       737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            33344444444 778888888888888877731       111 01111 12333333333333 333333324455544


Q ss_pred             hcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 039940          305 TAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK  384 (449)
Q Consensus       305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~  384 (449)
                      ..........-.-.+++..+...|.+++++++..|...+.-++..-.........+ .+++.+..+.++...+++.++-.
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHHHHHHHhhhHHHHHHHHH
Confidence            43111111111112466677777888999999999999999998755554444332 37888999888889999999999


Q ss_pred             HHHHHHHhhhhh
Q 039940          385 GLENILKVGEAK  396 (449)
Q Consensus       385 ~l~~l~~~~~~~  396 (449)
                      .+..|++...-.
T Consensus       892 LlekLirkfg~~  903 (1176)
T KOG1248|consen  892 LLEKLIRKFGAE  903 (1176)
T ss_pred             HHHHHHHHhCHH
Confidence            999999876543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.00052  Score=63.48  Aligned_cols=289  Identities=13%  Similarity=0.065  Sum_probs=169.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940           68 PRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL  147 (449)
Q Consensus        68 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  147 (449)
                      |.|-..+.+.- +.+...+++.++.++..+  ....+++ ..+..|-.+|.+.....|-.|+++|..++...|.....+ 
T Consensus       267 pfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc-  341 (898)
T COG5240         267 PFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC-  341 (898)
T ss_pred             HHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec-
Confidence            44444555555 688889999988887643  1222222 347888888999999999999999999998877632221 


Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI  227 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  227 (449)
                        +  +.+-.++ .+.+..+   +.+++..|.........   ...+..+..++++-....+.-++.++..++-.-+...
T Consensus       342 --N--~evEsLI-sd~Nr~I---styAITtLLKTGt~e~i---drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~  410 (898)
T COG5240         342 --N--KEVESLI-SDENRTI---STYAITTLLKTGTEETI---DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK  410 (898)
T ss_pred             --C--hhHHHHh-hcccccc---hHHHHHHHHHcCchhhH---HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence              1  1222233 4444443   34445555555433222   2334444444443333333334444444444434333


Q ss_pred             HHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          228 QAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       228 ~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      ..     .+..|...|. .+..+.+..+..++..+....++.++.     ++..|...+.+.   +..+-+...|+-+..
T Consensus       411 ~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc---ey~~I~vrIL~iLG~  477 (898)
T COG5240         411 LS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC---EYHQITVRILGILGR  477 (898)
T ss_pred             HH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc---chhHHHHHHHHHhcc
Confidence            32     3444555443 456678888888888888776665543     455677777655   233344455555543


Q ss_pred             CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 039940          307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGL  386 (449)
Q Consensus       307 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l  386 (449)
                      ..|...   --...+..+.+-+--++..+|..|..||..++...+..    +..+.+...|.+++.+.|.++|..|..++
T Consensus       478 EgP~a~---~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----~~~~sv~~~lkRclnD~DdeVRdrAsf~l  550 (898)
T COG5240         478 EGPRAK---TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----VSPQSVENALKRCLNDQDDEVRDRASFLL  550 (898)
T ss_pred             cCCCCC---CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----ccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            211100   00013444455555567799999999999888754322    12333566788899999999999999999


Q ss_pred             HHHHHh
Q 039940          387 ENILKV  392 (449)
Q Consensus       387 ~~l~~~  392 (449)
                      .++-..
T Consensus       551 ~~~~~~  556 (898)
T COG5240         551 RNMRLS  556 (898)
T ss_pred             Hhhhhh
Confidence            877643

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.03  E-value=0.0082  Score=58.97  Aligned_cols=103  Identities=15%  Similarity=0.064  Sum_probs=80.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV  146 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  146 (449)
                      ++.+.+=+++++ +.+|..|++.++.+=.  ++...     .+++.+.+++.++++.+|..|+-++.++-+-++.   ..
T Consensus        94 vNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~  162 (757)
T COG5096          94 VNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LY  162 (757)
T ss_pred             HHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hh
Confidence            556666678888 8999999999887654  23222     3578999999999999999999999999766543   45


Q ss_pred             hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      .+.|.+..+..++ .++++.+..+|+.++..+...
T Consensus       163 ~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         163 HELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            5666666666666 889999999999999988766

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.02  E-value=4.7e-05  Score=54.42  Aligned_cols=94  Identities=20%  Similarity=0.343  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC
Q 039940          294 KKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC  373 (449)
Q Consensus       294 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~  373 (449)
                      |+.+..+|+.++.+-+.......+ .++++++..+.+++..||..|+.+|.|++.....+....+-+  +++.|..+..+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence            667778888887654444444444 589999999999999999999999999998754444444333  78899999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 039940          374 ADPEIVTVCLKGLENILK  391 (449)
Q Consensus       374 ~~~~~~~~~~~~l~~l~~  391 (449)
                      .|+.|+..| +.|.++++
T Consensus        80 ~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CchhHHHHH-HHHHHHhc
Confidence            999987666 67776654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.99  E-value=4.5e-05  Score=68.67  Aligned_cols=304  Identities=13%  Similarity=0.109  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHh-----cCCCchhhhHhhcCCHHHH
Q 039940           81 RLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIV-----AHSPGCRNLVLHEEALIPL  155 (449)
Q Consensus        81 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-----~~~~~~~~~~~~~~~i~~l  155 (449)
                      -++..+..+|.-++.+..-.+..++  .....+...+....+.++..+..++..+-     .+.|+.-+.-...+.+..+
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            4556666666666653332222222  23456666677788999999998888774     2333332222222322221


Q ss_pred             H------HHHcccccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHH
Q 039940          156 L------AQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ  228 (449)
Q Consensus       156 ~------~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  228 (449)
                      .      ....++..+..+...|.++.++.... ..-........+.++.-+-++.+.-++..+++++.-+.-++.....
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d  427 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD  427 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence            1      11113334556677788888776554 1111111111122222222334455677888888777766655555


Q ss_pred             HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----Chh---hHHHHHhcCCHHHHHHHh--ccCCchhHHHHHHH
Q 039940          229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG----DDF---QTQCVINHGAVPYLLALL--INNHKKSIKKESCW  299 (449)
Q Consensus       229 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~---~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a~~  299 (449)
                      ...-......+...+.+..-..+..+.|.++|++..    -+.   ..+.+. .-.+..++..-  .+..+.+|+..|..
T Consensus       428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            555556677777777777778899999999999642    111   222221 11233333322  12215679999999


Q ss_pred             HHHHHhcCCH----HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-C
Q 039940          300 TVSNITAGNR----KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-A  374 (449)
Q Consensus       300 ~l~nl~~~~~----~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~  374 (449)
                      +|+|+..--.    -....+.+......+-...-.+..+|+-+||.+++|+..+..-.....=+...+++.|+.++.+ .
T Consensus       507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~  586 (728)
T KOG4535|consen  507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK  586 (728)
T ss_pred             HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence            9999864110    0111111211111122222334789999999999999986311110000112246666666654 4


Q ss_pred             CHHHHHHHHHHHH
Q 039940          375 DPEIVTVCLKGLE  387 (449)
Q Consensus       375 ~~~~~~~~~~~l~  387 (449)
                      |-+++..|..+|.
T Consensus       587 NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  587 NFKVRIRAAAALS  599 (728)
T ss_pred             cceEeehhhhhhc
Confidence            5566666666654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.97  E-value=3.1e-05  Score=55.15  Aligned_cols=87  Identities=28%  Similarity=0.416  Sum_probs=69.5

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940           67 VPRFVEFL-LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL  145 (449)
Q Consensus        67 i~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  145 (449)
                      +|.|++.+ ++++ +.++..|+++|+++..  +         ..++.|..+++++++.+|..++++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899988 6666 8999999999995532  2         34899999999999999999999999872         


Q ss_pred             HhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940          146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLS  176 (449)
Q Consensus       146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~  176 (449)
                        ....++.+.+.+.++.+..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              23377889998966667778888888774

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.0061  Score=60.95  Aligned_cols=232  Identities=13%  Similarity=0.135  Sum_probs=151.6

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940          108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF  187 (449)
Q Consensus       108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  187 (449)
                      .++..|++.+++.+..+|..|+..++.++...|.    .+...++...+.++....++..-..+|.+|..++..+ -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            4677788888889999999999999999988772    2233466677776655556777788999999999886 2222


Q ss_pred             hhhhchHHHHHHhhcC--------CCHHHHHHHHHHHHHcccCChhH-HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          188 DQVRPVLPALAQLIHL--------DDEEVLRNVCWTLSNLSDGTNDK-IQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~--------~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      .....++|.+.+.+.-        ....+|..++..++.+++..... .+.+.+.=....+...+-+++-..|..|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            3346788888877753        24678888888888877654322 22222222223344455667777788777776


Q ss_pred             HHhhcC--Ch-hh----------------------HHHHH-hcCCHHHHHHH-----hccCCchhHHHHHHHHHHHHhcC
Q 039940          259 GNIVTG--DD-FQ----------------------TQCVI-NHGAVPYLLAL-----LINNHKKSIKKESCWTVSNITAG  307 (449)
Q Consensus       259 ~~l~~~--~~-~~----------------------~~~~~-~~~~l~~L~~l-----l~~~~~~~v~~~a~~~l~nl~~~  307 (449)
                      -...-.  +- ..                      ...+. -.+....++.-     +.+- |..+|+.++++|.+++..
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence            544321  10 00                      00011 11223333333     3445 889999999999998765


Q ss_pred             CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          308 NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       308 ~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      .++.    ...+.++.+++.....+...+.-+..+.+.++..
T Consensus       575 ~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~  612 (1133)
T KOG1943|consen  575 EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA  612 (1133)
T ss_pred             hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence            5542    3447889999998888888888777777766654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.023  Score=57.11  Aligned_cols=343  Identities=13%  Similarity=0.128  Sum_probs=187.6

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ..++.+...+++.|..++..|+..+.++.+..  + .  -....++...++++...+.+..=..|+-+|+.++...----
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~--~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P--ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H--HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            45666777778889999999999999998764  2 1  12223456666655544434555678889999887321111


Q ss_pred             HHHHhCCChHHHHHhhCC--------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc----ccccHHHHH
Q 039940          102 KVLIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN----EHARLSMLR  169 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~~~~~  169 (449)
                      ..+  ..++|.+++.+.-        ....+|..|+.+++.+++.....  .+  .+.+..+...+.    -+.+...++
T Consensus       416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l--~p~l~~L~s~LL~~AlFDrevncRR  489 (1133)
T KOG1943|consen  416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL--KPVLQSLASALLIVALFDREVNCRR  489 (1133)
T ss_pred             HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh--hHHHHHHHHHHHHHHhcCchhhHhH
Confidence            111  1356777776642        34789999999999998654221  11  112333333221    355677899


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH-hhCCCCC
Q 039940          170 IGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE-LLGHPSP  248 (449)
Q Consensus       170 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~  248 (449)
                      .|..++-......++..     .+++.+. ..+--....+.++-..+..-....+.....++     ..++. -+.+=+.
T Consensus       490 AAsAAlqE~VGR~~n~p-----~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HWd~  558 (1133)
T KOG1943|consen  490 AASAALQENVGRQGNFP-----HGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHWDV  558 (1133)
T ss_pred             HHHHHHHHHhccCCCCC-----Cchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccccH
Confidence            99888887766542221     1222111 11111122233333333222222222222222     22222 1444567


Q ss_pred             cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---CC---
Q 039940          249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK---QIQAVID---AG---  319 (449)
Q Consensus       249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~---~~---  319 (449)
                      .+++.+.++|.+++...++    ....+.+++++....++ +...+.....+.+.++.....   ....+.+   ++   
T Consensus       559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~  633 (1133)
T KOG1943|consen  559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLS  633 (1133)
T ss_pred             HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhh
Confidence            7999999999998765443    34457888888888888 877777766666666542110   1111111   12   


Q ss_pred             ChHHHHHHh-hcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLL-QDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll-~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      +++.+.... ..+ ..-++...+..+.++.... ......++-.+.-..+.+.+...+ .++..+.+++..++...
T Consensus       634 ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y  707 (1133)
T KOG1943|consen  634 IIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTY  707 (1133)
T ss_pred             hccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHH
Confidence            234443332 222 3456666677777777653 333333333334445555554444 67778888877776543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.91  E-value=0.0038  Score=61.06  Aligned_cols=315  Identities=11%  Similarity=0.066  Sum_probs=188.9

Q ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940           26 AMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL  104 (449)
Q Consensus        26 ~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  104 (449)
                      .+...+. ++-|.....+.+.+..+.+..  .-...+. .-++...+..+.-...+-++..|+++++..+.  +... .-
T Consensus       453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl-~~  526 (1005)
T KOG2274|consen  453 MIDNGLVYQESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVL-LS  526 (1005)
T ss_pred             HHHhhcccccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceec-cc
Confidence            3344443 456777778888888776531  1111111 11244445555544446788888888888874  1111 11


Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCC
Q 039940          105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKP  183 (449)
Q Consensus       105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~  183 (449)
                      ...+++..|.++....+.++-...+.+|+..+..+|+..... +....|..+..+. .+.||.+...+-.++..++... 
T Consensus       527 ~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-  604 (1005)
T KOG2274|consen  527 LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-  604 (1005)
T ss_pred             cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-
Confidence            234678888888888889999999999999999998875544 5566666666654 4567877777777777777643 


Q ss_pred             CCChhhhhchHHHHHHhhcCCC----HHHHHHHHHHHHHcccCCh-hHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHH
Q 039940          184 QPPFDQVRPVLPALAQLIHLDD----EEVLRNVCWTLSNLSDGTN-DKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRT  257 (449)
Q Consensus       184 ~~~~~~~~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~  257 (449)
                      ...-.+....+|.++..+..++    .....-++..|..+.++.+ ...+.++. -.+|.+.++.-+ ++.++...+-.|
T Consensus       605 ~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~Ec  683 (1005)
T KOG2274|consen  605 ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATEC  683 (1005)
T ss_pred             HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHH
Confidence            2222334678999999998765    5566666777776665543 33333443 456777776544 667788899999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHH--HHHHHhccCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHCCChHHHHHHhhcC
Q 039940          258 VGNIVTGDDFQTQCVINHGAVP--YLLALLINNHKKSIKKESCWTVSNITA----GNRKQIQAVIDAGLIVPLVNLLQDA  331 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~--~L~~ll~~~~~~~v~~~a~~~l~nl~~----~~~~~~~~l~~~~~~~~L~~ll~~~  331 (449)
                      |..+.....++...--..++..  .++..++.=-+++.-..++..+|.+..    +-.......++.-.-..+.++...+
T Consensus       684 Lra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae  763 (1005)
T KOG2274|consen  684 LRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAE  763 (1005)
T ss_pred             HHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhh
Confidence            9888876555443333332222  333333211133344444545554432    2222222211111122344444556


Q ss_pred             chhHHHHHHHHHHHhhcc
Q 039940          332 EFDIKKEAAWAISNATKA  349 (449)
Q Consensus       332 ~~~v~~~a~~aL~~l~~~  349 (449)
                      ...+......++++++..
T Consensus       764 ~lsviQsLi~VfahL~~t  781 (1005)
T KOG2274|consen  764 TLSVIQSLIMVFAHLVHT  781 (1005)
T ss_pred             hHHHHHHHHHHHHHHhhC
Confidence            788888888899998876

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.91  E-value=0.017  Score=54.38  Aligned_cols=304  Identities=17%  Similarity=0.156  Sum_probs=168.7

Q ss_pred             CHHHHHHHHHHHHHHhccCCCC----cHHHHHHcCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHhcCCChhhh-HH
Q 039940           35 DNSMQLEAATQFRRLLSIERSL----PIDEVIQAGIVPRFVEFLLRE----D--YPRLQFEAAWVLTNIASGTSVNT-KV  103 (449)
Q Consensus        35 ~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~~~i~~L~~ll~~~----~--~~~~~~~a~~~L~~l~~~~~~~~-~~  103 (449)
                      +...-...+..|..+.......    ......+..+++.+.++....    .  ++.+...+..++..+...-+... +.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4445555666666665543222    223344555788887765322    1  13555556666666655333322 22


Q ss_pred             HHhCCChHHHHH-----hhC-CCC--hHHHHHHHHHHHHH-hcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940          104 LIDHGAVPIFVK-----LLA-SPS--DDVREQAVWALGNI-VAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT  174 (449)
Q Consensus       104 ~~~~~~i~~L~~-----~l~-~~~--~~~~~~a~~~L~~l-~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  174 (449)
                      +.+ .+...+..     -+. ..+  .......+..+..+ +.-++...-. .....+..++.......++..+..++.+
T Consensus       136 ~~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~  213 (415)
T PF12460_consen  136 ILD-ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQL  213 (415)
T ss_pred             HHH-HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            221 22222220     000 111  11222222222222 2222222111 1112566777777666778888888888


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhh-cCCC----HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc
Q 039940          175 LSNLCKGKPQPPFDQVRPVLPALAQLI-HLDD----EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS  249 (449)
Q Consensus       175 l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~  249 (449)
                      ++.+....+...  .....+..+...+ ...+    ........|....+.-.......     .+++.++.++.+  ++
T Consensus       214 la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~  284 (415)
T PF12460_consen  214 LASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PE  284 (415)
T ss_pred             HHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hh
Confidence            888877643222  3345555555444 2223    33344444555444432222222     346677888777  66


Q ss_pred             chhhHHHHHHHhhcCChh--------hHHHHHhc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039940          250 VLIPALRTVGNIVTGDDF--------QTQCVINH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID  317 (449)
Q Consensus       250 v~~~a~~~l~~l~~~~~~--------~~~~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  317 (449)
                      +...+...++-+....+.        ..+.+.+.    .++|.|++..+.. +...+.....+|+.+..+.|..+-.---
T Consensus       285 ~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~~~l  363 (415)
T PF12460_consen  285 LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLLPEL  363 (415)
T ss_pred             hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence            788888888888776332        22223332    3566777777766 6668888899999999876654322222


Q ss_pred             CCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       318 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                      ..++|.+++.|..++.+++..++.+|..+....
T Consensus       364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            458999999999999999999999999999864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.90  E-value=7.6e-05  Score=53.09  Aligned_cols=87  Identities=22%  Similarity=0.283  Sum_probs=70.0

Q ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940          152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI  231 (449)
Q Consensus       152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  231 (449)
                      ++.+++.+.+++++.++..+++++..+-          ....++.+..++.++++.++..++++|+.+.           
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence            4678888878899999999999999432          2378999999999999999999999999873           


Q ss_pred             HhCcHHHHHHhhCCCCCc-chhhHHHHHH
Q 039940          232 EAGVCGPLVELLGHPSPS-VLIPALRTVG  259 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~~~~-v~~~a~~~l~  259 (449)
                      ....++.|..++.+++.. ++..|+.+|+
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            124778999989886554 5888888774

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.011  Score=58.58  Aligned_cols=299  Identities=10%  Similarity=0.090  Sum_probs=166.2

Q ss_pred             HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhC------C--CChHHHHHHHHHHHHHhc---CCCchhhhHhhcCCHH
Q 039940           85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA------S--PSDDVREQAVWALGNIVA---HSPGCRNLVLHEEALI  153 (449)
Q Consensus        85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~------~--~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~  153 (449)
                      +|..++..++...    .+-.-.++++.+++.+.      .  .++.-.+.|+.++++++.   ....+++.+ +.-.++
T Consensus       391 Aa~~~l~~~~~KR----~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~  465 (1010)
T KOG1991|consen  391 AALDFLTTLVSKR----GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVN  465 (1010)
T ss_pred             HHHHHHHHHHHhc----chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHH
Confidence            5666666666522    11122356777777776      2  346777889999999873   122222322 333445


Q ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940          154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIE  232 (449)
Q Consensus       154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  232 (449)
                      .++..+ +++.--++..|||++..++..+ .........++....+.+. +++-.++..+..+|..+..+.......+..
T Consensus       466 hVfP~f-~s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~  543 (1010)
T KOG1991|consen  466 HVFPEF-QSPYGYLRARACWVLSQFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA  543 (1010)
T ss_pred             HhhHhh-cCchhHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence            555555 6777789999999999999664 3344445677777778887 667889999999999888776543221221


Q ss_pred             h--CcHHHHHHhhCCCCCcchhhHHHHH-HHhhcCChhhHHHHHhcCCHHHHHHHhcc---C--CchhHHHHHHHHHHHH
Q 039940          233 A--GVCGPLVELLGHPSPSVLIPALRTV-GNIVTGDDFQTQCVINHGAVPYLLALLIN---N--HKKSIKKESCWTVSNI  304 (449)
Q Consensus       233 ~--~~~~~L~~ll~~~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~--~~~~v~~~a~~~l~nl  304 (449)
                      .  +.++.|+.+.+..+.+....++..+ +..+..-......+ -..+.....+++..   .  .+.+-...|.++|..+
T Consensus       544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti  622 (1010)
T KOG1991|consen  544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTI  622 (1010)
T ss_pred             hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence            1  5566777777665555444444433 22221111111111 12345556666653   1  0222333455555544


Q ss_pred             hc------CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHH
Q 039940          305 TA------GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI  378 (449)
Q Consensus       305 ~~------~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~  378 (449)
                      ..      ..++..+. ++..+++.+-.++.++-.++-++++..+.++... .++--..++.  +++.+...+....-+-
T Consensus       623 ~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~-~~~Isp~mW~--ll~li~e~~~~~~~dy  698 (1010)
T KOG1991|consen  623 STILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL-SKEISPIMWG--LLELILEVFQDDGIDY  698 (1010)
T ss_pred             HHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh-hcccCHHHHH--HHHHHHHHHhhhhHHH
Confidence            32      22222222 2334666666777777778888888777776654 2222222222  4555555555444444


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 039940          379 VTVCLKGLENILKVGEA  395 (449)
Q Consensus       379 ~~~~~~~l~~l~~~~~~  395 (449)
                      -....-+|.|++..+..
T Consensus       699 f~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  699 FTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             HHHHHHHHhhheeeCch
Confidence            44555555555555443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.00012  Score=65.95  Aligned_cols=308  Identities=16%  Similarity=0.147  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-----ChhhhHHHHhCCCh
Q 039940           36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG-----TSVNTKVLIDHGAV  110 (449)
Q Consensus        36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i  110 (449)
                      ..+++++...|..++..-   ....+....+...+...+.... ++++..+..++..+...     .|+..+.-...|.+
T Consensus       269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f  344 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF  344 (728)
T ss_pred             chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence            457777777777776431   1222222223333444455666 89999999988877641     22222222222211


Q ss_pred             HHHHH-------hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC
Q 039940          111 PIFVK-------LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP  183 (449)
Q Consensus       111 ~~L~~-------~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~  183 (449)
                      -...-       .-++.-+..+..++.++.++.......-+.- .....+.+..-..++.+.-++..|.+++.-+.-+..
T Consensus       345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~  423 (728)
T KOG4535|consen  345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND-RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC  423 (728)
T ss_pred             HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence            11111       1112334566667777777753221100000 001112222222233334455566666665555542


Q ss_pred             -CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC----Chh---HHHHHHHhCcHHHHHHhhC---CCCCcchh
Q 039940          184 -QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG----TND---KIQAVIEAGVCGPLVELLG---HPSPSVLI  252 (449)
Q Consensus       184 -~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~----~~~---~~~~~~~~~~~~~L~~ll~---~~~~~v~~  252 (449)
                       .........+...+...+.+..-..+..+.|+++|++..    .+.   ....+ ..-.+..+...-.   -.+..++.
T Consensus       424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~-sg~ll~~~~~~A~~~~Ad~dkV~~  502 (728)
T KOG4535|consen  424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF-SGLLLLKMLRSAIEASADKDKVKS  502 (728)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhh
Confidence             223344466677777777777788899999999998742    121   11111 1112233333222   24567999


Q ss_pred             hHHHHHHHhhcCChhhHH---HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHh
Q 039940          253 PALRTVGNIVTGDDFQTQ---CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-QIQAVIDAGLIVPLVNLL  328 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~~~~---~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~ll  328 (449)
                      .+..+|+|+...-+...+   ..+..+.+..+....-.+....|+++||.+++|+..+..- ....=+-..+++.|..++
T Consensus       503 navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv  582 (728)
T KOG4535|consen  503 NAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV  582 (728)
T ss_pred             HHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence            999999998754221111   0111122222322222233778999999999999764211 000011223577777777


Q ss_pred             hcC-chhHHHHHHHHHHHhhcc
Q 039940          329 QDA-EFDIKKEAAWAISNATKA  349 (449)
Q Consensus       329 ~~~-~~~v~~~a~~aL~~l~~~  349 (449)
                      .+. +.++|.+|+.+|..-...
T Consensus       583 ~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  583 TSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             HHhccceEeehhhhhhcCCCCc
Confidence            655 899999999998876554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.81  E-value=2e-05  Score=50.25  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=46.1

Q ss_pred             CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940          248 PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI  304 (449)
Q Consensus       248 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  304 (449)
                      |.+|..|+++|++++...+...+. ....+++.|..+|.++ ++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            357899999999988776666555 4456999999999988 889999999999975

...

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.78  E-value=0.025  Score=50.77  Aligned_cols=223  Identities=10%  Similarity=0.120  Sum_probs=155.2

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH-----HHHHHHh--CcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK-----IQAVIEA--GVCGPLVELLGHPSPSVLIPALRTVGNIVT  263 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~  263 (449)
                      .+.+..++..|..-+-+.+..+.....++.+...+.     .+.+...  .++..|+..-  +++++...+-..|..++.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            477888888888888999999999998887664322     2223221  2333333332  456666666666766666


Q ss_pred             CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHhhcCchhHHHHHH
Q 039940          264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---GLIVPLVNLLQDAEFDIKKEAA  340 (449)
Q Consensus       264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~v~~~a~  340 (449)
                      . +...+.++....+..+.+.+..+ +-++...|..++..+....+.....++..   .++...-.++.+++.-+|..++
T Consensus       153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence            5 66777888888999999999999 99999999999999877666666666643   3577888889999999999999


Q ss_pred             HHHHHhhccCCHHHH----HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940          341 WAISNATKAGTQEQI----KYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA  416 (449)
Q Consensus       341 ~aL~~l~~~~~~~~~----~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ..|+.+...  +.+.    +++-+..-+..++.+|+++...++..|..++.-++....+..          +....+...
T Consensus       231 kLL~ellld--r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~----------~I~~iL~~N  298 (335)
T PF08569_consen  231 KLLGELLLD--RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP----------PIVDILIKN  298 (335)
T ss_dssp             HHHHHHHHS--GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH----------HHHHHHHHT
T ss_pred             HHHHHHHHc--hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh----------HHHHHHHHH
Confidence            999999974  3332    344445678999999999999999999999998887765432          345555443


Q ss_pred             --chHHHHHHHhcCC
Q 039940          417 --EGFKKIEDLKSHG  429 (449)
Q Consensus       417 --~~~~~l~~l~~~~  429 (449)
                        ..++-+..+..+.
T Consensus       299 r~kLl~fl~~f~~~~  313 (335)
T PF08569_consen  299 REKLLRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHHHHHTTTTT-
T ss_pred             HHHHHHHHHhCCCCC
Confidence              2456666665554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.77  E-value=0.00014  Score=51.99  Aligned_cols=66  Identities=14%  Similarity=0.317  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940           83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAHSPGCRNLVLH  148 (449)
Q Consensus        83 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  148 (449)
                      +...+++|+|++..++...+.+.+.|++|.++....  ..+|-+++.|++++.|++.++++.+..+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            566789999999999999999999999999999764  577999999999999999999988877754

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.014  Score=56.12  Aligned_cols=320  Identities=13%  Similarity=0.139  Sum_probs=192.2

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC
Q 039940           29 AGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG  108 (449)
Q Consensus        29 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  108 (449)
                      +-|+.++.-+|-..++.|+++- .  .+-.     ...+|.+.+.|.+.. .-++.+|..++..+....    +.++ ..
T Consensus       106 kDLQHPNEyiRG~TLRFLckLk-E--~ELl-----epl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~-pD  171 (948)
T KOG1058|consen  106 KDLQHPNEYIRGSTLRFLCKLK-E--PELL-----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLI-PD  171 (948)
T ss_pred             hhccCchHhhcchhhhhhhhcC-c--HHHh-----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhc-CC
Confidence            4445566677777777776662 1  1111     345788888899998 899999999998887631    1122 13


Q ss_pred             ChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc--ccccHHHHHHHHHHHHHhhcCCCCC
Q 039940          109 AVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN--EHARLSMLRIGTWTLSNLCKGKPQP  185 (449)
Q Consensus       109 ~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~l~~l~~~~~~~  185 (449)
                      +-..+-++|. ..++....+|...|...   +++        .++..+.....  .+.++..+...+..+...|...|..
T Consensus       172 apeLi~~fL~~e~DpsCkRNAFi~L~~~---D~E--------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~  240 (948)
T KOG1058|consen  172 APELIESFLLTEQDPSCKRNAFLMLFTT---DPE--------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE  240 (948)
T ss_pred             hHHHHHHHHHhccCchhHHHHHHHHHhc---CHH--------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH
Confidence            3344444443 46788888887766644   222        12333333332  2345666666677777776644322


Q ss_pred             ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcC
Q 039940          186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       186 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~  264 (449)
                      .    ...+..+..+|.+.++.++-.+..++.+++..+.. .+..     ...++.++.. ++..+..-.+--|..+...
T Consensus       241 ~----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a-lk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~  310 (948)
T KOG1058|consen  241 K----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA-LKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKAL  310 (948)
T ss_pred             h----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH-HHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhh
Confidence            2    35677888899888999999999998888855432 2211     2334444332 3334444444444444432


Q ss_pred             ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHH
Q 039940          265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI  343 (449)
Q Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL  343 (449)
                      +..    ++ .|.+--++.+|+++ |-++|+.+......++. ++-+.+-.+++..+...--. =.+++...|.....++
T Consensus       311 ~~~----il-~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLikti  383 (948)
T KOG1058|consen  311 HEK----IL-QGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTI  383 (948)
T ss_pred             hHH----HH-HHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHH
Confidence            222    11 24555677888888 99999999988888875 45443333332111111100 0112445677788888


Q ss_pred             HHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          344 SNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       344 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      ..++.. -++...     .+++.|++.+.+.++.--..++..+...++..++.
T Consensus       384 h~cav~-Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L  430 (948)
T KOG1058|consen  384 HACAVK-FPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL  430 (948)
T ss_pred             HHHhhc-ChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH
Confidence            888775 344433     36888999999888887777777777777776654

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.0021  Score=61.35  Aligned_cols=137  Identities=18%  Similarity=0.161  Sum_probs=97.0

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940          192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQ  270 (449)
Q Consensus       192 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~  270 (449)
                      ++=+.+.+++.+.|+-+|...+.++.---.+...       .+.+..|+.. +++.+.+||..|..+|+-++..+++.  
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence            5556777888888888888877666532222211       1456666666 66788999999999999998876643  


Q ss_pred             HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                             .+..+.+|..+.++.||..++.+|+-.|.+.-..  .     .+..|-.+..+...-||+.|+.+++-+....
T Consensus       590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~--e-----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK--E-----AINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--H-----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                   4567778877769999999999999998753211  1     2334445556667789999999988877654


Q ss_pred             C
Q 039940          351 T  351 (449)
Q Consensus       351 ~  351 (449)
                      +
T Consensus       656 t  656 (929)
T KOG2062|consen  656 T  656 (929)
T ss_pred             c
Confidence            3

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.76  E-value=0.0087  Score=56.51  Aligned_cols=239  Identities=16%  Similarity=0.131  Sum_probs=149.8

Q ss_pred             hhcHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-----CCHHHHHH
Q 039940           21 LEILPAMVAGV----------WSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-----DYPRLQFE   85 (449)
Q Consensus        21 ~~~i~~l~~~l----------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~~   85 (449)
                      .+++..+.+.-          .+.++.+..+|+++|+|..-.+ ...+..+.+.|..+.+++.|+..     + .++...
T Consensus        21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl   98 (446)
T PF10165_consen   21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFL   98 (446)
T ss_pred             HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHH
Confidence            34555555544          3567999999999999998765 56677788999999999999876     4 688999


Q ss_pred             HHHHHHHhcCCChhhhHHHHhC-CChHHHHHhhCC-----------------CChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940           86 AAWVLTNIASGTSVNTKVLIDH-GAVPIFVKLLAS-----------------PSDDVREQAVWALGNIVAHSPGCRNLVL  147 (449)
Q Consensus        86 a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~  147 (449)
                      ..++|.-++...++.+..+++. +++..+...+..                 .+......++.++.|+....+.... -.
T Consensus        99 ~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~  177 (446)
T PF10165_consen   99 DSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EE  177 (446)
T ss_pred             HHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hh
Confidence            9999999888778888777765 778877776621                 1345566788889999766554332 11


Q ss_pred             hcCCHHHHHHHHccc--------ccHHHHHHHHHHHHHhhcCC------------CCCChhhhhchHHHHHHhhc----C
Q 039940          148 HEEALIPLLAQLNEH--------ARLSMLRIGTWTLSNLCKGK------------PQPPFDQVRPVLPALAQLIH----L  203 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~--------~~~~~~~~a~~~l~~l~~~~------------~~~~~~~~~~~l~~l~~ll~----~  203 (449)
                      ....++.++..+...        +......+++.+|.|+-...            ...........+..++.+|.    .
T Consensus       178 ~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~  257 (446)
T PF10165_consen  178 FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDK  257 (446)
T ss_pred             hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHh
Confidence            233455555544322        23456667777777662110            00000111233444444443    2


Q ss_pred             C----CHHHHHHHHHHHHHcccCChhHHHHHHHhC-----------------cHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 039940          204 D----DEEVLRNVCWTLSNLSDGTNDKIQAVIEAG-----------------VCGPLVELLGHPSPSVLIPALRTVGNIV  262 (449)
Q Consensus       204 ~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-----------------~~~~L~~ll~~~~~~v~~~a~~~l~~l~  262 (449)
                      .    -.+.....+.+|.+++.......+ .+...                 +-..|++++.++.+.++..+...+..+|
T Consensus       258 ~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc  336 (446)
T PF10165_consen  258 YEALKLDELLTPLLTLLTRLARAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLC  336 (446)
T ss_pred             cCcccchhhHhhHHHHHHHHHHhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence            2    235777888888888877654433 33333                 3445555555555556666666665555


Q ss_pred             c
Q 039940          263 T  263 (449)
Q Consensus       263 ~  263 (449)
                      .
T Consensus       337 ~  337 (446)
T PF10165_consen  337 K  337 (446)
T ss_pred             h
Confidence            4

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.013  Score=56.78  Aligned_cols=248  Identities=16%  Similarity=0.163  Sum_probs=128.7

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940          164 RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV  240 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~  240 (449)
                      +..++.++++.+..+-..+        .-.+..++..+..+   ++-.+....+....+...+.     ....-+.+.+-
T Consensus       185 ~~m~QyHalglLyqirk~d--------rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~-----~~~s~~~~fl~  251 (865)
T KOG1078|consen  185 NIMVQYHALGLLYQIRKND--------RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQ-----QADSPLFPFLE  251 (865)
T ss_pred             HHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcc-----cchhhHHHHHH
Confidence            4467788888888876654        22333333333321   22111111222222222221     11123566777


Q ss_pred             HhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 039940          241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL  320 (449)
Q Consensus       241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  320 (449)
                      .++.+....+..+|..++.++...++....     ..+..|-.+++++ ...+|-.|.++|..++...|+...   .  .
T Consensus       252 s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P~~v~---~--c  320 (865)
T KOG1078|consen  252 SCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHPQAVT---V--C  320 (865)
T ss_pred             HHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCCcccc---c--c
Confidence            778888888999999999888765543322     2667777788888 889999999999999864443221   0  1


Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccC
Q 039940          321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRG  400 (449)
Q Consensus       321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  400 (449)
                      =..|-.++.+.+   |..|..++..+...|......+|..     .+....++-+.+....+.+++..++...+..+.  
T Consensus       321 N~elE~lItd~N---rsIat~AITtLLKTG~e~sv~rLm~-----qI~~fv~disDeFKivvvdai~sLc~~fp~k~~--  390 (865)
T KOG1078|consen  321 NLDLESLITDSN---RSIATLAITTLLKTGTESSVDRLMK-----QISSFVSDISDEFKIVVVDAIRSLCLKFPRKHT--  390 (865)
T ss_pred             chhHHhhhcccc---cchhHHHHHHHHHhcchhHHHHHHH-----HHHHHHHhccccceEEeHHHHHHHHhhccHHHH--
Confidence            112333343333   3445556666666666566555443     222333322222223333333333333322221  


Q ss_pred             CCCCcccHHHHHHHhcchHHHHHHH------hcCCCHHHHHHHHHHHHHhcCCC
Q 039940          401 STIGDVNQYARLVEGAEGFKKIEDL------KSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                         +-.+-....+++.||++--..+      +-..+++-++.+..-+..|++++
T Consensus       391 ---~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc  441 (865)
T KOG1078|consen  391 ---VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC  441 (865)
T ss_pred             ---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc
Confidence               1233345666666665432221      22345666666666666666543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.0044  Score=62.54  Aligned_cols=237  Identities=14%  Similarity=0.133  Sum_probs=148.5

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 039940          119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP  195 (449)
Q Consensus       119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  195 (449)
                      +.+..+|..+..+|..++.. +......  ...+..+.+.+.   ++.....+...+.++..+....+..........++
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~--~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLV--EQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHH--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35788999999999999876 3332222  122333333332   44566778888888888888766444444555666


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHccc--CC----hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhH
Q 039940          196 ALAQLIHLDDEEVLRNVCWTLSNLSD--GT----NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  269 (449)
Q Consensus       196 ~l~~ll~~~~~~~~~~~~~~l~~l~~--~~----~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~  269 (449)
                      -++-.++..|...+..+..+|..++.  ..    .+.....++ .++..+...+-.+...+....+.++..+........
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ln-efl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l  820 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILN-EFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL  820 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHH-HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence            65555677788889999888888872  10    011111111 233333333333333333333445555544322222


Q ss_pred             HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          270 QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       270 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      ....-.++++.+..+|.+. .+++++.|...+..++...|+..-.-....+++.+..++++....++..+...|..|+..
T Consensus       821 d~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk  899 (1176)
T KOG1248|consen  821 DDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK  899 (1176)
T ss_pred             cHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            2222235666777778888 999999999999999986665433333345889999999888899999999999888887


Q ss_pred             CCHHHHHHHHH
Q 039940          350 GTQEQIKYLVR  360 (449)
Q Consensus       350 ~~~~~~~~l~~  360 (449)
                      ...+..+.+.+
T Consensus       900 fg~~eLe~~~p  910 (1176)
T KOG1248|consen  900 FGAEELESFLP  910 (1176)
T ss_pred             hCHHHHHhhCH
Confidence            66666665554

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.70  E-value=0.0014  Score=64.17  Aligned_cols=166  Identities=14%  Similarity=0.123  Sum_probs=126.6

Q ss_pred             cccHHHHHHHH-HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940          162 HARLSMLRIGT-WTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV  240 (449)
Q Consensus       162 ~~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~  240 (449)
                      +.+...+..|+ .+++.++.+.+      .....+-+++...+.|.++++-+-.-+.+.+...++..-     -.+..+.
T Consensus        30 s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l-----LavNti~   98 (757)
T COG5096          30 SSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL-----LAVNTIQ   98 (757)
T ss_pred             ccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHH
Confidence            33344444444 56667776653      346677777777788999999988888888888885433     2356677


Q ss_pred             HhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 039940          241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL  320 (449)
Q Consensus       241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  320 (449)
                      +=++++++.+|..|+++++.+-.  ++..     ..+++.+.+++.++ ++.||+.|+.++.++-.-+++   .+.+.|.
T Consensus        99 kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~  167 (757)
T COG5096          99 KDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGL  167 (757)
T ss_pred             hhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccH
Confidence            77889999999999999976643  2222     24688899999999 999999999999999876665   3456688


Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          321 IVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      +..+..++.+.+|.+..+|..+|..+-..
T Consensus       168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         168 IDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            99999999999999999999999988653

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.69  E-value=0.022  Score=56.11  Aligned_cols=242  Identities=14%  Similarity=0.093  Sum_probs=155.3

Q ss_pred             hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940           73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA  151 (449)
Q Consensus        73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  151 (449)
                      .+.....+.+...|.+++...+.....+...+-  .++...+..+. +..+.++..|+++++..++..+ .. . ...++
T Consensus       457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~-~-~~p~i  531 (1005)
T KOG2274|consen  457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LL-S-LQPMI  531 (1005)
T ss_pred             hcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cc-c-cchHH
Confidence            344444467667888888877763322222111  12344444443 3556777888888888773221 11 1 12234


Q ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--CCCHHHHHHHHHHHHHcccCChhHHHH
Q 039940          152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH--LDDEEVLRNVCWTLSNLSDGTNDKIQA  229 (449)
Q Consensus       152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~  229 (449)
                      +..++.+. ...+.++....+.+|+..+..+|.........+.|....+..  ++||.+...+..++..++...... . 
T Consensus       532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g-  608 (1005)
T KOG2274|consen  532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-G-  608 (1005)
T ss_pred             HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-c-
Confidence            44555555 566788899999999999999887777777778887776654  567877777777777776532221 1 


Q ss_pred             HHHhCcHHHHHHhhCCCC----CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940          230 VIEAGVCGPLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       230 ~~~~~~~~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  305 (449)
                      -+....+|.+++.|..+.    .....-++-.|.-+.++.+.-....+-...+|.+.++.-+..|..+...+.-+|..+.
T Consensus       609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            223367899999998866    4556667777776766654433334444578888887655548889999999999999


Q ss_pred             cCCHHHHHHHHHCCChH
Q 039940          306 AGNRKQIQAVIDAGLIV  322 (449)
Q Consensus       306 ~~~~~~~~~l~~~~~~~  322 (449)
                      ..+.++....-..++..
T Consensus       689 s~~~eq~~t~~~e~g~~  705 (1005)
T KOG2274|consen  689 SVTLEQLLTWHDEPGHN  705 (1005)
T ss_pred             hcCHHHHHhhccCCCcc
Confidence            87777665554444333

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.65  E-value=0.0026  Score=49.48  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=103.6

Q ss_pred             HHHHHhCcHHHHHHhhCCCCC------cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHH
Q 039940          228 QAVIEAGVCGPLVELLGHPSP------SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWT  300 (449)
Q Consensus       228 ~~~~~~~~~~~L~~ll~~~~~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~  300 (449)
                      ..+++.+++..|+.++.++..      ++...++.++..+..+. ......+...++.++......+. +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            346777999999999988653      56677888888887763 33334556678888888887654 68899999999


Q ss_pred             HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940          301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV  359 (449)
Q Consensus       301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~  359 (449)
                      |-+++..++.....+.+.=-++.|+..+...+++++.+|...+..+...++++.++.+.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            99999888776666666677999999999999999999999999998887776666544

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0051  Score=59.34  Aligned_cols=279  Identities=14%  Similarity=0.107  Sum_probs=132.2

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940           72 EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA  151 (449)
Q Consensus        72 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  151 (449)
                      ..+.+.. +.+...|++++.++...++....     ..+..|--+++++...+|-.|.++|..++...|......   + 
T Consensus       252 s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c---N-  321 (865)
T KOG1078|consen  252 SCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC---N-  321 (865)
T ss_pred             HHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc---c-
Confidence            3444555 67778888888887764432221     257777778888888888888888888887666532111   1 


Q ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940          152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI  231 (449)
Q Consensus       152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  231 (449)
                       .-+-.++ .+.+..+   +..++..+.........   ...+..+..++..=+.+.+.-+..++..+|..-+...    
T Consensus       322 -~elE~lI-td~NrsI---at~AITtLLKTG~e~sv---~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~----  389 (865)
T KOG1078|consen  322 -LDLESLI-TDSNRSI---ATLAITTLLKTGTESSV---DRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH----  389 (865)
T ss_pred             -hhHHhhh-cccccch---hHHHHHHHHHhcchhHH---HHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH----
Confidence             1122222 2222222   22223333222211111   1122222222222122222222333333332222111    


Q ss_pred             HhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940          232 EAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       232 ~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  310 (449)
                       .+.+..|..+|.. +..+.+.....++..+...+++.+.     .++..|...+.+.   +...-+.+.|.-+....|.
T Consensus       390 -~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG~EgP~  460 (865)
T KOG1078|consen  390 -TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLGKEGPK  460 (865)
T ss_pred             -HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHhccCCC
Confidence             1334555555544 3344556666666666554444332     2344455555433   2333444444444331111


Q ss_pred             HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940          311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~  390 (449)
                      .   ......+..+.+...-++..+|..|..++.++... ++..     ...+.-.|.+++.+.|.+++..|-..+..+-
T Consensus       461 a---~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  461 A---PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             C---CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            0   00112333344444445667777777777777632 2211     1224445566666777777777777766665

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.64  E-value=0.00017  Score=42.59  Aligned_cols=39  Identities=33%  Similarity=0.690  Sum_probs=35.8

Q ss_pred             hhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHh
Q 039940           98 SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIV  136 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  136 (449)
                      ++.+..+.+.|+++.|++++.+++++++..++|+|+|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347788899999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.59  E-value=0.11  Score=52.90  Aligned_cols=143  Identities=15%  Similarity=0.180  Sum_probs=107.3

Q ss_pred             cHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940          235 VCGPLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       235 ~~~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  310 (449)
                      +.|.++...+.    ++|+++..|.-+|+.+..-+.....     .-++.|+.+|...+++.+|.++.-+++.++..-|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            34445555532    4567888888888888766555443     35788999998554999999999999999876555


Q ss_pred             HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940          311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~  390 (449)
                      .++.     .-+.|.+.+.+.++.||+.|..+++++...   +.+   .-.|.+..+..++.+++++++..|-..+.-+.
T Consensus       995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmi---KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN---DMI---KVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhh---HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            4433     456899999999999999999999999885   222   24788999999999999999888876665555


Q ss_pred             Hhh
Q 039940          391 KVG  393 (449)
Q Consensus       391 ~~~  393 (449)
                      ..+
T Consensus      1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred             hcc
Confidence            544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.56  E-value=0.0053  Score=50.13  Aligned_cols=93  Identities=18%  Similarity=0.201  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940          205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL  284 (449)
Q Consensus       205 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  284 (449)
                      |+.++.+++.+++.++...+...+     ..++.+...|.++++.+|..|+.++..+...+--.    .+..++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            578899999999999977665444     56889999999999999999999999998653211    123344778888


Q ss_pred             hccCCchhHHHHHHHHHHHHhcC
Q 039940          285 LINNHKKSIKKESCWTVSNITAG  307 (449)
Q Consensus       285 l~~~~~~~v~~~a~~~l~nl~~~  307 (449)
                      +.++ +++++..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999864

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.012  Score=49.42  Aligned_cols=256  Identities=18%  Similarity=0.208  Sum_probs=148.6

Q ss_pred             HHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940           68 PRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV  146 (449)
Q Consensus        68 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  146 (449)
                      ..+.+.|.+.+ ...-+..|+..|.++...           +.+..+.+...+++.......+.+|+....         
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~---------   65 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQD---------   65 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhcc---------
Confidence            34444444422 123344555555555542           225666666666556666666777776532         


Q ss_pred             hhcCCHHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940          147 LHEEALIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND  225 (449)
Q Consensus       147 ~~~~~i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~  225 (449)
                        ...++.++..+.. +..+.++..|..+|..+...          ..++.+.+..+.+-..++..+..++..+-..+.-
T Consensus        66 --~~Av~~l~~vl~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   66 --EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             --chhhHHHHHHhcccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence              2356677777743 34567778888888887732          5666777777556666777666666554322110


Q ss_pred             HHH----HH--H------HhCcHHHHHH-hhCCCCCc-chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCch
Q 039940          226 KIQ----AV--I------EAGVCGPLVE-LLGHPSPS-VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK  291 (449)
Q Consensus       226 ~~~----~~--~------~~~~~~~L~~-ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  291 (449)
                      ...    ..  .      ..+-+..+-. +++.+.+. -|..|++.|.|+-.  +         ..+..+.+-+..+ +.
T Consensus       134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-Sa  201 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-SA  201 (289)
T ss_pred             ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-hH
Confidence            000    00  0      0001111111 22222222 23345555544422  1         1345566777777 88


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHh
Q 039940          292 SIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCD  369 (449)
Q Consensus       292 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~  369 (449)
                      -.|.+++++++.+-+  +.         .++.|...|.+.  ++-||..|+.||+.++.   ++         .++.|..
T Consensus       202 lfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~e  258 (289)
T KOG0567|consen  202 LFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLKE  258 (289)
T ss_pred             HHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHHH
Confidence            899999999999843  22         456666666554  88999999999999975   33         4566677


Q ss_pred             hccCCCHHHHHHHHHHHHHHH
Q 039940          370 LLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       370 ll~~~~~~~~~~~~~~l~~l~  390 (449)
                      .+.++++-+++.|.-+|..+-
T Consensus       259 ~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  259 YLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHHHH
Confidence            788888888888888876443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=0.027  Score=54.00  Aligned_cols=126  Identities=19%  Similarity=0.158  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC
Q 039940          167 MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP  246 (449)
Q Consensus       167 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~  246 (449)
                      +.+.+...+..+-..++  ....+.+.+..+++...+++..+|..++..|..+.....+.-+.+++ ++...+..-+.+.
T Consensus        62 Il~fla~fv~sl~q~d~--e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLDK--EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHhhhccCc--hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc
Confidence            44444444444443332  22255778888888888899999999999999988754443333444 6778888888899


Q ss_pred             CCcchhhHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHH
Q 039940          247 SPSVLIPALRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTV  301 (449)
Q Consensus       247 ~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  301 (449)
                      .+.||..|+.+|+.+=.. .++.      ..+...+..+++..++++||+.|...+
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~dee------~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDEE------CPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            999999999999998632 1221      245667888888776899999875433

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.51  E-value=0.0086  Score=58.07  Aligned_cols=240  Identities=15%  Similarity=0.086  Sum_probs=155.6

Q ss_pred             hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHccc
Q 039940          143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSD  221 (449)
Q Consensus       143 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~  221 (449)
                      +......|+...++.+. ....++.+..+..+|..   .. .-........++.+...+++.. ..-.-..+.++.|++.
T Consensus       497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~---~i-~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas  571 (748)
T KOG4151|consen  497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG---KI-DFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLAS  571 (748)
T ss_pred             cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh---hc-CCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccC
Confidence            33445678888888887 44455666666666661   11 1111112344555555554332 2223468889999998


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHhccCCchhHHHHHHHH
Q 039940          222 GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALLINNHKKSIKKESCWT  300 (449)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~  300 (449)
                      .+....+.+.+...++.+-.++..+++..+..++..+.||..+..-....+.+ ...++.....+... +......++.+
T Consensus       572 ~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~a  650 (748)
T KOG4151|consen  572 ISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAGA  650 (748)
T ss_pred             cchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcccc
Confidence            77766666888777777777888899999999999999999886666666666 45566666666665 77788888888


Q ss_pred             HHHHhcCCHHHHH-HHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 039940          301 VSNITAGNRKQIQ-AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV  379 (449)
Q Consensus       301 l~nl~~~~~~~~~-~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~  379 (449)
                      +..++......+. ..--......+..++.++++.++........|+... ..+....+.....+..+...-.-.....+
T Consensus       651 ~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~~~~~~~l~~~~~~~~a~~~  729 (748)
T KOG4151|consen  651 LAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFETEVMELLSGLQKLNRAPKR  729 (748)
T ss_pred             ccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhccchHHHHHHHHHHhhhhhhh
Confidence            8866653333333 222245788899999999999999999999995554 55666666665566655555443333344


Q ss_pred             HHHHHHHHHH
Q 039940          380 TVCLKGLENI  389 (449)
Q Consensus       380 ~~~~~~l~~l  389 (449)
                      ..+..+|...
T Consensus       730 ~~~~~~l~~a  739 (748)
T KOG4151|consen  730 EDAAPCLSAA  739 (748)
T ss_pred             hhhhhHHHHH
Confidence            4444444433

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.48  E-value=0.00038  Score=41.04  Aligned_cols=38  Identities=34%  Similarity=0.670  Sum_probs=34.3

Q ss_pred             hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940          267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  305 (449)
                      +....+.+.|+++.|++++.++ +++++..++|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence            3566788999999999999988 9999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.48  E-value=0.0071  Score=49.41  Aligned_cols=92  Identities=16%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC-HHHHHHH
Q 039940           80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA-LIPLLAQ  158 (449)
Q Consensus        80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~~l~~~  158 (449)
                      +.++..++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|.+|...+..     .-.|. +..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence            68899999999999985554433     3479999999999999999999999999765422     12233 3677777


Q ss_pred             HcccccHHHHHHHHHHHHHhhcCC
Q 039940          159 LNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       159 l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            7 8899999999999999998873

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.46  E-value=0.026  Score=53.78  Aligned_cols=295  Identities=13%  Similarity=0.091  Sum_probs=151.2

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940           69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH  148 (449)
Q Consensus        69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  148 (449)
                      .++...+ ++ ...+..|+..+.......|+..+.     ++..++.+..+++..+|.+|+..|..+|.++++....+. 
T Consensus        27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-   98 (556)
T PF05918_consen   27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-   98 (556)
T ss_dssp             HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-
T ss_pred             HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-
Confidence            3444445 34 689999999999999988887664     478999999999999999999999999999877655543 


Q ss_pred             cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHccc-CCh
Q 039940          149 EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH---LDDEEVLRNVCWTLSNLSD-GTN  224 (449)
Q Consensus       149 ~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~-~~~  224 (449)
                          ..|..+| ...++.-...+-.+|..+...++       .+.+..+...+.   +.+..+++.++..|..-.. -..
T Consensus        99 ----DvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~  166 (556)
T PF05918_consen   99 ----DVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP  166 (556)
T ss_dssp             ----HHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred             ----HHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence                3677777 66666666666667766666543       345555555554   5678889998877743221 111


Q ss_pred             hHHH--HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc----CChhhHHHHHhcCCHHHHHHHh------ccCCchh
Q 039940          225 DKIQ--AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT----GDDFQTQCVINHGAVPYLLALL------INNHKKS  292 (449)
Q Consensus       225 ~~~~--~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~~  292 (449)
                      +...  .=.+.-++..+...|.+-..+--...+.+|..+-.    ......+.+     ++.+.+..      ... |++
T Consensus       167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e  240 (556)
T PF05918_consen  167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE  240 (556)
T ss_dssp             TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence            1111  11222344555566655332223334444544433    122222222     23333222      112 444


Q ss_pred             HHHHHHHHHHH----Hhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH
Q 039940          293 IKKESCWTVSN----ITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP  366 (449)
Q Consensus       293 v~~~a~~~l~n----l~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~  366 (449)
                      .......++..    +..  ++.....++.+ .++|.+-.+    ..+.+...+.++..++..+.......+++ -+...
T Consensus       241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~  314 (556)
T PF05918_consen  241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL  314 (556)
T ss_dssp             HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence            44333333332    222  34445544444 577766555    45777788888888888754333333221 12333


Q ss_pred             HHhhccC--CCH----HHHHHHHHHHHHHHHhhhh
Q 039940          367 LCDLLLC--ADP----EIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       367 L~~ll~~--~~~----~~~~~~~~~l~~l~~~~~~  395 (449)
                      |...+-.  ..+    ..++..+.++..|.+..++
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            3333322  222    3466777777777766554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.45  E-value=0.048  Score=49.03  Aligned_cols=201  Identities=12%  Similarity=0.080  Sum_probs=145.6

Q ss_pred             HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh-----HHHHHh--cCCHHHHHHHhccCCchhHHHHHHHH
Q 039940          228 QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-----TQCVIN--HGAVPYLLALLINNHKKSIKKESCWT  300 (449)
Q Consensus       228 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a~~~  300 (449)
                      ..+...+++..|+..|..-+-+.+..+..+++++.+.....     .+.+..  ..++..|+..-+   ++++-..+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence            44667799999999999999999999999999998764322     223322  234444444444   45666677777


Q ss_pred             HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHc---CChHHHHhhccCCCHH
Q 039940          301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVRE---GCIKPLCDLLLCADPE  377 (449)
Q Consensus       301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~  377 (449)
                      |..++.+ +.....++....+..+.+....++.++...|..++..+... .+.....++..   ..+.....++.+++.-
T Consensus       147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            7777664 56677888888999999999999999999999999998886 45555555543   3577888899999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940          378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET  443 (449)
Q Consensus       378 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~  443 (449)
                      ++..++..|..++....+..          .....+.+..-++.+..|..+++..|+-.|-.+..-
T Consensus       225 tkrqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv  280 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV  280 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred             eehhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence            99999999999998776543          224455555678888999999999999888777653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.42  E-value=0.0034  Score=44.98  Aligned_cols=89  Identities=19%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHh
Q 039940          336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEG  415 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (449)
                      |..++.+|..++..-.....+++-  ..+++++.++.++|+.+|..|+++|+++.+.....-            ...|  
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~------------l~~f--   66 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI------------LPYF--   66 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHH--
Confidence            566778888877764444333333  389999999999999999999999999998875421            2222  


Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHH
Q 039940          416 AEGFKKIEDLKSHGNNGIREKAVTI  440 (449)
Q Consensus       416 ~~~~~~l~~l~~~~~~~i~~~a~~~  440 (449)
                      ...++.|-.+..+++++|+..|..+
T Consensus        67 ~~IF~~L~kl~~D~d~~Vr~~a~~L   91 (97)
T PF12755_consen   67 NEIFDALCKLSADPDENVRSAAELL   91 (97)
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHH
Confidence            2346889999999999999887443

>PRK14707 hypothetical protein; Provisional

Probab=97.41  E-value=0.29  Score=53.24  Aligned_cols=394  Identities=14%  Similarity=0.078  Sum_probs=216.3

Q ss_pred             cHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           23 ILPAMVAGVW--SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        23 ~i~~l~~~l~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .+.-+++.++  .++...+..+...-..+++.  ......+-..|+-..|-.+-+=+++++.+..+...-..++. .+..
T Consensus       164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        164 NISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            3556666665  36677777666555555443  33344444445444444444545545666555554455555 4444


Q ss_pred             hHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          101 TKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      +..+-..| +-..+..|.. ++.....++...+..=....+..++.+ ....+...++-|.+-++..+-..+...+..=.
T Consensus       241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            44444344 5555555554 555455555555443333444544443 33345556666767777777776666555433


Q ss_pred             cCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHH-HcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLS-NLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALR  256 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~  256 (449)
                      .+++..........+...++.|. =+|..+...+..+|. .++ .+++..+.+- ..++...+.-+.. ++..+...+..
T Consensus       319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~  396 (2710)
T PRK14707        319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLV-ADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAAS  396 (2710)
T ss_pred             hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHH
Confidence            33333222222333333344443 345555555554444 444 3443333333 3334444454444 77777777777


Q ss_pred             HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940          257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK  336 (449)
Q Consensus       257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~  336 (449)
                      .|..-..++.+..+ -++...+...+.-|+.-++..+...++..|..-..++.+..+.+--.++...|-.+-+-++..+.
T Consensus       397 ~LA~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c  475 (2710)
T PRK14707        397 ALAEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC  475 (2710)
T ss_pred             HHHHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence            77665555455444 44555666666666655488888888888887777777766555444444444444455677888


Q ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHh
Q 039940          337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE-IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEG  415 (449)
Q Consensus       337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (449)
                      ..++..|..=..+ +++.++.|--.++...|-.+-+.+|.. ....+.++-..+....              .....|..
T Consensus       476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~--------------~l~~~~~~  540 (2710)
T PRK14707        476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL--------------QLRKAFDA  540 (2710)
T ss_pred             HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch--------------hhhhhhhh
Confidence            7888777766555 566777776666777777777777754 3344444444444211              12344444


Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHH
Q 039940          416 AEGFKKIEDLKSHGNNGIREKAVT  439 (449)
Q Consensus       416 ~~~~~~l~~l~~~~~~~i~~~a~~  439 (449)
                      .+....+..+-.+++....+.+..
T Consensus       541 ~~~~~~lnalSKwp~s~~C~~A~~  564 (2710)
T PRK14707        541 HQVVNTLKALSKWPDKQLCAVAAS  564 (2710)
T ss_pred             HHHHHHHHhhhcCCchhHHHHHHH
Confidence            455555666655555554444443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.37  E-value=0.0075  Score=46.98  Aligned_cols=127  Identities=10%  Similarity=0.145  Sum_probs=97.4

Q ss_pred             HHHHHhcCCHHHHHHHhccCCc-----hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHH
Q 039940          269 TQCVINHGAVPYLLALLINNHK-----KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAW  341 (449)
Q Consensus       269 ~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~  341 (449)
                      ..+++..+++..|+++++++..     ..+...+..++..+..+.--.. ..++..++..+....+..  +..+.+.|+.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4568889999999999988732     3556667777777766542222 333445677777777654  6899999999


Q ss_pred             HHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940          342 AISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       342 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  397 (449)
                      .|-+++.+ ++.....+.++=-++.|+..++..+++++..++..+..++...+..+
T Consensus        83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence            99999996 56666776666679999999999999999999999999998876643

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.37  E-value=0.0021  Score=45.97  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--CchhHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940          293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD--AEFDIKKEAAWAISNATKAGTQEQIKYLV  359 (449)
Q Consensus       293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~  359 (449)
                      .|......++|++..++.....+.+.|+++.+++...-  .+|-+++.|.+|+.|++.. +++..+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~-n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG-NPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC-CHHHHHHHH
Confidence            46778899999999999999999999999999998644  4899999999999999997 566555443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.36  E-value=0.07  Score=45.00  Aligned_cols=254  Identities=16%  Similarity=0.204  Sum_probs=155.3

Q ss_pred             hHHHHHhhCCCC--hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940          110 VPIFVKLLASPS--DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF  187 (449)
Q Consensus       110 i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  187 (449)
                      +..+.+.|.+.+  ..-+-.++..|.++....           .+..+.+.. .+.+......+++++......      
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~-----------~i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPA-----------AIKAITKAF-IDDSALLKHELAYVLGQMQDE------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCChH-----------HHHHHHHhc-ccchhhhccchhhhhhhhccc------
Confidence            455666665533  233445555555553221           244555555 333445556677777766554      


Q ss_pred             hhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 039940          188 DQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD  265 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  265 (449)
                          ..+|.++..+...  .+-+|..+..+++.+..  +         +..+.+-+..+++...+++.+..++..+-..+
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~  131 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKD  131 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence                6788888888754  57788899999988762  1         34566666777788888888777776664321


Q ss_pred             hhhH----HHH--------HhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc
Q 039940          266 DFQT----QCV--------INHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE  332 (449)
Q Consensus       266 ~~~~----~~~--------~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  332 (449)
                      .-..    ...        ...+-+..+-..+.+.. ..--|..|.+.|.|+  +.++.         +..+.+-+..++
T Consensus       132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Eea---------I~al~~~l~~~S  200 (289)
T KOG0567|consen  132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEEA---------INALIDGLADDS  200 (289)
T ss_pred             ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHHH---------HHHHHHhcccch
Confidence            1100    000        01122444444443331 223456778888887  33443         335555677778


Q ss_pred             hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHH
Q 039940          333 FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL--CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYA  410 (449)
Q Consensus       333 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  410 (449)
                      .-.|..++++++.+-+..            .++.|...|.  .+++-+|..|.++|..+..-                  
T Consensus       201 alfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------------  250 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------------  250 (289)
T ss_pred             HHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------------
Confidence            899999999999997632            3555555554  35778999999999866532                  


Q ss_pred             HHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940          411 RLVEGAEGFKKIEDLKSHGNNGIREKAVTILET  443 (449)
Q Consensus       411 ~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~  443 (449)
                            ..++.|+.+..++.+-|++.+...++-
T Consensus       251 ------~~~~vL~e~~~D~~~vv~esc~valdm  277 (289)
T KOG0567|consen  251 ------DCVEVLKEYLGDEERVVRESCEVALDM  277 (289)
T ss_pred             ------HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                  124567777777888888887777663

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.33  E-value=0.022  Score=47.25  Aligned_cols=142  Identities=15%  Similarity=0.154  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHhcC-CChhhhHHHHhCCChHHH
Q 039940           39 QLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----EDYPRLQFEAAWVLTNIAS-GTSVNTKVLIDHGAVPIF  113 (449)
Q Consensus        39 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L  113 (449)
                      ..+|+..|.-++++  .+.+..+.+..+--.+-.+|..    ...+.++..++.+++.+.. ++.+....+...+++|..
T Consensus        96 VcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   96 VCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             HHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            34566666666665  5777777777765555555543    2346789999999999997 556667778888999999


Q ss_pred             HHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH-------hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          114 VKLLASPSDDVREQAVWALGNIVAHSPGCRNLV-------LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       114 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-------~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      ++.+..+++.-+.-|..++..+..++....-..       .-...+..++..+.+.++..+..+++++..+|+.+.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999987664321111       111234444555556778888999999999998875

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.30  E-value=0.12  Score=46.28  Aligned_cols=195  Identities=10%  Similarity=0.090  Sum_probs=122.5

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH--HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC--ChhhHHH
Q 039940          196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI--EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG--DDFQTQC  271 (449)
Q Consensus       196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~~  271 (449)
                      -.+..+.......|..++..+.++...... .+.+.  ...+++.+...++.+..+-+..|+.+++-++-.  .......
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            344444556688899999888887754431 12121  124677888888887766666677777666533  2233344


Q ss_pred             HHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHH--Hhhc----------CchhH
Q 039940          272 VINHGAVPYLLALLINNH-KKSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVN--LLQD----------AEFDI  335 (449)
Q Consensus       272 ~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~--ll~~----------~~~~v  335 (449)
                      +++ .+.+.|...+.++. ...+|..++.+|+-++.   ..++......+  .+..+..  ..+.          +++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            443 47788888887662 34566666667766653   33333332222  2231111  1111          13568


Q ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      ...|+.+.+-++...+........+ ..++.|..+|++.|.++|..|-++|.-+++....
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8888888888877655544444333 3689999999999999999999999989887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.30  E-value=0.0042  Score=60.93  Aligned_cols=155  Identities=18%  Similarity=0.208  Sum_probs=114.5

Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH--hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940          190 VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE--AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       190 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  267 (449)
                      ...++|.++....+.+...+..-+.+|.++..+-|..  .+..  ..++|.|++.|.-++..++..++.++.-+....+.
T Consensus       865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence            3678899999988777778888888888888766642  2222  26788999999999999999999999888766544


Q ss_pred             hHHHHHhcCCHHHHHHHhccCCc---hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH
Q 039940          268 QTQCVINHGAVPYLLALLINNHK---KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS  344 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~~~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~  344 (449)
                      ....-. ..++|.+..+=++. +   ..||..|..++..+.+.-|...-...+..++..|...|.++..-+|++|..+=.
T Consensus       943 L~t~~~-~Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  943 LQTEHL-STLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             cchHHH-hHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            333222 34677777776665 4   579999999999999844443333344568888999999998999999987755


Q ss_pred             Hhhc
Q 039940          345 NATK  348 (449)
Q Consensus       345 ~l~~  348 (449)
                      +...
T Consensus      1021 ~W~~ 1024 (1030)
T KOG1967|consen 1021 NWYM 1024 (1030)
T ss_pred             hhhh
Confidence            5443

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.27  E-value=0.0026  Score=62.36  Aligned_cols=191  Identities=17%  Similarity=0.122  Sum_probs=130.2

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc-------------hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940          109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPG-------------CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL  175 (449)
Q Consensus       109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-------------~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l  175 (449)
                      +...++.+|+.  +++-..+..++.-+..+++.             +++.+. ...+|.++... ...+...+.....+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence            34556666664  33444455555555544432             222221 34677777777 355666777888888


Q ss_pred             HHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC---Ccch
Q 039940          176 SNLCKGKPQPP-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS---PSVL  251 (449)
Q Consensus       176 ~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~  251 (449)
                      +++..+-|... .......+|.|++.|.-+|..++..++.++.-+....+.....-++ .++|.++.+-.+++   ..+|
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence            88888655432 2234788899999999999999999999998877555433332222 46777777766655   4589


Q ss_pred             hhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940          252 IPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       252 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  305 (449)
                      ..|+.++..+.+.-+...-......++..|.+.|.++ ...+|++|..+=.+..
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence            9999999999985555444445667899999999998 8889999987765543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.25  E-value=0.088  Score=48.46  Aligned_cols=192  Identities=13%  Similarity=0.107  Sum_probs=118.2

Q ss_pred             HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhh-cCCHHHHHHHHccc
Q 039940           85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLH-EEALIPLLAQLNEH  162 (449)
Q Consensus        85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~-~~~i~~l~~~l~~~  162 (449)
                      .|+++|-.+....+.....+.+.+++..++..+..+-....+.  .-...-.... ++.+..... ..+         ..
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i---------~~   71 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSI---------SY   71 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccccccc---------CH
Confidence            4777788888777778888899999999999886322221111  0000000111 111111100 000         00


Q ss_pred             ccHHHHHHHHHHHHHhhc-CC-CCCC--hhhh-hchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCChhHHHHHHHhC
Q 039940          163 ARLSMLRIGTWTLSNLCK-GK-PQPP--FDQV-RPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGTNDKIQAVIEAG  234 (449)
Q Consensus       163 ~~~~~~~~a~~~l~~l~~-~~-~~~~--~~~~-~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  234 (449)
                      ......+..+.++..+.. .. ....  -... ..++..|...+.+.   .+.+...++..+..+..+.|.....+.+.|
T Consensus        72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G  151 (379)
T PF06025_consen   72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG  151 (379)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence            112233444444555555 22 1111  1112 35556666777654   488899999999999999998888899999


Q ss_pred             cHHHHHHhhC-C---CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC
Q 039940          235 VCGPLVELLG-H---PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN  288 (449)
Q Consensus       235 ~~~~L~~ll~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  288 (449)
                      +.+.++..+. .   ++.++....-.+++.+|-+ ....+.+.+.+.++.+++++.++
T Consensus       152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence            9999999888 4   3445555566677777775 56667788899999999999876

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=0.0052  Score=59.53  Aligned_cols=233  Identities=15%  Similarity=0.059  Sum_probs=150.5

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      +.|++..++++..-..+...+.+..+|..-...++...      ..+++.+...+.......-...++.+++|+++.+..
T Consensus       502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s  575 (748)
T KOG4151|consen  502 KPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISES  575 (748)
T ss_pred             cccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchh
Confidence            45777777777777777777777777762223321211      233555555555443233346789999999998888


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      .+..+.+.-.++.+-.++..+++..+..++..+.||.....-+...+.+...=.++........++.....++.++..++
T Consensus       576 ~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~  655 (748)
T KOG4151|consen  576 DRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAIT  655 (748)
T ss_pred             hHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchh
Confidence            88888888788888888888999999999999999987665555555553332334443334566666666666666555


Q ss_pred             cCCCCCC--hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          180 KGKPQPP--FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       180 ~~~~~~~--~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      ....+..  ..........+..++.+.+++++...+.++.|+.....+....+++...++.+...-.......+..+..+
T Consensus       656 sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~  735 (748)
T KOG4151|consen  656 SVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPC  735 (748)
T ss_pred             hcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhH
Confidence            4442222  33445667788888999999999999998888665555555556555555555444333333334444433


Q ss_pred             H
Q 039940          258 V  258 (449)
Q Consensus       258 l  258 (449)
                      |
T Consensus       736 l  736 (748)
T KOG4151|consen  736 L  736 (748)
T ss_pred             H
Confidence            3

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.22  E-value=0.017  Score=48.82  Aligned_cols=141  Identities=14%  Similarity=0.164  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHhcC-CChhhhHHHHhCCChHHHH
Q 039940           40 LEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED----YPRLQFEAAWVLTNIAS-GTSVNTKVLIDHGAVPIFV  114 (449)
Q Consensus        40 ~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~  114 (449)
                      ..|+..|..++++  .+.+..++++.+.-.|..+|+..+    .+.++..++.+++.+.. ++++....+.+.+++|..+
T Consensus        68 cnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   68 CNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            3556666667764  688888999988777777776543    25788899999999997 5678888899999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHHhcCCCch-------hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          115 KLLASPSDDVREQAVWALGNIVAHSPGC-------RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       115 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      ..|+.+++-.+.-|..++.++..++...       ..+..-..++..++..+.+.+++.+.++..+|...|+.+.
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            9999999999999999998886554221       1122223345566666667788999999999999999985

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=97.21  E-value=0.22  Score=47.65  Aligned_cols=266  Identities=11%  Similarity=0.061  Sum_probs=149.4

Q ss_pred             hcHHHHHHHhc----C-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940           22 EILPAMVAGVW----S-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG   96 (449)
Q Consensus        22 ~~i~~l~~~l~----s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~   96 (449)
                      ..++.++..-+    . ...+.|..+...|..++.+.. .... ...    ..+.+.+..+..++.-..-+.+|..++.+
T Consensus        24 ~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-~~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~   97 (464)
T PF11864_consen   24 SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-SSSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDN   97 (464)
T ss_pred             hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-cccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcC
Confidence            34444544443    2 345677788888887776542 1111 111    12333334332233333444555555553


Q ss_pred             ChhhhHHHHhCCChHHHHHhhCC---------------------------CChHHHHHHHHHHHHHhcCCCchhhhHhhc
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLAS---------------------------PSDDVREQAVWALGNIVAHSPGCRNLVLHE  149 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~---------------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  149 (449)
                      ..+.  ...+.++.+.|...+..                           .+.......+..+.|+...+...-+.-.-.
T Consensus        98 Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~  175 (464)
T PF11864_consen   98 GRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEIS  175 (464)
T ss_pred             CcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence            2222  22455677777766631                           123334455666677765543322222224


Q ss_pred             CCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHH
Q 039940          150 EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQA  229 (449)
Q Consensus       150 ~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  229 (449)
                      +.+..++....+..++...+.++.++..+..+. ..+......++..|.......  +....+-.++.||+......   
T Consensus       176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~---  249 (464)
T PF11864_consen  176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH---  249 (464)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH---
Confidence            556666767656666666788888888877765 233444456666666664333  66667777888888654322   


Q ss_pred             HHHhCcHHHHHHhhCCC------CCcchhhHHHHHHHhhcCChhhHH-HHHhc--CCHHHHHHHhccCCchhHHHHHHHH
Q 039940          230 VIEAGVCGPLVELLGHP------SPSVLIPALRTVGNIVTGDDFQTQ-CVINH--GAVPYLLALLINNHKKSIKKESCWT  300 (449)
Q Consensus       230 ~~~~~~~~~L~~ll~~~------~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~  300 (449)
                          ..+..|..+|..+      +..+..-|+..+..+..+..+... .+--.  -+++.+...++.+ ++.+-.+....
T Consensus       250 ----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~  324 (464)
T PF11864_consen  250 ----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLL  324 (464)
T ss_pred             ----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHH
Confidence                2356677777332      334556788888888766522211 11112  2788888888888 77777788888


Q ss_pred             HHHHhc
Q 039940          301 VSNITA  306 (449)
Q Consensus       301 l~nl~~  306 (449)
                      +.++..
T Consensus       325 i~~ll~  330 (464)
T PF11864_consen  325 INRLLD  330 (464)
T ss_pred             HHHHHh
Confidence            888763

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.031  Score=54.76  Aligned_cols=222  Identities=11%  Similarity=0.047  Sum_probs=142.7

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940          161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV  240 (449)
Q Consensus       161 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~  240 (449)
                      .++.+.++.+++..+..+.............+++......+.+.|+-+--+++..+..+|.-.+        ..+++.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHH
Confidence            4555678999999999999976555666668999999999999999999999998888875433        35566666


Q ss_pred             Hh-hCC---CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 039940          241 EL-LGH---PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI  316 (449)
Q Consensus       241 ~l-l~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~  316 (449)
                      .. ...   ..++.+..+-.++.+++..-.+....... .++...+....++ +...|..++..+++++....-......
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            63 222   22355555567777776543333332222 4666777777877 888999999999999863221111111


Q ss_pred             HCCChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHH--HHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHh
Q 039940          317 DAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYL--VREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKV  392 (449)
Q Consensus       317 ~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~  392 (449)
                       ..++..++.+... +++.+|+.|...+..+..+.+.+....+  ...+..+.+..+.... ++.++..+..++..+-..
T Consensus       887 -~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~  965 (982)
T KOG4653|consen  887 -HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA  965 (982)
T ss_pred             -HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence             1245556665544 4789999999999999887543333221  1233455555555544 444555555555544443


Q ss_pred             h
Q 039940          393 G  393 (449)
Q Consensus       393 ~  393 (449)
                      -
T Consensus       966 l  966 (982)
T KOG4653|consen  966 L  966 (982)
T ss_pred             H
Confidence            3

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.018  Score=56.33  Aligned_cols=231  Identities=14%  Similarity=0.130  Sum_probs=149.4

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~   97 (449)
                      ..+.+.+...+..+.++...++-.|+..|+.++..  ......+...+++...++.+++.+ +-+-..|+..+..+|...
T Consensus       723 s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy  799 (982)
T KOG4653|consen  723 SVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVY  799 (982)
T ss_pred             cccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhc
Confidence            34455567777777888899999999999999864  355666677899999999999999 788888999888888743


Q ss_pred             hhhhHHHHhCCChHHHHHh-hCCCC---hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940           98 SVNTKVLIDHGAVPIFVKL-LASPS---DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW  173 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~~-l~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  173 (449)
                      +        ..++|.+.+. .+..+   .+.+-..-.++.++.....+....- ..-.+..++... .+++...+..++.
T Consensus       800 ~--------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gv-repd~~~RaSS~a  869 (982)
T KOG4653|consen  800 P--------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGV-REPDHEFRASSLA  869 (982)
T ss_pred             c--------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhc-CCchHHHHHhHHH
Confidence            3        3567888873 43211   2333334467777664332221111 112344555555 4677888999999


Q ss_pred             HHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHH---hCcHHHHHHhhCCC-CC
Q 039940          174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIE---AGVCGPLVELLGHP-SP  248 (449)
Q Consensus       174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~L~~ll~~~-~~  248 (449)
                      .++++|.--...-......++..++.+...+ ..-+|++|+..+..+..+.....-.+..   .+....+...+... +.
T Consensus       870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd  949 (982)
T KOG4653|consen  870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD  949 (982)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            9999997654333345566667777777655 5788999999998887665432222221   13334444444443 34


Q ss_pred             cchhhHHHHHHHh
Q 039940          249 SVLIPALRTVGNI  261 (449)
Q Consensus       249 ~v~~~a~~~l~~l  261 (449)
                      .++..|+.++-.+
T Consensus       950 ~~klhaql~leei  962 (982)
T KOG4653|consen  950 GLKLHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHHHHHHH
Confidence            4566666666433

>PRK14707 hypothetical protein; Provisional

Probab=97.14  E-value=0.58  Score=51.20  Aligned_cols=400  Identities=15%  Similarity=0.096  Sum_probs=212.3

Q ss_pred             hhhcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH-HhcCC
Q 039940           20 KLEILPAMVAGVWS--DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT-NIASG   96 (449)
Q Consensus        20 ~~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~-~l~~~   96 (449)
                      ..++|-.+++.+.+  +++..+..+. .|...+... ......+-..|+-..|-.+.+=++ .....+|+..+. .++. 
T Consensus       203 ~~q~ia~~lNa~sKWp~~~~c~~aa~-~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~-~~~C~~a~~~lA~rl~~-  278 (2710)
T PRK14707        203 DAQGVATVLNALCKWPDTPDCGNAVS-ALAERLADE-SRLRNELKPQELGNALNALSKWAD-TPVCAAAASALAERLVD-  278 (2710)
T ss_pred             chHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhh-
Confidence            34667777888764  5666665544 444433332 333445555565555555666666 344455555554 4443 


Q ss_pred             ChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL  175 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l  175 (449)
                      .+.-++.+-..+ +...+..|+. ++..+...+...|..=..+++..++.+ +...+...++.+.+-+|..+-+.+...|
T Consensus       279 ~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~L  356 (2710)
T PRK14707        279 DPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSAL  356 (2710)
T ss_pred             hHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence            555555554444 3444444443 666666666655555445566655444 3344566777776777766666666555


Q ss_pred             HHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhH
Q 039940          176 SNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA  254 (449)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a  254 (449)
                      ..=...++..........+..+++.+. =++..+...+...|..=..++.+..+.+-..|+-..|-.+-+=++..+...+
T Consensus       357 A~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~a  436 (2710)
T PRK14707        357 AERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQA  436 (2710)
T ss_pred             HHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHH
Confidence            543333333333333344444444443 3566666666666655444555555544444554444444444788888888


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940          255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD  334 (449)
Q Consensus       255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  334 (449)
                      ...|.--..++.+..+. ++..-+...+..++.-+|..+...|+..|..-..+.++..+.+--.++...|-.+-+-.+..
T Consensus       437 a~~lA~~la~d~~l~~~-~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~  515 (2710)
T PRK14707        437 VSALAGRLAHDTELCKA-LDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTP  515 (2710)
T ss_pred             HHHHHHHHhccHHHHhh-cChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcH
Confidence            88877666655554433 33333455555555544777887777777766666666554443334444444444444433


Q ss_pred             HH-HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHH
Q 039940          335 IK-KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV  413 (449)
Q Consensus       335 v~-~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  413 (449)
                      .. +.+.|.-..+..  .....+.|...++...+-.+-+..+......+...|...+.....             ....|
T Consensus       516 ~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~-------------~~~~L  580 (2710)
T PRK14707        516 ICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQ-------------LPKDL  580 (2710)
T ss_pred             HHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchh-------------hHHhh
Confidence            33 333344444443  223333333344444455555555555555555555554432221             24445


Q ss_pred             HhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 039940          414 EGAEGFKKIEDLKSHGNNGIREKAVTIL  441 (449)
Q Consensus       414 ~~~~~~~~l~~l~~~~~~~i~~~a~~~i  441 (449)
                      ...++-..+..|-..++..-...+...|
T Consensus       581 ~aq~Vs~llNaLSKWP~~~aC~~Aa~~L  608 (2710)
T PRK14707        581 HRQGVVIVLNALSKWPDTAVCAEAVNAL  608 (2710)
T ss_pred             hhhHHHHHHHhhccCCCcHHHHHHHHHH
Confidence            5555555666666666655544444433

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=97.13  E-value=0.0049  Score=48.99  Aligned_cols=144  Identities=15%  Similarity=0.180  Sum_probs=101.4

Q ss_pred             HHHHHhhC--CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 039940          237 GPLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQA  314 (449)
Q Consensus       237 ~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  314 (449)
                      +.++..+.  ...+++|..+.-++..+.   +...+ -....+-+.+-..+..+ +.+-...++.++..+..+.++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444443  456778999998888884   22222 22333455566666666 6677888999999998888887777


Q ss_pred             HH-HCCChHHHHHHhh--cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHH-HHHHHHHHHHH
Q 039940          315 VI-DAGLIVPLVNLLQ--DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPE-IVTVCLKGLEN  388 (449)
Q Consensus       315 l~-~~~~~~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~-~~~~~~~~l~~  388 (449)
                      +. ..|+++.+..+..  .++..++..++.+|..-+.  + +.++.++...+++.|...++ ++++. ++..|+-+|.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d-~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--D-KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--S-HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--c-HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            76 6799999999999  6788999999999888776  3 44455555668999999995 55555 67777666654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.05  E-value=0.12  Score=49.51  Aligned_cols=182  Identities=13%  Similarity=0.093  Sum_probs=114.1

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      ...+.+..++...+ ++......|+..+.++...- ....+     ..+..+++++.+.+ ..++.+|+..|-.+|.+++
T Consensus        20 ~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~~-----~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~   91 (556)
T PF05918_consen   20 QHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQE-----EAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNP   91 (556)
T ss_dssp             GGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHH-----HHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--
T ss_pred             cCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHH
Confidence            34456667777766 46888889999999997653 33333     34788999999999 8999999999999999888


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc--ccccHHHHHHHHHHHH
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN--EHARLSMLRIGTWTLS  176 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~l~  176 (449)
                      +....+     ..+|+++|.++++.-...+-.+|..+...+|.        +.+..++..+.  ...++.+++.++..|.
T Consensus        92 ~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   92 EHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            887766     58999999998877777777777777654432        34556666664  2567888999887775


Q ss_pred             HhhcCC-CCC---ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHccc
Q 039940          177 NLCKGK-PQP---PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSD  221 (449)
Q Consensus       177 ~l~~~~-~~~---~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~  221 (449)
                      .=...- +..   ..+...-++..+.+.|.+-..+-....+..|..+-.
T Consensus       159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            433332 111   133445566667777765333434445555555544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.03  E-value=0.071  Score=47.71  Aligned_cols=191  Identities=15%  Similarity=0.146  Sum_probs=116.1

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh--cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC--CCCC
Q 039940          110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH--EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG--KPQP  185 (449)
Q Consensus       110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~--~~~~  185 (449)
                      +.-.+..+...+...|+.++..+.++....... +.+..  ...+..+.+.+++. ..+-+..|+.++.-++-.  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCcc
Confidence            334444555567889999999999887655332 22221  12355566666433 334455666766666655  2344


Q ss_pred             ChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcc---cCChhHHHHHHHhCcHHHHH--HhhCC----------CCC
Q 039940          186 PFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLS---DGTNDKIQAVIEAGVCGPLV--ELLGH----------PSP  248 (449)
Q Consensus       186 ~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~~L~--~ll~~----------~~~  248 (449)
                      .........|.|.+.+...  ...++..++.||+-++   ...++.....+  ..++.+.  ...+.          +++
T Consensus       123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCcc
Confidence            5566688889999988765  3566667776666554   33332222111  1233221  22222          124


Q ss_pred             cchhhHHHHHHHhhcCChh-hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          249 SVLIPALRTVGNIVTGDDF-QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       249 ~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      .+...|+.+.+-+...-+. ...... ...++.|..+|.+. +..||..|..+|+-+..
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            5788888888887765444 222222 34689999999999 99999999999987754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.01  E-value=0.038  Score=49.43  Aligned_cols=111  Identities=14%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             CcHHH-HHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 039940          234 GVCGP-LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQ  311 (449)
Q Consensus       234 ~~~~~-L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~  311 (449)
                      ++++. +.+.++++++.+|..|+.|+|-.+--+.+...     ..++.+...++.+ +..++..|+.++..+.. +....
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            34443 44778899999999999999999877654433     2466788888777 89999999999999985 33222


Q ss_pred             HHHHH-------HCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          312 IQAVI-------DAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       312 ~~~l~-------~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                      .....       ...++..+...+.+.+++++..|+..++.+...+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            22222       2457788888999999999999999999998875

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=0.034  Score=56.46  Aligned_cols=147  Identities=15%  Similarity=0.151  Sum_probs=115.9

Q ss_pred             hhhchHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhc
Q 039940          189 QVRPVLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVT  263 (449)
Q Consensus       189 ~~~~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~  263 (449)
                      ....+.|.++...++    +||+++..|.-+++.+.--+....    + .-++.|+..|. ++++.+|.++.-+++.++.
T Consensus       916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----e-s~l~llftimeksp~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----H-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence            345677888888853    579999999999998875544322    2 34688888887 6889999999999999987


Q ss_pred             CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHH
Q 039940          264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL  343 (449)
                      ..+...+.     .-+.|...|.+. ++.+|+.|..+++++...+     .+--.|.+..+..++.+++..++..|-..+
T Consensus       991 ~fpnlie~-----~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen  991 RFPNLIEP-----WTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred             hcccccch-----hhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence            66655443     345688888888 9999999999999997643     333469999999999999999999999888


Q ss_pred             HHhhccCC
Q 039940          344 SNATKAGT  351 (449)
Q Consensus       344 ~~l~~~~~  351 (449)
                      ..+...++
T Consensus      1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred             HHhhhccc
Confidence            88877653

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.96  E-value=0.69  Score=48.93  Aligned_cols=397  Identities=11%  Similarity=0.030  Sum_probs=201.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      -+..++..+..+...+|..|+++|..+......-.....++.++...    +.++. ..++++|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            35667777787889999999999999986542222223333333333    34445 69999999999987775666554


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      .+.     ..+..-..+....+|..++.++..+|...|.+.....   +...++... .++...++.-++.++.++-..+
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv-~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence            443     4455555667889999999999999998887644331   222333333 3444558999999999998877


Q ss_pred             CCC--ChhhhhchHHHHHH-------hhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh---CcHHHHHHhhC------
Q 039940          183 PQP--PFDQVRPVLPALAQ-------LIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA---GVCGPLVELLG------  244 (449)
Q Consensus       183 ~~~--~~~~~~~~l~~l~~-------ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~ll~------  244 (449)
                      +..  .......-++..+.       +.....+.+....+..=...  ......+.+...   ..+..+..++.      
T Consensus       963 ~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~--~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev 1040 (1692)
T KOG1020|consen  963 VPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK--TMKESVKPVALAKVTHVLNLLTHCLVEKISEV 1040 (1692)
T ss_pred             CCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh--hhhhhhhHHHHhhcchHHHHHHHHHHHHHHhh
Confidence            322  22222222222111       11122222222222111100  000000101111   11222222221      


Q ss_pred             ------CCCCcchhh-HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC----CchhHHHHHHHHHHHHhc---CCHH
Q 039940          245 ------HPSPSVLIP-ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN----HKKSIKKESCWTVSNITA---GNRK  310 (449)
Q Consensus       245 ------~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~---~~~~  310 (449)
                            ....+++.. .+.+|.-++...+.    +.....+..|...|.+.    ....+..+.+..+-....   ..++
T Consensus      1041 ~~~~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~se 1116 (1692)
T KOG1020|consen 1041 ESDDMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSE 1116 (1692)
T ss_pred             hhHhhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchH
Confidence                  122233333 34445555544332    22223444455555443    123333334443333322   1111


Q ss_pred             HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc--CCHHHHHHHHHc--CChHHHHhhccCC----CHHHHHHH
Q 039940          311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA--GTQEQIKYLVRE--GCIKPLCDLLLCA----DPEIVTVC  382 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~--~~~~~L~~ll~~~----~~~~~~~~  382 (449)
                      .   ++ ..+=+.|+.++-.........|..|++.++..  .+....+.....  +.++.+-.-..++    +.......
T Consensus      1117 s---fL-~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rs 1192 (1692)
T KOG1020|consen 1117 S---FL-ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRS 1192 (1692)
T ss_pred             H---HH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Confidence            1   11 12334566666556666677777888888773  233333333321  2233322222222    22445667


Q ss_pred             HHHHHHHHHhhhhhhccCCCCCcccH-HHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          383 LKGLENILKVGEAKKNRGSTIGDVNQ-YARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       383 ~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      +.++.-++++++-.....+  +..+. +.. .-..+.+..|.-+..+.+.+++.+|..-+-.++-
T Consensus      1193 iftlG~l~Ryfdf~~~~~~--g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci 1254 (1692)
T KOG1020|consen 1193 IFTLGLLSRYFDFPKPSND--GKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFICI 1254 (1692)
T ss_pred             HHHHHHHHHhccCCCccCC--Cccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            7777777776544332211  11110 122 2234556777777778888889888887766543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.95  E-value=0.0044  Score=45.65  Aligned_cols=70  Identities=17%  Similarity=0.287  Sum_probs=58.3

Q ss_pred             ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 039940          363 CIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL  441 (449)
Q Consensus       363 ~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i  441 (449)
                      ++..|+.++. +.|+.+...|+.=|..+++..+..             ...+.+.|+.+.+..|+.|+|++|+..|...+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            5788889884 457888889999999999988764             56778999999999999999999999999999


Q ss_pred             HHhc
Q 039940          442 ETYW  445 (449)
Q Consensus       442 ~~~~  445 (449)
                      +++.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.88  E-value=0.082  Score=48.36  Aligned_cols=147  Identities=11%  Similarity=0.158  Sum_probs=104.4

Q ss_pred             CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHH-HHHHcccCChhHHHH
Q 039940          151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCW-TLSNLSDGTNDKIQA  229 (449)
Q Consensus       151 ~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~-~l~~l~~~~~~~~~~  229 (449)
                      .+..+++.+.++.++..+..|++.|..++...+.+-+...+-++..+++.-.+.++++...|.. |+..++...+...  
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--  407 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--  407 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence            4456777775668889999999999999999877777766777777777777777766665554 4445555555321  


Q ss_pred             HHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          230 VIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       230 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                            +..+..++.+.+......++..+..++..-+...-..+-..+.|.+++...+. +..||+.|.++|..+..
T Consensus       408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                  33444555556777777788888888765332211222357899999999999 89999999999998864

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.38  Score=44.57  Aligned_cols=161  Identities=14%  Similarity=0.120  Sum_probs=92.4

Q ss_pred             HHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchh
Q 039940          174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL-GHPSPSVLI  252 (449)
Q Consensus       174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~  252 (449)
                      .+..+.......+.......+..+..-..+++..++..++++|+|.+...++....... ..+..++.-| ...+.+|..
T Consensus       240 f~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~l  318 (533)
T KOG2032|consen  240 FFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQL  318 (533)
T ss_pred             HHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHH
Confidence            34444443322222333444445555555677899999999999999986665554433 3445555444 445688999


Q ss_pred             hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--C--CHHHHHHHHHCCChHHHHHHh
Q 039940          253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--G--NRKQIQAVIDAGLIVPLVNLL  328 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~--~~~~~~~l~~~~~~~~L~~ll  328 (449)
                      +++.+|..+...-....-..+-..+.-.+..+..+. ++++|..|...++.++.  +  -.+....-+..+..+.+ --+
T Consensus       319 eam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll-lhl  396 (533)
T KOG2032|consen  319 EAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL-LHL  396 (533)
T ss_pred             HHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce-eee
Confidence            999988777543111000111123455677778888 99999999888888774  2  22222222333344433 335


Q ss_pred             hcCchhHHH
Q 039940          329 QDAEFDIKK  337 (449)
Q Consensus       329 ~~~~~~v~~  337 (449)
                      .+.++.+..
T Consensus       397 ~d~~p~va~  405 (533)
T KOG2032|consen  397 QDPNPYVAR  405 (533)
T ss_pred             CCCChHHHH
Confidence            555655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.85  E-value=0.37  Score=48.31  Aligned_cols=176  Identities=16%  Similarity=0.203  Sum_probs=116.8

Q ss_pred             HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHhhcCc-h
Q 039940          257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR--KQIQAVIDAGLIVPLVNLLQDAE-F  333 (449)
Q Consensus       257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~--~~~~~l~~~~~~~~L~~ll~~~~-~  333 (449)
                      +++++...++.....+++.+++..+...++.-....++..+...++|++...+  +.......... ..+..++...+ .
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence            78888988999999999999999999999866567899999999999986332  21111111111 23333444433 3


Q ss_pred             hHHHHHHHHHHHhhccCCH--------HHHHHHHH--------------cCChHH-HHhhcc-CCCHHHHHHHHHHHHHH
Q 039940          334 DIKKEAAWAISNATKAGTQ--------EQIKYLVR--------------EGCIKP-LCDLLL-CADPEIVTVCLKGLENI  389 (449)
Q Consensus       334 ~v~~~a~~aL~~l~~~~~~--------~~~~~l~~--------------~~~~~~-L~~ll~-~~~~~~~~~~~~~l~~l  389 (449)
                      +.-..|+..|+.+...+++        .....+.+              ...+.. +..++. +..+..+.+|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            7788888888888876431        00111111              112333 444444 34667788999999999


Q ss_pred             HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHhcC
Q 039940          390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTILETYWL  446 (449)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i~~~~~  446 (449)
                      ++..++             +.....+.|++..+..+... ...++++.+..+++.+..
T Consensus       653 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  697 (699)
T KOG3665|consen  653 LEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCEN  697 (699)
T ss_pred             HHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcccc
Confidence            977654             46778888999888888322 366678888888877654

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.2  Score=46.22  Aligned_cols=268  Identities=13%  Similarity=0.123  Sum_probs=142.6

Q ss_pred             CCChHHHHHhh----CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          107 HGAVPIFVKLL----ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       107 ~~~i~~L~~~l----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      .|.+..++..+    .+++..++..|++.|+|.+..-|.-.. -.....+..++..|.++.+.+|+..++.+|..+....
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~-th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR-THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH-HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            35555554444    357789999999999999988554222 2233456667777767778999999999988877665


Q ss_pred             CCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHH-HHHH--hCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          183 PQPPFD-QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ-AVIE--AGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       183 ~~~~~~-~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      .+.... ..-++.-.+..+..+.+++.+.++...++.++.-.....+ .+.+  .+....++..+.++++.+ ..||+..
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~  410 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSE  410 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHH
Confidence            333322 2244555677788888999999988888777643221111 1221  022234444455555543 4567766


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHH---HHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKES---CWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI  335 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a---~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v  335 (449)
                      ...+..+-. .+..  .++++...    .. +.. +..+   -|++ .+....++....+..     ....++++.=+.+
T Consensus       411 ~~~c~p~l~-rke~--~~~~q~~l----d~-~~~-~~q~Fyn~~c~-~L~~i~~d~l~~~~t-----~~~~~f~sswe~v  475 (533)
T KOG2032|consen  411 LRTCYPNLV-RKEL--YHLFQESL----DT-DMA-RFQAFYNQWCI-QLNHIHPDILMLLLT-----EDQHIFSSSWEQV  475 (533)
T ss_pred             HHhcCchhH-HHHH--HHHHhhhh----HH-hHH-HHHHHHHHHHH-HHhhhCHHHHHHHHH-----hchhheecchHHH
Confidence            666543221 1111  11222111    11 110 1111   1111 121223332222221     1112233333355


Q ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940          336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK  391 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~  391 (449)
                      +..+..--.+...+-.+..+.+.-.......+-.+...+-++++..+..++..+..
T Consensus       476 r~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  476 REAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            55554444444444333333333333345666677778889999999999887654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.81  E-value=0.0018  Score=47.67  Aligned_cols=74  Identities=12%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          276 GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       276 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      .++..|+.+|..+.|+.+..-||.=|+.++..-|..+..+-+.|+=..+++++.+++++|+.+|+.|+..+...
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            46888999995544888889999999999987777776676789999999999999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.79  E-value=0.12  Score=46.37  Aligned_cols=172  Identities=15%  Similarity=0.122  Sum_probs=111.5

Q ss_pred             CCHHHHH-HhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-Cch
Q 039940           65 GIVPRFV-EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGC  142 (449)
Q Consensus        65 ~~i~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~  142 (449)
                      +++..++ ..+++.+ +.+++.|+.+|+-.|--+.+....     .++.+...++.++..++..|+.++..+.... ...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455554 5678888 899999999999999855543332     3677888887789999999999999887321 111


Q ss_pred             hhhH-------hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----CCCHHHHHH
Q 039940          143 RNLV-------LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH----LDDEEVLRN  211 (449)
Q Consensus       143 ~~~~-------~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----~~~~~~~~~  211 (449)
                      -+..       .....+..+.+.+ .+.+++++..++..+..|.-.+....   ...++..|+-+--    .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1111       1123455556666 56688999999999999887763333   1233333333322    234666666


Q ss_pred             HHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC
Q 039940          212 VCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS  247 (449)
Q Consensus       212 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~  247 (449)
                      .-..+-..+..++.+.. .+...+++.+..+.....
T Consensus       176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence            66677777776665544 555567777777766543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.77  E-value=0.092  Score=48.04  Aligned_cols=173  Identities=15%  Similarity=0.182  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHhcC-CChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHH
Q 039940           80 PRLQFEAAWVLTNIAS-GTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLA  157 (449)
Q Consensus        80 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~  157 (449)
                      .+-+..|+.-|..+.. ++-...+... ..++..+++.|.+ .+...+..|+++|..++..+|..-..- ..-++..+++
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Ds-tE~ai~K~Le  378 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDS-TEIAICKVLE  378 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhch-HHHHHHHHHH
Confidence            4666677775555544 3322233222 2456788888887 788999999999999998775421100 1123445555


Q ss_pred             HHcccccHHHHHHHH-HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHHHhCc
Q 039940          158 QLNEHARLSMLRIGT-WTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVIEAGV  235 (449)
Q Consensus       158 ~l~~~~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~  235 (449)
                      .- .+...++...|. .|+..++...|..       .+..+..++.+.|.+.-..++..+..++..-+ +....++ .++
T Consensus       379 aa-~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di  449 (516)
T KOG2956|consen  379 AA-KDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDI  449 (516)
T ss_pred             HH-hCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence            55 444455555554 4455666665543       33445556666777777777777777775533 2112222 278


Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940          236 CGPLVELLGHPSPSVLIPALRTVGNIVT  263 (449)
Q Consensus       236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~  263 (449)
                      .|.++..-.+.+..+|+.|++||..+..
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            8899999899999999999999977753

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.012  Score=54.84  Aligned_cols=104  Identities=17%  Similarity=0.191  Sum_probs=78.8

Q ss_pred             CcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 039940          234 GVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI  312 (449)
Q Consensus       234 ~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~  312 (449)
                      +++..++.. +++.+.++|..|..+|+-+|..+.         ..+...+++|..++++.||...+.+|+-.|.++-...
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~  621 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV  621 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence            556666666 667888999999999998887643         3566777888777689999999999998887553322


Q ss_pred             HHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHH
Q 039940          313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE  353 (449)
Q Consensus       313 ~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  353 (449)
                             .+..|-.++.+...-||+.|+.+++-+...++++
T Consensus       622 -------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         622 -------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             -------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence                   3445566677778889999999999888776554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.11  Score=50.36  Aligned_cols=133  Identities=18%  Similarity=0.171  Sum_probs=88.3

Q ss_pred             HHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          237 GPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL-INNHKKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       237 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                      +.+-.++.+.++-+|...+..++---.+..       ..+++..|+..- ++. +.+||+.|.-+|+-++..+++.    
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~----  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ----  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh----
Confidence            344455666677777776665532222211       234566677774 455 8999999999999998888763    


Q ss_pred             HHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          316 IDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       316 ~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                           .+..+.+|..+ ++.||..++.+|+-.+.+....-        ++..|..+..+...-||+.|+-++.-++-...
T Consensus       590 -----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  590 -----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             -----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence                 45556666554 99999999999998777532211        34445555666677789998888877765443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.64  Score=45.40  Aligned_cols=341  Identities=16%  Similarity=0.072  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHhcC--CChhhhHHHHhCCCh
Q 039940           40 LEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-------DYPRLQFEAAWVLTNIAS--GTSVNTKVLIDHGAV  110 (449)
Q Consensus        40 ~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i  110 (449)
                      ..|+..+..+.++.++   .  .-.|+++.++..+...       +...-.+-|++.++++..  ..+....-+++.=++
T Consensus       388 laal~fl~~~~sKrke---~--TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv  462 (970)
T COG5656         388 LAALFFLIISKSKRKE---E--TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV  462 (970)
T ss_pred             HHHHHHHHHHhcccch---h--hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            3455555555443211   1  1258899999988321       123445567777777665  223333334444456


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--Chh
Q 039940          111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFD  188 (449)
Q Consensus       111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~  188 (449)
                      +.++..++++.--++.+++..+..+..+   +++...-..+.....+++ ++.+-.++..|+.++..+..+....  -..
T Consensus       463 ~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sa  538 (970)
T COG5656         463 NHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSA  538 (970)
T ss_pred             HHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence            7777788888889999999999999443   222332334556667777 4567788888999998888876211  112


Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHH-cccC----ChhHHHHHHHhCcHHHHHHhhCCCC------CcchhhHHHH
Q 039940          189 QVRPVLPALAQLIHLDDEEVLRNVCWTLSN-LSDG----TNDKIQAVIEAGVCGPLVELLGHPS------PSVLIPALRT  257 (449)
Q Consensus       189 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~-l~~~----~~~~~~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~~  257 (449)
                      .+.+.++.++.+-+.-+.+....++..+.. .+..    .++....+.+ .++.....++..++      .+-...|.+.
T Consensus       539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi  617 (970)
T COG5656         539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI  617 (970)
T ss_pred             hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence            234555555555555566666555554432 2221    1111221221 23334444444331      1223334444


Q ss_pred             HHHhhc-----CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc
Q 039940          258 VGNIVT-----GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE  332 (449)
Q Consensus       258 l~~l~~-----~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  332 (449)
                      |.-+.+     .+....-.-......|.+--++++. -.++-.+|+-.+-+.+..+.+.-  -+.-|+.+.+.+++.+..
T Consensus       618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~  694 (970)
T COG5656         618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEI  694 (970)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccc
Confidence            433321     1111111112334555555566666 67788888888887765332211  112345666666666655


Q ss_pred             h-hHHHHHHHHHHHhhccCCHHHHHH-HHHcCChHHHHhhccCCCH--HHHHHHHHHHHHHHHhh
Q 039940          333 F-DIKKEAAWAISNATKAGTQEQIKY-LVREGCIKPLCDLLLCADP--EIVTVCLKGLENILKVG  393 (449)
Q Consensus       333 ~-~v~~~a~~aL~~l~~~~~~~~~~~-l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~~l~~~~  393 (449)
                      . ...+.++-++.|+...|..+..+. +.-.-..+.+...+.+++.  +=...+++++..++-..
T Consensus       695 t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~  759 (970)
T COG5656         695 TAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNI  759 (970)
T ss_pred             hhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHc
Confidence            3 677888999999998874433211 0001123344445555544  22445556665555433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.74  E-value=0.079  Score=44.98  Aligned_cols=194  Identities=13%  Similarity=0.069  Sum_probs=119.9

Q ss_pred             CCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHh-------ccCC-chhHHHHHHHHH---HHHhcCCHHHHHH
Q 039940          247 SPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALL-------INNH-KKSIKKESCWTV---SNITAGNRKQIQA  314 (449)
Q Consensus       247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll-------~~~~-~~~v~~~a~~~l---~nl~~~~~~~~~~  314 (449)
                      +++.|+.|+.-|+.--...++....+.. .|.+..|++=+       ..+. ....-...|.+|   ..+++ .|+.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            4455666666665554444444444443 34444443222       2210 122222333333   33434 4577788


Q ss_pred             HHHCCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940          315 VIDAGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI  389 (449)
Q Consensus       315 l~~~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l  389 (449)
                      +++..+.-.|...++..     -..+|-..+++++.++...+++...++.+.+.++...+.++.+++-.+..|..++.++
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99988887888877654     3578999999999999998999999999999999999999999888899999999999


Q ss_pred             HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      +..+...+.....   ...|.....-.  -..+..+...+++.+-+.+.....+..+
T Consensus       167 L~dd~GL~yiC~t---~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsd  218 (262)
T PF04078_consen  167 LLDDVGLNYICQT---AERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSD  218 (262)
T ss_dssp             HHSHHHHHHHTSS---HHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred             HcchhHHHHHhcC---HHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            9888776654432   12222222222  2445667888888887776666555443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.66  E-value=0.041  Score=51.45  Aligned_cols=255  Identities=11%  Similarity=0.067  Sum_probs=142.7

Q ss_pred             HHHHHHHhcCCChh-hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccccc
Q 039940           86 AAWVLTNIASGTSV-NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHAR  164 (449)
Q Consensus        86 a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~  164 (449)
                      +-..|..+....+. .....++...+..|+.++.++|+.-|+....+|.++-+.-+..|..+. ......+.+.+.....
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~  188 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETER  188 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCccc
Confidence            44455555442211 133345556788999999999999999999999998765555666553 3444556666655556


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh
Q 039940          165 LSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL  242 (449)
Q Consensus       165 ~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  242 (449)
                      ..-...++.+++.+..+...+- .....-....++.+...+. .........|+......++.....+     +..++..
T Consensus       189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~  263 (409)
T PF01603_consen  189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKH  263 (409)
T ss_dssp             -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHh
Confidence            6667778888888888764333 3333444456666666554 3345555566666655555433322     2233333


Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---C
Q 039940          243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---G  319 (449)
Q Consensus       243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~  319 (449)
                      =-..++.-...-+.-+..+...-+...-.-+...++..+...+++. +..|.+.|+....|     +... .++..   .
T Consensus       264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~~~~-~li~~~~~~  336 (409)
T PF01603_consen  264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN-----EYFL-SLISQNSRV  336 (409)
T ss_dssp             S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----HHHH-HHHHCTHHH
T ss_pred             CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----HHHH-HHHHhChHH
Confidence            2223333333344455555543222211122334677888888888 88888888665432     2222 22221   2


Q ss_pred             ChHHHHHHhhc----C-chhHHHHHHHHHHHhhccCCHHH
Q 039940          320 LIVPLVNLLQD----A-EFDIKKEAAWAISNATKAGTQEQ  354 (449)
Q Consensus       320 ~~~~L~~ll~~----~-~~~v~~~a~~aL~~l~~~~~~~~  354 (449)
                      ++|.+...+..    + +..++..|..++.-+... +++.
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~-d~~l  375 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM-DPKL  375 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT-SHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-CHHH
Confidence            56666666533    3 788999998888888775 4443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.65  E-value=0.056  Score=46.12  Aligned_cols=102  Identities=13%  Similarity=0.087  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940          293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL  371 (449)
Q Consensus       293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll  371 (449)
                      ....|...|.-++--.|.....+-+...+..+++++.. ..+.++..++.+|..+... ++.+.+.|.+.+++..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHH
Confidence            34456677777766455666677788999999999954 5789999999999999887 678888899999999999999


Q ss_pred             cCC--CHHHHHHHHHHHHHHHHhhhh
Q 039940          372 LCA--DPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       372 ~~~--~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +++  +.+++.++++.|+-++--...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E~~  211 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPETP  211 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcccCC
Confidence            875  678999999999877755443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.59  E-value=0.011  Score=56.30  Aligned_cols=144  Identities=15%  Similarity=0.107  Sum_probs=104.4

Q ss_pred             cHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940          235 VCGPLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       235 ~~~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  310 (449)
                      +-|.+.....+    .+++++..|.-+|..+.+-+.+...     .-+|.++..|+..++|.+|..|.-.++.++..-..
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            34444444444    5778888888888877655444332     36889999998444999999999999998764333


Q ss_pred             HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940          311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~  390 (449)
                      .+..     .-..|.+-|.+.+..||+.|..++.++...|.      +.-.|.+..+..++.++|.++...|--.+..+.
T Consensus       968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            3332     34578888999999999999999999988642      123577888888899999888887777777666


Q ss_pred             Hhhh
Q 039940          391 KVGE  394 (449)
Q Consensus       391 ~~~~  394 (449)
                      ..+.
T Consensus      1037 ~KdN 1040 (1128)
T COG5098        1037 KKDN 1040 (1128)
T ss_pred             hccc
Confidence            5543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.53  E-value=1.1  Score=45.39  Aligned_cols=210  Identities=16%  Similarity=0.191  Sum_probs=127.7

Q ss_pred             HhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---cccc----HHHHHHHH
Q 039940          105 IDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---EHAR----LSMLRIGT  172 (449)
Q Consensus       105 ~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~  172 (449)
                      .+.|++..++.++.+     .........+..|...+.- +.+|+.+.+.++++.++..+.   ....    .++.+..+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            346889999999875     3345555566666665544 678888889999999998885   2222    56666666


Q ss_pred             HHHHHhhcCCCCCChh-------------hhhchHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCc
Q 039940          173 WTLSNLCKGKPQPPFD-------------QVRPVLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGV  235 (449)
Q Consensus       173 ~~l~~l~~~~~~~~~~-------------~~~~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  235 (449)
                      .++-.+..........             ....-+..++..+.+    .++.+....++.|.+++.++++..+.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            6655554433111110             122335566666654    468999999999999999998887766653  


Q ss_pred             HHHHHHhhCCC--CCcchhhHHHHHHHhhcCC------hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 039940          236 CGPLVELLGHP--SPSVLIPALRTVGNIVTGD------DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG  307 (449)
Q Consensus       236 ~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  307 (449)
                      +...+++=.-+  ...--...+.+++.++.+-      ...++.+++.|++...+..+... -+..        .+.  .
T Consensus       271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~~--~  339 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KNT--D  339 (802)
T ss_pred             HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------ccC--C
Confidence            22222221111  1111123355566665432      34567778889999888888766 4433        111  3


Q ss_pred             CHHHHHHHHHCCChHHHHHHhh
Q 039940          308 NRKQIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       308 ~~~~~~~l~~~~~~~~L~~ll~  329 (449)
                      ++ .....+....+|..+++|.
T Consensus       340 s~-eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  340 SP-EWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             CH-HHHHHhcCCcHHHHHHHHH
Confidence            33 3445566677777777764

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.50  E-value=0.85  Score=46.16  Aligned_cols=237  Identities=15%  Similarity=0.164  Sum_probs=144.7

Q ss_pred             chHHHHHHhhcC-----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC----CCC----CcchhhHHHHH
Q 039940          192 PVLPALAQLIHL-----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG----HPS----PSVLIPALRTV  258 (449)
Q Consensus       192 ~~l~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~~----~~v~~~a~~~l  258 (449)
                      +++..++.++.+     .+.+....++..+...+.-. .+.+.+++.+.++.|+..+.    .+.    ..+.+..+.++
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii  195 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII  195 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence            677777777764     23456666667776666554 45566888999998888774    333    56666677666


Q ss_pred             HHhhcCChhh-HH---HHH--------hcCCHHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940          259 GNIVTGDDFQ-TQ---CVI--------NHGAVPYLLALLINNH---KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP  323 (449)
Q Consensus       259 ~~l~~~~~~~-~~---~~~--------~~~~l~~L~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  323 (449)
                      ..+....... ..   ...        ...-+..+++.+.++.   ++.+....+..|.+++.++++..+.+++  .+..
T Consensus       196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~p  273 (802)
T PF13764_consen  196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFKP  273 (802)
T ss_pred             HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHH
Confidence            6665331110 00   001        1112566666665441   5788899999999999999888877766  2222


Q ss_pred             HHHHhhc--C-chhHHHHHHHHHHHhhccC-----CHHHHHHHHHcCChHHHHhhccCC--------CHHH--------H
Q 039940          324 LVNLLQD--A-EFDIKKEAAWAISNATKAG-----TQEQIKYLVREGCIKPLCDLLLCA--------DPEI--------V  379 (449)
Q Consensus       324 L~~ll~~--~-~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~~~~L~~ll~~~--------~~~~--------~  379 (449)
                      .+++=..  . .++- ..-+.+++.++.+-     .....+.+++.|++...++++...        +++.        .
T Consensus       274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            2222111  1 1111 23356666666542     235567788899998888877432        2222        3


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHHHHHHHHHHHHhcC
Q 039940          380 TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       380 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      ..++..|.-++.....              .+.+...+++..+..| +.+....|-..|..+++..-+
T Consensus       353 p~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  353 PYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            4577777777765443              2333456678888888 555577888899888886543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.50  E-value=0.21  Score=48.31  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=79.3

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940           64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      .|.+..+++...+++ ..++..++.+|..+..... .++.-+-.++...+..-+.+..+.+|.+|+.+|..+-++...- 
T Consensus        84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence            466777777778888 7999999999999997333 3333444466777777777888999999999999995433211 


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS  176 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~  176 (449)
                          +..+...+...+..+++++|++.++..+.
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                33466778888888999999998875544

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.35  E-value=0.51  Score=39.57  Aligned_cols=139  Identities=9%  Similarity=0.138  Sum_probs=99.8

Q ss_pred             hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHH
Q 039940          253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN----NHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNL  327 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~l  327 (449)
                      .|+..+..++++ ++.+..++++.+--.+..+|..    .....+|-.+.++++.+.. ++.+.+..+...+++|..++.
T Consensus        98 naL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   98 NALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            344455555555 6677778887776666666643    2256799999999999997 666777888899999999999


Q ss_pred             hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH--------cCChHH-HHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR--------EGCIKP-LCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~~~~-L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      +..++...+..|...+..+...  .....++.+        ..++.. +..+.+.+++.+.+.++.+..++.....
T Consensus       177 me~GSelSKtvA~fIlqKIlld--D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  177 MESGSELSKTVATFILQKILLD--DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             HhcccHHHHHHHHHHHHHHhhc--cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999875  233333222        112232 3344566788888999988888876543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.34  E-value=0.026  Score=46.61  Aligned_cols=114  Identities=15%  Similarity=0.163  Sum_probs=79.1

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC--------CCCHHHHHHHHHHHH
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR--------EDYPRLQFEAAWVLT   91 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~~~~~~~~a~~~L~   91 (449)
                      .......+++.+++.....  ..+..|...+........+.+++.|++..|+++|..        ....+.+..++.|+.
T Consensus        64 ~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk  141 (187)
T PF06371_consen   64 AKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK  141 (187)
T ss_dssp             -CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence            3455667788887755432  334444444443323456788889999999998752        122578899999999


Q ss_pred             HhcCCChhhhHHHHh-CCChHHHHHhhCCCChHHHHHHHHHHHHHh
Q 039940           92 NIASGTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIV  136 (449)
Q Consensus        92 ~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~  136 (449)
                      .+.. +......++. .+++..++..|.+++..++..++.+|..+|
T Consensus       142 al~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  142 ALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9998 5555666665 589999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.32  E-value=1.9  Score=45.86  Aligned_cols=294  Identities=15%  Similarity=0.101  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc----ccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 039940          125 REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH----ARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQL  200 (449)
Q Consensus       125 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l  200 (449)
                      ...++.+|.-++...|..-    ....+..+-..|...    ....+..+.+.++....---++........+=..|.++
T Consensus      1054 ~~~~lstL~~FskirP~Ll----t~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1054 LLAYLSTLFVFSKIRPQLL----TKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred             HHHHHHHHHHHHhcCchhc----cHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence            3455666777766555431    112222333333222    34455566666555544333444444445555566666


Q ss_pred             hcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh---CCC--------CCcchhhHHHHHHHhhcCCh---
Q 039940          201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL---GHP--------SPSVLIPALRTVGNIVTGDD---  266 (449)
Q Consensus       201 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll---~~~--------~~~v~~~a~~~l~~l~~~~~---  266 (449)
                      +-..+......+..|++.++..-..... ++. .++......+   ++.        ........+.++|-++++.+   
T Consensus      1130 i~k~g~a~V~~~vsCl~sl~~k~~~~~~-~v~-~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~ 1207 (1692)
T KOG1020|consen 1130 IVKMGMATVVEAVSCLGSLATKRTDGAK-VVK-ACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPK 1207 (1692)
T ss_pred             HHhcchHHHHHHHHHHHHHHhhhccchH-HHH-HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCC
Confidence            6666777777888888888753211111 111 1222222222   222        22345667888888887421   


Q ss_pred             ----h----hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH--H
Q 039940          267 ----F----QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI--K  336 (449)
Q Consensus       267 ----~----~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v--~  336 (449)
                          .    ........+++..|.-+.+.. +..+|..|...++.+|...+.   .+.+..+...+...+.+.+.+.  +
T Consensus      1208 ~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~~~v~nly~~ila~~n~~~~~k 1283 (1692)
T KOG1020|consen 1208 PSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTSREVLNLYDEILADDNSDIKSK 1283 (1692)
T ss_pred             ccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhhHHHHHHHHHHHhhhcccHHHH
Confidence                0    011234456777777777888 899999999999999975444   2233334444444444442222  2


Q ss_pred             HHHHHHHHHhhcc---------------CCHHHHHHHHH-------cC--------ChHHHHhhccCCCHHHHHHHHHHH
Q 039940          337 KEAAWAISNATKA---------------GTQEQIKYLVR-------EG--------CIKPLCDLLLCADPEIVTVCLKGL  386 (449)
Q Consensus       337 ~~a~~aL~~l~~~---------------~~~~~~~~l~~-------~~--------~~~~L~~ll~~~~~~~~~~~~~~l  386 (449)
                      ..+...+.-....               ...+..+.+..       .|        +++.++...-+.|..++..|++++
T Consensus      1284 i~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl 1363 (1692)
T KOG1020|consen 1284 IQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVL 1363 (1692)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            2333222222211               01112222221       11        233444444567888899999999


Q ss_pred             HHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          387 ENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       387 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      .-+++.+--..                  ...+..|-.|..++.+.+++.|..++...+.
T Consensus      1364 ~liL~QGLVhP------------------~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1364 KLILNQGLVHP------------------VHCVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred             HHHHHccCCCc------------------cchhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence            88887653221                  1125667777778888888888888876653

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.32  E-value=0.89  Score=42.02  Aligned_cols=191  Identities=18%  Similarity=0.264  Sum_probs=117.6

Q ss_pred             HHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH---HhhcCC--CCCChhhhhchHHHHHHhh
Q 039940          127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS---NLCKGK--PQPPFDQVRPVLPALAQLI  201 (449)
Q Consensus       127 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~---~l~~~~--~~~~~~~~~~~l~~l~~ll  201 (449)
                      .|+.+|-.+....+..-..+.+.+++..+++.+.. +       .-.++.   +...+.  +.....   ....  ...+
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~-E-------v~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~i   69 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQY-E-------VDFALEENKNEEAGSGIPPEYKE---SSVD--GYSI   69 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHH-H-------HHHHHhcccccCCCCCCCCCccc---cccc--cccc
Confidence            46667777766666666667788999999988832 1       111111   111111  100000   0000  0000


Q ss_pred             cCCCHHHHHHHHHHHHHccc---CChhHHHHHHH-hCcHHHHHHhhCCCC---CcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940          202 HLDDEEVLRNVCWTLSNLSD---GTNDKIQAVIE-AGVCGPLVELLGHPS---PSVLIPALRTVGNIVTGDDFQTQCVIN  274 (449)
Q Consensus       202 ~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~-~~~~~~L~~ll~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~  274 (449)
                      ......+.+..+..+..+..   +.....+.+++ ..+...|..++++..   +.+-..|+.++..+....+.....+.+
T Consensus        70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e  149 (379)
T PF06025_consen   70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE  149 (379)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            01112334444555555544   33344555666 566777777887753   568888999999999988888888899


Q ss_pred             cCCHHHHHHHhc-cC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940          275 HGAVPYLLALLI-NN--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA  331 (449)
Q Consensus       275 ~~~l~~L~~ll~-~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~  331 (449)
                      .|+.+.+++.+. ..  .+.++....-.+++.+|- +....+.+.+.+.++.+++++.+.
T Consensus       150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence            999999999988 33  145566666677777766 457777888889999888887653

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.28  E-value=0.006  Score=33.16  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      ++|.+++++.+++++||..|+++|+.++.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            368899999999999999999999999764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.28  E-value=0.35  Score=46.84  Aligned_cols=193  Identities=12%  Similarity=0.142  Sum_probs=137.0

Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh
Q 039940          189 QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  268 (449)
Q Consensus       189 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  268 (449)
                      ....++|.+++++...|..+|...+.-+-.....-.   +..++..+++.+..-+.+.++.+|+..+.++..++..-.. 
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence            456899999999999999999888877766654433   3356778899999999999999999999999888754221 


Q ss_pred             HHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC-ChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          269 TQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG-LIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       269 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~-~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                        ..+....+..+..+-.+. +..+|....-+++.++......    ...+ ....+.+.+.+.-..-|..+.+++....
T Consensus       403 --~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 --RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             --hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence              133334555555555544 7889999988999887643221    1233 3445555567776777888888877665


Q ss_pred             ccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          348 KAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       348 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      ..-+...    +...+++.+.-+.-+.+..++..+..++..+....++.
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            5322111    23447888888888888899999999998888776665

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.28  E-value=0.094  Score=44.81  Aligned_cols=101  Identities=14%  Similarity=0.089  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHh
Q 039940           37 SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKL  116 (449)
Q Consensus        37 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  116 (449)
                      .....|++.|.-++--. .+....+-....+..++++|.....+.++..++.+|..+.-+++.+.+.+-+.+|+..++.+
T Consensus       106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            34556778888776543 66677777889999999999665558999999999999999999999999999999999999


Q ss_pred             hCC--CChHHHHHHHHHHHHHhcC
Q 039940          117 LAS--PSDDVREQAVWALGNIVAH  138 (449)
Q Consensus       117 l~~--~~~~~~~~a~~~L~~l~~~  138 (449)
                      +++  .+.+++-.++..|.-....
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHcc
Confidence            986  4588888888888776543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.19  E-value=0.75  Score=43.69  Aligned_cols=107  Identities=17%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940          187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD  266 (449)
Q Consensus       187 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  266 (449)
                      ...+.+.+..+++.+.++|..++..++..++.+...-.+.-+ .+-.+++..|..-+-+..+.+|..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            455578888888888899999999999999988865444333 3444788888888888999999999999988853322


Q ss_pred             hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHH
Q 039940          267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCW  299 (449)
Q Consensus       267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  299 (449)
                      ...     ..+...|..+++..++.+||+.|..
T Consensus       165 nee-----n~~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             ChH-----HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            111     1234466777776658889987744

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.17  E-value=0.0093  Score=32.41  Aligned_cols=30  Identities=20%  Similarity=0.343  Sum_probs=25.8

Q ss_pred             CHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 039940          277 AVPYLLALLINNHKKSIKKESCWTVSNITAG  307 (449)
Q Consensus       277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  307 (449)
                      ++|.+.++++++ +++||..|+++|+.++.+
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence            368899999999 999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.15  E-value=0.22  Score=50.24  Aligned_cols=187  Identities=14%  Similarity=0.089  Sum_probs=132.1

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhh
Q 039940          111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQV  190 (449)
Q Consensus       111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  190 (449)
                      +.+..-+.+.++.-|..++..+........ .....-..+.+-.+++....+.+..+...++.+|..++...........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            344445556788888888888888776554 1111112334555666666788888999999999999988755555556


Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-hhH
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD-FQT  269 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~  269 (449)
                      ....|.++..+......++..+..++-.++....       -....+.+...+++.++.++......+.......+ ...
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            7888889988888888888777777766554222       11456888899999999999998877777665544 222


Q ss_pred             HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          270 QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       270 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      ..-.-.+.++.++....+. +..||..|..+++-+..
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            2222346788888888888 99999999988888765

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.09  E-value=0.41  Score=46.38  Aligned_cols=190  Identities=12%  Similarity=0.162  Sum_probs=133.3

Q ss_pred             HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC
Q 039940          105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ  184 (449)
Q Consensus       105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  184 (449)
                      ++.+++|.+++++...+..+|-..+.-+-+....   ..+.+.+..+++.+...+ .++++.+++..+.++..++..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence            5668999999999999999997666655555433   334455677888888888 889999999999998888765422


Q ss_pred             CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 039940          185 PPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       185 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~  264 (449)
                      .  ......+..+..+-.+++..++.+..-|++.++.......   .+.-....+.+-++++-..-|..+...+......
T Consensus       403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence            2  2224556666665555678899999889988886643221   2222233455567777777888888888666544


Q ss_pred             ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 039940          265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG  307 (449)
Q Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  307 (449)
                      .+.   .-+...+++.+..+..++ +..+|..|..++..+...
T Consensus       478 ~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  478 FDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             cch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHhh
Confidence            332   223456888888888888 888999988888777553

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.09  E-value=0.013  Score=46.49  Aligned_cols=147  Identities=18%  Similarity=0.161  Sum_probs=96.7

Q ss_pred             HHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940          152 LIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAV  230 (449)
Q Consensus       152 i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  230 (449)
                      +..++..+.. ...++++..++-++..+-.   .........+-.++...+...+.+-...++.++..+-...++....+
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            4455666643 4567788888888877731   11112223444555555655555677778888888888887765554


Q ss_pred             H-HhCcHHHHHHhhC--CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh-HHHHHHHHHHH
Q 039940          231 I-EAGVCGPLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS-IKKESCWTVSN  303 (449)
Q Consensus       231 ~-~~~~~~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~l~n  303 (449)
                      + ..|+.+.+..++.  ..+..+...++.+|..-|.  ++.....+...+++.|-.+++.+.+.. +|..|+-+|..
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            4 5588999999998  6677788888888866554  334444555678999999996553565 78888777653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.08  E-value=0.59  Score=40.71  Aligned_cols=202  Identities=12%  Similarity=0.074  Sum_probs=137.0

Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCC---hhhh---hchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP---FDQV---RPVLPALAQLIHLDDEEVLRNVCWTLSN  218 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~---~~~l~~l~~ll~~~~~~~~~~~~~~l~~  218 (449)
                      .+...|.+..++..+ ...+-+.+..++.+..++-+......   ....   ..++..++.--.. .+++.-.+ +.+..
T Consensus        74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~c-g~mlr  150 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTC-GNMLR  150 (342)
T ss_pred             HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHH-HHHHH
Confidence            345678888888888 67778888899999998887762221   1121   3333444433111 13333222 22222


Q ss_pred             cccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC----HHHHHHHhccCCchhHH
Q 039940          219 LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA----VPYLLALLINNHKKSIK  294 (449)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~v~  294 (449)
                      =|...+...+.+..+.-+......++.+.-++...|..++..+..........++..+.    .+.--.++.++ +.-++
T Consensus       151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvtk  229 (342)
T KOG1566|consen  151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVTK  229 (342)
T ss_pred             HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceehH
Confidence            23334445666777788888888999998899999999998887665665555654333    33466677888 99999


Q ss_pred             HHHHHHHHHHhc--CCHH-HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          295 KESCWTVSNITA--GNRK-QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       295 ~~a~~~l~nl~~--~~~~-~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                      ..+...++.+..  ++.. ..+++.+..-+..++.+|.+++..+|-+|-....-.+...
T Consensus       230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            999999999985  3333 2333334567889999999999999999999888888764

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.08  E-value=0.38  Score=45.06  Aligned_cols=265  Identities=13%  Similarity=0.119  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh
Q 039940           38 MQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL  117 (449)
Q Consensus        38 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l  117 (449)
                      -.......|..+.........+..++...+..|+.++++++ ++-|.....+|.++.......|..+.. .+...+..++
T Consensus       106 HL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi  183 (409)
T PF01603_consen  106 HLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFI  183 (409)
T ss_dssp             HHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHh
Confidence            33445556666655432222344566677889999999999 899999999999988755555655543 3456777776


Q ss_pred             CC-CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 039940          118 AS-PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP  195 (449)
Q Consensus       118 ~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  195 (449)
                      .. ....-...++++++.+..+-. ..++.. ..-....++.+.....-...-.....++..++..+|.    ....++.
T Consensus       184 ~e~~~~~gI~elLeil~sii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~  258 (409)
T PF01603_consen  184 YETERHNGIAELLEILGSIINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIK  258 (409)
T ss_dssp             HTTS--STHHHHHHHHHHHHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHH
T ss_pred             cCcccccCHHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHH
Confidence            53 445555667888888876522 111111 0001112222332222334455566666666655432    1123333


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH-
Q 039940          196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI-  273 (449)
Q Consensus       196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-  273 (449)
                      .+++.=-..++.-...-+.-+..+...-+ .....+. ..+...+..++.+++..|.+.|+..+.|     +.....+. 
T Consensus       259 ~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~  332 (409)
T PF01603_consen  259 GLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM-VPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQ  332 (409)
T ss_dssp             HHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHC
T ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHh
Confidence            33333333444444444555555554332 2223222 3577888888999999999988876632     22222221 


Q ss_pred             -hcCCHHHHHHHhccC---C-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          274 -NHGAVPYLLALLINN---H-KKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       274 -~~~~l~~L~~ll~~~---~-~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                       ...+++.+..-+...   + +..++..|..++..+..-++.....+
T Consensus       333 ~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~  379 (409)
T PF01603_consen  333 NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC  379 (409)
T ss_dssp             THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence             123566666666431   1 67899999999999988777755443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.07  E-value=0.89  Score=39.69  Aligned_cols=225  Identities=11%  Similarity=0.128  Sum_probs=149.1

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh----HHHHHH-HhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcC
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND----KIQAVI-EAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~-~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~  264 (449)
                      .+.++.++..+..-+-+.+..++.+..++.+...+    ..+.+. +...+..|+.-  .. .+++...+-..+....++
T Consensus        78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirh  155 (342)
T KOG1566|consen   78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRH  155 (342)
T ss_pred             CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhh
Confidence            47777888888888888888888888887654321    112111 11333333333  12 234443333344444443


Q ss_pred             ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC---C-hHHHHHHhhcCchhHHHHHH
Q 039940          265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG---L-IVPLVNLLQDAEFDIKKEAA  340 (449)
Q Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~-~~~L~~ll~~~~~~v~~~a~  340 (449)
                       +...+.+....-+......+..+ .-++...|..+...+...-...+.+++..+   . .+.--.++.+++.-++..+.
T Consensus       156 -e~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~  233 (342)
T KOG1566|consen  156 -EFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL  233 (342)
T ss_pred             -HHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence             66667777888899999999988 888999999998888763344445555433   2 33355677888999999999


Q ss_pred             HHHHHhhccC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcc-
Q 039940          341 WAISNATKAG--TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAE-  417 (449)
Q Consensus       341 ~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  417 (449)
                      ..++.+...-  .....+++.+...++.++.+|+++...++..|......+.....+.          .+....+.+.. 
T Consensus       234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~----------q~V~~IL~~Nr~  303 (342)
T KOG1566|consen  234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP----------QPVRDILVRNRP  303 (342)
T ss_pred             HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC----------chHHHHHHhCcH
Confidence            9999987752  2334556555567999999999999999999999998877766543          24566665553 


Q ss_pred             -hHHHHHHHhcCC
Q 039940          418 -GFKKIEDLKSHG  429 (449)
Q Consensus       418 -~~~~l~~l~~~~  429 (449)
                       .++.+..+..+.
T Consensus       304 KLl~~l~~f~~d~  316 (342)
T KOG1566|consen  304 KLLELLHDFHTDR  316 (342)
T ss_pred             HHHHHHHHhCCCC
Confidence             455555554444

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.05  E-value=1.7  Score=42.92  Aligned_cols=328  Identities=14%  Similarity=0.085  Sum_probs=184.1

Q ss_pred             hhHhhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940           17 LQTKLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIER-SLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA   94 (449)
Q Consensus        17 ~~~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~   94 (449)
                      .+.+.-....++++++.+ |..+++.+++.+.....+-. .+..-.-.-......+.++++.-..-+.+...+..++.+.
T Consensus       521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI  600 (978)
T KOG1993|consen  521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI  600 (978)
T ss_pred             HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            344455667778888876 78888999999988765421 1111111224556666677765443466777777777776


Q ss_pred             CCChhhhHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcC----CCchhhhHhhcCCHHHHHHHHcccccH---
Q 039940           95 SGTSVNTKVLIDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAH----SPGCRNLVLHEEALIPLLAQLNEHARL---  165 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~l~~~l~~~~~~---  165 (449)
                      ....+...... ..++..+-.+-+  ++.+-+|.+.+.+|.|+...    ++.+..      ++-+++.+-.+-.++   
T Consensus       601 ~r~~e~I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv  673 (978)
T KOG1993|consen  601 ERVSEHIAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHV  673 (978)
T ss_pred             HHHHHhhhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCcee
Confidence            53333332111 111222222221  25567888888899998732    222222      222444444222222   


Q ss_pred             HHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH-cccCChhHHHHHHHhCcHHHHHHhhC
Q 039940          166 SMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN-LSDGTNDKIQAVIEAGVCGPLVELLG  244 (449)
Q Consensus       166 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~L~~ll~  244 (449)
                      ...+.+.........+.+.- ....-+.+|.+...+......++ .++..+.. +.-.++.... ....|+.+.+..++.
T Consensus       674 ~L~EDgmeLW~~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~  750 (978)
T KOG1993|consen  674 YLLEDGMELWLTTLMNSQKL-TPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLD  750 (978)
T ss_pred             ehhhhHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHH
Confidence            24455554444444443222 22335677777777765443332 23333322 2222222222 333488888888888


Q ss_pred             CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChH
Q 039940          245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL-INNHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIV  322 (449)
Q Consensus       245 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~  322 (449)
                      +-..+-....+.++..+...++ ........++++.+..-+ ...+.|.+...-..+++.+.-.+++....+++ ..-.+
T Consensus       751 dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d  829 (978)
T KOG1993|consen  751 DVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYD  829 (978)
T ss_pred             HhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHH
Confidence            7666667777888777766544 444455677888776654 33336778888888888888778887766664 22223


Q ss_pred             HHH--------HHhhc-CchhHHHHHHHHHHHhhccCCHHHH
Q 039940          323 PLV--------NLLQD-AEFDIKKEAAWAISNATKAGTQEQI  355 (449)
Q Consensus       323 ~L~--------~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~  355 (449)
                      .++        .+..+ .+++-|+--+-+++.+...+++...
T Consensus       830 ~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~il  871 (978)
T KOG1993|consen  830 ILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDIL  871 (978)
T ss_pred             HHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHH
Confidence            333        22221 2788888888899999887655443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=96.03  E-value=1.6  Score=48.36  Aligned_cols=272  Identities=8%  Similarity=0.060  Sum_probs=148.1

Q ss_pred             CCCChHHHHHHHHHHHHHhcCC---CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 039940          118 ASPSDDVREQAVWALGNIVAHS---PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL  194 (449)
Q Consensus       118 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  194 (449)
                      .+++..++..|+..|..++..-   .+....-.+...+.++...+.+..+.++++.++.|+.++...........-..++
T Consensus      1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076       1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred             CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence            3456778888888888887422   1211122234567788888877788999999999999887664211111112333


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH-----HHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCC---
Q 039940          195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI-----QAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGD---  265 (449)
Q Consensus       195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~---  265 (449)
                      ..+.......++.+...+..++..+....-...     ..+  ..++..+..+.... +.++-..|+..|++++..-   
T Consensus      1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076       1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence            333333334567777777777776653311100     001  13444455554433 3566667777776552110   


Q ss_pred             h------------------------hhH-----HHHHhcCCHH---HHHHHhccCCchhHHHHHHHHHHHHhc-C----C
Q 039940          266 D------------------------FQT-----QCVINHGAVP---YLLALLINNHKKSIKKESCWTVSNITA-G----N  308 (449)
Q Consensus       266 ~------------------------~~~-----~~~~~~~~l~---~L~~ll~~~~~~~v~~~a~~~l~nl~~-~----~  308 (449)
                      +                        ...     ........++   .|..+..+. +.+||..|..+|-.+.. +    +
T Consensus      1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076       1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred             cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence            0                        000     0000012233   334445666 89999999999888774 1    3


Q ss_pred             HHHHHHHHHCCChHHHHHHhhcC-----------------------chhHHHHHHHHHHHhhccCCHHHHHHHHH--cCC
Q 039940          309 RKQIQAVIDAGLIVPLVNLLQDA-----------------------EFDIKKEAAWAISNATKAGTQEQIKYLVR--EGC  363 (449)
Q Consensus       309 ~~~~~~l~~~~~~~~L~~ll~~~-----------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--~~~  363 (449)
                      ++....+.+ +++.++++.+...                       +..+...+..+|..++.-- ..+...+-.  .++
T Consensus      1384 ~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~ 1461 (1780)
T PLN03076       1384 LPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKV 1461 (1780)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            444444444 5566665555321                       0012233344444444320 112222211  345


Q ss_pred             hHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          364 IKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       364 ~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      +..|..+...++..+...+..+|.+++....
T Consensus      1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076       1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence            6666777778888899999999999986553

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.45  Score=46.10  Aligned_cols=188  Identities=14%  Similarity=0.063  Sum_probs=123.8

Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhcC--Ch---hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940          236 CGPLVELLGHPSPSVLIPALRTVGNIVTG--DD---FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  310 (449)
                      -+.+.+-|+-.+..||.+|+..+-++---  .+   +....+++ +-...+.++|+++ -+.+|..|...++.+...   
T Consensus       176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~---  250 (1005)
T KOG1949|consen  176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK---  250 (1005)
T ss_pred             hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH---
Confidence            35566667788999999999998887432  11   12223332 3466789999999 999999998888877541   


Q ss_pred             HHHHHHHCCChHHHH----HHh-hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940          311 QIQAVIDAGLIVPLV----NLL-QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG  385 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~----~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~  385 (449)
                       ...++-..++..++    +-+ .+...+||......|..++..  +..... .+. +++.+-..+++....+|.++.+.
T Consensus       251 -fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~-le~-~Lpal~~~l~D~se~VRvA~vd~  325 (1005)
T KOG1949|consen  251 -FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPL-LEQ-LLPALRYSLHDNSEKVRVAFVDM  325 (1005)
T ss_pred             -HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhH-HHH-HHHhcchhhhccchhHHHHHHHH
Confidence             11222222232232    222 233568998888888888874  333222 222 56677788888999999999988


Q ss_pred             HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      |..+-...               +.+.+.-+..-..|..|..++.+--+..+.-++..||+..
T Consensus       326 ll~ik~vr---------------a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~  373 (1005)
T KOG1949|consen  326 LLKIKAVR---------------AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN  373 (1005)
T ss_pred             HHHHHhhh---------------hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Confidence            87665432               2444444445566777777777777888888888888753

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.92  E-value=0.075  Score=35.52  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 039940          251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG  319 (449)
Q Consensus       251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  319 (449)
                      .+.++|+++++++. +.....+.+.++++.++++..+.+...+|-.+.++|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            46799999999885 55556566789999999999877578899999999998865 556665555544

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.90  E-value=0.092  Score=35.10  Aligned_cols=66  Identities=17%  Similarity=0.338  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcC
Q 039940          294 KKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREG  362 (449)
Q Consensus       294 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  362 (449)
                      .+.|.|+++++++ ++..+..+.+.++++.++++.... ...+|-.|.++|+-++.  +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            5789999999976 456676777789999999998755 68899999999999887  567777666554

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.87  E-value=1.4  Score=40.17  Aligned_cols=209  Identities=15%  Similarity=0.117  Sum_probs=133.3

Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhc-CChhhHHHHHhc-C-CHHHHHHHhccCC----c--------hhHHHHHHHH
Q 039940          236 CGPLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCVINH-G-AVPYLLALLINNH----K--------KSIKKESCWT  300 (449)
Q Consensus       236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~l~~L~~ll~~~~----~--------~~v~~~a~~~  300 (449)
                      +..+...|......+...++..|..++. .+......+... + -.+.+-+++....    +        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6788888988888888899999999998 555666666532 1 2234444442210    1        2788888766


Q ss_pred             HHHHhc-CCHHHHHHHHH-CCChHHHHHHhhcCchhHHHHHHHHHHHhhccC---CHHHHHHHHHcCChHHHHhhccCCC
Q 039940          301 VSNITA-GNRKQIQAVID-AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG---TQEQIKYLVREGCIKPLCDLLLCAD  375 (449)
Q Consensus       301 l~nl~~-~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~~l~~~~~~~~L~~ll~~~~  375 (449)
                      +..+.. +++..+..+++ .+.+..+.+-+..+++++....+.++..-+...   .+...-.+.++..+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            655554 67777777774 677888888888889999999999998544432   1334445566678999999888877


Q ss_pred             H----HHHHHHHHHHHHHHHhhhhhhccCCC-CCc----------ccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHH
Q 039940          376 P----EIVTVCLKGLENILKVGEAKKNRGST-IGD----------VNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI  440 (449)
Q Consensus       376 ~----~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~  440 (449)
                      +    .+...+-+.|..++......-.-.+. .+.          .+.-...+...-....|..+...+++.-++.+.+|
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~Lvl~I  297 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQELVLKI  297 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHHHHHHH
Confidence            7    88889999998888544321110000 000          00000000011124455666667777778888887


Q ss_pred             HHHh
Q 039940          441 LETY  444 (449)
Q Consensus       441 i~~~  444 (449)
                      ++.+
T Consensus       298 l~~~  301 (330)
T PF11707_consen  298 LKAC  301 (330)
T ss_pred             HHHC
Confidence            7754

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.76  E-value=0.87  Score=41.94  Aligned_cols=92  Identities=18%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-CCh-HHHHHHHHHHHHHhcCCCchhh
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-PSD-DVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~-~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      +..+++-+.+.....++..++--|+.-+. +++.+..+...|....+.+.+.. ++. ...-.++.++.-++.+.+ ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            56677777755557889999888888887 79999999999999999999954 333 333333444444444443 333


Q ss_pred             hHhhcCCHHHHHHHHc
Q 039940          145 LVLHEEALIPLLAQLN  160 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~  160 (449)
                      .+...+....++.++.
T Consensus       101 l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhhchhHHHHHHHHhc
Confidence            3334444545566663

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.75  E-value=0.33  Score=47.16  Aligned_cols=214  Identities=14%  Similarity=0.102  Sum_probs=130.2

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940          164 RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL  243 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll  243 (449)
                      |+.-+..-...|..+..+.|.  ......++|.++..+.+  ....-..+-.+..++...+.   ..+...+++.|...+
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp~--rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~  358 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFPA--RVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIY  358 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCCH--HHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccch---hhhhhhhhHHHHHHh
Confidence            444444555556666555432  23335778888777743  22233333333344433332   233446778888888


Q ss_pred             CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940          244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP  323 (449)
Q Consensus       244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  323 (449)
                      +..++  ....+.++-++-.--......-+...+++.|..-+++. +..++..+...+...+..-+   ...++.-++|.
T Consensus       359 ~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~  432 (700)
T KOG2137|consen  359 SASDP--KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPR  432 (700)
T ss_pred             ccCCc--ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHH
Confidence            75332  22333334343111111112234456888999999998 99999999999998876322   13455568888


Q ss_pred             HHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          324 LVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       324 L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +..+... .+..++.+++.|+..++...+.   ....+  .+..+....+..|+.+...++.+..+++-....
T Consensus       433 l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~---~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~  500 (700)
T KOG2137|consen  433 LKNLAFKTTNLYVKVNVLPCLAGLIQRLDK---AAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYS  500 (700)
T ss_pred             hhcchhcccchHHHHHHHHHHHHHHHHHHH---HHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence            8887543 4889999999999999853221   11122  466677777888999999999998888866544

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.19  Score=47.30  Aligned_cols=152  Identities=18%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             HHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh-hcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhC
Q 039940          156 LAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQL-IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAG  234 (449)
Q Consensus       156 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  234 (449)
                      ++-+..+.++.++...+.++..-..+-.      ..+++..+++. ....|.++++.+.-+|+.+|-.+.+         
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3333355566666665555443222210      13455566665 4566899999999999999866543         


Q ss_pred             cHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHH
Q 039940          235 VCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQI  312 (449)
Q Consensus       235 ~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~  312 (449)
                      .+...+.+|. +.++.+|...+.+|+-.|.+.....       .+..|-.++.+. ..-||..|+-+++.+.. ++++..
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~Q~n~~Ln  657 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDT-NDFVRQSAMIAVGMILMQCNPELN  657 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCc-HHHHHHHHHHHHHHHHhhcCcccC
Confidence            3444555554 4678899999999999988765433       345566677777 88899999999998875 444322


Q ss_pred             HHHHHCCChHHHHHHhhcCc
Q 039940          313 QAVIDAGLIVPLVNLLQDAE  332 (449)
Q Consensus       313 ~~l~~~~~~~~L~~ll~~~~  332 (449)
                      ..+  .++.+.+.+++.+.+
T Consensus       658 p~v--~~I~k~f~~vI~~Kh  675 (926)
T COG5116         658 PNV--KRIIKKFNRVIVDKH  675 (926)
T ss_pred             hhH--HHHHHHHHHHHhhhh
Confidence            222  246667777776653

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=2.4  Score=41.69  Aligned_cols=300  Identities=12%  Similarity=0.041  Sum_probs=165.8

Q ss_pred             HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--------CChHHHHHHHHHHHHHhc--CCCchhhhHhhcCCHHH
Q 039940           85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIP  154 (449)
Q Consensus        85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~  154 (449)
                      +|+.++..+....+    .-.-.|+++.+...+..        .+..-.+.|++.++++..  ..+....-+++.-.++.
T Consensus       389 aal~fl~~~~sKrk----e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRK----EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccc----hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            45555555544222    22234889999999832        234556778888888764  22222223334444555


Q ss_pred             HHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh-
Q 039940          155 LLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA-  233 (449)
Q Consensus       155 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-  233 (449)
                      ++..+ ++...-++..+|..++.+..+-  ........+......++++++-.++..+.-++..+..+..  ....+.. 
T Consensus       465 v~P~f-~s~ygfL~Srace~is~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sah  539 (970)
T COG5656         465 VIPAF-RSNYGFLKSRACEFISTIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAH  539 (970)
T ss_pred             hhHhh-cCcccchHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhh
Confidence            55555 6666778889999999995443  3334445677778888888888899888888888776652  2223333 


Q ss_pred             --CcHHHHHHhhCCCCCcchhhHHHHH-HHhhcCChhhHHHHHh---cCCHHHHHHHhccCCc-----hhHHHHHHHHHH
Q 039940          234 --GVCGPLVELLGHPSPSVLIPALRTV-GNIVTGDDFQTQCVIN---HGAVPYLLALLINNHK-----KSIKKESCWTVS  302 (449)
Q Consensus       234 --~~~~~L~~ll~~~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~-----~~v~~~a~~~l~  302 (449)
                        +.++.|+.+-+.-+-++...++..+ +..+..-......+..   ...++....++..+.+     .+-+..|.+.|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence              3344555554444444444444432 2222211111111111   1223333444433311     122334555555


Q ss_pred             HHhc------CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940          303 NITA------GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP  376 (449)
Q Consensus       303 nl~~------~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~  376 (449)
                      .+..      ..+...+.+ .....|.+--.+.+.-.++-.+|+..+-+..-. .++-...+  -|+.+.+.+++.+...
T Consensus       620 T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pim--wgi~Ell~~~l~~~~t  695 (970)
T COG5656         620 TIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEPIM--WGIFELLLNLLIDEIT  695 (970)
T ss_pred             HHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhhh--hHHHHHHHhcccccch
Confidence            4432      233333332 234555555566666677888888777766543 22222211  2467777777777664


Q ss_pred             -HHHHHHHHHHHHHHHhhhhhh
Q 039940          377 -EIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       377 -~~~~~~~~~l~~l~~~~~~~~  397 (449)
                       .-.+.+..++.|++.++.+.-
T Consensus       696 ~~y~ee~~~al~nfityG~~ef  717 (970)
T COG5656         696 AVYSEEVADALDNFITYGKTEF  717 (970)
T ss_pred             hhhHHHHHHHHHHHHHhCcccc
Confidence             556778889999998886544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.68  E-value=0.38  Score=46.48  Aligned_cols=182  Identities=15%  Similarity=0.162  Sum_probs=119.8

Q ss_pred             hHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChh
Q 039940          193 VLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       193 ~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~  267 (449)
                      +-|.+.....+    +|+.++..|.-+|..+---+.+.    .. .-+|.++..+. +++|.+|..|+-.++.++.....
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            34455555444    57888888887777654322221    11 44788888887 78999999999999988765443


Q ss_pred             hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                      ..+.     .-..|..-|.+. +..||+.+..++.++.-..     .+--.|-++.+..+|.+++.++...|-..+..++
T Consensus       968 ~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            3332     234577777788 8999999999999987533     2223588899999999999999999999999998


Q ss_pred             ccCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhhhh
Q 039940          348 KAGTQEQIKYLVREGCIKPLCDLLLC---ADPEIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       348 ~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~~~  397 (449)
                      ...+ ..     -.|.++..-.+-++   ++.+ -...++.|..++......+
T Consensus      1037 ~KdN-t~-----yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~k 1082 (1128)
T COG5098        1037 KKDN-TM-----YNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQK 1082 (1128)
T ss_pred             hccc-ch-----hhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHH
Confidence            7632 21     12333333222211   1222 4556667777776654433

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.52  E-value=1.5  Score=38.21  Aligned_cols=226  Identities=13%  Similarity=0.107  Sum_probs=137.2

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc-ccHHHHHHHHHHHHHhhcCCCCCChhh
Q 039940          111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH-ARLSMLRIGTWTLSNLCKGKPQPPFDQ  189 (449)
Q Consensus       111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~  189 (449)
                      ..|-..|.++++.+|..++..|+.+...-|..   .+...-+..++..+.+. .|......++..+..|.... ......
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence            34567788999999999999999988665431   12233344555544221 35555656677777777443 222222


Q ss_pred             hhchHHHHHHhhc--CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCCh
Q 039940          190 VRPVLPALAQLIH--LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTGDD  266 (449)
Q Consensus       190 ~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~  266 (449)
                      ...++..+..-.+  +--...|..+...+..+..+....... +..+++..++..+.. .||+-...+...+..+....+
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            3344444443322  223667888888888887665443322 223677777777776 567777777777776655433


Q ss_pred             hhHHHHHhcCCHHHHHHHhcc--------CC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH
Q 039940          267 FQTQCVINHGAVPYLLALLIN--------NH-KK--SIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI  335 (449)
Q Consensus       267 ~~~~~~~~~~~l~~L~~ll~~--------~~-~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v  335 (449)
                      -       ....+.+.+.+..        +. |+  -.+..-..+|.+....++....     -.+|.|++-|.++.+.+
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHH
Confidence            1       2344444444422        11 22  2455555666666665554322     36889999999999999


Q ss_pred             HHHHHHHHHHhhccCCHH
Q 039940          336 KKEAAWAISNATKAGTQE  353 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~  353 (449)
                      +..++.+|..++..-+.+
T Consensus       225 K~D~L~tL~~c~~~y~~~  242 (262)
T PF14500_consen  225 KLDSLQTLKACIENYGAD  242 (262)
T ss_pred             HHHHHHHHHHHHHHCCHH
Confidence            999999999888764443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.49  E-value=0.62  Score=47.14  Aligned_cols=187  Identities=14%  Similarity=0.110  Sum_probs=124.9

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHH
Q 039940          161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPL  239 (449)
Q Consensus       161 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L  239 (449)
                      .+.+..-+..++..+.-..............+.+-.+.+.. .+.|..+...++.+|..++........... .++.+.+
T Consensus       263 ~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~l  341 (815)
T KOG1820|consen  263 LSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSL  341 (815)
T ss_pred             hccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchH
Confidence            34556667777777777776654112222233444444433 355788888899999988876554433333 3678899


Q ss_pred             HHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHC
Q 039940          240 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR-KQIQAVIDA  318 (449)
Q Consensus       240 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~  318 (449)
                      ++.+......++..+..++-.++....-       ....+.+...++++ ++.++.+....+........ .....-.-.
T Consensus       342 ld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~  413 (815)
T KOG1820|consen  342 LDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETVK  413 (815)
T ss_pred             HHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence            9999888888888887777665543221       23677888899999 99999998777777765322 111112223


Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940          319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK  356 (449)
Q Consensus       319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  356 (449)
                      ++++.++....+.+.+||..|..++.-+....+.+...
T Consensus       414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~  451 (815)
T KOG1820|consen  414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK  451 (815)
T ss_pred             HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            67888888888889999999999999887754444333

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.089  Score=45.50  Aligned_cols=146  Identities=12%  Similarity=0.179  Sum_probs=97.5

Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          236 CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                      +...+..|.+.+|.....++..+..++...++.....+ ..++-.+++-+++. ...|-+.||.+++.+...-...+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778889999999999999999877554433333 23566677777888 88899999999999986322322222


Q ss_pred             HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          316 IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       316 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      .+ +.+..|..--..++.-+++.|-.+|..++.+..+..        ++..|...+...++.++..+..++.+....
T Consensus       168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r  235 (334)
T KOG2933|consen  168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVIR  235 (334)
T ss_pred             HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccccee
Confidence            11 222222222222356789999999999998755433        466677778888888887777666555433

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.44  E-value=0.23  Score=39.56  Aligned_cols=147  Identities=13%  Similarity=0.088  Sum_probs=87.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      ..++.|+.+++.+....++.+++++++.+..-+|...+.+....  +.-.  -...+........   .+. ...+. .+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l---~~~-~~~~~-~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISL---PMM-GISPS-SE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHH---hhc-cCCCc-hH
Confidence            34677888888876689999999999999997665444322211  1000  0111122222111   111 11111 12


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  220 (449)
                      ...-..++..++..+.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2223346677888885444444455677777777766555557777899999999998777777777776666543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.32  E-value=3.6  Score=41.54  Aligned_cols=192  Identities=16%  Similarity=0.103  Sum_probs=111.6

Q ss_pred             HHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhcCCCH-H
Q 039940          131 ALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP--ALAQLIHLDDE-E  207 (449)
Q Consensus       131 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~  207 (449)
                      +++++....|.....+.+.+++..+...+..-...++...++..+.+++...+..........+.  .+..++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45577777777777888999999999999766778889999999999988764333333222222  33333433333 5


Q ss_pred             HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-ChhhHHHHHhcCCHHH-HHHHh
Q 039940          208 VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-DDFQTQCVINHGAVPY-LLALL  285 (449)
Q Consensus       208 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~-L~~ll  285 (449)
                      .-..++..++.+....++...                   ..-+..+...+...... ......... ...+.. +..++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~-~~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVIN-DRSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehh-hhhcchhHHHHh
Confidence            555666666665544332111                   11122222222222111 111111111 222333 55566


Q ss_pred             ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHH
Q 039940          286 INNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWA  342 (449)
Q Consensus       286 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~a  342 (449)
                      ..+..+..+--|.|++.+++..+++......+.|+++.+.+.-... ..+++..+...
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV  691 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence            5554777888999999999998888777777888888887764332 34444444433

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=95.27  E-value=0.47  Score=36.63  Aligned_cols=76  Identities=11%  Similarity=-0.035  Sum_probs=64.0

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..+..-+.+.++.++..|+..|-.++.++...+...+...+++..|+.++..      .++.|+.+++..+.......
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            455677778888999999999999999999888888888888899999999863      46789999999998887655


Q ss_pred             hh
Q 039940          394 EA  395 (449)
Q Consensus       394 ~~  395 (449)
                      .+
T Consensus       119 ~~  120 (139)
T cd03567         119 PH  120 (139)
T ss_pred             cc
Confidence            43

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.23  E-value=1.7  Score=37.20  Aligned_cols=202  Identities=18%  Similarity=0.154  Sum_probs=117.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV  146 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  146 (449)
                      ++.|+.-+....+++.+...+..|..++.+......     -++..+..+.+.+....+.-+.+.+..+-..++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            445555344444489999999999999985412222     235666666777777776677777777765544321   


Q ss_pred             hhcCCHHHHHHHH---------cccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHH
Q 039940          147 LHEEALIPLLAQL---------NEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTL  216 (449)
Q Consensus       147 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l  216 (449)
                         +.+..++...         ..+...+.......++..+|...|.    .-...++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               3344444431         1122334455556788888888766    3456778888888 778888999999999


Q ss_pred             HHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhccC
Q 039940          217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLINN  288 (449)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~  288 (449)
                      ..++....-...     .....+..-+..+ .+.+....+..+..+..+. +.......+..++..+.++..+.
T Consensus       147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            999943221111     2233444444332 3444444444444433321 11111223455677777777666

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.18  E-value=1.5  Score=40.40  Aligned_cols=275  Identities=17%  Similarity=0.154  Sum_probs=139.8

Q ss_pred             hHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCCh
Q 039940          110 VPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPF  187 (449)
Q Consensus       110 i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~  187 (449)
                      +.++++-+. +....+|..++--|+.-+. ++.++..+...|....+++.+.+.++..+...++.++..+...+ .....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            456666665 3446778777777777765 46788899999999999999965555545555555555544443 43444


Q ss_pred             hhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC---------CCCCcchhhHHHH
Q 039940          188 DQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG---------HPSPSVLIPALRT  257 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~a~~~  257 (449)
                      .........+..++... ........-      ..... ...... ......+...+.         .....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~-~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKK-NLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhhhh-hhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            33456666667777611 000000000      00000 000011 111222222221         1223345556666


Q ss_pred             HHHhhcC--------------ChhhHHHHHhcCCHHHHHHHhcc----CC------c-----hhHHHHHHHHHHHHhcCC
Q 039940          258 VGNIVTG--------------DDFQTQCVINHGAVPYLLALLIN----NH------K-----KSIKKESCWTVSNITAGN  308 (449)
Q Consensus       258 l~~l~~~--------------~~~~~~~~~~~~~l~~L~~ll~~----~~------~-----~~v~~~a~~~l~nl~~~~  308 (449)
                      +-.++..              .+..++.+...|+++.++..+..    ..      +     ...-..+..+|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            6555311              12234455667889999888852    10      0     112334566666666555


Q ss_pred             HHHHHHHHH--CCChHHHHHHh----hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH---HHhh----cc---
Q 039940          309 RKQIQAVID--AGLIVPLVNLL----QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP---LCDL----LL---  372 (449)
Q Consensus       309 ~~~~~~l~~--~~~~~~L~~ll----~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~---L~~l----l~---  372 (449)
                      .++..+++.  .+.++.+...+    ..........++..+.|+..+ ++..+..+...++...   +...    ..   
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            555555553  23333333322    222345567788889999876 4444444443322111   1111    11   


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhh
Q 039940          373 ----CADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       373 ----~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                          ...-++..-+++++.|+++..+
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeCc
Confidence                1122456667777777776544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=1.3  Score=43.20  Aligned_cols=230  Identities=13%  Similarity=0.048  Sum_probs=130.6

Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC-
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK---PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT-  223 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-  223 (449)
                      +.++++.++..-..-+...+-...=.+++.+....   .........-.-|.+.+-|+-.|..++.+|+..+.++---. 
T Consensus       127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d  206 (1005)
T KOG1949|consen  127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD  206 (1005)
T ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence            55666666654433222222222223344443332   11111222333466777788889999999999998876321 


Q ss_pred             -h---hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcC----CHHHHHHHhccCCchhHHH
Q 039940          224 -N---DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHG----AVPYLLALLINNHKKSIKK  295 (449)
Q Consensus       224 -~---~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~ll~~~~~~~v~~  295 (449)
                       +   +..+.+++. =...+.++|.++-+.+|..|..-+..+.+..    ..++...    ++..+..-+......+||-
T Consensus       207 pd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR~  281 (1005)
T KOG1949|consen  207 PDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVRC  281 (1005)
T ss_pred             CCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence             1   223344443 3578899999999999999988776665421    1222222    3444444444443567888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC
Q 039940          296 ESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD  375 (449)
Q Consensus       296 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~  375 (449)
                      .....|..+... |..- .+.+ .++|.+-..+.+.+..||..+...|..+=..    ..-.+..---++.++.-|..++
T Consensus       282 svf~gl~~~l~n-p~sh-~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v----ra~~f~~I~~~d~~l~~L~~d~  354 (1005)
T KOG1949|consen  282 SVFKGLPMILDN-PLSH-PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV----RAAKFWKICPMDHILVRLETDS  354 (1005)
T ss_pred             hHhcCcHHHHcC-ccch-hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh----hhhhhhccccHHHHHHHHhccc
Confidence            888888888653 2221 2222 2566777778888889998888888776433    1112222223555666666666


Q ss_pred             HHHHHHHHHHHHHH
Q 039940          376 PEIVTVCLKGLENI  389 (449)
Q Consensus       376 ~~~~~~~~~~l~~l  389 (449)
                      .++....+..+-+.
T Consensus       355 ~~v~rr~~~li~~s  368 (1005)
T KOG1949|consen  355 RPVSRRLVSLIFNS  368 (1005)
T ss_pred             cHHHHHHHHHHHHh
Confidence            65555444444333

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.89  E-value=2.1  Score=40.51  Aligned_cols=157  Identities=12%  Similarity=0.164  Sum_probs=109.9

Q ss_pred             HHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCch----hHHHHHHHHHHHHhcCCHHHH
Q 039940          237 GPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK----SIKKESCWTVSNITAGNRKQI  312 (449)
Q Consensus       237 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~----~v~~~a~~~l~nl~~~~~~~~  312 (449)
                      ..+...+.+++..-+..++.-+..++.. ......++...++..|..++.++ +.    .+......+++.+..+.--..
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg-~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDG-RVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4566677788877788888888888775 67778888999999999999887 43    344444455554443221000


Q ss_pred             HHHHHCCChHHHHHHhh--cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940          313 QAVIDAGLIVPLVNLLQ--DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       313 ~~l~~~~~~~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~  390 (449)
                       ..+...++.....+.+  ..+..+-..|+..|.+++.. +......+.++--++.|+.-++..|..+...++..+..++
T Consensus       164 -~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~-s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  164 -ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG-SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             -eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC-ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence             0111123333333332  23667788889999999886 5556677777888999999999999999999999999999


Q ss_pred             Hhhhhhh
Q 039940          391 KVGEAKK  397 (449)
Q Consensus       391 ~~~~~~~  397 (449)
                      ...++..
T Consensus       242 ~~a~~~~  248 (713)
T KOG2999|consen  242 RKAPDDK  248 (713)
T ss_pred             hhCChHH
Confidence            8887653

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.83  E-value=1.1  Score=36.81  Aligned_cols=146  Identities=18%  Similarity=0.165  Sum_probs=94.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940           24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKV  103 (449)
Q Consensus        24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  103 (449)
                      ++.+++...+.+..++..|+..+.......--.+..      .+|.++.+..+++ +.++..|...+..+....+.....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence            567888888999999999999998887543222222      5899999999999 899999999999999866655544


Q ss_pred             HHhCCChHHHHHhhC---CCC-hHH---HHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc-------cHHHHH
Q 039940          104 LIDHGAVPIFVKLLA---SPS-DDV---REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA-------RLSMLR  169 (449)
Q Consensus       104 ~~~~~~i~~L~~~l~---~~~-~~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~  169 (449)
                      -...| +..-..+-.   .+. ...   ....+..+..+...+...|..+     +..+++.+..+.       .+.-..
T Consensus        83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~  156 (187)
T PF12830_consen   83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD  156 (187)
T ss_pred             HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence            44333 333333221   111 111   4555666777766554444443     556666664322       344456


Q ss_pred             HHHHHHHHhhcCC
Q 039940          170 IGTWTLSNLCKGK  182 (449)
Q Consensus       170 ~a~~~l~~l~~~~  182 (449)
                      ...++..||+.-+
T Consensus       157 ~~~Fla~nLA~l~  169 (187)
T PF12830_consen  157 FLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHhcCC
Confidence            6666666776654

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.80  E-value=0.81  Score=37.14  Aligned_cols=145  Identities=14%  Similarity=0.165  Sum_probs=90.9

Q ss_pred             chhhHHHHHHHhhcCChh-----hHHHHHh------cCCH-HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039940          250 VLIPALRTVGNIVTGDDF-----QTQCVIN------HGAV-PYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID  317 (449)
Q Consensus       250 v~~~a~~~l~~l~~~~~~-----~~~~~~~------~~~l-~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  317 (449)
                      +|..|+.+|..++...+.     +-..++.      ...- ..+.-++.++ ++++|..|+.++..+..++.......-+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            567777777777765221     1111221      1223 3344445666 9999999999999999887665544332


Q ss_pred             CC-------------------ChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH
Q 039940          318 AG-------------------LIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE  377 (449)
Q Consensus       318 ~~-------------------~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  377 (449)
                      .+                   +-..|+..+..+ +..+....+.++..++....-...+.=.-..++..+..++.+.|++
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            21                   122344455544 7778889999999999875332221100112456666777889999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 039940          378 IVTVCLKGLENILKVGEA  395 (449)
Q Consensus       378 ~~~~~~~~l~~l~~~~~~  395 (449)
                      ++..++.++..++...+.
T Consensus       161 v~v~~l~~~~~l~s~~~~  178 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQPP  178 (182)
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            999999999988866543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.72  E-value=1  Score=41.52  Aligned_cols=142  Identities=17%  Similarity=0.167  Sum_probs=83.4

Q ss_pred             chHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC------CCCCcchhhHHHHHHHhhcC
Q 039940          192 PVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG------HPSPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       192 ~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~l~~l~~~  264 (449)
                      .-...+-+-+..+| ..-+..|+..+..++.........++.    ..+-.++.      ..++.-+..|+..++.++..
T Consensus       210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k  285 (370)
T PF08506_consen  210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASK  285 (370)
T ss_dssp             SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred             CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence            33445555554333 445667888888888554433222222    22222332      34566777899999998865


Q ss_pred             Chh------------hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc
Q 039940          265 DDF------------QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE  332 (449)
Q Consensus       265 ~~~------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  332 (449)
                      ...            ....+....++|-|. --.+. .+-++..|++.+..+-..-+.  ..+.  +++|.+++.|.+++
T Consensus       286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~  359 (370)
T PF08506_consen  286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSS  359 (370)
T ss_dssp             S--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-
T ss_pred             hccccCCcccccccccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCC
Confidence            421            223444555666555 11133 678999999999999664332  1233  38999999999999


Q ss_pred             hhHHHHHHHHH
Q 039940          333 FDIKKEAAWAI  343 (449)
Q Consensus       333 ~~v~~~a~~aL  343 (449)
                      .-|...|+.|+
T Consensus       360 ~vv~tyAA~~i  370 (370)
T PF08506_consen  360 YVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cchhhhhhhhC
Confidence            99999988775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=0.36  Score=41.95  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=104.8

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  270 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  270 (449)
                      ...+.-.+..|.++|.......+..+..++...++.....+. .++-.+++-+++....|-..||.+++.+.........
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777888899999999999999999877765554444 4677777888888888999999999998765444433


Q ss_pred             HHHhcCCHHHHHHHh-ccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          271 CVINHGAVPYLLALL-INN--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll-~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                      .     -++.++..| ...  .+.-++..|-.+|..+..+-...       .+++.|+..+...++.++..++.++.+..
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            3     233333333 222  13458888999998887643222       25667777888889999999988888877


Q ss_pred             ccC
Q 039940          348 KAG  350 (449)
Q Consensus       348 ~~~  350 (449)
                      ...
T Consensus       234 ~rl  236 (334)
T KOG2933|consen  234 IRL  236 (334)
T ss_pred             eec
Confidence            654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.69  E-value=2.5  Score=36.26  Aligned_cols=138  Identities=18%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940          153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE  232 (449)
Q Consensus       153 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  232 (449)
                      +.++..+.+..+++.+...+.+|..++..+.    .....++..+..+...+......-+.+.+..+...++...     
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence            4455556677889999999999999999861    3335667777777777777776666666666665554221     


Q ss_pred             hCcHHHHHHh--hC-----C---CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHH
Q 039940          233 AGVCGPLVEL--LG-----H---PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL-INNHKKSIKKESCWTV  301 (449)
Q Consensus       233 ~~~~~~L~~l--l~-----~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l  301 (449)
                       +.+..++..  ++     .   ...+........+..+|...++..     ..+++.+..++ ++. ++.++..+..++
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~-~~~~~alale~l  146 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSC-DEVAQALALEAL  146 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence             233333333  11     1   122333444557777777666522     23677888888 666 788888999999


Q ss_pred             HHHhc
Q 039940          302 SNITA  306 (449)
Q Consensus       302 ~nl~~  306 (449)
                      ..++.
T Consensus       147 ~~Lc~  151 (234)
T PF12530_consen  147 APLCE  151 (234)
T ss_pred             HHHHH
Confidence            99984

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.66  E-value=2  Score=42.12  Aligned_cols=153  Identities=11%  Similarity=0.072  Sum_probs=98.6

Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCCh
Q 039940          188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDD  266 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~  266 (449)
                      ...+.++|.|...+++.+..++..++..+...+..-+.  . .+..-++|.+..+ +++.+..++..++-|++.++..-+
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~-~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD  461 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV--P-FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD  461 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--H-HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence            44578889999999999999999999999888866542  2 4445677777765 345677899999999988873211


Q ss_pred             hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH--HHHHHH
Q 039940          267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE--AAWAIS  344 (449)
Q Consensus       267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~--a~~aL~  344 (449)
                          ...-...+..+.+..+.. ++.+......+..++....... ..+.-..++|.++.+...+.....+.  .+..+.
T Consensus       462 ----~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~  535 (700)
T KOG2137|consen  462 ----KAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIR  535 (700)
T ss_pred             ----HHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHHHHH
Confidence                111122345555556666 8888777777777766532222 34445678898888877664333322  233444


Q ss_pred             Hhhcc
Q 039940          345 NATKA  349 (449)
Q Consensus       345 ~l~~~  349 (449)
                      .+...
T Consensus       536 ~ml~~  540 (700)
T KOG2137|consen  536 LMLSA  540 (700)
T ss_pred             HHHhh
Confidence            44443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.65  E-value=4.4  Score=38.93  Aligned_cols=288  Identities=15%  Similarity=0.092  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH
Q 039940           36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK  115 (449)
Q Consensus        36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  115 (449)
                      ...|..|+..|+.....-.-.....     +....-+++......+.+..+...+..+......... ....-....+  
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~~fF~~I--   75 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRAEFFRDI--   75 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHHHHHHHH--
Confidence            3456677777777665432222222     3444456677666578999999999988874433111 1111111111  


Q ss_pred             hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc--------------------------cHHHHH
Q 039940          116 LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA--------------------------RLSMLR  169 (449)
Q Consensus       116 ~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~~  169 (449)
                       -....++.-..-+.+|..|+.+.... .. .+.+..+.+...+....                          +.....
T Consensus        76 -~~~~~~~d~~~~l~aL~~LT~~Grdi-~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   76 -SDPSNDDDFDLRLEALIALTDNGRDI-DF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             -hcCCCchhHHHHHHHHHHHHcCCcCc-hh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence             22233333445566667776554333 11 35566666665552111                          222333


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccC---ChhHHHHHHHhCcHHHHHHhhC
Q 039940          170 IGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDG---TNDKIQAVIEAGVCGPLVELLG  244 (449)
Q Consensus       170 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~ll~  244 (449)
                      ..+..+.++.+.. .........+++..++.+.. +.+......++..+-.+...   +++...     .++..|.... 
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~-  226 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV-  226 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence            4444445555444 22223333445554444432 22333334444443333221   111111     2333344332 


Q ss_pred             CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-C
Q 039940          245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-----HKKSIKKESCWTVSNITAGNRKQIQAVID-A  318 (449)
Q Consensus       245 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~  318 (449)
                       ...+....+-.++.|++...-..       ..+..|..+|..+     .+..+.+-|...+..+..+..+....-+. .
T Consensus       227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~  298 (464)
T PF11864_consen  227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS  298 (464)
T ss_pred             -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence             22367777888899988643221       1456677777322     14556778888898888755222211122 2


Q ss_pred             C--ChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940          319 G--LIVPLVNLLQDAEFDIKKEAAWAISNATK  348 (449)
Q Consensus       319 ~--~~~~L~~ll~~~~~~v~~~a~~aL~~l~~  348 (449)
                      -  +++.+...++.+++.+-.+....+.++..
T Consensus       299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            2  78888888888887887788888888873

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=94.61  E-value=2.8  Score=36.49  Aligned_cols=214  Identities=18%  Similarity=0.121  Sum_probs=122.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCC--CC-cHHHHH------Hc-CCHH----HHHHhhcCCCCHHHHHHHHHHHHH
Q 039940           27 MVAGVWSDDNSMQLEAATQFRRLLSIER--SL-PIDEVI------QA-GIVP----RFVEFLLREDYPRLQFEAAWVLTN   92 (449)
Q Consensus        27 l~~~l~s~~~~~~~~a~~~L~~l~~~~~--~~-~~~~~~------~~-~~i~----~L~~ll~~~~~~~~~~~a~~~L~~   92 (449)
                      -+.+|.+.++..-..|+..|.++...-.  .+ ..+.+.      .. |..+    .+++-+.++.   ..+.++..|..
T Consensus        12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~   88 (262)
T PF14225_consen   12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSR   88 (262)
T ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHH
Confidence            4677778777777778888877765421  11 111111      11 3333    3444445543   34556666666


Q ss_pred             hcCC-------ChhhhHHHHhCCChHHHHHhhCCCC----hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc
Q 039940           93 IASG-------TSVNTKVLIDHGAVPIFVKLLASPS----DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE  161 (449)
Q Consensus        93 l~~~-------~~~~~~~~~~~~~i~~L~~~l~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  161 (449)
                      +...       +++.+-.+.-.+.+|.++..+.+++    ......++..|+.+|....        ...+..++....+
T Consensus        89 L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~  160 (262)
T PF14225_consen   89 LTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAK  160 (262)
T ss_pred             HhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHh
Confidence            6552       1223333333456788888887766    2334456678888874321        2233344444433


Q ss_pred             cc---cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHH
Q 039940          162 HA---RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGP  238 (449)
Q Consensus       162 ~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  238 (449)
                      ..   ..+....++..+..-..  |.    .....+..+..++.++-+.++..++..|..+...-+-...  ...+++.+
T Consensus       161 ~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlisp  232 (262)
T PF14225_consen  161 GRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISP  232 (262)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHH
Confidence            22   23444444444443221  21    1246677889999888899999999999998866443322  44568889


Q ss_pred             HHHhhCCCCCcchhhHHHHHHHhh
Q 039940          239 LVELLGHPSPSVLIPALRTVGNIV  262 (449)
Q Consensus       239 L~~ll~~~~~~v~~~a~~~l~~l~  262 (449)
                      +.++++++.   ..+|+.++-.+.
T Consensus       233 llrlL~t~~---~~eAL~VLd~~v  253 (262)
T PF14225_consen  233 LLRLLQTDL---WMEALEVLDEIV  253 (262)
T ss_pred             HHHHhCCcc---HHHHHHHHHHHH
Confidence            999997765   445565555443

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=94.61  E-value=6  Score=40.35  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc
Q 039940          251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD  330 (449)
Q Consensus       251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  330 (449)
                      +..+.-+++++|-..+...     ...+|.|++=|....+..+|.+...+++.+|.+..    .+++ ..+|.+-..|.+
T Consensus       948 ra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d-~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen  948 RAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTD-RYIPMIAASLCD 1017 (1529)
T ss_pred             HHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHH-HhhHHHHHHhcC
Confidence            3344445555554433222     13456666666554355666666666666655321    1222 468888888999


Q ss_pred             CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCC-hHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          331 AEFDIKKEAAWAISNATKAGTQEQIKYLVREGC-IKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       331 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~-~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      +++-||+.+...|.++...+   ..   .-.|. +-.++..+-+.+++++.-+-.++..++...+
T Consensus      1018 p~~iVRrqt~ilL~rLLq~~---~v---Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFG---IV---KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred             chHHHHHHHHHHHHHHHhhh---hh---hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999998742   11   12222 2223333345677888888888888776553

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.60  E-value=0.89  Score=36.91  Aligned_cols=142  Identities=19%  Similarity=0.152  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhcCC-Chh----hhHHHHh------C-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhc
Q 039940           82 LQFEAAWVLTNIASG-TSV----NTKVLID------H-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHE  149 (449)
Q Consensus        82 ~~~~a~~~L~~l~~~-~~~----~~~~~~~------~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  149 (449)
                      +|..|+.+|..++.. ++.    +...++-      . .-.+.+--++.++++++|..|+.++..+..+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777764 111    1111211      1 223344445678899999999999999876543221111111


Q ss_pred             C-------------------CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhcCCCHHH
Q 039940          150 E-------------------ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQLIHLDDEEV  208 (449)
Q Consensus       150 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~  208 (449)
                      .                   .-..|+..+....+..+..+.+.++..+...-|-.  .......++..+..++.+.|+++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   11233444545567788889999999999886433  33444667777777888899999


Q ss_pred             HHHHHHHHHHcccCC
Q 039940          209 LRNVCWTLSNLSDGT  223 (449)
Q Consensus       209 ~~~~~~~l~~l~~~~  223 (449)
                      +..++.+++.+....
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999988876543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.59  E-value=0.63  Score=38.21  Aligned_cols=125  Identities=15%  Similarity=0.100  Sum_probs=83.0

Q ss_pred             CCCCCcchhhHHHHHHHhhcCChhhHHHHH----------------hcCCHHHHHHHhccCC-----chhHHHHHHHHHH
Q 039940          244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVI----------------NHGAVPYLLALLINNH-----KKSIKKESCWTVS  302 (449)
Q Consensus       244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~l~~L~~ll~~~~-----~~~v~~~a~~~l~  302 (449)
                      .+++......++..|+|++.... ....++                +...+..|+..+..+.     ...-....+.++.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            34555567778888889887633 333222                1235777777776521     2344566888999


Q ss_pred             HHhcCCHHHHHHHHH--CCC--hHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH---cCChHHHHhhcc
Q 039940          303 NITAGNRKQIQAVID--AGL--IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR---EGCIKPLCDLLL  372 (449)
Q Consensus       303 nl~~~~~~~~~~l~~--~~~--~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---~~~~~~L~~ll~  372 (449)
                      |++. .++.+..+++  .+.  +..|+..+...+..-|.-++.+|.|++-.  .+....+..   .++++.|+--+.
T Consensus        84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhhcc
Confidence            9966 4677878875  344  77888888888888888889999999984  444555554   245555555443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=94.59  E-value=0.87  Score=35.41  Aligned_cols=76  Identities=12%  Similarity=0.047  Sum_probs=64.4

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+..|..-+.++++.++..|+..|-.++.+++..+...+...++++.|..++. ..++.|+.+++..+.........
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            45677777888999999999999999999988888888888899999999987 46778999999999888866543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=94.58  E-value=0.3  Score=38.03  Aligned_cols=76  Identities=7%  Similarity=0.032  Sum_probs=65.9

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+..|..-+.+.++.++..|+..|-.++.+++..+...+...+++..|..++.. .++.|+.+++..+.........
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            455677778888999999999999999999998888888888999999999987 6889999999999988766543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.46  E-value=4.2  Score=37.90  Aligned_cols=187  Identities=13%  Similarity=0.120  Sum_probs=116.0

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhcCCC---hhhhHHHHhCCChHHHHHhhCC-------CChHHHHHHHHHHHHHhcCC
Q 039940           70 FVEFLLREDYPRLQFEAAWVLTNIASGT---SVNTKVLIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNIVAHS  139 (449)
Q Consensus        70 L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~~l~~-------~~~~~~~~a~~~L~~l~~~~  139 (449)
                      +..+++..+ ++-+.+|+....+.+...   ..+++.+.+.=+.+.+-+++.+       ++.-.+.-++.+|..+|+..
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            555666666 688899999999998743   3455667787778888888865       33456677788888888764


Q ss_pred             Cch-hhhHhhcCCHHHHHHHHcccccHH------HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC----HHH
Q 039940          140 PGC-RNLVLHEEALIPLLAQLNEHARLS------MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDD----EEV  208 (449)
Q Consensus       140 ~~~-~~~~~~~~~i~~l~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~----~~~  208 (449)
                      .-. .+.+  -+.||.++..+.+..|++      +...+..+|..++...+........|+++.+.++-.-.+    ..+
T Consensus        95 ElAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            321 1112  246788888886554444      788899999999998777677777899999987765332    322


Q ss_pred             HHHHHHHHH-HcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 039940          209 LRNVCWTLS-NLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV  262 (449)
Q Consensus       209 ~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~  262 (449)
                      ...++.... .+-..+.. ...+.  .++..+..=+...+...+-+.|..|..+.
T Consensus       173 al~Vlll~~~~~~cw~e~-~~~fl--ali~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSET-IERFL--ALIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHHHHHHHHHhcccCcCC-HHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            222222111 11112211 11111  12344444444556667778888887553

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.42  E-value=0.75  Score=37.79  Aligned_cols=122  Identities=12%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHcccCChhHHHHHHH----------------hCcHHHHHHhhCC------CCCcchhhHHHHHHHh
Q 039940          204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIE----------------AGVCGPLVELLGH------PSPSVLIPALRTVGNI  261 (449)
Q Consensus       204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----------------~~~~~~L~~ll~~------~~~~v~~~a~~~l~~l  261 (449)
                      ++......++..|+|+++.+..... +++                ...+..|+..+..      ....-......++.|+
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            3444556677777777765543221 221                2345666666544      2334556678889999


Q ss_pred             hcCChhhHHHHHhc--CC--HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCChHHHHHHhh
Q 039940          262 VTGDDFQTQCVINH--GA--VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID---AGLIVPLVNLLQ  329 (449)
Q Consensus       262 ~~~~~~~~~~~~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll~  329 (449)
                      +.. +..++.+.+.  +.  +..|+..+++. +..-|.-++.+|.|+|...... ..++.   .+++|.|+--+.
T Consensus        86 S~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   86 SQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             cCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            886 6667766643  34  77888888888 7777788999999999854433 34443   356666655554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.30  E-value=0.19  Score=35.62  Aligned_cols=72  Identities=10%  Similarity=0.055  Sum_probs=57.8

Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +...+..+.++.+.+|..++..|.+++...+   ....-..+++..+...++++|+.+...|+.+|..+....+.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            4455667788899999999999999999755   11112245788888899999999999999999999988765

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.13  E-value=0.66  Score=36.99  Aligned_cols=147  Identities=10%  Similarity=0.057  Sum_probs=86.5

Q ss_pred             hhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh
Q 039940          190 VRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  268 (449)
Q Consensus       190 ~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  268 (449)
                      ....++.+..+++++ +..+|..++++++.+..-++...+.+...  .+.-  .-...+......... .......    
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~-~~~~~~~----   78 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLP-MMGISPS----   78 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHh-hccCCCc----
Confidence            467888999999876 58999999999999988777554422111  0100  000111111221111 1111111    


Q ss_pred             HHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          269 TQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       269 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                      .+......++..|+.+|+++.-..-...+..++.++... .......+-  .++|.+++.+...+...++...+-|+.++
T Consensus        79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            223333456788899998774444555677777777641 112232332  48999999998777688887777777665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.03  E-value=2.5  Score=40.03  Aligned_cols=167  Identities=11%  Similarity=0.072  Sum_probs=112.7

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC----cchhhHHHHHHHhhcCChh
Q 039940          192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP----SVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       192 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~----~v~~~a~~~l~~l~~~~~~  267 (449)
                      .....+...+.+++...+..++..+..++... .....++...++..|..++.++..    ++....+.++..+..+.- 
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            34456777777888777777888888887544 455667888889999999987654    455555666655543321 


Q ss_pred             hHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940          268 QTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA  346 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l  346 (449)
                      .........++.....+..-+ .+..+-..|...+-++..+++...+.+.+.--+..|++.+...+..++..|...+..+
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            111111222333333333211 1556777888888888888877777777888899999999999999999988888888


Q ss_pred             hccCCHHHHHHHHH
Q 039940          347 TKAGTQEQIKYLVR  360 (449)
Q Consensus       347 ~~~~~~~~~~~l~~  360 (449)
                      ...+..+.++.+.+
T Consensus       241 ~~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  241 FRKAPDDKRFEMAK  254 (713)
T ss_pred             HhhCChHHHHHHHH
Confidence            88766655554443

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=93.99  E-value=1  Score=33.68  Aligned_cols=74  Identities=16%  Similarity=0.296  Sum_probs=56.0

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHH-HhcchHHHHHHHhcCC--------CHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV-EGAEGFKKIEDLKSHG--------NNGI  433 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~--------~~~i  433 (449)
                      +++.|..-|++.++.|..+++.+|..++..+...            |...+ +....++.+.+....+        +..|
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~V  106 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKV  106 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHH
Confidence            6778888899889999999999999999887542            34333 3334566666665433        3569


Q ss_pred             HHHHHHHHHHhcCCC
Q 039940          434 REKAVTILETYWLKG  448 (449)
Q Consensus       434 ~~~a~~~i~~~~~~~  448 (449)
                      +..|..+++-.|+++
T Consensus       107 R~~A~El~~~if~~~  121 (122)
T cd03572         107 REEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999999876

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.74  E-value=12  Score=40.36  Aligned_cols=73  Identities=12%  Similarity=0.198  Sum_probs=55.8

Q ss_pred             cCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          275 HGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      .+++|.|..-|.+. +..+|..|...++.+......... =-.......++.-+.+.+++||..+.....++...
T Consensus       258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence            46899999999988 999999999999999875433222 01124566677777888899999999888887776

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.62  E-value=4.6  Score=35.26  Aligned_cols=223  Identities=12%  Similarity=0.060  Sum_probs=124.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC--CCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940           27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR--EDYPRLQFEAAWVLTNIASGTSVNTKVL  104 (449)
Q Consensus        27 l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~  104 (449)
                      +=..|.++|+..|..|+..|...+..-....    ....-+..|++.+.+  .+ ......++.++..+..... .....
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~-~~~~~   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKN-FSPES   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC-CChhh
Confidence            4456789999999999999998876532111    111124444444332  23 3444444666666664211 11101


Q ss_pred             HhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          105 IDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       105 ~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                       ...++..+.+...  +-....|..+..++..+.......-. -+..+.+..++..+....||.-...+...+..+....
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF  155 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence             1122333333222  23467788888888888755322111 1133467778888877779988888888888887765


Q ss_pred             CCCChhhhhchHHHHHHhhc-----C-CCH-H-HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhH
Q 039940          183 PQPPFDQVRPVLPALAQLIH-----L-DDE-E-VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA  254 (449)
Q Consensus       183 ~~~~~~~~~~~l~~l~~ll~-----~-~~~-~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a  254 (449)
                      +.  ....+.....+....-     . +|+ . .+...-.+|.+.....+..     ..-.++.+++-|.++.+.++..+
T Consensus       156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~  228 (262)
T PF14500_consen  156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDS  228 (262)
T ss_pred             cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHH
Confidence            42  2222333333332221     1 122 1 1222223333332233322     23568999999999999999999


Q ss_pred             HHHHHHhhcC
Q 039940          255 LRTVGNIVTG  264 (449)
Q Consensus       255 ~~~l~~l~~~  264 (449)
                      +.+|...+..
T Consensus       229 L~tL~~c~~~  238 (262)
T PF14500_consen  229 LQTLKACIEN  238 (262)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.53  E-value=10  Score=42.56  Aligned_cols=200  Identities=11%  Similarity=0.099  Sum_probs=110.1

Q ss_pred             cHHHHHHHHHHHHHhhcCCCC----CChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHH
Q 039940          164 RLSMLRIGTWTLSNLCKGKPQ----PPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGP  238 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  238 (449)
                      +..+..+|+..|..++...-.    ..+.....++..+..++. +.+.+++..++.|+.++......+.    .+ +.+.
T Consensus      1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI----kS-GWkt 1224 (1780)
T PLN03076       1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV----KS-GWKS 1224 (1780)
T ss_pred             chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh----hc-CcHH
Confidence            566777888888887765411    222333567777777665 4578999999999999886544332    33 3455


Q ss_pred             HHHhhC----CCCCcchhhHHHHHHHhhcCChhhH-----HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---
Q 039940          239 LVELLG----HPSPSVLIPALRTVGNIVTGDDFQT-----QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA---  306 (449)
Q Consensus       239 L~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---  306 (449)
                      ++.++.    ..++.+...|..++..++...-...     ..+  ...+..+....+...+.++--.|...|.+++.   
T Consensus      1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076       1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence            555554    4566777778887776664311100     011  12444555555444245555566666665521   


Q ss_pred             -CCH-----------------------HHHHHH-----HHCCChHHHH---HHhhcCchhHHHHHHHHHHHhhccCC---
Q 039940          307 -GNR-----------------------KQIQAV-----IDAGLIVPLV---NLLQDAEFDIKKEAAWAISNATKAGT---  351 (449)
Q Consensus       307 -~~~-----------------------~~~~~l-----~~~~~~~~L~---~ll~~~~~~v~~~a~~aL~~l~~~~~---  351 (449)
                       +..                       +....+     .....+|.|.   ++..+..++||..|+.+|-.+....+   
T Consensus      1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076       1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred             hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence             000                       000000     0012333333   34566789999999999988776532   


Q ss_pred             -HHHHHHHHHcCChHHHHhhc
Q 039940          352 -QEQIKYLVREGCIKPLCDLL  371 (449)
Q Consensus       352 -~~~~~~l~~~~~~~~L~~ll  371 (449)
                       ++....+++ +++-+|.+-+
T Consensus      1383 s~~~W~~if~-~VLFPIFd~l 1402 (1780)
T PLN03076       1383 SLPLWERVFE-SVLFPIFDYV 1402 (1780)
T ss_pred             CHHHHHHHHH-HHHHHHHHHH
Confidence             333333333 3455554443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.34  E-value=0.4  Score=33.99  Aligned_cols=77  Identities=8%  Similarity=0.057  Sum_probs=58.4

Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHH
Q 039940          278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKY  357 (449)
Q Consensus       278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  357 (449)
                      ++..+..+.++ .+.+|..+...|+.+.....  .....-.+++..+...++++++-|-.+|..+|..++.....+....
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            45567777888 88899999999999997543  1112224678889999999999999999999999998743333333

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=93.33  E-value=3.6  Score=36.21  Aligned_cols=159  Identities=19%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC--ChHHHHHhhC----CCChHHHHHHHHHHHHHhcCCC
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG--AVPIFVKLLA----SPSDDVREQAVWALGNIVAHSP  140 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~l~----~~~~~~~~~a~~~L~~l~~~~~  140 (449)
                      ...+...+..-. .+.+.-++..++-++. ++.....+...+  +...+..++.    +..+..+-.++++++|+.... 
T Consensus        65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-  141 (268)
T PF08324_consen   65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-  141 (268)
T ss_dssp             HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-
T ss_pred             HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-
Confidence            455566666655 4667888999888877 455555554443  2444554443    256788888999999997654 


Q ss_pred             chhhhHhhcC--CHHHHHHHHcccc---cHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-C-CCHHHHHH
Q 039940          141 GCRNLVLHEE--ALIPLLAQLNEHA---RLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLIH-L-DDEEVLRN  211 (449)
Q Consensus       141 ~~~~~~~~~~--~i~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~-~-~~~~~~~~  211 (449)
                      ..+..+....  .+...+..+....   +..++..++..+.|++...  ...........+..+...+. . .|++....
T Consensus       142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            4455554322  2333333332332   6888889999999987654  11122233346666777433 2 58999999


Q ss_pred             HHHHHHHcccCChhHHH
Q 039940          212 VCWTLSNLSDGTNDKIQ  228 (449)
Q Consensus       212 ~~~~l~~l~~~~~~~~~  228 (449)
                      ++-+++++...++....
T Consensus       222 ~LvAlGtL~~~~~~~~~  238 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAKQ  238 (268)
T ss_dssp             HHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHHhccChhHHH
Confidence            99999999966654433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.29  E-value=8.1  Score=37.16  Aligned_cols=109  Identities=23%  Similarity=0.279  Sum_probs=78.3

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      .-.+.+..+++.+.+.|..++..++..|+.+..-  -..++...-+|.+..|.+-+-+.. +.++.+|+.+|+.+-....
T Consensus        88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccC
Confidence            3356677888888899999999999999888643  455667777888888887777777 7999999999998876322


Q ss_pred             hhhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcC
Q 039940           99 VNTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAH  138 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~  138 (449)
                      .....     ....|...++ +++.++|..|   +.|+.-+
T Consensus       165 neen~-----~~n~l~~~vqnDPS~EVRr~a---llni~vd  197 (885)
T COG5218         165 NEENR-----IVNLLKDIVQNDPSDEVRRLA---LLNISVD  197 (885)
T ss_pred             ChHHH-----HHHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence            22222     2456666665 4778999855   4555433

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=93.25  E-value=1.8  Score=33.31  Aligned_cols=76  Identities=8%  Similarity=-0.048  Sum_probs=63.6

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC---ADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+..|..-+.++++.++..|+..|-.++.++...+...+.....+..|..++..   .++.++.+++..+.........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            456777778889999999999999999999888787777777788889998875   4778999999999988876654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.22  E-value=1.6  Score=35.83  Aligned_cols=109  Identities=11%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             CHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhc---------CchhHHHHHHHHHHHh
Q 039940          277 AVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQD---------AEFDIKKEAAWAISNA  346 (449)
Q Consensus       277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~---------~~~~v~~~a~~aL~~l  346 (449)
                      -...+++.+.+. ....  .....|.-..+ .+..-+..+++.|++..|+++|..         .+......++.|+..+
T Consensus        67 ~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            344555666544 2211  22222322222 445667778888888888888754         2457888899999999


Q ss_pred             hccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940          347 TKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       347 ~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~  390 (449)
                      +..  ......++. .+++..|...+.+++..++..++++|..++
T Consensus       144 ~n~--~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNT--KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSS--HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             Hcc--HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            874  455666665 688999999999999999999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=93.10  E-value=4.6  Score=40.57  Aligned_cols=158  Identities=17%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ..|..++..|.|.+..+...+-..+....... .+++       ++..|++..-+...    ..|+.+|..+-.  |..+
T Consensus         4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K   69 (668)
T PF04388_consen    4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK   69 (668)
T ss_pred             ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence            35778999999999999998888888776543 2221       26667776555443    556667765533  2111


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                            .++..|-.++..  +..|..++..|+.+....|.....+.+...+..|+++|..+.+..+...|+.+|..|.=.
T Consensus        70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~  141 (668)
T PF04388_consen   70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH  141 (668)
T ss_pred             ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence                  234566666664  567778999999999988887788889999999999998888999999998888877766


Q ss_pred             CCCCChhhhhchHHHHHHhh
Q 039940          182 KPQPPFDQVRPVLPALAQLI  201 (449)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~ll  201 (449)
                      .|.........++.+..+++
T Consensus       142 ip~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  142 IPSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             ccchhhHHHHHHHHHHHHHH
Confidence            55444444445555555554

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=93.07  E-value=2.5  Score=32.50  Aligned_cols=75  Identities=11%  Similarity=0.012  Sum_probs=62.2

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD--PEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~~  394 (449)
                      ++..|..-+.++++.++..|+..|-.++..+...+...+...+++..|..++....  +.++.+++..+........
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            45567777888999999999999999999988888888888889999999988643  3488999988887776553

Unpublished observations. Domain of unknown function.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.04  E-value=6.6  Score=41.74  Aligned_cols=245  Identities=17%  Similarity=0.127  Sum_probs=127.5

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc---c---ccHHHHHHHHHHHHHhhcCC-CCCChhhhh
Q 039940          119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE---H---ARLSMLRIGTWTLSNLCKGK-PQPPFDQVR  191 (449)
Q Consensus       119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~---~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~  191 (449)
                      .+..+++...+.++.++.....+   ..+ .| .+.+++++..   .   ....+.+.+..++.-++.+. +........
T Consensus       853 ~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~  927 (1610)
T KOG1848|consen  853 SRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL  927 (1610)
T ss_pred             CccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence            45567777778888887654322   221 22 4455555531   1   13567788888888888887 677777888


Q ss_pred             chHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChh----HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940          192 PVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTND----KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD  266 (449)
Q Consensus       192 ~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  266 (449)
                      ++++.+....+. .|.++--.++..+++++..-..    ..+....+..++.+..  ..+...+..+++|.+        
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~--------  997 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIM--------  997 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHH--------
Confidence            889988888765 4677766666666655422110    0111111223333333  223334444555543        


Q ss_pred             hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhc-------C--chhH-
Q 039940          267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQD-------A--EFDI-  335 (449)
Q Consensus       267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~-------~--~~~v-  335 (449)
                                ++..|.++..++ ..+||..|+.++-.+.. +........+..-+...++.+|..       +  ..++ 
T Consensus       998 ----------ll~~L~~~~~ds-r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiq 1066 (1610)
T KOG1848|consen  998 ----------LLVHLADLCEDS-RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQ 1066 (1610)
T ss_pred             ----------HHHHHHHHhccc-hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHh
Confidence                      223344444555 66677777766666653 222222222222233344444441       1  1222 


Q ss_pred             ------HHHHHHHHHHhhccCCHHHHHHHHHc-C-------ChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          336 ------KKEAAWAISNATKAGTQEQIKYLVRE-G-------CIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       336 ------~~~a~~aL~~l~~~~~~~~~~~l~~~-~-------~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                            -.-.+.++..+.    +++.+.+... |       ++..+.++..+.++++...++.++..+....
T Consensus      1067 kqwtet~~ltisgIaklf----~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1067 KQWTETSCLTISGIAKLF----SENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred             hhhhhhhhhhHHHHHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence                  222233333333    3455555442 2       2344444555678888888888877766433

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.98  E-value=7  Score=35.59  Aligned_cols=164  Identities=15%  Similarity=0.168  Sum_probs=117.1

Q ss_pred             HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHC-C-ChHHHHHHhhcC-----c--------hh
Q 039940          271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDA-G-LIVPLVNLLQDA-----E--------FD  334 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~-~-~~~~L~~ll~~~-----~--------~~  334 (449)
                      .+++.. ++.+...|.+. ...+...+...+..++. ........+.+. + -.+.+-+++...     +        +.
T Consensus        52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s  129 (330)
T PF11707_consen   52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS  129 (330)
T ss_pred             HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence            344333 88889999988 78888899999999998 666666666642 2 234455555321     1        28


Q ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHH
Q 039940          335 IKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV  413 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  413 (449)
                      +|...+..+..+...+++...+.+.+ .+.+..+..-+..+++++....+..+..-+-.++.....        .-...|
T Consensus       130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~f  201 (330)
T PF11707_consen  130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLF  201 (330)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhc
Confidence            99999988888888888888887776 567888888898888899999999988655444433221        113333


Q ss_pred             HhcchHHHHHHHhcCCCH----HHHHHHHHHHHHhc
Q 039940          414 EGAEGFKKIEDLKSHGNN----GIREKAVTILETYW  445 (449)
Q Consensus       414 ~~~~~~~~l~~l~~~~~~----~i~~~a~~~i~~~~  445 (449)
                       ....+..|..+-+..++    .+.+.+...+..+.
T Consensus       202 -n~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lc  236 (330)
T PF11707_consen  202 -NEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALC  236 (330)
T ss_pred             -CHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHh
Confidence             44467888888888877    88888888887744

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=92.88  E-value=1.2  Score=31.86  Aligned_cols=70  Identities=16%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 039940          360 REGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVT  439 (449)
Q Consensus       360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~  439 (449)
                      ....+..|+..+..+.......++..+..+.+....              ...+...|+.+-+.++...-+++.+.....
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~   93 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE   93 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence            455788888888888888889999999998876543              678889999999999999999999999888


Q ss_pred             HHHH
Q 039940          440 ILET  443 (449)
Q Consensus       440 ~i~~  443 (449)
                      +++.
T Consensus        94 il~~   97 (98)
T PF14726_consen   94 ILDQ   97 (98)
T ss_pred             HHhc
Confidence            8864

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.72  E-value=5.5  Score=40.06  Aligned_cols=163  Identities=18%  Similarity=0.131  Sum_probs=95.4

Q ss_pred             hHHHHHhhCC----CChHHHHHHHHHHHHHhc----CC-----CchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHH
Q 039940          110 VPIFVKLLAS----PSDDVREQAVWALGNIVA----HS-----PGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTW  173 (449)
Q Consensus       110 i~~L~~~l~~----~~~~~~~~a~~~L~~l~~----~~-----~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~  173 (449)
                      +..+..++.+    .++.++..|+-+++.+..    ..     ............++.+...+.   ...+.+-+..++.
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  512 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK  512 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence            5556666654    456788888888877753    21     001111223345666766664   3445677888899


Q ss_pred             HHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCC
Q 039940          174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSP  248 (449)
Q Consensus       174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~  248 (449)
                      +|+|+-..          ..++.+...+...   +..+|..|++++..+....+...        .+.+.++..+  .+.
T Consensus       513 aLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~  574 (618)
T PF01347_consen  513 ALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDP  574 (618)
T ss_dssp             HHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-H
T ss_pred             HhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCCh
Confidence            99998643          6788888888765   67889999999998876666433        3556666655  356


Q ss_pred             cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHH
Q 039940          249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT  300 (449)
Q Consensus       249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  300 (449)
                      ++|..|+..|...   ++..       ..+..+...+....+.+|.......
T Consensus       575 EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~  616 (618)
T PF01347_consen  575 EVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVYSH  616 (618)
T ss_dssp             HHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence            6888887666332   1221       2455677777666566666554433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=92.71  E-value=13  Score=38.09  Aligned_cols=146  Identities=14%  Similarity=0.179  Sum_probs=98.2

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH
Q 039940           35 DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV  114 (449)
Q Consensus        35 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  114 (449)
                      .+.++..+...|.+++-.. ....     ...+|.|++-|...+...++.+.+-+++.+|.....     .-...+|.+.
T Consensus       944 ~~~vra~~vvTlakmcLah-~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~ 1012 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCLAH-DRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIA 1012 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhh-hHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHH
Confidence            3567777888888887543 2222     235899999888777567888888788888763222     2224589999


Q ss_pred             HhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcC--CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhc
Q 039940          115 KLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEE--ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP  192 (449)
Q Consensus       115 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  192 (449)
                      ..|.++++-+|.+++-.|.+|....     .+.=.|  ++..++.++  +.++.++..|=.+++.+.....  .......
T Consensus      1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~~--P~~f~~~ 1083 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSEE--PNFFPLN 1083 (1529)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhcC--ccchHHH
Confidence            9999999999999999999997543     111112  244455555  5678899999999998877641  1222234


Q ss_pred             hHHHHHHh
Q 039940          193 VLPALAQL  200 (449)
Q Consensus       193 ~l~~l~~l  200 (449)
                      ++..+..+
T Consensus      1084 FVe~i~~l 1091 (1529)
T KOG0413|consen 1084 FVEYIIAL 1091 (1529)
T ss_pred             HHHHHHHH
Confidence            55555544

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.48  E-value=1.2  Score=35.68  Aligned_cols=114  Identities=15%  Similarity=0.197  Sum_probs=76.7

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC---C
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA--GIVPRFVEFLLREDYPRLQFEAAWVLTNIAS---G   96 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~   96 (449)
                      ..+..+.++|+|.++..+..++..+...+...   ..+.+.+.  ..+..++..|+.++...+...++.++..+..   +
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~---~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC---SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34567788889999999999988888776432   24444333  3477888899988877888888888887764   4


Q ss_pred             ChhhhHHHHhC---CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC
Q 039940           97 TSVNTKVLIDH---GAVPIFVKLLASPSDDVREQAVWALGNIVAHSP  140 (449)
Q Consensus        97 ~~~~~~~~~~~---~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  140 (449)
                      .++..+.+...   ++++.++++++.  ......++.+|..+....|
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            45555555433   344444444443  5667778888888775443

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=92.38  E-value=1.3  Score=34.37  Aligned_cols=75  Identities=11%  Similarity=0.037  Sum_probs=60.4

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHH---HHHHHHHHHHHHHHhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPE---IVTVCLKGLENILKVGE  394 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~---~~~~~~~~l~~l~~~~~  394 (449)
                      ++..|..-+.+.++.++..|+..|-.++.+++..+...+....++..|..++.+. ...   |+.+++..+........
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~  121 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK  121 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence            4557777888899999999999999999998777777777777888999988753 333   88999988887776663

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.34  E-value=1.4  Score=35.43  Aligned_cols=112  Identities=17%  Similarity=0.166  Sum_probs=78.1

Q ss_pred             CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---CC
Q 039940          234 GVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN--HGAVPYLLALLINNHKKSIKKESCWTVSNITA---GN  308 (449)
Q Consensus       234 ~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~  308 (449)
                      .....+..+++++++.-|..++..+...+..++.  +.+.+  ...+..++.+++.+..+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4567788899999998999898888888776532  22222  34678889999887567788899999988874   45


Q ss_pred             HHHHHHHHHC---CChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          309 RKQIQAVIDA---GLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       309 ~~~~~~l~~~---~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      ++...++...   ++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            5544444432   345555555554  57777788888887775

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.30  E-value=7.9  Score=37.80  Aligned_cols=289  Identities=13%  Similarity=0.139  Sum_probs=146.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      ++..+=+.+.+++..+..-|+-.+.-..++.+++ .     ..++-.|.+.+++++ ..++..|+..|+-...++  .++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            5666666777777766666654443333332111 1     122445667777777 678888888777665532  233


Q ss_pred             HHHhCCChHHHHHhhCCCC--hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          103 VLIDHGAVPIFVKLLASPS--DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      .+.     ..|..++.+.+  .++...|...|+.+..++..  ..+ ....+..+++.-.........+.....|.-+..
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            332     25566666544  45666666666666544321  111 112333444332211223333444334444333


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC---cchhhHHHH
Q 039940          181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP---SVLIPALRT  257 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~---~v~~~a~~~  257 (449)
                      ...        ..+...+.-+..-+..++..+-..+...+.....+.-.+ +.   ..+..+-..+..   .-...|+--
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~I-q~---q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKI-QS---QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEe-ch---hhhhhhcCCCccchhhhccchhhh
Confidence            321        122222222222222232222222211111111110000 00   222222222211   112234444


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK  337 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  337 (449)
                      ++-++.+.+-..++     .+..+-.+|..+ ++.+|+..-.+++-++..+|..       +++..|-+..++.+.++..
T Consensus       627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            44455553333332     455677788888 8899999999999888777653       4788888888888999999


Q ss_pred             HHHHHHHHhhccCCHH
Q 039940          338 EAAWAISNATKAGTQE  353 (449)
Q Consensus       338 ~a~~aL~~l~~~~~~~  353 (449)
                      +++.+++-+-.+.+..
T Consensus       694 naIfamGLiGAGTnNA  709 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTNNA  709 (878)
T ss_pred             HHHHHhccccCCcchH
Confidence            9999998887765433

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.30  E-value=0.91  Score=37.48  Aligned_cols=146  Identities=16%  Similarity=0.208  Sum_probs=87.6

Q ss_pred             CCHHHHH-HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHhcC-CChhhhHHHHhC
Q 039940           34 DDNSMQL-EAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----EDYPRLQFEAAWVLTNIAS-GTSVNTKVLIDH  107 (449)
Q Consensus        34 ~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~  107 (449)
                      +...-|. .|+..|.-++++  .+....+++..+--.+...|..    ...+-++..++.+++.+.. ++++....+...
T Consensus       111 ~~~snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT  188 (315)
T COG5209         111 ERESNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT  188 (315)
T ss_pred             chhhhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence            3444444 455556566654  4555555565543333333332    2235678899999999997 455666777778


Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-------hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL-------HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      .++|..++.+..+++--+.-++.++..+..++....-...       -...+..++..+-+.....+.+.+.++-..+|.
T Consensus       189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            9999999999999988888899999988776643322111       111222223333233344555555555555555


Q ss_pred             C
Q 039940          181 G  181 (449)
Q Consensus       181 ~  181 (449)
                      .
T Consensus       269 ~  269 (315)
T COG5209         269 K  269 (315)
T ss_pred             C
Confidence            4

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.00  E-value=11  Score=35.39  Aligned_cols=191  Identities=16%  Similarity=0.190  Sum_probs=117.8

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCCC---chhhhHhhcCCHHHHHHHHcc------cccHHHHHHHHHHHHHhhcCC
Q 039940          112 IFVKLLASPSDDVREQAVWALGNIVAHSP---GCRNLVLHEEALIPLLAQLNE------HARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       112 ~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~------~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      -+..+....+++-+-.++.....++....   ..++.+.+.-+++.+-.++..      +++.-.+..++..|..+|+.+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35666777777888888888888886543   235556666566555555532      233334566778888999987


Q ss_pred             CCCChhhhhchHHHHHHhhcCC-CHH------HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh-H
Q 039940          183 PQPPFDQVRPVLPALAQLIHLD-DEE------VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP-A  254 (449)
Q Consensus       183 ~~~~~~~~~~~l~~l~~ll~~~-~~~------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~-a  254 (449)
                      .-......-.-+|.+...+... |++      ....+..|+..++..... ...++..|.++.+.++-.-++...-.. +
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            5555555567788888888743 222      677888999998877554 456888899999997765554433322 3


Q ss_pred             HHHHHHhhcCC---hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          255 LRTVGNIVTGD---DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       255 ~~~l~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      +.++--...+.   ++....+..  ++..+..=+... +...+-+.|..|..+..
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence            33332222221   111122211  233344444444 56678889999986654

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=91.97  E-value=3.8  Score=30.72  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=61.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHc-CChHHHHhhccCCC--
Q 039940          299 WTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVRE-GCIKPLCDLLLCAD--  375 (449)
Q Consensus       299 ~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~--  375 (449)
                      .-|++++..++.....     ++..|.+-|++.++.|+..++..|..++..|+++++..+.+. ..+..+...-...|  
T Consensus        23 ~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~   97 (122)
T cd03572          23 EEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPL   97 (122)
T ss_pred             HHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcc
Confidence            3455555555443332     566888889989999999999999999999988888777653 33444444433222  


Q ss_pred             ------HHHHHHHHHHHHHHHHh
Q 039940          376 ------PEIVTVCLKGLENILKV  392 (449)
Q Consensus       376 ------~~~~~~~~~~l~~l~~~  392 (449)
                            ..||..|-+++..++..
T Consensus        98 ~Gd~~~~~VR~~A~El~~~if~~  120 (122)
T cd03572          98 KGDSLNEKVREEAQELIKAIFSY  120 (122)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcc
Confidence                  34788888888877753

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.78  E-value=8.9  Score=38.14  Aligned_cols=135  Identities=15%  Similarity=0.152  Sum_probs=81.4

Q ss_pred             chHHHHHHhhcCC----CHHHHHHHHHHHHHccc----CChhHHHHHHHhCcHHHHHHhhC----CCCCcchhhHHHHHH
Q 039940          192 PVLPALAQLIHLD----DEEVLRNVCWTLSNLSD----GTNDKIQAVIEAGVCGPLVELLG----HPSPSVLIPALRTVG  259 (449)
Q Consensus       192 ~~l~~l~~ll~~~----~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~l~  259 (449)
                      ..+..+..++.++    .+.++..++-+++.+..    ..+.....+. ..+++.+...+.    ..+.+.+...+.+|+
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            5566677777643    46677777777776653    2211001111 235555555443    345556778899999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhH
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLI--NNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDI  335 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v  335 (449)
                      |+....           .++.+...+.  ...+..+|..|+++|..++...+..        +-+.++.++.+.  ++++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            987532           2334444443  1125679999999999997655443        344566666554  7889


Q ss_pred             HHHHHHHHHHh
Q 039940          336 KKEAAWAISNA  346 (449)
Q Consensus       336 ~~~a~~aL~~l  346 (449)
                      |..|..+|...
T Consensus       533 RiaA~~~lm~t  543 (574)
T smart00638      533 RMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHhc
Confidence            98887776654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.32  E-value=0.88  Score=35.38  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=61.8

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~   95 (449)
                      .+++..+.+.|++.++.++..|+..|-.+....+......+...+++..|++++.....+.++..++..+...+.
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            467788888899999999999999998887765556667777889999999999865447899999988887765

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.31  E-value=12  Score=34.61  Aligned_cols=147  Identities=12%  Similarity=0.075  Sum_probs=88.6

Q ss_pred             HHHhCcHHHHHHhhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc----cC-CchhHHHHHHHHHHH
Q 039940          230 VIEAGVCGPLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI----NN-HKKSIKKESCWTVSN  303 (449)
Q Consensus       230 ~~~~~~~~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~----~~-~~~~v~~~a~~~l~n  303 (449)
                      +.+.+-.+.+-.-+...+. .-|..|+..+..++.........++    ...+-.++.    ++ .+..-+..|+..++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            5666666777766665443 4566788888888865433322222    223333332    22 266778889999999


Q ss_pred             HhcCCHH------------HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940          304 ITAGNRK------------QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL  371 (449)
Q Consensus       304 l~~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll  371 (449)
                      ++.....            ....+....++|.|. --.+..+-++..|++.+..+-..-+++...     ++++.++..|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-----~~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-----QIFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-----HHHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHh
Confidence            9863211            234555556777765 222346789999999999887765544332     2789999999


Q ss_pred             cCCCHHHHHHHHHHH
Q 039940          372 LCADPEIVTVCLKGL  386 (449)
Q Consensus       372 ~~~~~~~~~~~~~~l  386 (449)
                      .+++.-+...|..++
T Consensus       356 ~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TSS-HHHHHHHHHHH
T ss_pred             CCCCcchhhhhhhhC
Confidence            999988877766553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.28  E-value=0.97  Score=37.34  Aligned_cols=138  Identities=7%  Similarity=0.121  Sum_probs=89.7

Q ss_pred             hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHH
Q 039940          253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN----NHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNL  327 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~l  327 (449)
                      .|+..+..++++ ++.+..++++.+--.+...|..    .....+|..+.++++.+.. ++++.+..+....++|..+++
T Consensus       119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            455555555554 6666666666554444555432    2245688899999999987 677888888889999999999


Q ss_pred             hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH--------cCChHHHHh-hccCCCHHHHHHHHHHHHHHHHhh
Q 039940          328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR--------EGCIKPLCD-LLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~~~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      +..++.--+..|+..+..+...  ....+++.+        ..++..+.. +.+.....+.+.++.+.-+++...
T Consensus       198 me~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p  270 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP  270 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence            9999888888888888888764  333333332        112222222 233455667777777766655443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.25  E-value=1.6  Score=34.02  Aligned_cols=70  Identities=16%  Similarity=0.276  Sum_probs=59.0

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTIL  441 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i  441 (449)
                      ++..|..-+.+.++.++..++.+|..+++.+..            .|...+-..+.++.|..+... .++.|++++..++
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~------------~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK------------RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH------------HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            566777778889999999999999999998876            367777778888999998666 7889999999999


Q ss_pred             HHh
Q 039940          442 ETY  444 (449)
Q Consensus       442 ~~~  444 (449)
                      +..
T Consensus       106 ~~W  108 (144)
T cd03568         106 KQW  108 (144)
T ss_pred             HHH
Confidence            874

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.78  E-value=4.1  Score=40.95  Aligned_cols=164  Identities=12%  Similarity=0.135  Sum_probs=90.2

Q ss_pred             chHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhH---------HHHHHHhCcHHHHHHhhC----CCCCcchhhH
Q 039940          192 PVLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDK---------IQAVIEAGVCGPLVELLG----HPSPSVLIPA  254 (449)
Q Consensus       192 ~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~---------~~~~~~~~~~~~L~~ll~----~~~~~v~~~a  254 (449)
                      ..+..+..++..    +++.++..++.+++.+....-..         ........+++.+...+.    ..+.+-+..+
T Consensus       431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  510 (618)
T PF01347_consen  431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY  510 (618)
T ss_dssp             HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            445555555553    35677777777777765321000         011112245566665554    3555677888


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-
Q 039940          255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-  331 (449)
Q Consensus       255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-  331 (449)
                      +.+|+|+...           ..++.+...+...  ....+|..|++++..++...++.        +.+.++.++.+. 
T Consensus       511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~  571 (618)
T PF01347_consen  511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT  571 (618)
T ss_dssp             HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred             HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence            9999998642           2455666666543  26789999999999997766653        345666777654 


Q ss_pred             -chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHH
Q 039940          332 -EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKG  385 (449)
Q Consensus       332 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~  385 (449)
                       ++++|..|...|...  ..+..         .+..|...+.. ++.++...+...
T Consensus       572 e~~EvRiaA~~~lm~~--~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~  616 (618)
T PF01347_consen  572 EDPEVRIAAYLILMRC--NPSPS---------VLQRIAQSLWNEPSNQVASFVYSH  616 (618)
T ss_dssp             S-HHHHHHHHHHHHHT-----HH---------HHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHhc--CCCHH---------HHHHHHHHHhhCchHHHHHHHHHh
Confidence             778888887666553  11222         24445555543 456665554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=90.64  E-value=8.6  Score=37.34  Aligned_cols=220  Identities=13%  Similarity=0.032  Sum_probs=119.3

Q ss_pred             CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC--C---------CCCcchhhHHHHHHHhhcCChhhHHH
Q 039940          203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG--H---------PSPSVLIPALRTVGNIVTGDDFQTQC  271 (449)
Q Consensus       203 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~---------~~~~v~~~a~~~l~~l~~~~~~~~~~  271 (449)
                      +++.++...+-..|..+...-+       +..++..|+.+..  .         .++.++...+..|..-..      ..
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa  314 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AA  314 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HH
Confidence            3456666666666766654411       1234555555544  2         223344444444433210      00


Q ss_pred             HHhcCCHHHHHHHhccC-CchhHHHHHHHHH---HHHhcC-CHHHH---HHHHHCCChHHHHH----HhhcCchhHHHHH
Q 039940          272 VINHGAVPYLLALLINN-HKKSIKKESCWTV---SNITAG-NRKQI---QAVIDAGLIVPLVN----LLQDAEFDIKKEA  339 (449)
Q Consensus       272 ~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l---~nl~~~-~~~~~---~~l~~~~~~~~L~~----ll~~~~~~v~~~a  339 (449)
                      -.....+..+...+.+. .+.+++..+...+   .....+ .+..+   ...+..++.|.+-.    --...+...|..+
T Consensus       315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a  394 (501)
T PF13001_consen  315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA  394 (501)
T ss_pred             hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence            01122333333344332 1456677776666   555443 33322   23334555555510    1123478899999


Q ss_pred             HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940          340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF  419 (449)
Q Consensus       340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (449)
                      ..+|+.++.....-..+   +-+++..|.+-+..++++++...-++|..+..........       .....   .....
T Consensus       395 Ye~lG~L~~~~p~l~~~---d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-------~~~~~---~~~~~  461 (501)
T PF13001_consen  395 YETLGLLAKRAPSLFSK---DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-------EDEQK---RLLLE  461 (501)
T ss_pred             HHHHHHHHccCcccccc---cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-------hhHHH---HHHHH
Confidence            99999999974322111   2456888888888889999999999998888776553210       00000   00011


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          420 KKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       420 ~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      ..+.....+.....+..|.+-.+++|+.+
T Consensus       462 ~l~~~~~~~~~~~~R~~avk~an~~fpf~  490 (501)
T PF13001_consen  462 LLLLSYIQSEVRSCRYAAVKYANACFPFS  490 (501)
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHhCCcc
Confidence            12233344556678999999999999875

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.52  E-value=2.3  Score=32.88  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=57.2

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC------CCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH------GNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~i~~~  436 (449)
                      ++..|..-+.++++.+...|+.+|..+++.+..            .|...+-..+.++.+..+...      ..+.|+++
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~------------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k  106 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE------------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK  106 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            567777888899999999999999999998765            367777778888888888642      56889999


Q ss_pred             HHHHHHHh
Q 039940          437 AVTILETY  444 (449)
Q Consensus       437 a~~~i~~~  444 (449)
                      +..+++..
T Consensus       107 il~li~~W  114 (139)
T cd03567         107 IIELLYSW  114 (139)
T ss_pred             HHHHHHHH
Confidence            99998763

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=90.06  E-value=1.4  Score=37.03  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcCCChhhhHHHHhCCC-------hHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCch-hhhHhhcCC
Q 039940           81 RLQFEAAWVLTNIASGTSVNTKVLIDHGA-------VPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGC-RNLVLHEEA  151 (449)
Q Consensus        81 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~  151 (449)
                      .=|..|+++|++++- .+.+.+.+...+-       +..|..++. .++.-.|+.|+..|.+++..+... +....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            457899999999998 5667777666553       345555554 477999999999999999877554 455567888


Q ss_pred             HHHHHHHHcc
Q 039940          152 LIPLLAQLNE  161 (449)
Q Consensus       152 i~~l~~~l~~  161 (449)
                      +..|+.++.+
T Consensus       218 i~~Li~FiE~  227 (257)
T PF12031_consen  218 ISHLIAFIED  227 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999943

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.84  E-value=15  Score=37.30  Aligned_cols=317  Identities=13%  Similarity=0.087  Sum_probs=157.2

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHh------C
Q 039940           34 DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLID------H  107 (449)
Q Consensus        34 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~  107 (449)
                      +|..+...+...|+.++.+  ......++..|++..|+..   +...+...-...||..+.. .....+.+..      .
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            4555667788888888765  5667778888888776655   3322333344456666665 3333333221      2


Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc-------cc-----------cHHHHH
Q 039940          108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE-------HA-----------RLSMLR  169 (449)
Q Consensus       108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------~~-----------~~~~~~  169 (449)
                      .++..-+.+|......-+.++...++.-... -..-+.+-....++.|+.++..       ++           +.+...
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            3455556666654333333333222211000 0111222234456666665521       11           112333


Q ss_pred             HHHHHHHHhhcCC-----CC-CChhhhhchHHHHHHhhcCCC------HHHHHHHHHHHHHcccCCh-------hHHHHH
Q 039940          170 IGTWTLSNLCKGK-----PQ-PPFDQVRPVLPALAQLIHLDD------EEVLRNVCWTLSNLSDGTN-------DKIQAV  230 (449)
Q Consensus       170 ~a~~~l~~l~~~~-----~~-~~~~~~~~~l~~l~~ll~~~~------~~~~~~~~~~l~~l~~~~~-------~~~~~~  230 (449)
                      ..|.++.......     .. .+.....+..+..++-+...+      .+..+.++|-+-.+....+       ...+.+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            4455554322221     00 111111222222222222111      1223333333333222222       224456


Q ss_pred             HHhCcHHHHHHhhCCC-C-------CcchhhHHHHHHHhhcCChhhHHHHHh--------cCCHHHHHHHhcc---CCch
Q 039940          231 IEAGVCGPLVELLGHP-S-------PSVLIPALRTVGNIVTGDDFQTQCVIN--------HGAVPYLLALLIN---NHKK  291 (449)
Q Consensus       231 ~~~~~~~~L~~ll~~~-~-------~~v~~~a~~~l~~l~~~~~~~~~~~~~--------~~~l~~L~~ll~~---~~~~  291 (449)
                      .+.+++..++.+...+ +       .+....|+.+|..+..- +.....+..        ..++..++..-.-   -.|+
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            6677888888877642 2       23455666666655554 332222221        1233333332211   1278


Q ss_pred             hHHHHHHHHHHHHhcCCHHH-----------------------------------HHHHHHCCChHHHHHHhhcCc----
Q 039940          292 SIKKESCWTVSNITAGNRKQ-----------------------------------IQAVIDAGLIVPLVNLLQDAE----  332 (449)
Q Consensus       292 ~v~~~a~~~l~nl~~~~~~~-----------------------------------~~~l~~~~~~~~L~~ll~~~~----  332 (449)
                      +++..|..+|.|+....|+.                                   ...+...+++..|+++++...    
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence            99999999999987643211                                   111224678999999998763    


Q ss_pred             -hhHHHHHHHHHHHhhccCCHHHHHHHHH
Q 039940          333 -FDIKKEAAWAISNATKAGTQEQIKYLVR  360 (449)
Q Consensus       333 -~~v~~~a~~aL~~l~~~~~~~~~~~l~~  360 (449)
                       ..+|.-|+.+|.-++.+  +..++.+..
T Consensus       757 aD~IRalAc~~L~GLaR~--~tVrQIltK  783 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGLARD--DTVRQILTK  783 (1516)
T ss_pred             HHHHHHHHHHHHhccccC--cHHHHHHHh
Confidence             46899999999999985  455554443

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=89.71  E-value=3.8  Score=36.34  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh----cc--------CCCHHHHHHHHHHHH
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL----LL--------CADPEIVTVCLKGLE  387 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l----l~--------~~~~~~~~~~~~~l~  387 (449)
                      ++|.++.++++.++++|..++.+|..+........-..+.+.|..+.+.+.    +.        .+...+...+..++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            789999999999999999999999999987544442335566765544443    33        344567888899999


Q ss_pred             HHHHhhh
Q 039940          388 NILKVGE  394 (449)
Q Consensus       388 ~l~~~~~  394 (449)
                      .++....
T Consensus       200 ~L~~~~~  206 (282)
T PF10521_consen  200 SLLKTQE  206 (282)
T ss_pred             HHHHhhc
Confidence            8887643

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.67  E-value=1.5  Score=33.69  Aligned_cols=75  Identities=11%  Similarity=-0.006  Sum_probs=59.5

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHhcC
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-LQFEAAWVLTNIAS   95 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-~~~~a~~~L~~l~~   95 (449)
                      .+++..+.+.|++.++.+++.|+..|-.+....+......+...+++..|..++.+..... ++..++..+...+.
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            4567778888889999999999999988887655566677778889999999988865434 88888888777664

Unpublished observations. Domain of unknown function.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=89.47  E-value=8  Score=37.55  Aligned_cols=159  Identities=12%  Similarity=0.002  Sum_probs=91.7

Q ss_pred             CcHHHHHHhhCCC--CCcchhhHHHHH---HHhhcCChh-hHH---HHHhcCCHHHHHH----HhccCCchhHHHHHHHH
Q 039940          234 GVCGPLVELLGHP--SPSVLIPALRTV---GNIVTGDDF-QTQ---CVINHGAVPYLLA----LLINNHKKSIKKESCWT  300 (449)
Q Consensus       234 ~~~~~L~~ll~~~--~~~v~~~a~~~l---~~l~~~~~~-~~~---~~~~~~~l~~L~~----ll~~~~~~~v~~~a~~~  300 (449)
                      ..+..+...+.++  +..++..++..+   .....+... ...   ..+..++.+.+-.    --... +...|..+..+
T Consensus       319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~-~~~lR~~aYe~  397 (501)
T PF13001_consen  319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSE-DIELRSLAYET  397 (501)
T ss_pred             cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcc-cHHHHHHHHHH
Confidence            3344445555555  567777777777   555444332 222   2234455554410    01122 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH-HHHHHcCChHHHHh-hccCCCHHH
Q 039940          301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI-KYLVREGCIKPLCD-LLLCADPEI  378 (449)
Q Consensus       301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~~~~L~~-ll~~~~~~~  378 (449)
                      |+.++...+....  -+.+++..|.+.|..+.++++...-.||..++.+-....- ........+..+.. ...+....+
T Consensus       398 lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  475 (501)
T PF13001_consen  398 LGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSC  475 (501)
T ss_pred             HHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHH
Confidence            9999987765431  1345788888989888999999999999988875211000 00001111222222 222345567


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 039940          379 VTVCLKGLENILKVGEA  395 (449)
Q Consensus       379 ~~~~~~~l~~l~~~~~~  395 (449)
                      |..|++....++.+.+-
T Consensus       476 R~~avk~an~~fpf~d~  492 (501)
T PF13001_consen  476 RYAAVKYANACFPFSDV  492 (501)
T ss_pred             HHHHHHHHHHhCCccch
Confidence            88888777777765543

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.37  E-value=36  Score=36.95  Aligned_cols=148  Identities=15%  Similarity=0.127  Sum_probs=92.6

Q ss_pred             CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 039940          234 GVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ  313 (449)
Q Consensus       234 ~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~  313 (449)
                      +++|.|..-|...+..+|..|...+|.+....+.... -.....+...+.-+.+. +..||.++.....++...+++...
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889999889999999999999999999876443221 01223455556666677 888999999999888876655432


Q ss_pred             HHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          314 AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       314 ~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      ..   +....+...  +.|++++.....++..+..   ....-.++.. ++..+-..+.+..+.||..|+..|..+.+.
T Consensus       337 ~~---~~~~~l~~~--~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AS---TILLALRER--DLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HH---HHHHHHHhh--cCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            22   122222222  2244444322221111111   1122222233 666667777888899999999999999884

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.21  E-value=2.5  Score=32.46  Aligned_cols=75  Identities=15%  Similarity=0.038  Sum_probs=58.9

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHhcC
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE--DYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~   95 (449)
                      -+++..|.+.|+++++.++..|+..|-.+....+......+.....+..|+.++...  ..+.++..++..+...+.
T Consensus        36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            456777888888999999999999998887765444555666668888899998763  337899999998888775

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.01  E-value=28  Score=35.23  Aligned_cols=299  Identities=11%  Similarity=0.085  Sum_probs=138.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH-hhCC--CChHHHHHHHHHHHHHhcCCCchh
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK-LLAS--PSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~--~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      ++..-+-|...|...=+..|+..++.++...+.....++... +..++. +..+  .++.-...++..+..++......+
T Consensus       363 leYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~  441 (960)
T KOG1992|consen  363 LEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK  441 (960)
T ss_pred             HHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence            333333344444223345667777777775544333333322 233332 3333  345566667777777764432222


Q ss_pred             hhHhhcCCHHHHHHH--------Hcc---cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHH
Q 039940          144 NLVLHEEALIPLLAQ--------LNE---HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNV  212 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~--------l~~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~  212 (449)
                      .-+...+-+-.+...        |..   ...+-++..+.   ..+............-..+|.++..+..+..-+-.++
T Consensus       442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI---Ky~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYA  518 (960)
T KOG1992|consen  442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI---KYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYA  518 (960)
T ss_pred             cceeeccccccHHHHHHHHhhHHhccCccccccchhhccc---ceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHH
Confidence            222111111111111        211   11111222221   2222221223334445788999999999888888899


Q ss_pred             HHHHHHcccCChh-HHHHHHHh-CcH-------HHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHH
Q 039940          213 CWTLSNLSDGTND-KIQAVIEA-GVC-------GPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLA  283 (449)
Q Consensus       213 ~~~l~~l~~~~~~-~~~~~~~~-~~~-------~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  283 (449)
                      ..++-.+..-.+. ... +... .+.       ..++..++.+...--+..++++..+..-.++...... ...+..|.+
T Consensus       519 A~aiEkil~vre~~~~~-if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~-~~~l~~Lte  596 (960)
T KOG1992|consen  519 AIAIEKLLTVRENSNAK-IFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHA-PELLRQLTE  596 (960)
T ss_pred             HHHHHhccccccCcccc-ccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhh-hHHHHHHHH
Confidence            8888776533322 111 1111 222       2222333334333334455555555444333321111 112333333


Q ss_pred             ----HhccCCchhHH---HHHHHHHHHHh-cCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC---H
Q 039940          284 ----LLINNHKKSIK---KESCWTVSNIT-AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT---Q  352 (449)
Q Consensus       284 ----ll~~~~~~~v~---~~a~~~l~nl~-~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~  352 (449)
                          ..+++.+|..-   -++..++-+.+ ..++.... .++...+|.+-..+..+=.+.--.+...++-++.+..   +
T Consensus       597 iv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs-~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip  675 (960)
T KOG1992|consen  597 IVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVS-SLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIP  675 (960)
T ss_pred             HHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence                33444344322   22333333333 34444443 3344677888788877656666666666666666532   2


Q ss_pred             HHH---------HHHHH-cCChHHHHhhcc
Q 039940          353 EQI---------KYLVR-EGCIKPLCDLLL  372 (449)
Q Consensus       353 ~~~---------~~l~~-~~~~~~L~~ll~  372 (449)
                      +..         ..+++ .|-++.++++++
T Consensus       676 ~~~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  676 DSYSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             hhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence            222         22333 577888877764

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=88.97  E-value=22  Score=33.92  Aligned_cols=145  Identities=14%  Similarity=0.173  Sum_probs=78.5

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHH
Q 039940          290 KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLC  368 (449)
Q Consensus       290 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~  368 (449)
                      +..|+..++.++..+-. -|+..     .-+|..|++-++.+ +..+|..++.+|..+...+.  .++.=-...+++.|+
T Consensus       289 ~~~V~Aa~A~A~v~l~~-lP~KL-----nPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc  360 (441)
T PF12054_consen  289 DVRVLAAAASALVALGG-LPKKL-----NPIIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLC  360 (441)
T ss_pred             HHHHHHHHHHHHHHhcc-CCCCc-----cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHh
Confidence            34455555555555532 22211     23677888888776 88999999999999887532  111111123566677


Q ss_pred             hhccC---CCHHHH--HHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940          369 DLLLC---ADPEIV--TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE  442 (449)
Q Consensus       369 ~ll~~---~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~  442 (449)
                      .++-.   ..|+.-  ...-..+-.+.+..+..........+...-...+.+.|+...|..|..+-.+++.++.=++.+
T Consensus       361 ~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw~  439 (441)
T PF12054_consen  361 TFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKLWE  439 (441)
T ss_pred             hhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHHh
Confidence            76622   222221  111111222222111111000000123334567899999999999988888888877655544

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=88.86  E-value=22  Score=33.81  Aligned_cols=299  Identities=12%  Similarity=0.100  Sum_probs=131.7

Q ss_pred             HHHHHHhhcC---CCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCch
Q 039940           67 VPRFVEFLLR---EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGC  142 (449)
Q Consensus        67 i~~L~~ll~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~  142 (449)
                      +..|+.++..   ..++.+....++++..+-..-......+++. .+..+....++ .++..-.....+++.+.+.....
T Consensus        28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~  106 (435)
T PF03378_consen   28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA  106 (435)
T ss_dssp             HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence            4555566654   2235566667777666555433443433322 33444444444 45666666666666665432211


Q ss_pred             hhh---HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940          143 RNL---VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN  218 (449)
Q Consensus       143 ~~~---~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  218 (449)
                      ...   -.+...++.+...| +..-.+..-++...++.+....+ ..........++.++.-.-=....-.-...+.|..
T Consensus       107 ~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a  185 (435)
T PF03378_consen  107 DPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQA  185 (435)
T ss_dssp             GHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHH
Confidence            111   22555677777777 44445677777777777776554 22222333444443321110011111222222322


Q ss_pred             cccCChhHHHHHHHhC----cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh-hHHHHHhcCCHHHHHHHhccCCchhH
Q 039940          219 LSDGTNDKIQAVIEAG----VCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF-QTQCVINHGAVPYLLALLINNHKKSI  293 (449)
Q Consensus       219 l~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v  293 (449)
                      .....+..   +...+    ++..+-+++.+...  -..+...|..+...-+. ..+..+ ..++..++.-|+++...+.
T Consensus       186 ~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf  259 (435)
T PF03378_consen  186 YIKKDPSF---IVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKF  259 (435)
T ss_dssp             HHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHH
T ss_pred             HHHhCchh---hcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHH
Confidence            22222211   11112    22233344444332  23456666655544332 111111 1244455555554435566


Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHH---CCChHHHHHHh-----hc-CchhHHHHHHHHHHHhhccCCHHHHH--HHHHc
Q 039940          294 KKESCWTVSNITA-GNRKQIQAVID---AGLIVPLVNLL-----QD-AEFDIKKEAAWAISNATKAGTQEQIK--YLVRE  361 (449)
Q Consensus       294 ~~~a~~~l~nl~~-~~~~~~~~l~~---~~~~~~L~~ll-----~~-~~~~v~~~a~~aL~~l~~~~~~~~~~--~l~~~  361 (449)
                      .+.-+..++.++. .+++..-..++   .|++..++.-+     .. ..+.-|+.++-++.++...+..-..+  .++. 
T Consensus       260 ~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~-  338 (435)
T PF03378_consen  260 VKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWP-  338 (435)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHH-
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHH-
Confidence            6665555665553 34444444443   45555555421     11 23455777777888877543211111  1111 


Q ss_pred             CChHHHHhhccCC
Q 039940          362 GCIKPLCDLLLCA  374 (449)
Q Consensus       362 ~~~~~L~~ll~~~  374 (449)
                      ..++.|+.+++.+
T Consensus       339 ~ll~~Ll~ll~~p  351 (435)
T PF03378_consen  339 PLLEALLKLLERP  351 (435)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCC
Confidence            1455666666543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.76  E-value=15  Score=39.21  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=65.3

Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC----------------CCHHHHHHHHHH
Q 039940          322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC----------------ADPEIVTVCLKG  385 (449)
Q Consensus       322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~----------------~~~~~~~~~~~~  385 (449)
                      ..|.++..++.++||.-|+.++..+............++.-....++.+|++                ...+.....+.+
T Consensus      1000 ~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisg 1079 (1610)
T KOG1848|consen 1000 VHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISG 1079 (1610)
T ss_pred             HHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHH
Confidence            3444555666789999999999988876433333333333334444445541                111233445566


Q ss_pred             HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940          386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      +..++...-+.-.      ..|.|....+.  .++-+..+..+.++++.-.|++-+++.
T Consensus      1080 Iaklf~e~fk~ll------nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1080 IAKLFSENFKLLL------NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred             HHHHHHHHHHHHH------hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence            6666643322211      13334443322  356677778888999998888887763

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=88.73  E-value=6.1  Score=45.18  Aligned_cols=265  Identities=15%  Similarity=0.205  Sum_probs=139.6

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHH----HHH--HcCCHHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH
Q 039940           33 SDDNSMQLEAATQFRRLLSIERSLPID----EVI--QAGIVPRFVEF-LLREDYPRLQFEAAWVLTNIASGTSVNTKVLI  105 (449)
Q Consensus        33 s~~~~~~~~a~~~L~~l~~~~~~~~~~----~~~--~~~~i~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  105 (449)
                      .++.+++..+...++.+....  ....    ...  -..++..+..+ +.+++ +.++......+.      ........
T Consensus       492 ~~~~e~r~~~~l~~~~ll~~~--~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la  562 (2341)
T KOG0891|consen  492 ADDSEIRKNAALTCCELLKYD--IICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA  562 (2341)
T ss_pred             cccHHHHHHHHHHHHHHHhhh--hhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence            466777777766666554432  1100    000  11112222222 22334 455444433332      22333345


Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC
Q 039940          106 DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP  185 (449)
Q Consensus       106 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  185 (449)
                      +.+.+..+...+..+.-.+++.+...+++++..+|.+.-..+....+. ..+-+..+....+......-+..+....+..
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~-~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE-LLTELEFSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH-HhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence            556677777788888899999999999999887763321111111111 1111111111111111111111111111111


Q ss_pred             ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcC
Q 039940          186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       186 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~  264 (449)
                      ........+..++..+...+..+...++.++..|+...........+ ..++.+.+.+.+ .+..-+..+.++++++...
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            12223455566777777778888888999999998765533433344 455555555554 4556778899999999865


Q ss_pred             ChhhHHHHH-hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940          265 DDFQTQCVI-NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN  308 (449)
Q Consensus       265 ~~~~~~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  308 (449)
                      ......... ...++..+...+.......++.++...++++....
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d  765 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD  765 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence            332222111 23456666777766656778888888888775433

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=88.25  E-value=8  Score=34.31  Aligned_cols=139  Identities=14%  Similarity=0.205  Sum_probs=79.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh-HHHHhCCChHHHHHhh----C--------CCChHHHHHHHHH
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT-KVLIDHGAVPIFVKLL----A--------SPSDDVREQAVWA  131 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l----~--------~~~~~~~~~a~~~  131 (449)
                      =++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-+.+    .        .++..+...+.-+
T Consensus       119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            35899999999998 8999999999999998443332 3366667665555443    3        2445677777777


Q ss_pred             HHHHhcC---CC-chhhhHhhcCCHHHHHHHHcccc---cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC
Q 039940          132 LGNIVAH---SP-GCRNLVLHEEALIPLLAQLNEHA---RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD  204 (449)
Q Consensus       132 L~~l~~~---~~-~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~  204 (449)
                      +..++..   .+ ..+......-.-..++.-+....   .+.++...+..+..+...-..........+++.+...+.++
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            7777532   11 11111111111111333332222   36666666666666655543333444456666666655543

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.88  E-value=11  Score=29.25  Aligned_cols=69  Identities=22%  Similarity=0.354  Sum_probs=54.5

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHH---HHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNG---IREKAV  438 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~---i~~~a~  438 (449)
                      ++..|..-+.+.++.++..|+.+|..+++.+..            .|...+-...+++.|..+ .......   |++++.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l  110 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL  110 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence            566777788889999999999999999998754            366777677788888887 4444444   899999


Q ss_pred             HHHHH
Q 039940          439 TILET  443 (449)
Q Consensus       439 ~~i~~  443 (449)
                      .++..
T Consensus       111 ~ll~~  115 (140)
T PF00790_consen  111 ELLQE  115 (140)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88875

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=87.83  E-value=31  Score=34.36  Aligned_cols=161  Identities=19%  Similarity=0.212  Sum_probs=93.4

Q ss_pred             ChHHHHHhhCC----CChHHHHHHHHHHHHHhc----CCCchhhhHhhcCCHHHHHHHHcc---cccHHHHHHHHHHHHH
Q 039940          109 AVPIFVKLLAS----PSDDVREQAVWALGNIVA----HSPGCRNLVLHEEALIPLLAQLNE---HARLSMLRIGTWTLSN  177 (449)
Q Consensus       109 ~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~l~~  177 (449)
                      .+..+..++.+    .+..++..|+-+++++..    ..+.+...+ ....++.+...+..   ..+.+-+..++.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            45666677664    346677877777777753    222111111 12345555555532   2345555667777777


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhc-C--CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchh
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIH-L--DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLI  252 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~-~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~  252 (449)
                      +-..          ..++.+...+. .  ....+|..|++++..++...+...+        +.++.+..+  .++++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence            6554          45556666665 2  2467899999999988765554332        455555554  4567888


Q ss_pred             hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHH
Q 039940          253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESC  298 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  298 (449)
                      .|+..+...   ++..       ..+..+...+....+.+|+....
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~  570 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVY  570 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhH
Confidence            877766332   1221       24556666776664666655443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.53  E-value=54  Score=36.79  Aligned_cols=113  Identities=15%  Similarity=0.071  Sum_probs=75.8

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCChh
Q 039940          110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFD  188 (449)
Q Consensus       110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~  188 (449)
                      +..++..+..+++..+-.+..+++.++...+.. ..+  ....+.++..+....|+-.|..-..++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            456666677788999988999999988654322 111  2345567777756666666666666677766665 223334


Q ss_pred             hhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChh
Q 039940          189 QVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTND  225 (449)
Q Consensus       189 ~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~  225 (449)
                      .....+..+..+..++ ++.++..++.++..+......
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p  992 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGP  992 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence            4456677777777655 569999999999988765443

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=87.31  E-value=8.1  Score=30.03  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=59.2

Q ss_pred             ChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHhhh
Q 039940          320 LIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP-LCDLLLC---ADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       320 ~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~-L~~ll~~---~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      .+..|..-+.. .++.++..|+..|-.++.+++..+...+...+++.. |..++..   .+..|+.+++..+........
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~  118 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR  118 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence            34455555654 588899999999999999998888888888889987 8999863   245789999999988876553

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=86.97  E-value=14  Score=30.07  Aligned_cols=72  Identities=14%  Similarity=0.190  Sum_probs=54.5

Q ss_pred             CCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          276 GAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       276 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      ..++.+++-|... +...+--|...+..+... ..+.+-.++. .++..+.+.|+..++++...++.+|..++..
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~  110 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTS  110 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            4677788888777 555677777777777654 5554444443 5888889999999999999999999999664

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=86.89  E-value=16  Score=30.05  Aligned_cols=145  Identities=12%  Similarity=0.064  Sum_probs=89.1

Q ss_pred             CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940          151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAV  230 (449)
Q Consensus       151 ~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  230 (449)
                      .++.+++.. .+++..++..|+.++..+.+.+-..+    ..++|.++.+..++++.++..|...+..+.+..+.....-
T Consensus         9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen    9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            355666666 67889999999999999888762111    3679999999999999999999999999987766554433


Q ss_pred             HHhCcHHHHHHhh---CCCCC-cc---hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-------chhHHHH
Q 039940          231 IEAGVCGPLVELL---GHPSP-SV---LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-------KKSIKKE  296 (449)
Q Consensus       231 ~~~~~~~~L~~ll---~~~~~-~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~  296 (449)
                      ...|+ ..-..+-   ..+.. ..   ....+..+..+...+...+..+     +..+++.+....       .+.-...
T Consensus        84 ~~~gi-~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   84 YSEGI-RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHHHH-HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence            33332 3222221   11111 11   3444555555666545444433     445555554321       2333455


Q ss_pred             HHHHHHHHhc
Q 039940          297 SCWTVSNITA  306 (449)
Q Consensus       297 a~~~l~nl~~  306 (449)
                      ..++.-|++.
T Consensus       158 ~~Fla~nLA~  167 (187)
T PF12830_consen  158 LLFLAENLAT  167 (187)
T ss_pred             HHHHHHHHhc
Confidence            6666666664

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=86.47  E-value=28  Score=32.40  Aligned_cols=306  Identities=13%  Similarity=0.096  Sum_probs=150.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCC-CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHhcCCChhh
Q 039940           32 WSDDNSMQLEAATQFRRLLSIERS-LPIDEVIQAGIVPRFVEFLL----R------EDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        32 ~s~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~i~~L~~ll~----~------~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .+.+.+-+..|...|.+....... +....+.  .-++.+++.++    +      +.+.++..+|+++++.+.. +++.
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i   79 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI   79 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence            344555666666666655544321 1122221  11344444332    1      2136888999999999987 4554


Q ss_pred             hHHHHhCC---ChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---c-cccHHHHHHH
Q 039940          101 TKVLIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---E-HARLSMLRIG  171 (449)
Q Consensus       101 ~~~~~~~~---~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~a  171 (449)
                      ...+-+.-   ++...+..+.+  .+..+....+|+|..=-     +...++....+..++..+.   + -.+..+....
T Consensus        80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er  154 (372)
T PF12231_consen   80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISER  154 (372)
T ss_pred             HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence            44443321   34555556644  44677777777777432     2122333444444554442   2 3456778888


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC--C-hhHHHH---HHHh----C-----cH
Q 039940          172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG--T-NDKIQA---VIEA----G-----VC  236 (449)
Q Consensus       172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~--~-~~~~~~---~~~~----~-----~~  236 (449)
                      +.++.++....|.........=+|.++..+-+....++..+...+..+...  . ......   ..+.    +     +.
T Consensus       155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (372)
T PF12231_consen  155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC  234 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence            888888888765444333344566666666666777777665555444321  1 111111   1111    1     23


Q ss_pred             HHHHHhhCCCCCcchhhHHHH-HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHH
Q 039940          237 GPLVELLGHPSPSVLIPALRT-VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA---GNRKQI  312 (449)
Q Consensus       237 ~~L~~ll~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~  312 (449)
                      +.+..++.+.+......-+|. +..+.. +.....--.-...+...-..++++ ++.+|..|..+=..+..   .++...
T Consensus       235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~-~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~  312 (372)
T PF12231_consen  235 ERLKEMIKSKDEYKLAMQIWSVVILLLG-SSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTS  312 (372)
T ss_pred             HHHHHHHhCcCCcchHHHHHHHHHHHhC-CchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            335555555333322222332 222222 121100011123455555566777 88999888665554442   121111


Q ss_pred             HHHHHCCChHHHHHHhhcC-ch----hHHHHHHHHHHHhhc
Q 039940          313 QAVIDAGLIVPLVNLLQDA-EF----DIKKEAAWAISNATK  348 (449)
Q Consensus       313 ~~l~~~~~~~~L~~ll~~~-~~----~v~~~a~~aL~~l~~  348 (449)
                      ...++. +..++...+... ..    +++..+...++++..
T Consensus       313 ~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  313 PKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            111111 223344444433 23    566666666666654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.44  E-value=39  Score=34.11  Aligned_cols=274  Identities=11%  Similarity=0.079  Sum_probs=139.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHh--CCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCch-
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLID--HGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGC-  142 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~-  142 (449)
                      -..++.++++.++.-++..+++.+.-...+-.-..+.+..  ......+.+++.. +.-+.+...+..++.+.....+. 
T Consensus       528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I  607 (978)
T KOG1993|consen  528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI  607 (978)
T ss_pred             HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            4456777888764667788888888777643222222221  2334444455543 44556666777777776433221 


Q ss_pred             hhhHhhcCCHHHHHHHHc-cc-ccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC---HHHHHHHHHHHH
Q 039940          143 RNLVLHEEALIPLLAQLN-EH-ARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDD---EEVLRNVCWTLS  217 (449)
Q Consensus       143 ~~~~~~~~~i~~l~~~l~-~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~~~~~~~~~l~  217 (449)
                      +...   +.+-.++..+- .+ +.+-++...+.++.|+...-.........-.+|.+-...+.+.   .-+.+.++..-.
T Consensus       608 ~P~~---~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~  684 (978)
T KOG1993|consen  608 APYA---STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWL  684 (978)
T ss_pred             hHHH---HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHH
Confidence            1111   12222333332 23 3344566677888898877654555554555555555444322   223333332222


Q ss_pred             HcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH-HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940          218 NLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG-NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE  296 (449)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  296 (449)
                      ....+.+.....+.  +++|.+...+....+.++ .++.++. .+.-.+.... .-...|+.+.+..++.+- ..+-...
T Consensus       685 ~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl~a  759 (978)
T KOG1993|consen  685 TTLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGLQA  759 (978)
T ss_pred             HHHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence            22222221111111  456777777655443333 3333332 2222222211 122346777777777655 4445555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhcc
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKA  349 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~  349 (449)
                      .+.++.++...++ ........++++.+..-+-.+  .|-+...-+..++.+...
T Consensus       760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~  813 (978)
T KOG1993|consen  760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR  813 (978)
T ss_pred             HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence            5666666655554 444555667777777665332  455655566666666555

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=86.33  E-value=13  Score=33.71  Aligned_cols=78  Identities=8%  Similarity=0.001  Sum_probs=66.3

Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      .++..+.+-+...++.|...|+..+..++..+...++..+...++...|..++. +..+.++++.-..+....+...+.
T Consensus        45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D  123 (462)
T KOG2199|consen   45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD  123 (462)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence            367788888999999999999999999999988888888888899999999998 678888888888887777655443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.32  E-value=2.2  Score=35.88  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHc-------CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH-HhC
Q 039940           36 NSMQLEAATQFRRLLSIERSLPIDEVIQA-------GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL-IDH  107 (449)
Q Consensus        36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-------~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~  107 (449)
                      .+-|..|+.+|++++-.  +.+.+.+...       .++..|++++....++-.++-|+-.|.+++..++.....+ .+.
T Consensus       138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~  215 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK  215 (257)
T ss_pred             CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence            35688899999999765  3343333332       3456677777777668899999999999999776665444 456


Q ss_pred             CChHHHHHhhCCCC
Q 039940          108 GAVPIFVKLLASPS  121 (449)
Q Consensus       108 ~~i~~L~~~l~~~~  121 (449)
                      +.|..|+.++...+
T Consensus       216 ~~i~~Li~FiE~a~  229 (257)
T PF12031_consen  216 PCISHLIAFIEDAE  229 (257)
T ss_pred             chHHHHHHHHHHHH
Confidence            89999999997543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=86.13  E-value=13  Score=33.11  Aligned_cols=79  Identities=15%  Similarity=0.298  Sum_probs=64.1

Q ss_pred             CCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCH-HHHHHHHHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHH
Q 039940          318 AGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQ-EQIKYLVREGCIKPLCDLLLCA---DPEIVTVCLKGLENILK  391 (449)
Q Consensus       318 ~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~~~~L~~ll~~~---~~~~~~~~~~~l~~l~~  391 (449)
                      .|.+..+++.+..+  +...|-.-+.|+..+..+.+. ....++.+.|+++.+++.+-++   +..+.+.+.++|.-+++
T Consensus        94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK  173 (303)
T PF12463_consen   94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK  173 (303)
T ss_pred             ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence            56788888888665  678899999999999998877 5666778899999999876544   44689999999999998


Q ss_pred             hhhhh
Q 039940          392 VGEAK  396 (449)
Q Consensus       392 ~~~~~  396 (449)
                      .....
T Consensus       174 ~n~~~  178 (303)
T PF12463_consen  174 FNRDA  178 (303)
T ss_pred             CCHHH
Confidence            87654

Proteins in this family are typically between 399 and 797 amino acids in length.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=85.65  E-value=24  Score=30.85  Aligned_cols=178  Identities=19%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCC-------CchhhhHhhcCCHHHHHHHHccccc----HHHHHHHHHHHHHh
Q 039940          110 VPIFVKLLASPSDDVREQAVWALGNIVAHS-------PGCRNLVLHEEALIPLLAQLNEHAR----LSMLRIGTWTLSNL  178 (449)
Q Consensus       110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~~----~~~~~~a~~~l~~l  178 (449)
                      -+.+++-+.+  ....+.++..|..++...       .+.|-.+.-...+|.++..+ ++++    ......++..|..+
T Consensus        66 q~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La~~  142 (262)
T PF14225_consen   66 QPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALAQV  142 (262)
T ss_pred             HHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHHHH
Confidence            3444444443  334566777787776421       11233333334566666666 3333    24455667888888


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      |........   ..++....+--..+..+....++..+..-..  ++     .+...+..++.+|.++.+.++..++.+|
T Consensus       143 a~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL  212 (262)
T PF14225_consen  143 AEAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQIL  212 (262)
T ss_pred             HHhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            865322111   1111111111112335555566665554321  11     1224567888999888889999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      ..+....+-...  ...+++..+.+++.++    .-.+|..++-++..
T Consensus       213 ~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  213 KVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             HHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            988766443322  4456888999999876    45566666655543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=85.63  E-value=1.9  Score=38.00  Aligned_cols=135  Identities=12%  Similarity=0.007  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHHcccCChhHHHHHHHh-C--cHHHHHHhhCCC---CCcchhhHHHHHHHhhcCChhhH-HHHHhcC
Q 039940          204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEA-G--VCGPLVELLGHP---SPSVLIPALRTVGNIVTGDDFQT-QCVINHG  276 (449)
Q Consensus       204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~--~~~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~  276 (449)
                      ..+..+.-++++++|+..+...... +.+. +  +++.+.......   +..++..+...+.|++....... ..-....
T Consensus       122 ~~~~~~ml~lR~l~NlF~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~  200 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSHPPGRQL-LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE  200 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCCCHHH-HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCccHHH-HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            4677788899999999887665433 3332 2  222333322222   56788888888888864311111 0001112


Q ss_pred             CHHHHHH-HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-CchhHHHHH
Q 039940          277 AVPYLLA-LLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEA  339 (449)
Q Consensus       277 ~l~~L~~-ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~a  339 (449)
                      ++..+.+ +.....++++...++-++|++....+.........|+-..+...-.. .++.+++.+
T Consensus       201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence            4556666 33332388999999999999997665544333223344333333322 244554443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.53  E-value=33  Score=31.62  Aligned_cols=158  Identities=16%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             cHHHHHHhhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc--c-------CCchhHHHHHHHHHHHH
Q 039940          235 VCGPLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI--N-------NHKKSIKKESCWTVSNI  304 (449)
Q Consensus       235 ~~~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~-------~~~~~v~~~a~~~l~nl  304 (449)
                      +-..++..+..+.+ ..+...+..+..+++..+. .+.+.....++.|+.+.+  .       ..+..+..++..+|+|+
T Consensus        46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~-L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl  124 (532)
T KOG4464|consen   46 LGERIFEVLENGEPLTHRVVCLETVRILSRDKDG-LEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL  124 (532)
T ss_pred             HHHHHHHHHhcCCCchhhhhHHHHHHHHhccccc-cccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence            34455555555543 3344555556555554221 111221222333333321  1       11567899999999999


Q ss_pred             hcCCHHHHHHHHHCCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCC----
Q 039940          305 TAGNRKQIQAVIDAGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCA----  374 (449)
Q Consensus       305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~----  374 (449)
                      ..+++.......+......+.+.+...     ...+...-+..|.-+... ..+.+..++ +-++++.+.+.+.++    
T Consensus       125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltal-e~~~Rsql~~~l~Gl~~lt~~led~lgid  203 (532)
T KOG4464|consen  125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTAL-ETDHRSQLIAELLGLELLTNWLEDKLGID  203 (532)
T ss_pred             HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHh-hHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence            999988888888777766666655332     112333333333333332 345555544 568888888887542    


Q ss_pred             --------CHHHHHHHHHHHHHHHHhhh
Q 039940          375 --------DPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       375 --------~~~~~~~~~~~l~~l~~~~~  394 (449)
                              +++-...++++|..++...-
T Consensus       204 se~n~~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  204 SEINVPPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence                    22455677788877776543

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=84.32  E-value=30  Score=31.69  Aligned_cols=217  Identities=19%  Similarity=0.144  Sum_probs=108.0

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc
Q 039940           62 IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG  141 (449)
Q Consensus        62 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  141 (449)
                      +...++..+..++..+.++......+.++..-+..-    ..-+...++..+.+-+.+..+.+|..-+..++......+.
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            334456677777776554666666776666554311    0111224567777777777777888877778777651111


Q ss_pred             hhhhHhhcCCHHHHHHHHcc---cccHHHH---HHHHHHHHHhhcCCCCCChhhhhchHH--------H-H--HHhhcC-
Q 039940          142 CRNLVLHEEALIPLLAQLNE---HARLSML---RIGTWTLSNLCKGKPQPPFDQVRPVLP--------A-L--AQLIHL-  203 (449)
Q Consensus       142 ~~~~~~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~l~~l~~~~~~~~~~~~~~~l~--------~-l--~~ll~~-  203 (449)
                      ....-.-...++.+++.+.+   ++-+..+   ..++.++..++.... ...........        . +  -++... 
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~~~kps~ll~~kvyskl  173 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKL-DKIDSKNISFWSLALDPKPSFLLSEKVYSKL  173 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccc-hhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence            11111123456666666632   1111111   112222222111110 00000000000        0 0  011222 


Q ss_pred             CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHH
Q 039940          204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYL  281 (449)
Q Consensus       204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L  281 (449)
                      .+++-....++++..+..........-.....-..++.++-++  .+++|..|+..+..+...++..    +...++..+
T Consensus       174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l  249 (339)
T PF12074_consen  174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL  249 (339)
T ss_pred             CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence            3445555666666666544332221111224567788888777  7899999999999988776653    223345555


Q ss_pred             HHHhcc
Q 039940          282 LALLIN  287 (449)
Q Consensus       282 ~~ll~~  287 (449)
                      -..+..
T Consensus       250 ~~~l~~  255 (339)
T PF12074_consen  250 WKWLSS  255 (339)
T ss_pred             HHHHHh
Confidence            555543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.87  E-value=48  Score=32.88  Aligned_cols=293  Identities=14%  Similarity=0.141  Sum_probs=152.7

Q ss_pred             hhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           21 LEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        21 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      ...++.+.+.|. +.|+..|..|-.+|..+...  .+.         +..-.-++..++.+--+..|..+|.++..+.. 
T Consensus         4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t-   71 (1082)
T KOG1410|consen    4 LAQLESLCKDLYESTDPTARHRAEKALAELSES--PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-   71 (1082)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-
Confidence            345566666664 78899999999999888532  222         33333445555557778888888888877332 


Q ss_pred             hhHHHHhCCChHHHHHhhCCCCh----HHHHHHHHHHHHHhcCCCc--hhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSD----DVREQAVWALGNIVAHSPG--CRNLVLHEEALIPLLAQLNEHARLSMLRIGTW  173 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~----~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  173 (449)
                      .........+-..++.++....+    -+....+..++.+......  .++...-.+.+..+.+.+ +..+.+--..++.
T Consensus        72 ~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~  150 (1082)
T KOG1410|consen   72 PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQ  150 (1082)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHH
Confidence            11111111344677777766443    3444455556666532211  111111123455566666 4444444445555


Q ss_pred             HHHHhhcCCC----CCChhh------------hhchHHHHHHhhcCC------C---HHHHHHHH----HHHHH-----c
Q 039940          174 TLSNLCKGKP----QPPFDQ------------VRPVLPALAQLIHLD------D---EEVLRNVC----WTLSN-----L  219 (449)
Q Consensus       174 ~l~~l~~~~~----~~~~~~------------~~~~l~~l~~ll~~~------~---~~~~~~~~----~~l~~-----l  219 (449)
                      ++..+..+..    ......            .-.++..-..+++..      |   ..+...++    .|+..     .
T Consensus       151 iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss  230 (1082)
T KOG1410|consen  151 ILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSS  230 (1082)
T ss_pred             HHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccc
Confidence            6665554331    111100            012222222333211      1   12222222    22211     1


Q ss_pred             ccCC-h---------hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-----ChhhHHHHHhcCCHHHHHHH
Q 039940          220 SDGT-N---------DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-----DDFQTQCVINHGAVPYLLAL  284 (449)
Q Consensus       220 ~~~~-~---------~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-----~~~~~~~~~~~~~l~~L~~l  284 (449)
                      .... +         .-...+.+...++.+.++..+-.++.-..|+.|+..+++.     ++..+...+ ...++-...+
T Consensus       231 ~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl-~~Lv~Gvk~i  309 (1082)
T KOG1410|consen  231 TDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYL-QHLVEGVKRI  309 (1082)
T ss_pred             cccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHH
Confidence            1111 0         1123455667788999999988899999999999999753     222222222 1244445555


Q ss_pred             hccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940          285 LINNH---KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       285 l~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~  329 (449)
                      +..+.   |+.--.+-|+.|+.+-.  ..+..+++.....+..++++.
T Consensus       310 l~np~~LsD~~nyHeFCRllaRlkt--NYQL~ELv~v~~Y~e~irLiA  355 (1082)
T KOG1410|consen  310 LENPQGLSDPANYHEFCRLLARLKT--NYQLGELVKVECYPEVIRLIA  355 (1082)
T ss_pred             HhCCcCCCCcchHHHHHHHHHHHHh--hhhhHhhhccCCcHHHHHHHH
Confidence            55442   55566667777777732  345556666666666666654

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.80  E-value=82  Score=35.51  Aligned_cols=230  Identities=17%  Similarity=0.104  Sum_probs=122.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhh
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNL  145 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~  145 (449)
                      +..++..+..++ +..+..+..+++.++..-++.  .++ .+....+++-+.+ .++-.|..-.-+++.+-++.......
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            445556666777 788888888888887622211  111 1224455555544 45555554455555554332222222


Q ss_pred             HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CHHHHH------------
Q 039940          146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD---DEEVLR------------  210 (449)
Q Consensus       146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~------------  210 (449)
                      -.....+..++.+..++.++.|+..++.++..+...............+..+..++.+.   ..++..            
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            22233455666666566778999999999998887763333555566677777766542   222222            


Q ss_pred             -HHHHHHHHcccCChh--HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc
Q 039940          211 -NVCWTLSNLSDGTND--KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN  287 (449)
Q Consensus       211 -~~~~~l~~l~~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  287 (449)
                       ....+++.=...+..  ... .+....+-...-++.++++.+...+..++-++-...+....   -.-++..+..++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence             222233322222221  222 22222334444455667888899999999887654333211   11245556666655


Q ss_pred             CCchhHHHHHHHHHHHHh
Q 039940          288 NHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       288 ~~~~~v~~~a~~~l~nl~  305 (449)
                      . ..-.|..+..++..+.
T Consensus      1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             h-hhhhhhhHHhhhhHHh
Confidence            5 3334444444444443

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=82.09  E-value=52  Score=38.34  Aligned_cols=253  Identities=15%  Similarity=0.094  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC----Ch--hhhhchHHHHH
Q 039940          125 REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP----PF--DQVRPVLPALA  198 (449)
Q Consensus       125 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~----~~--~~~~~~l~~l~  198 (449)
                      ...|.++++++-......      ...+...+.......+++++..+..++..+.......    ..  ......+..+.
T Consensus       461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll  534 (2341)
T KOG0891|consen  461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL  534 (2341)
T ss_pred             HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence            445677777764322111      1122333333336678888888877766666554331    11  11233344444


Q ss_pred             Hhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940          199 QLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA  277 (449)
Q Consensus       199 ~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  277 (449)
                      .+-. .+++.++......+.      ........+.+.+..+...+.+..-.++..+...+++++..++...-..+....
T Consensus       535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~  608 (2341)
T KOG0891|consen  535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL  608 (2341)
T ss_pred             HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence            3333 346666666655554      112233455566667777777888889999999999999887754443333334


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHH
Q 039940          278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKY  357 (449)
Q Consensus       278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  357 (449)
                      +..+-++-.+. -..+....+.-+.-+....+..+...++ ..+..++..+.+.+..+...+..++..|+..+..+ .+.
T Consensus       609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~-~~~  685 (2341)
T KOG0891|consen  609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE-MVK  685 (2341)
T ss_pred             HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccch-hhh
Confidence            44444444444 3333333433333333344443333333 45566777777778888899999999998875422 222


Q ss_pred             HHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhh
Q 039940          358 LVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       358 l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~  393 (449)
                      ..+ ..+..+.+.+.. .+..-+..+++.+.++....
T Consensus       686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~  721 (2341)
T KOG0891|consen  686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST  721 (2341)
T ss_pred             ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence            222 344444444443 33344566777777666543

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=82.06  E-value=16  Score=33.05  Aligned_cols=186  Identities=11%  Similarity=0.121  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH-hhCC---CCCcchhh-HHHHHHHhh----cCChhhHHHHHhcCCH
Q 039940          208 VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE-LLGH---PSPSVLIP-ALRTVGNIV----TGDDFQTQCVINHGAV  278 (449)
Q Consensus       208 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~---~~~~v~~~-a~~~l~~l~----~~~~~~~~~~~~~~~l  278 (449)
                      +++..+..+.......++. +. +...+++.++. .+.+   ..+..|.. ++.+++.++    ....+....+.+ .++
T Consensus        43 iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf  119 (319)
T PF08767_consen   43 IKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF  119 (319)
T ss_dssp             HHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence            4556666665555444432 22 33356676666 3322   33333333 333333333    322333444443 366


Q ss_pred             HHHHHHhccCC--chhHHHHHHHHHHHHhcCCHHHHHHHHH---CCChHHHHHHhhcCchhHHHHHHHHHHHhhccC---
Q 039940          279 PYLLALLINNH--KKSIKKESCWTVSNITAGNRKQIQAVID---AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG---  350 (449)
Q Consensus       279 ~~L~~ll~~~~--~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---  350 (449)
                      ...+.++..+.  -|+.|..-...+..+...+....-.+-.   ..++..++..+++.+.++...++.++..+....   
T Consensus       120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~  199 (319)
T PF08767_consen  120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT  199 (319)
T ss_dssp             HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            77777776532  4788888777887776643222211100   124556677778889999999999998887753   


Q ss_pred             CHHHHHHHHHcCChHHH---HhhccCC-CHHHHHHHHHHHHHHHHhhhhh
Q 039940          351 TQEQIKYLVREGCIKPL---CDLLLCA-DPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       351 ~~~~~~~l~~~~~~~~L---~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      +++....+.+.-.+..+   ...+.+. +...-..-..+|..++...+..
T Consensus       200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~  249 (319)
T PF08767_consen  200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESG  249 (319)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcc
Confidence            34666666665444433   3334333 3444555557888888775543

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=81.63  E-value=57  Score=32.14  Aligned_cols=58  Identities=22%  Similarity=0.340  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940           33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~   95 (449)
                      +.++++....+..|..++.   --+...+...++++.+..-+.+.  ++.+..++.||..++.
T Consensus       204 ~~~~SLi~ATLesllrfl~---wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~  261 (1053)
T COG5101         204 SRDESLIEATLESLLRFLE---WIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD  261 (1053)
T ss_pred             cCChHHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence            5567777777777777753   46677788888888877766554  3567777788877765

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=81.59  E-value=16  Score=26.24  Aligned_cols=92  Identities=14%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHH-HHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH
Q 039940           37 SMQLEAATQFR-RLLSIERSLPIDEVI-QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV  114 (449)
Q Consensus        37 ~~~~~a~~~L~-~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  114 (449)
                      ++|..|+..+. ++..+  -.....+. ....+..|++....+. .-.+..++..+..+.. .+.....+.+-|+...|.
T Consensus         2 EIR~RAL~~I~~Kl~~~--Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~   77 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG--LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLS   77 (98)
T ss_pred             hHHHHHHHHHHHHHHhc--cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHH
Confidence            45666654433 33221  22223333 4567788888888888 4578889999999888 677888888889999877


Q ss_pred             HhhCCCChHHHHHHHHHH
Q 039940          115 KLLASPSDDVREQAVWAL  132 (449)
Q Consensus       115 ~~l~~~~~~~~~~a~~~L  132 (449)
                      ++-...++..+...-.++
T Consensus        78 klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   78 KLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHhcCCHHHHHHHHHHH
Confidence            777666676666555444

>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised

Probab=81.58  E-value=15  Score=28.70  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=85.1

Q ss_pred             CChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhc--CCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHH
Q 039940           96 GTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT  172 (449)
Q Consensus        96 ~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  172 (449)
                      ++++.-+.+.+.+.+..+.+++.. ....++.+.+..+.-+..  .++..--.+.+.+.+..++..--+-.++++...-.
T Consensus        14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI   93 (149)
T PF09758_consen   14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI   93 (149)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence            346677888888999999999987 567788888887777653  33444456678888888887665667889999988


Q ss_pred             HHHHHhhcCCCCCChhh----hhchHH---HHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940          173 WTLSNLCKGKPQPPFDQ----VRPVLP---ALAQLIHLDDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       173 ~~l~~l~~~~~~~~~~~----~~~~l~---~l~~ll~~~~~~~~~~~~~~l~~l~  220 (449)
                      ..|..++..-.......    ..+-.|   .-+++..++|.-+|.++-..+.++.
T Consensus        94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~  148 (149)
T PF09758_consen   94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY  148 (149)
T ss_pred             HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence            88888886542221111    122333   4455666788888877766655543

They contain a highly conserved FPL motif.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=81.51  E-value=19  Score=26.68  Aligned_cols=70  Identities=6%  Similarity=-0.011  Sum_probs=53.8

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh----c--cCCCHHHHHHHHHHHHHH
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL----L--LCADPEIVTVCLKGLENI  389 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l----l--~~~~~~~~~~~~~~l~~l  389 (449)
                      ++..|..-+.+.++.++..|+..|-.++.+|++.+...+....++..++..    .  ...+..++.++..++...
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w  113 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW  113 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence            556677777888999999999999999999998888888777666666543    1  123667888888877654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=81.28  E-value=11  Score=28.06  Aligned_cols=70  Identities=16%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH------hcCCCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL------KSHGNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~i~~~  436 (449)
                      ++..|..-+.+.++.+...++.+|..+++.+...            |...+.....+..+..+      -...+..|+++
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k  105 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK  105 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence            4666777778889999999999999999988653            56666666555555332      12347889999


Q ss_pred             HHHHHHHh
Q 039940          437 AVTILETY  444 (449)
Q Consensus       437 a~~~i~~~  444 (449)
                      +..+++..
T Consensus       106 ~~~l~~~w  113 (115)
T cd00197         106 AIELVQLW  113 (115)
T ss_pred             HHHHHHHH
Confidence            99998864

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=80.90  E-value=36  Score=29.40  Aligned_cols=129  Identities=15%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHH
Q 039940          232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~  310 (449)
                      +...++.++++++.++..    .-..++-.....-...-..+-.|-++.|..++.++. +.-+|..|+.++..++...+.
T Consensus        71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~  146 (249)
T PF06685_consen   71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI  146 (249)
T ss_pred             hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence            346778899998766541    111112211111111111122456677777887663 566899999999999986666


Q ss_pred             HHHHHHHCCChHHHHHH-hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH
Q 039940          311 QIQAVIDAGLIVPLVNL-LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP  366 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~  366 (449)
                      .+..+++  .+..++.. +...+..+.-.-...++.+--..-...++...+.|.++.
T Consensus       147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            5666555  34444443 333333322222333333322111223455566677655

The function of this family is unknown.

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=80.79  E-value=18  Score=34.78  Aligned_cols=117  Identities=17%  Similarity=0.182  Sum_probs=72.3

Q ss_pred             cCCHHHHHHHhccCCchhHHHHHHHHHHHHh--cCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccC-
Q 039940          275 HGAVPYLLALLINNHKKSIKKESCWTVSNIT--AGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAG-  350 (449)
Q Consensus       275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~--~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~-  350 (449)
                      .++++.+++.+..+   .+..--...++ .=  ......+..+.+.++++.|++.|... +.+++.+|+..|+.++... 
T Consensus        20 ~~~v~~llkHI~~~---~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~   95 (475)
T PF04499_consen   20 PNFVDNLLKHIDTP---AIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR   95 (475)
T ss_pred             ccHHHHHHHhcCCc---HHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            45666666666544   22222222222 00  12223444555789999999999744 7889999998888876642 


Q ss_pred             -----------CHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940          351 -----------TQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       351 -----------~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                                 .....+.+.....+..|++.+-. ........++.++..+++....
T Consensus        96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknns  152 (475)
T PF04499_consen   96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNS  152 (475)
T ss_pred             ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccc
Confidence                       13345666667778877775542 3355667788888888866533

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=80.72  E-value=47  Score=30.68  Aligned_cols=50  Identities=22%  Similarity=0.127  Sum_probs=38.7

Q ss_pred             ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV  146 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  146 (449)
                      ++......++..++-.|+.+..++|++-|+..-.+|.++.+.-...+..+
T Consensus       166 d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fi  215 (457)
T KOG2085|consen  166 DPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFI  215 (457)
T ss_pred             CHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            35566777888999999999999999999998888988865444444433

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=80.55  E-value=39  Score=34.25  Aligned_cols=81  Identities=15%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHH
Q 039940          247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVN  326 (449)
Q Consensus       247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~  326 (449)
                      .+..|..++..|+.+....+...-.+.+..+++.|+++|....+..+...|+.+|..+.-.-+......+. .++..+.+
T Consensus        81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~-~Lf~If~R  159 (668)
T PF04388_consen   81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP-DLFNIFGR  159 (668)
T ss_pred             CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH-HHHHHHHH
Confidence            45678999999999999888888889999999999999987767888888999999988755543333322 35555555


Q ss_pred             Hh
Q 039940          327 LL  328 (449)
Q Consensus       327 ll  328 (449)
                      ++
T Consensus       160 l~  161 (668)
T PF04388_consen  160 LL  161 (668)
T ss_pred             HH
Confidence            55

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	449
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-121
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-121
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-118
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-118
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-117
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-117
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-117
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-117
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-117
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-100
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-99
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-99
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-99
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		2e-99
1ial_A	453	Importin Alpha, Mouse Length = 453		2e-99
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		2e-99
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		2e-99
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		2e-99
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		2e-99
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-99
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		2e-99
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		2e-99
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		2e-99
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		2e-99
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		6e-99
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-32
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		5e-28
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		2e-09
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		2e-27
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		9e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-22
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		6e-05
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		6e-05
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		6e-05
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		6e-05
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		6e-05
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		6e-05
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		6e-05
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		7e-05
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		7e-05
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		7e-05
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		7e-05
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		7e-05
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		2e-04

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/446 (72%), Positives = 376/446 (84%), Gaps = 4/446 (0%)
Query: 1   LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
           LQ+Q  +P++ A  ++   KLE LPAM+ GV+SDDN++QLEA TQFR+LLSIERS PI+E
Sbjct: 55  LQAQAPVPASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEE 112
Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQ+G+VPRFV+FL RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL S 
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           SDDVREQAVWALGN+   SP CR+LVL   AL+PLLAQLNEH +LSMLR  TWTLSN C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232
Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           GKPQP F+Q RP LPALA+LIH +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LV
Sbjct: 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292
Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           ELL HPSPSVLIPALRTVGNIVTGDD QTQC+I+H A+P LL+LL  N KKSIKKE+CWT
Sbjct: 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352
Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +SNITAGN+ QIQAVI+AG+I PLVNLLQ AEFDIKKEAAWAISNAT  G+ +QIKYLV 
Sbjct: 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412
Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
           EGCIKPLCDLL+C D  IVTVCL+GLENILKVGE  K   +  GDVN ++++++ AEG +
Sbjct: 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 470
Query: 421 KIEDLKSHGNNGIREKAVTILETYWL 446
           KIE+L+SH NN I EKAV ILE YW+
Sbjct: 471 KIENLQSHDNNEIYEKAVKILEAYWM 496

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/423 (74%), Positives = 362/423 (85%), Gaps = 2/423 (0%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
           LPAM+ GV+SDDN++QLEA TQFR+LLSIERS PI+EVIQ+G+VPRFV+FL RED+P+LQ
Sbjct: 38  LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 84  FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
           FEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL S SDDVREQAVWALGN+   SP CR
Sbjct: 98  FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL 203
           +LVL   AL+PLLAQLNEH +LSMLR  TWTLSN C+GKPQP F+Q RP LPALA+LIH 
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
           +DEEVL + CW LS LSDGTNDKIQAVIEAGVC  LVELL HPSPSVLIPALRTVGNIVT
Sbjct: 218 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 277
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323
           GDD QTQC+I+H A+P LL+LL  N KKSIKKE+CWT+SNITAGN+ QIQAVI+AG+I P
Sbjct: 278 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 337
Query: 324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCL 383
           LVNLLQ AEFDIKKEAAWAISNAT  G+ +QIKYLV EGCIKPLCDLL+C D  IVTVCL
Sbjct: 338 LVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 397
Query: 384 KGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443
           +GLENILKVGE  K   +  GDVN ++++++ AEG +KIE+L+SH NN I EKAV ILE 
Sbjct: 398 EGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 444 YWL 446
           YW+
Sbjct: 456 YWM 458

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/425 (55%), Positives = 293/425 (68%), Gaps = 5/425 (1%)
Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
           I   M+  ++S     QL A  +FR+LLS E + PIDEVI   G+V RFVEFL R++   
Sbjct: 18  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           LQFE+AWVLTNIASG S+ T+++I  GAVPIF++LL+S  +DV+EQAVWALGNI   S  
Sbjct: 78  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQL 200
           CR+ VL    L PLL   ++  RL+M R   W LSNLC+GK  PP F +V P L  L+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           + + D +VL + CW LS LSDG NDKIQAVI+AGVC  LVELL H    V+ PALR VGN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTGDD QTQ ++N  +    L  L+++ K+SIKKE+CWT+SNITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
              L+++LQ AEF  +KEAAWAI+NAT  G+ EQIKYLV  GCIKPLCDLL   D +IV 
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L GLENIL++GE +  R  T   +N Y  L+E A G  KIE L+SH N  I +KA  +
Sbjct: 377 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 434
Query: 441 LETYW 445
           +E Y+
Sbjct: 435 IEHYF 439

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/425 (55%), Positives = 294/425 (69%), Gaps = 5/425 (1%)
Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
           I   M+  ++S     QL A  +FR+LLS E + PIDEVI   G+V RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           LQFE+AWVLTNIASG S+ T+++I  GAVPIF++LL+S  +DV+EQAVWALGNI   S  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQL 200
           CR+ VL    L PLL   ++  RL+M R   W LSNLC+GK  PP F +V P L  L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           + + D +VL + CW LS LSDG NDKIQAVI+AGVC  LVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTGDD QTQ ++N  A+   L  L+++ K+SIKKE+CWT+SNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
              L+++LQ AEF  +KEAAWAI+NAT  G+ EQIKYLV  GCIKPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L GLENIL++GE +  R  T   +N Y  L+E A G  KIE L+SH N  I +KA  +
Sbjct: 380 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
Query: 441 LETYW 445
           +E Y+
Sbjct: 438 IEHYF 442

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 294/427 (68%), Gaps = 11/427 (2%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
           LP M   + SDD   QL A  +FR++LS E   PID VIQAG+VPR VEF+ RE+ P  L
Sbjct: 89  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 147
Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
           Q EAAW LTNIASGTS  TKV++D  AVP+F++LL + S +V+EQA+WALGN+   S   
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
           R+ VL   A+ P+L   N + + S++R  TWTLSNLC+G KPQP +  V   LP LA+LI
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           +  D E L + CW +S LSDG  + IQAVI+  +   LVELL H S  V  PALR VGNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG+D QTQ VIN G +P  L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
            PLV LL+ AE+  KKEA WAISNA+  G Q  + I+YLV +GCIKPLCDLL  AD  I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
            V L  LENILK+GEA K  RG  I   N+ A  +E A G +KI + + + N+ I EKA 
Sbjct: 446 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502
Query: 439 TILETYW 445
            I+ETY+
Sbjct: 503 KIIETYF 509

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 294/427 (68%), Gaps = 11/427 (2%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
           LP M   + SDD   QL A  +FR++LS E   PID VIQAG+VPR VEF+ RE+ P  L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
           Q EAAW LTNIASGTS  TKV++D  AVP+F++LL + S +V+EQA+WALGN+   S   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
           R+ VL   A+ P+L   N + + S++R  TWTLSNLC+G KPQP +  V   LP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           +  D E L + CW +S LSDG  + IQAVI+  +   LVELL H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG+D QTQ VIN G +P  L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
            PLV LL+ AE+  KKEA WAISNA+  G Q  + I+YLV +GCIKPLCDLL  AD  I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
            V L  LENILK+GEA K  RG  I   N+ A  +E A G +KI + + + N+ I EKA 
Sbjct: 358 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 439 TILETYW 445
            I+ETY+
Sbjct: 415 KIIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/427 (54%), Positives = 294/427 (68%), Gaps = 11/427 (2%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
           LP M   + SDD   QL A  +FR++LS E   PID VIQAG+VPR VEF+ RE+ P  L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
           Q EAAW LTNIASGTS  TKV++D  AVP+F++LL + S +V+EQA+WALGN+   S   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
           R+ VL   A+ P+L   N + + S++R  TWTLSNLC+G KPQP +  V   LP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           +  D E L + CW +S LSDG  + IQAVI+  +   LVELL H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG+D QTQ VIN G +P  L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
            PLV LL+ AE+  KKEA WAISNA+  G Q  + I+YLV +GCIKPLCDLL  AD  I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
            V L  LENI+K+GEA K  RG  I   N+ A  +E A G +KI + + + N+ I EKA 
Sbjct: 358 EVTLDALENIIKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 439 TILETYW 445
            I+ETY+
Sbjct: 415 KIIETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  417 bits (1073), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
           LP M   + SDD   QL A  +FR++LS E   PID VIQAG+VPR VEF+ RE+ P  L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 61
Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
           Q EAAW LTNIASGTS  TKV++D  AVP+F++LL + S +V+EQA+WALGN+   S   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
           R+ VL   A+ P+L   N + + S++R  TWTLSNLC+G KPQP +  V   LP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           +  D E L + CW +S LSDG  + IQAVI+  +   LVELL H S  V  PALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG+D QTQ VIN G +P  L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
            PLV LL+ AE   KKEA WAISNA+  G Q  + I+YLV +GCIKPLCDLL  AD  I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
            V L  LENILK+GEA K  RG  I   N+ A  +E A G +KI + + + N+ I EKA 
Sbjct: 360 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 439 TILETYW 445
            I+ETY+
Sbjct: 417 KIIETYF 423

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  417 bits (1073), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
           LP M   + SDD   QL A  +FR++LS E   PID VIQAG+VPR VEF+ RE+ P  L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
           Q EAAW LTNIASGTS  TKV++D  AVP+F++LL + S +V+EQA+WALGN+   S   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
           R+ VL   A+ P+L   N + + S++R  TWTLSNLC+G KPQP +  V   LP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           +  D E L + CW +S LSDG  + IQAVI+  +   LVELL H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG+D QTQ VIN G +P  L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
            PLV LL+ AE   KKEA WAISNA+  G Q  + I+YLV +GCIKPLCDLL  AD  I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
            V L  LENILK+GEA K  RG  I   N+ A  +E A G +KI + + + N+ I EKA 
Sbjct: 359 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 439 TILETYW 445
            I+ETY+
Sbjct: 416 KIIETYF 422

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
           LP M   + SDD   QL A  +FR++LS E   PID VIQAG+VPR VEF+ RE+ P  L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 61
Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
           Q EAAW LTNIASGTS  TKV++D  AVP+F++LL + S +V+EQA+WALGN+   S   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
           R+ VL   A+ P+L   N + + S++R  TWTLSNLC+G KPQP +  V   LP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           +  D E L + CW +S LSDG  + IQAVI+  +   LVELL H S  V  PALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG+D QTQ VIN G +P  L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
            PLV LL+ AE   KKEA WAISNA+  G Q  + I+YLV +GCIKPLCDLL  AD  I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
            V L  LENILK+GEA K  RG  I   N+ A  +E A G +KI + + + N+ I EKA 
Sbjct: 360 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 439 TILETYW 445
            I+ETY+
Sbjct: 417 KIIETYF 423

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
           LP M   + SDD   QL A  +FR++LS E   PID VIQAG+VPR VEF+ RE+ P  L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
           Q EAAW LTNIASGTS  TKV++D  AVP+F++LL + S +V+EQA+WALGN+   S   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
           R+ VL   A+ P+L   N + + S++R  TWTLSNLC+G KPQP +  V   LP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           +  D E L + CW +S LSDG  + IQAVI+  +   LVELL H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG+D QTQ VIN G +P  L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
            PLV LL+ AE   KKEA WAISNA+  G Q  + I+YLV +GCIKPLCDLL  AD  I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
            V L  LENILK+GEA K  RG  I   N+ A  +E A G +KI + + + N+ I EKA 
Sbjct: 359 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 439 TILETYW 445
            I+ETY+
Sbjct: 416 KIIETYF 422

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  360 bits (924), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S +   QL+A    R+LLS E+  PID +I+AG++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 147 LHEEALIPLLAQLNEHARLSM----LRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLI 201
           +   A+ PLLA L      S+    LR  TWTLSNLC+ K P PP D V  +LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           H DD EVL + CW +S L+DG N++I  V++ GV   LV+LLG     ++ PALR +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
           VTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTV 381
             LV++L  A+F  +KEA WA++N T  GT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 382 CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
            L  + NI +  E        +G+  + + ++E   G  KIE L++H N  + + +++++
Sbjct: 372 ILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 442 ETYW 445
           E Y+
Sbjct: 425 EKYF 428

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  360 bits (923), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 405
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 406 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 458
Query: 441 LETYW 445
           +E Y+
Sbjct: 459 IEKYF 463

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 441 LETYW 445
           +E Y+
Sbjct: 473 IEKYF 477

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 441 LETYW 445
           +E Y+
Sbjct: 473 IEKYF 477

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  359 bits (922), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 441 LETYW 445
           +E Y+
Sbjct: 473 IEKYF 477

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  359 bits (922), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 158 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 216
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 217 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 276
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 277 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 335
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 336 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 395
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 396 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 448
Query: 441 LETYW 445
           +E Y+
Sbjct: 449 IEKYF 453

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  359 bits (922), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 376 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 428
Query: 441 LETYW 445
           +E Y+
Sbjct: 429 IEKYF 433

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 441 LETYW 445
           +E Y+
Sbjct: 423 IEKYF 427

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 403
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 404 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 456
Query: 441 LETYW 445
           +E Y+
Sbjct: 457 IEKYF 461

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 441 LETYW 445
           +E Y+
Sbjct: 418 IEKYF 422

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 441 LETYW 445
           +E Y+
Sbjct: 423 IEKYF 427

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 441 LETYW 445
           +E Y+
Sbjct: 422 IEKYF 426

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 441 LETYW 445
           +E Y+
Sbjct: 418 IEKYF 422

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 441 LETYW 445
           +E Y+
Sbjct: 422 IEKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 441 LETYW 445
           +E Y+
Sbjct: 423 IEKYF 427

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  357 bits (917), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 270/425 (63%), Gaps = 15/425 (3%)
Query: 27  MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
           +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +QFE+
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 87  AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
           AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R+LV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           +   A+ PLLA L     LS L  G     TWTLSNLC+ K P PP D V  +LP L +L
Sbjct: 201 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 259
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +GN
Sbjct: 260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 320 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 378
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           +  LV +L  A+F  +K AAWAI+N T  GT EQI YLV  G I+PL +LL   D +I+ 
Sbjct: 379 VPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++ +
Sbjct: 439 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 491
Query: 441 LETYW 445
           +E Y+
Sbjct: 492 IEKYF 496

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 17/250 (6%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSN-LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
           LP + Q ++ DD +   +     S  LSDG N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
            AL  + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
           QAVIDAG +  LV LL      I +EA WA+SN    G  EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLS 190
Query: 373 CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNG 432
             + +I+   L  L NI   G             N+  + V+ A   +K+E L+SH N  
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 433 IREKAVTILE 442
           I+++A   LE
Sbjct: 238 IQKEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 115/197 (58%), Gaps = 4/197 (2%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP 253
           LP + Q ++  D++ L++    LS ++ G N++IQAVI+AG    LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313
           AL  + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G  +QIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 314 AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC 373
           AVIDAG +  LV LL      I +EA WA+SN    G ++  K  V+E   +P  + L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 374 ADPE-IVTVCLKGLENI 389
           +  E I     + LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
           +S I +G  +QIQAVIDAG +  LV LL      I +EA WA+SN    G  EQI+ ++ 
Sbjct: 36  LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVID 94
Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393
            G +  L  LL   + +I+   L  L NI   G
Sbjct: 95  AGALPALVQLLSSPNEQILQEALWALSNIASGG 127

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 114/196 (58%), Gaps = 2/196 (1%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP 253
           LP + Q ++  D++ L++    LS ++ G N++IQAVI+AG    LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313
           AL  + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G  +QIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 314 AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC 373
           AVIDAG +  LV LL      I +EA WA+SN    G  EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSH 191
Query: 374 ADPEIVTVCLKGLENI 389
            + +I     + LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 15/204 (7%)
Query: 239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESC 298
           +V+ L  P    L  ALR +  I +G + Q Q VI+ GA+P L+ LL + +++ I +E+ 
Sbjct: 17  MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEAL 75
Query: 299 WTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYL 358
           W +SNI +G  +QIQAVIDAG +  LV LL      I +EA WA+SN    G  EQI+ +
Sbjct: 76  WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAV 134
Query: 359 VREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG 418
           +  G +  L  LL   + +I+   L  L NI   G             N+  + V+ A  
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGA 181
Query: 419 FKKIEDLKSHGNNGIREKAVTILE 442
            +K+E L+SH N  I+++A   LE
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 4/197 (2%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSN-LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
           LP + Q ++ DD +   +     S  LSDG N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
            AL  + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
           QAVIDAG +  LV LL      I +EA WA+SN    G  EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQS 190
Query: 373 CADPEIVTVCLKGLENI 389
             + +I     + LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  101 bits (251), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 15/191 (7%)
Query: 252 IPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQ 311
           + A R    I++  + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G  +Q
Sbjct: 30  LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQ 88
Query: 312 IQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371
           IQAVIDAG +  LV LL      I +EA WA+SN    G  EQI+ ++  G +  L  LL
Sbjct: 89  IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLL 147
Query: 372 LCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNN 431
              + +I+   L  L NI   G             N+  + V+ A   +K+E L+SH N 
Sbjct: 148 SSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENE 194
Query: 432 GIREKAVTILE 442
            I+++A   LE
Sbjct: 195 KIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 15/245 (6%)
Query: 150 EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA-----LAQLIHLD 204
           E L+ LL   +   +    R     L+ +  G    P   ++ ++ A     L +L+   
Sbjct: 5   EKLVKLLTSTDSETQKEAAR----DLAEIASG----PASAIKAIVDAGGVEVLVKLLTST 56
Query: 205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG 264
           D EV +     L+N++ G ++ I+A+++AG    LV+LL      V   A R + NI +G
Sbjct: 57  DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 116
Query: 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPL 324
            D   + +++ G V  L+ LL +   + ++KE+   ++NI +G  + I+A++DAG +  L
Sbjct: 117 PDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVL 175
Query: 325 VNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK 384
           V LL   + +++KEAA A++N   +G    IK +V  G ++ L  LL   D E+     +
Sbjct: 176 VKLLTSTDSEVQKEAARALAN-IASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQR 234
Query: 385 GLENI 389
            LENI
Sbjct: 235 ALENI 239

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 99  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 157
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 158 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 217
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 218 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 274
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 275 SDDINVVTCAAGILSNL-TCNNYKNKMMV 302

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 159
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 276
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 277 SDDINVVTCAAGILSNL-TCNNYKNKMMV 304

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 103 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 161
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 162 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 221
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 222 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 278
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 279 SDDINVVTCAAGILSNL-TCNNYKNKMMV 306

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 90  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 148
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 149 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 208
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 209 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 265
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 266 SDDINVVTCAAGILSNL-TCNNYKNKMMV 293

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 103 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 161
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 162 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 221
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 222 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 278
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 279 SDDINVVTCAAGILSNL-TCNNYKNKMMV 306

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 99  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 157
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 158 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 217
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 218 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 274
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 275 SDDINVVTCAAGILSNL-TCNNYKNKMMV 302

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 86  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 144
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 145 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 204
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 205 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 261
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 262 SDDINVVTCAAGILSNL-TCNNYKNKMMV 289

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 86  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 144
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 145 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 204
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 205 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 261
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 262 SDDINVVTCAAGILSNL-TCNNYKNKMMV 289

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 88  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 146
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 147 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 206
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 207 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 263
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 264 SDDINVVTCAAGILSNL-TCNNYKNKMMV 291

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 102 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 160
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 161 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 220
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 221 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 277
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 278 SDDINVVTCAAGILSNL-TCNNYKNKMMV 305

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 104 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 162
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 163 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 222
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 223 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 279
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 280 SDDINVVTCAAGILSNL-TCNNYKNKMMV 307

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 105 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 163
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
           L I T  L  L  G             PQ   + +R                        
Sbjct: 164 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 223
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 224 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 280
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 281 SDDINVVTCAAGILSNL-TCNNYKNKMMV 308

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G +P  VK+L SP D V   A+  L N++ H  G +  V     L  ++A LN+   +  
Sbjct: 98  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 156
Query: 168 LRIGTWTLS------------NLCKGKPQPPFDQVRPVL--------------------- 194
           L I T  L              L  G PQ   + +R                        
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
            PA+ +        +HL D  + +++N  WTL NLSD      Q  +E G+ G LV+LLG
Sbjct: 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 273
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
               +V+  A   + N+ T ++++ + ++
Sbjct: 274 SDDINVVTCAAGILSNL-TCNNYKNKMMV 301

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	449
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-169
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-44
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-36
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-163
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-161
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-42
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-37
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-102
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-52
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-34
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-100
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-72
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-67
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-53
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-28
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-86
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-75
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-68
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-60
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-34
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-82
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-78
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-59
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-52
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-77
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-49
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-47
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-65
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-53
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-25
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-48
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-46
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-50
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-39
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-30
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-19
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-31
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-30
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-25
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-32
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-19
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-19
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-12
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-09
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	9e-08
3grl_A	651	General vesicular transport factor P115; vesicle t	9e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-04
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	5e-06
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  483 bits (1244), Expect = e-169
 Identities = 235/425 (55%), Positives = 293/425 (68%), Gaps = 5/425 (1%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQ-AGIVPRFVEFLLREDYPR 81
           I   M+  ++S     QL A  +FR+LLS E + PIDEVI   G+V RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           LQFE+AWVLTNIASG S+ T+++I  GAVPIF++LL+S  +DV+EQAVWALGNI   S  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
           CR+ VL    L PLL   ++  RL+M R   W LSNLC+GK P P F +V P L  L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           + + D +VL + CW LS LSDG NDKIQAVI+AGVC  LVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           IVTGDD QTQ ++N  A+  LL LL ++ K+SIKKE+CWT+SNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
              L+++LQ AEF  +KEAAWAI+NAT  G+ EQIKYLV  GCIKPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
           V L GLENIL++GE  +        +N Y  L+E A G  KIE L+SH N  I +KA  +
Sbjct: 380 VALNGLENILRLGE--QEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437

Query: 441 LETYW 445
           +E Y+
Sbjct: 438 IEHYF 442

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  160 bits (406), Expect = 1e-44
 Identities = 57/344 (16%), Positives = 128/344 (37%), Gaps = 57/344 (16%)

Query: 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH--SPGCRNLVLHEEALIPLLA 157
           N ++          ++++ S S + +  A      +++   +P    ++     +   + 
Sbjct: 12  NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVE 71

Query: 158 QLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLS 217
            L                                            ++  +     W L+
Sbjct: 72  FLKRK-----------------------------------------ENCTLQFESAWVLT 90

Query: 218 NLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA 277
           N++ G + + + VI+AG     +ELL      V   A+  +GNI          V++   
Sbjct: 91  NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNI 150

Query: 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337
           +P LL L    ++ ++ + + W +SN+  G     +    +  +  L  LL  ++ D+  
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 210

Query: 338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK 397
           +A WA+S  +  G  ++I+ ++  G  + L +LL+  D ++V+  L+ + NI+       
Sbjct: 211 DACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT------ 263

Query: 398 NRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
                 GD  Q   ++      + +  L S     I+++A   +
Sbjct: 264 ------GDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTI 300

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  136 bits (344), Expect = 7e-36
 Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 16/251 (6%)

Query: 13  PSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVE 72
           P          L  +   ++  D  +  +A      L        I  VI AG+  R VE
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVE 241

Query: 73  FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWAL 132
            LL  +  ++   A   + NI +G  + T+V+++  A+   + LL+SP + ++++A W +
Sbjct: 242 -LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

Query: 133 GNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQV-- 190
            NI A +      V+ +  + P L  + + A     +   W ++N   G        +  
Sbjct: 301 SNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359

Query: 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNL-----------SDGTNDKIQAVIEAGVCGPL 239
              +  L  L+ + D ++++     L N+             G N     + EA     +
Sbjct: 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI 419

Query: 240 VELLGHPSPSV 250
             L  H +  +
Sbjct: 420 EFLQSHENQEI 430

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 96.5 bits (240), Expect = 8e-22
 Identities = 34/200 (17%), Positives = 78/200 (39%), Gaps = 4/200 (2%)

Query: 218 NLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCVINH 275
              +   + ++      +   ++E++   SP   + A +    +++ +      + +   
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 276 GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI 335
           G V   +  L      +++ ES W ++NI +GN  Q + VI AG +   + LL     D+
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP-EIVTVCLKGLENILKVGE 394
           +++A WA+ N     +     Y++    + PL  L    +   +    +  L N+ +   
Sbjct: 124 QEQAVWALGNIA-GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182

Query: 395 AKKNRGSTIGDVNQYARLVE 414
                      +N  + L+ 
Sbjct: 183 PPPEFAKVSPCLNVLSWLLF 202

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  469 bits (1209), Expect = e-163
 Identities = 230/448 (51%), Positives = 295/448 (65%), Gaps = 8/448 (1%)

Query: 2   QSQLFLPSAPAPSLNLQTKL-EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
            S     S+ +      ++L + LP M   + SDD   QL A  +FR++LS E   PID 
Sbjct: 66  DSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDV 125

Query: 61  VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
           VIQAG+VPR VEF+       LQ EAAW LTNIASGTS  TKV++D  AVP+F++LL + 
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           S +V+EQA+WALGN+   S   R+ VL   A+ P+L   N + + S++R  TWTLSNLC+
Sbjct: 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCR 244

Query: 181 GK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPL 239
           GK PQP +  V   LP LA+LI+  D E L + CW +S LSDG  + IQAVI+  +   L
Sbjct: 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304

Query: 240 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCW 299
           VELL H S  V  PALR VGNIVTG+D QTQ VIN G +P L  LL ++ K++IKKE+CW
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACW 363

Query: 300 TVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT--QEQIKY 357
           T+SNITAGN +QIQAVIDA LI PLV LL+ AE+  KKEA WAISNA+  G    + I+Y
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423

Query: 358 LVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAE 417
           LV +GCIKPLCDLL  AD  I+ V L  LENILK+GEA K       ++N+ A  +E A 
Sbjct: 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL--NINENADFIEKAG 481

Query: 418 GFKKIEDLKSHGNNGIREKAVTILETYW 445
           G +KI + + + N+ I EKA  I+ETY+
Sbjct: 482 GMEKIFNCQQNENDKIYEKAYKIIETYF 509

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  464 bits (1194), Expect = e-161
 Identities = 196/442 (44%), Positives = 273/442 (61%), Gaps = 13/442 (2%)

Query: 9   SAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVP 68
           +      N  T    +  +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P
Sbjct: 44  AMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 103

Query: 69  RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQA 128
           +FV FL + D   +QFE+AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQA
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163

Query: 129 VWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH----ARLSMLRIGTWTLSNLCKGK-P 183
           VWALGNI       R+LV+   A+ PLLA L            LR  TWTLSNLC+ K P
Sbjct: 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 223

Query: 184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL 243
            PP D V  +LP L +L+H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LL
Sbjct: 224 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283

Query: 244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303
           G     ++ PALR +GNIVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SN
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSN 342

Query: 304 ITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGC 363
           ITAG + QIQ V++ GL+  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G 
Sbjct: 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402

Query: 364 IKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIE 423
           I+PL +LL   D +I+ V L  + NI +  E        +G+  + + ++E   G  KIE
Sbjct: 403 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIE 455

Query: 424 DLKSHGNNGIREKAVTILETYW 445
            L+ H N  + + ++ ++E Y+
Sbjct: 456 ALQRHENESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  156 bits (396), Expect = 1e-42
 Identities = 72/364 (19%), Positives = 135/364 (37%), Gaps = 22/364 (6%)

Query: 92  NIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GCRNLVLHEE 150
           +  +   + +     + +V   VK + S + + + QA  A   +++       + ++   
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQV-RPVLPALAQLIHLDDEEVL 209
            +   ++ L +     +     W L+N+  G  +     V    +PA   L+      + 
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 210 RNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT-----VGNIVTG 264
               W L N++   +     VI+ G   PL+ LL  P  S L           + N+   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPL 324
            +           +P L+ LL +N  + +  +SCW +S +T G  ++I+ V+  G++  L
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 325 VNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK 384
           V LL   E  I   A  AI N    GT EQ + ++  G +     LL      I      
Sbjct: 280 VKLLGATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 385 GLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY 444
            + NI            T G  +Q  + V        +  + S  +   +++A   +  Y
Sbjct: 339 TMSNI------------TAGRQDQ-IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

Query: 445 WLKG 448
              G
Sbjct: 386 TSGG 389

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  142 bits (358), Expect = 2e-37
 Identities = 59/275 (21%), Positives = 117/275 (42%), Gaps = 11/275 (4%)

Query: 7   LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGI 66
           L     P+  L    +ILP +V  +  +D  +  ++      L +   +  I+ V++ G+
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGV 275

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           VP+ V+ LL      +   A   + NI +GT   T+ +ID GA+ +F  LL +P  ++++
Sbjct: 276 VPQLVK-LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
           +A W + NI A        V++   L+P L  +   A     +   W ++N   G     
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393

Query: 187 FDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNL------SDGTNDKIQAVIEAGVCGP 238
              +    ++  L  L+   D ++++ +   +SN+         T      + E G    
Sbjct: 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 453

Query: 239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
           +  L  H + SV   +L  +    + ++ + Q V+
Sbjct: 454 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 25/149 (16%), Positives = 39/149 (26%), Gaps = 14/149 (9%)

Query: 294 KKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE 353
                 T  +  A              +  +V  +     + + +A  A         Q 
Sbjct: 32  DSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91

Query: 354 QIKYLVREGCIKPLCDLLLCAD-PEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARL 412
            I  ++R G I      L   D   I       L NI              G   Q   +
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS------------GTSEQTKAV 139

Query: 413 VEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
           V+          L +  +  I E+AV  L
Sbjct: 140 VD-GGAIPAFISLLASPHAHISEQAVWAL 167

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  318 bits (815), Expect = e-102
 Identities = 70/432 (16%), Positives = 141/432 (32%), Gaps = 18/432 (4%)

Query: 22  EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR 81
           +++ A+V  + + ++             LS  R   +  + ++G +P  V+ +L      
Sbjct: 56  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVK-MLGSPVDS 113

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           + F A   L N+          +   G +   V LL   +          L  +   +  
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI 201
            + ++L       L+  +  +    +L   +  L  L       P       + AL   +
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233

Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
               + +++N  WTL NLSD    +       G+ G LV+LLG    +V+  A   + N+
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNR---KQIQAVID 317
              +      V   G +  L+  ++    ++ I + +   + ++T+ ++       AV  
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377
              +  +V LL         +A   +     A        L  +G I  L  LL+ A  +
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQD 409

Query: 378 IVTVCLKGLENILKVGEAKKNRG--------STIGDVNQYARLVEGAEGFKKIEDLKSHG 429
                  G      V   +              +        ++ G         L    
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 469

Query: 430 NNGIREKAVTIL 441
              I+  A  +L
Sbjct: 470 IENIQRVAAGVL 481

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  222 bits (568), Expect = 3e-66
 Identities = 74/449 (16%), Positives = 140/449 (31%), Gaps = 47/449 (10%)

Query: 20  KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY 79
           K   +PA+V  + S  +S+   A T    LL  +    +  V  AG + + V  LL +  
Sbjct: 96  KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVA-LLNKTN 153

Query: 80  PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSD-DVREQAVWALGNIVAH 138
            +        L  +A G   +  +++  G     V ++ + +   +       L   ++ 
Sbjct: 154 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV-LSV 212

Query: 139 SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALA 198
               +  ++     +  L          +++   WTL NL     +   + +  +L  L 
Sbjct: 213 CSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLV 269

Query: 199 QLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL--GHPSPSVLIPALR 256
           QL+  DD  V+      LSNL+         V + G    LV  +        +  PA+ 
Sbjct: 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329

Query: 257 TVGNIVTGDD---FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313
            + ++ +           V  H  +P ++ LL +        ++   +    A       
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHA 388

Query: 314 AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK--------------------AGTQE 353
            + + G I  LV LL  A  D ++  +   +                        A    
Sbjct: 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448

Query: 354 QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV 413
               +     I     LL      I  V    L  + +  E               A  +
Sbjct: 449 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAI 494

Query: 414 EGAEGFKKIEDLKSHGNNGIREKAVTILE 442
           E       + +L    N G+   A  +L 
Sbjct: 495 EAEGATAPLTELLHSRNEGVATYAAAVLF 523

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  219 bits (560), Expect = 5e-65
 Identities = 85/437 (19%), Positives = 150/437 (34%), Gaps = 31/437 (7%)

Query: 15  LNLQTKLEI----LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRF 70
           +N Q   E+    +P +   +  +D  +  +AA    +L   E S     +    +V   
Sbjct: 3   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAI 61

Query: 71  VEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVW 130
           V  +   +        A  L N++         +   G +P  VK+L SP D V   A+ 
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 120

Query: 131 ALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQV 190
            L N++ H  G +  V      +  +  L     +  L I T  L  L  G  +     +
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179

Query: 191 RP-VLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP 248
                 AL  ++     E++L      L  LS  +++K  A++EAG    L   L  PS 
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQ 238

Query: 249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308
            ++   L T+ N+    D  T+     G +  L+ LL ++    +   +   +SN+T  N
Sbjct: 239 RLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNN 294

Query: 309 RKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCI 364
            K    V   G I  LV  +  A    DI + A  A+ + T    +       +     +
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354

Query: 365 KPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED 424
             +  LL       +     GL   L +  A                 +       ++  
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQ 401

Query: 425 LKSHGNNGIREKAVTIL 441
           L    +   + +     
Sbjct: 402 LLVRAHQDTQRRTSMGG 418

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  184 bits (468), Expect = 5e-52
 Identities = 64/372 (17%), Positives = 117/372 (31%), Gaps = 34/372 (9%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
              A+V  + +      L   ++  ++LS+  S     +++AG +       L +   RL
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL-HLTDPSQRL 240

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
                W L N++      TK     G +   V+LL S   +V   A   L N+  ++   
Sbjct: 241 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297

Query: 143 RNLVLHEEALIPLLAQL-NEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPV----LPAL 197
           + +V     +  L+  +     R  +       L +L     +    Q        LP +
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357

Query: 198 AQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257
            +L+H      L      L             + E G    LV+LL              
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417

Query: 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317
                  +  + + ++                      E C    +I A +      +  
Sbjct: 418 GTQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRG 455

Query: 318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377
              I   V LL     +I++ AA  +     A  +E  + +  EG   PL +LL   +  
Sbjct: 456 LNTIPLFVQLLYSPIENIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPLTELLHSRNEG 513

Query: 378 IVTVCLKGLENI 389
           + T     L  +
Sbjct: 514 VATYAAAVLFRM 525

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  134 bits (339), Expect = 3e-34
 Identities = 55/327 (16%), Positives = 105/327 (32%), Gaps = 31/327 (9%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR-EDYPR 81
           +L  +V  + SDD ++   AA     L           V Q G +   V  +LR  D   
Sbjct: 264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-KMMVCQVGGIEALVRTVLRAGDRED 322

Query: 82  LQFEAAWVLTNIASGTSVNTKV---LIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH 138
           +   A   L ++ S           +  H  +P+ VKLL  PS     +A   L   +A 
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 139 SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALA 198
            P     +  + A IP L QL   A     R  +   +                      
Sbjct: 383 CPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQ-------------------Q 422

Query: 199 QLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258
            +  +  EE++      L  L+   +++   +         V+LL  P  ++   A   +
Sbjct: 423 FVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 481

Query: 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA 318
             +    +   + +   GA   L  LL + ++  +   +   +  ++    +  +  +  
Sbjct: 482 CELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRLSV 539

Query: 319 GLIVPLVNLLQDAEFDIKKEAAWAISN 345
            L      L +       + A   +  
Sbjct: 540 ELTSS---LFRTEPMAWNETADLGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 66.9 bits (163), Expect = 5e-12
 Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 38  MQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97
           +          L     +  +  +     +P FV+ LL      +Q  AA VL  +A   
Sbjct: 432 IVEGCTGALHILARDVHNRIV--IRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQDK 488

Query: 98  SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLL- 156
               + +   GA     +LL S ++ V   A   L  +    P      L  E    L  
Sbjct: 489 E-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547

Query: 157 ---AQLNEHARLSMLRI 170
                 NE A L +   
Sbjct: 548 TEPMAWNETADLGLDIG 564

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  308 bits (790), Expect = e-100
 Identities = 73/431 (16%), Positives = 141/431 (32%), Gaps = 18/431 (4%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
           ++ A+V  + + ++             LS  R   +  + ++G +P  V+ +L      +
Sbjct: 60  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVK-MLGSPVDSV 117

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
            F A   L N+          +   G +   V LL   +          L  +   +   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH 202
           + ++L       L+  +  +    +L   +  L  L       P       + AL   + 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262
              + +++N  WTL NLSD    +       G+ G LV+LLG    +V+  A   + N+ 
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 263 TGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGN---RKQIQAVIDA 318
             +      V   G +  L+  ++    ++ I + +   + ++T+ +        AV   
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI 378
             +  +V LL         +A   +     A        L  +G I  L  LL+ A  + 
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 379 VTVCLKGLENILKVGEAKKN--RGSTIGDVNQYARLVEG------AEGFKKIEDLKSHGN 430
                 G      V   +         G ++  AR V                 L     
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 473

Query: 431 NGIREKAVTIL 441
             I+  A  +L
Sbjct: 474 ENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  236 bits (604), Expect = 2e-72
 Identities = 88/425 (20%), Positives = 150/425 (35%), Gaps = 27/425 (6%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
           +P +   +  +D  +  +AA    +L   E S     +    +V   V  +   +     
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 84  FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
              A  L N++         +   G +P  VK+L SP D V   A+  L N++ H  G +
Sbjct: 78  RCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP-VLPALAQLI- 201
             V     L  ++A LN    +  L I T  L  L  G  +     +      AL  ++ 
Sbjct: 137 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
               E++L      L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
               D  T+     G +  L+ LL  +   ++   +   +SN+T  N K    V   G I
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 322 VPLVNLLQDA--EFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPE 377
             LV  +  A    DI + A  A+ + T    +       +     +  +  LL      
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA 437
            +     GL   L +  A              A L E      ++  L    +   + + 
Sbjct: 371 PLIKATVGLIRNLALCPANH------------APLRE-QGAIPRLVQLLVRAHQDTQRRT 417

Query: 438 VTILE 442
                
Sbjct: 418 SMGGT 422

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  223 bits (571), Expect = 1e-67
 Identities = 73/443 (16%), Positives = 140/443 (31%), Gaps = 45/443 (10%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
           +PA+V  + S  +S+   A T    LL  +       V  AG + + V  LL +   +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVA-LLNKTNVKFL 160

Query: 84  FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
                 L  +A G   +  +++  G     V ++ + + +        +  +++     +
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220

Query: 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL 203
             ++    +  L   L       +++   WTL NL     +   + +  +L  L QL+  
Sbjct: 221 PAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS 277

Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL--GHPSPSVLIPALRTVGNI 261
           DD  V+      LSNL+         V + G    LV  +        +  PA+  + ++
Sbjct: 278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337

Query: 262 VTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA 318
            +           V  H  +P ++ LL +        ++   +    A        + + 
Sbjct: 338 TSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQ 396

Query: 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATK--------------------AGTQEQIKYL 358
           G I  LV LL  A  D ++  +   +                        A        +
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456

Query: 359 VREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG 418
                I     LL      I  V    L  + +  E               A  +E    
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGA 502

Query: 419 FKKIEDLKSHGNNGIREKAVTIL 441
              + +L    N G+   A  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  202 bits (515), Expect = 2e-59
 Identities = 62/349 (17%), Positives = 115/349 (32%), Gaps = 16/349 (4%)

Query: 93  IASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEAL 152
           + +  +      +   A+P   KLL      V  +A   +  +         ++   + +
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNV 212
             ++  +     +   R    TL NL   +           +PAL +++    + VL   
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121

Query: 213 CWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCV 272
             TL NL         AV  AG    +V LL   +   L      +  +  G+      +
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 273 INHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE 332
           +  G    L+ ++   +       +   V  + +       A+++AG +  L   L D  
Sbjct: 182 LASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240

Query: 333 FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392
             + +   W + N + A T++       EG +  L  LL   D  +VT     L N+   
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 393 GEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
               K     +  V     LV           L++     I E A+  L
Sbjct: 297 NYKNKMM---VCQVGGIEALVRTV--------LRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  193 bits (491), Expect = 5e-56
 Identities = 64/389 (16%), Positives = 138/389 (35%), Gaps = 24/389 (6%)

Query: 58  IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
            D  +    +P   + LL ++   +  +AA ++  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 118 ASPSD-DVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS 176
            + +D +        L N+ +H       +     +  L+  L      S+L     TL 
Sbjct: 69  QNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 126

Query: 177 NLCKGKPQPPFDQVRP-VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGV 235
           NL   +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 236 CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKK 295
              LV ++   +   L+     V  +++        ++  G +  L   L  +  + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 245

Query: 296 ESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI 355
              WT+ N++    KQ       GL+  LV LL   + ++   AA  +SN T     +  
Sbjct: 246 NCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNK 301

Query: 356 KYLVREGCIKPLCDLLLCADP--EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARL- 412
             + + G I+ L   +L A    +I    +  L ++           ++     + A+  
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL-----------TSRHQEAEMAQNA 350

Query: 413 VEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
           V    G   +  L    ++    KA   L
Sbjct: 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGL 379

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  185 bits (471), Expect = 4e-53
 Identities = 64/372 (17%), Positives = 117/372 (31%), Gaps = 34/372 (9%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
              A+V  + +      L   ++  ++LS+  S     +++AG +       L +   RL
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGL-HLTDPSQRL 243

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
                W L N++      TK     G +   V+LL S   +V   A   L N+  ++   
Sbjct: 244 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 143 RNLVLHEEALIPLLAQL-NEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPV----LPAL 197
           + +V     +  L+  +     R  +       L +L     +    Q        LP +
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 198 AQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257
            +L+H      L      L             + E G    LV+LL              
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317
                  +  + + ++                      E C    +I A +      +  
Sbjct: 421 GTQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRG 458

Query: 318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377
              I   V LL     +I++ AA  +     A  +E  + +  EG   PL +LL   +  
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPLTELLHSRNEG 516

Query: 378 IVTVCLKGLENI 389
           + T     L  +
Sbjct: 517 VATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  116 bits (292), Expect = 3e-28
 Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 28/287 (9%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYPR 81
           +L  +V  + SDD ++   AA     L           V Q G +   V  +LR  D   
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-KMMVCQVGGIEALVRTVLRAGDRED 325

Query: 82  LQFEAAWVLTNIASGTSVNTKV---LIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH 138
           +   A   L ++ S           +  H  +P+ VKLL  PS     +A   L   +A 
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 139 SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALA 198
            P     +  + A IP L QL   A     R  +   +     +                
Sbjct: 386 CPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV-------------- 430

Query: 199 QLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258
                  EE++      L  L+   +++I  +         V+LL  P  ++   A   +
Sbjct: 431 -----RMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305
             +    +   + +   GA   L  LL + ++  +   +   +  ++
Sbjct: 485 CELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  279 bits (716), Expect = 1e-86
 Identities = 70/431 (16%), Positives = 138/431 (32%), Gaps = 18/431 (4%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
           ++ A+V  + + ++       +     LS  R   +  + ++G +P  V  +L      +
Sbjct: 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVN-MLGSPVDSV 250

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
            F A   L N+          +   G +   V LL   +          L  +   +   
Sbjct: 251 LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310

Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH 202
           + ++L       L+  +  +    +L   +  L  L       P       + AL   + 
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 370

Query: 203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262
              + +++N  WTL NLSD    +       G+ G LV+LLG    +V+  A   + N+ 
Sbjct: 371 DPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427

Query: 263 TGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAG---NRKQIQAVIDA 318
             +      V   G +  L+  ++    ++ I + +   + ++T+          AV   
Sbjct: 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487

Query: 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI 378
             +  +V LL         +A   +     A        L  +G I  L  LL+ A  + 
Sbjct: 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 379 VTVCLKGLENILKVGEAKKNRG--------STIGDVNQYARLVEGAEGFKKIEDLKSHGN 430
                 G      V   +              +        ++ G         L     
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 431 NGIREKAVTIL 441
             I+  A  +L
Sbjct: 607 ENIQRVAAGVL 617

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  249 bits (638), Expect = 2e-75
 Identities = 83/425 (19%), Positives = 147/425 (34%), Gaps = 27/425 (6%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
            +P +   +  +D  +  +AA    +L   E S     +    +V   V  +   +    
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVET 209

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
               +  L N++         +   G +P  V +L SP D V   A+  L N++ H  G 
Sbjct: 210 ARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268

Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP-VLPALAQLI 201
           +  V     L  ++A LN    +  L I T  L  L  G  +     +      AL  ++
Sbjct: 269 KMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327

Query: 202 -HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
                E++L      L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N
Sbjct: 328 RTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386

Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
           +    D  T+     G +  L+ LL ++    +   +   +SN+T  N K    V   G 
Sbjct: 387 L---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGG 442

Query: 321 IVPLVNLLQDA--EFDIKKEAAWAISNAT--KAGTQEQIKYLVREGCIKPLCDLLLCADP 376
           I  LV  +  A    DI + A  A+ + T      +     +     +  +  LL     
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502

Query: 377 EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREK 436
             +     GL   L +  A                 +       ++  L    +   + +
Sbjct: 503 WPLIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQRR 549

Query: 437 AVTIL 441
                
Sbjct: 550 TSMGG 554

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  232 bits (592), Expect = 1e-68
 Identities = 71/420 (16%), Positives = 131/420 (31%), Gaps = 23/420 (5%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYP-RL 82
                      D   Q       R      R+    E +  G+     +F        + 
Sbjct: 69  FNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNVQR 123

Query: 83  QFEAAWVLTNIASG-TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
             E + +L +      +      +   A+P   KLL      V  +A   +  +      
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI 201
              ++   + +  ++  +     +   R  + TL NL   +           +PAL  ++
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
               + VL +   TL NL         AV  AG    +V LL   +   L      +  +
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303

Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
             G+      ++  G    L+ ++   +       +   V  + +       A+++AG +
Sbjct: 304 AYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362

Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTV 381
             L   L D    + +   W + N + A T++       EG +  L  LL   D  +VT 
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTC 418

Query: 382 CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
               L N+       K     +  V     LV           L++     I E A+  L
Sbjct: 419 AAGILSNLTCNNYKNKMM---VCQVGGIEALVRTV--------LRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  209 bits (533), Expect = 2e-60
 Identities = 64/374 (17%), Positives = 118/374 (31%), Gaps = 34/374 (9%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
              A+V  + +      L   ++  ++LS+  S     +++AG +       L +   RL
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGL-HLTDPSQRL 376

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
                W L N++      TK     G +   V+LL S   +V   A   L N+  ++   
Sbjct: 377 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433

Query: 143 RNLVLHEEALIPLLAQL-NEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPV----LPAL 197
           + +V     +  L+  +     R  +       L +L          Q        LP +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493

Query: 198 AQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257
            +L+H      L      L             + E G    LV+LL              
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553

Query: 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317
                  +  + + ++                      E+C    +I A +      +  
Sbjct: 554 GTQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVIRG 591

Query: 318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377
              I   V LL     +I++ AA  +     A  +E  + +  EG   PL +LL   +  
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPLTELLHSRNEG 649

Query: 378 IVTVCLKGLENILK 391
           + T     L  + +
Sbjct: 650 VATYAAAVLFRMSE 663

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  134 bits (339), Expect = 4e-34
 Identities = 55/336 (16%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 22  EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYP 80
            +L  +V  + SDD ++   AA     L           V Q G +   V  +LR  D  
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-KMMVCQVGGIEALVRTVLRAGDRE 457

Query: 81  RLQFEAAWVLTNIASG---TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137
            +   A   L ++ S      +    +  H  +P+ VKLL  PS     +A   L   +A
Sbjct: 458 DITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 517

Query: 138 HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPAL 197
             P     +  + A IP L QL   A     R  +   +                     
Sbjct: 518 LCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQ------------------- 557

Query: 198 AQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257
             +  +  EE++      L  L+   +++   +         V+LL  P  ++   A   
Sbjct: 558 QFVEGVRMEEIVEACTGALHILARDIHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGV 616

Query: 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317
           +  +    +   + +   GA   L  LL + ++  +   +   +  ++    +  +  + 
Sbjct: 617 LCELAQDKE-AAEAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRLS 674

Query: 318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE 353
             L   L         +         +     G ++
Sbjct: 675 VELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQ 710

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  252 bits (647), Expect = 3e-82
 Identities = 88/250 (35%), Positives = 133/250 (53%), Gaps = 15/250 (6%)

Query: 193 VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
            LP + Q ++ DD +   +     S +    N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
            AL  + NI +G + Q Q VI+ GA+P L+ LL ++  + I +E+ W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
           QAVIDAG +  LV LL      I +EA WA+SN    G  EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190

Query: 373 CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNG 432
             + +I+   L  L NI   G              +  + V+ A   +K+E L+SH N  
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 433 IREKAVTILE 442
           I+++A   LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  243 bits (622), Expect = 1e-78
 Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 4/243 (1%)

Query: 22  EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR 81
             LP M   + SDD   QL A  +F ++LS + +  I  VI AG +P  V+ L   +  +
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQ 69

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           +  EA W L+NIASG +   + +ID GA+P  V+LL+SP++ + ++A+WAL NI +    
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVR-PVLPALAQL 200
               V+   A +P L QL       +L+   W LSN+  G  +     +    LPAL QL
Sbjct: 130 QIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
           +   +E++L+   W LSN++ G N++ QAV EAG    L +L  H +  +   A   +  
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 261 IVT 263
           + +
Sbjct: 249 LQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  193 bits (493), Expect = 3e-59
 Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 12/254 (4%)

Query: 58  IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
                    +P+  +  L  D  + Q  A    + I S  +   + +ID GA+P  V+LL
Sbjct: 5   HHHHHHGSELPQMTQ-QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 118 ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177
           +SP++ + ++A+WAL NI +        V+   A +P L QL       +L+   W LSN
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSN 122

Query: 178 LCKGKPQPPFDQVRPV-----LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE 232
           +  G      +Q++ V     LPAL QL+   +E++L+   W LSN++ G N++IQAVI+
Sbjct: 123 IASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178

Query: 233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS 292
           AG    LV+LL  P+  +L  AL  + NI +G + Q Q V   GA+  L  L  ++  + 
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ-SHENEK 237

Query: 293 IKKESCWTVSNITA 306
           I+KE+   +  + +
Sbjct: 238 IQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  175 bits (446), Expect = 2e-52
 Identities = 84/245 (34%), Positives = 128/245 (52%), Gaps = 5/245 (2%)

Query: 147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVR--PVLPALAQLIHLD 204
            H  + +P + Q      +      T   S +           V     LPAL QL+   
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSP 66

Query: 205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG 264
           +E++L+   W LSN++ G N++IQAVI+AG    LV+LL  P+  +L  AL  + NI +G
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPL 324
            + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G  +QIQAVIDAG +  L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 325 VNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK 384
           V LL      I +EA WA+SN    G  EQ + +   G ++ L  L    + +I     +
Sbjct: 186 VQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244

Query: 385 GLENI 389
            LE +
Sbjct: 245 ALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
            LPA+V  + S +  +  EA      + +   +  I  VI AG +P  V+ LL     ++
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQ-LLSSPNEQI 196

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH 138
             EA W L+NIASG +   + + + GA+    +L +  ++ ++++A  AL  + +H
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 276 GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI 335
             +P +   L N+     +  +    S I +   +QIQAVIDAG +  LV LL      I
Sbjct: 12  SELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395
            +EA WA+SN   +G  EQI+ ++  G +  L  LL   + +I+   L  L NI   G  
Sbjct: 71  LQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 396 KKN 398
           +  
Sbjct: 130 QIQ 132

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 309 RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLC 368
           R           +  +   L   +   +  A    S        EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALV 60

Query: 369 DLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH 428
            LL   + +I+   L  L NI              G   Q  + V  A     +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 429 GNNGIREKAVTIL 441
            N  I ++A+  L
Sbjct: 108 PNEQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  239 bits (611), Expect = 2e-77
 Identities = 73/197 (37%), Positives = 113/197 (57%), Gaps = 2/197 (1%)

Query: 193 VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
            LP + Q ++  D++ L++    LS ++ G N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
            AL  + NI +G + Q Q VI+ GA+P L+ LL ++  + I +E+ W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
           QAVIDAG +  LV LL      I +EA WA+SN    G  EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQS 190

Query: 373 CADPEIVTVCLKGLENI 389
             + +I     + LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  165 bits (421), Expect = 3e-49
 Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 11/210 (5%)

Query: 59  DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA 118
                   +P+ V+ L   D  +    A   L+ IASG +   + +ID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178
           SP++ + ++A+WAL NI +        V+   AL  L+  L       +L+   W LSN+
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 123

Query: 179 CKGKPQPPFDQVRPV-----LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA 233
             G      +Q++ V     LPAL QL+   +E++L+   W LSN++ G N++ QAV EA
Sbjct: 124 ASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179

Query: 234 GVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
           G    L +L  H +  +   A   +  + +
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  161 bits (410), Expect = 2e-47
 Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 43/241 (17%)

Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
             +P  V+ L SP     + A+  L  I +        V+   AL               
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL--------------- 56

Query: 168 LRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI 227
                                      PAL QL+   +E++L+   W LSN++ G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 228 QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN 287
           QAVI+AG    LV+LL  P+  +L  AL  + NI +G + Q Q VI+ GA+P L+ LL +
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149

Query: 288 NHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT 347
            +++ I +E+ W +SNI +G  +Q QAV +AG +  L  L       I+KEA  A+    
Sbjct: 150 PNEQ-ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

Query: 348 K 348
            
Sbjct: 209 S 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 23  ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
            LPA+V  + S +  +  EA      + S      I  VI AG +P  V+ LL     ++
Sbjct: 97  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQ-LLSSPNEQI 154

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH 138
             EA W L+NIASG +   + + + GA+    +L +  ++ ++++A  AL  + +H
Sbjct: 155 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  211 bits (539), Expect = 6e-65
 Identities = 62/351 (17%), Positives = 120/351 (34%), Gaps = 35/351 (9%)

Query: 39  QLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98
           Q+ A  +            +D+              +          A  VL  ++    
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 99  VNTKVLIDHGAVPIFVKLLASPSD-----------DVREQAVWALGNIVAHSPGCRNLVL 147
            +   + + G +    +LL    +            +R  A  AL N+       +  + 
Sbjct: 65  -HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVR--PVLPALAQL-IHLD 204
             +  +  L    +     + ++    L NL           +R    + AL +  + + 
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 205 DEEVLRNVCWTLSNLS-DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP-------ALR 256
            E  L++V   L NLS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI 316
            V +++  ++   Q +  +  +  LL  L  +H  +I   +C T+ N++A N K  +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 317 DAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG-TQEQIKYLVREGCIKP 366
           D G +  L NL+      I   +A A+ N       + +   ++  G   P
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 83.4 bits (206), Expect = 8e-18
 Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 14/197 (7%)

Query: 216 LSNLSDGTNDKIQAVI-EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN 274
           L  +        +               +  P    + PA+  +  +   ++     +  
Sbjct: 13  LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNE 71

Query: 275 HGAVPYLLALL----------INNHKKSIKKESCWTVSNITAGNRKQIQAVI-DAGLIVP 323
            G +  +  LL           +++  ++++ +   ++N+T G+      +    G +  
Sbjct: 72  LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 131

Query: 324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVC 382
           LV  L+    D+++  A  + N +        K L   G +K L +  L       +   
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 383 LKGLENILKVGEAKKNR 399
           L  L N+       K  
Sbjct: 192 LSALWNLSAHCTENKAD 208

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  183 bits (465), Expect = 5e-53
 Identities = 53/365 (14%), Positives = 111/365 (30%), Gaps = 36/365 (9%)

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           +P+ V+  L     + Q   A+ + +         + +   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQ-YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
            A  AL N+V  S   +     +  +   ++ L       + +  T  L NL        
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 187 FDQVRPVLPALAQLI----------------HLDDEEVLRNVCWTLSNLSDGTNDKIQAV 230
            + +   LP LA  +                 + D EV  N    L NLS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 231 IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK 290
             +G+   L+  + +   +           +    +   +           L     N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 291 KSIKKESCWTVSNITAGNRKQIQA-------------VIDAGLIVPLVNLLQDAEFDIKK 337
                  C++  +    N                   +  +  I   +NL+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 338 EAAWA-----ISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392
           EA         ++     +       ++E  +  +  LL   + ++V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 393 GEAKK 397
               +
Sbjct: 362 PLLHR 366

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  106 bits (264), Expect = 4e-25
 Identities = 45/363 (12%), Positives = 101/363 (27%), Gaps = 45/363 (12%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL-------- 75
           +   V+ +    N+   +  T     LS    L   E + A  +P   + ++        
Sbjct: 88  IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK--EELIADALPVLADRVIIPFSGWCD 145

Query: 76  -------REDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQA 128
                      P + F A   L N++S  +    +    G +   +  + +     R   
Sbjct: 146 GNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD 205

Query: 129 VWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG------- 181
                 +         L          L     +A       G ++  +           
Sbjct: 206 KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCP 265

Query: 182 --------KPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK-----IQ 228
                   K          +   L  +     +  L      L NL+             
Sbjct: 266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQL 325

Query: 229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN 288
             ++      +  LL   +  V+      + N+          V+ +   P +  LL ++
Sbjct: 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSH 383

Query: 289 HKKSIKKE-----SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD-IKKEAAWA 342
              +   E     +C+TV N+ A   +  +    + ++  ++NL + +      + A   
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

Query: 343 ISN 345
           +S+
Sbjct: 444 LSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 97.6 bits (242), Expect = 3e-22
 Identities = 60/450 (13%), Positives = 132/450 (29%), Gaps = 75/450 (16%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
           +  +V  + S + ++Q  AA   R L     +    E  +   +   V  L R     +Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALRNL-VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 84  FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP----------------SDDVREQ 127
            +   +L N++S   +  K  +   A+P+    +  P                  +V   
Sbjct: 105 KQLTGLLWNLSSTDEL--KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 128 AVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF 187
           A   L N+ + +   R  + +   LI  L           ++          K       
Sbjct: 163 ATGCLRNL-SSADAGRQTMRNYSGLIDSLMAY--------VQNCVAASRCDDK------- 206

Query: 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS 247
                 +     ++H     +   V      L     +        G      + + + +
Sbjct: 207 -----SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261

Query: 248 PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG 307
               +P           +   +  + +  A+   L L+  + K +  +     + N+TA 
Sbjct: 262 YDCPLPEE-------ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314

Query: 308 NRK-----QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREG 362
                        +    +  +  LLQ    D+ +  A  +SN ++      +  ++   
Sbjct: 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR---HPLLHRVMGNQ 371

Query: 363 CIKPLCDLLLCADP------EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA 416
               +  LL           +I++     + N+             +    Q A+    +
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL-------------MASQPQLAKQYFSS 418

Query: 417 EGFKKIEDL-KSHGNNGIREKAVTILETYW 445
                I +L +S  +    E A  +L   W
Sbjct: 419 SMLNNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
           I   V  L   +   +   A+ I +      +   + + + G I  L DLL   +  +  
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
                L N+                 N+     +     + +  L+  GN  I+++   +
Sbjct: 63  AAAGALRNL-----------VFRSTTNKLETRRQNG-IREAVSLLRRTGNAEIQKQLTGL 110

Query: 441 L 441
           L
Sbjct: 111 L 111

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  182 bits (464), Expect = 8e-53
 Identities = 62/340 (18%), Positives = 118/340 (34%), Gaps = 27/340 (7%)

Query: 31  VWSDDNSMQLEAATQFRRLLSIERSLP---IDEVIQAGIVPRFVEFLLREDYPRLQFEAA 87
           + S  +  +     +   LL   R+      +            +  +          A 
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169

Query: 88  WVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNIV 136
            VL  ++     +   + + G +    +LL              S  +R  A  AL N+ 
Sbjct: 170 CVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228

Query: 137 AHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVR--PVL 194
                 +  +   +  +  L    +     + ++    L NL           +R    +
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288

Query: 195 PALAQL-IHLDDEEVLRNVCWTLSNLS-DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
            AL +  + +  E  L++V   L NLS   T +K       G    LV  L + S +  +
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348

Query: 253 P-------ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305
                    LR V +++  ++   Q +  +  +  LL  L  +H  +I   +C T+ N++
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLS 407

Query: 306 AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
           A N K  +A+ D G +  L NL+      I   +A A+ N
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  169 bits (430), Expect = 6e-48
 Identities = 71/438 (16%), Positives = 153/438 (34%), Gaps = 65/438 (14%)

Query: 17  LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVI-QAGIVPRFVEFLL 75
           L TK+E++ ++++ + + D   + + +   R LL++  S      + Q+G +P  ++ L 
Sbjct: 27  LGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQSGCLPLLIQLLH 80

Query: 76  RED-----------YPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKL-------- 116
             D               +  A+  L NI      + +   +   + +  ++        
Sbjct: 81  GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140

Query: 117 ----------------LASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL- 159
                           + +P +     AV  L  + +     R+ +     L  +   L 
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQ 199

Query: 160 ---------NEHARLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIHLDDEEV 208
                    N+H  +++ R     L+NL  G    +     ++  + AL   +  + E++
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 259

Query: 209 LRNVCWTLSNLSDGTNDKIQAVI-EAGVCGPLVELLGHPS-PSVLIPALRTVGNI-VTGD 265
            + +   L NLS   +   +  + E G    L+E        S L   L  + N+     
Sbjct: 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319

Query: 266 DFQTQCVINHGAVPYLLALLINNHKKS---IKKESCWTVSNIT---AGNRKQIQAVIDAG 319
           + +       GA+ +L+  L    + +   I +     + N++   A N    Q + +  
Sbjct: 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379

Query: 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV 379
            +  L+  L+     I   A   + N + A   +  + L   G +  L +L+      I 
Sbjct: 380 CLQTLLQHLKSHSLTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438

Query: 380 TVCLKGLENILKVGEAKK 397
                 L N++    AK 
Sbjct: 439 MGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  165 bits (419), Expect = 2e-46
 Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 23/300 (7%)

Query: 35  DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFL----------LREDYPRLQF 84
               Q+  A      LS +       + + G +    E L                 L+ 
Sbjct: 160 PVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRR 218

Query: 85  EAAWVLTNIASGTSVNTKVLI-DHGAVPIFVKLLASPSDDVREQAVWALGNIVA-HSPGC 142
            A   LTN+  G   N   L    G +   V  L S S+D+++     L N+        
Sbjct: 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 278

Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQL 200
           +  +    ++  L+    E  + S L+     L NL       +     V   L  L   
Sbjct: 279 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 338

Query: 201 IHLD----DEEVLRNVCWTLSNLSD---GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP 253
           +          ++ +    L N+S       D  Q + E      L++ L   S +++  
Sbjct: 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398

Query: 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313
           A  T+ N+   +    + + + GAV  L  L+ ++  K I   S   + N+ A    + +
Sbjct: 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  125 bits (315), Expect = 9e-32
 Identities = 59/398 (14%), Positives = 125/398 (31%), Gaps = 61/398 (15%)

Query: 74  LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL------------ASPS 121
           LL       + + +  L  + S +  +   +   G +P+ ++LL            +  S
Sbjct: 37  LLSMLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGS 95

Query: 122 DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181
            + R +A  AL NI+   P  +     E  ++ LL Q+  +          W      + 
Sbjct: 96  KEARARASAALHNIIHSQPDDK-RGRREIRVLHLLEQIRAYCE------TCWEWQEAHEP 148

Query: 182 KPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE 241
                 + +               E  +      L  LS     +  A+ E G    + E
Sbjct: 149 GMDQDKNPMP-----------APVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAE 196

Query: 242 LL-----------GHPSPSVLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYLLALLINNH 289
           LL            H S ++   A   + N+  GD      +    G +  L+A L  + 
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSE 255

Query: 290 KKSIKKESCWTVSNITAGNRKQIQAVI-DAGLIVPLVNLLQDAEFD-IKKEAAWAISNAT 347
            + +++     + N++       +  + + G +  L+    + + +   K    A+ N +
Sbjct: 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315

Query: 348 KAGTQEQIKYLVREGCIKPLCDLLLCADP----EIVTVCLKGLENILKVGEAKKNRGSTI 403
              T+ +      +G +  L   L          I+      L N+  +    ++    +
Sbjct: 316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 375

Query: 404 GDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
            + N    L++               +  I   A   L
Sbjct: 376 RENNCLQTLLQ----------HLKSHSLTIVSNACGTL 403

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  179 bits (454), Expect = 2e-50
 Identities = 77/470 (16%), Positives = 149/470 (31%), Gaps = 83/470 (17%)

Query: 41  EAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100
                   L S+ +  P     +   +P  +  +L      ++  AA  L ++       
Sbjct: 24  HERGSLASLDSLRKGGPPPPNWRQPELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKV 82

Query: 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNI-VAHSPGCRNLVLHEEALIPLLAQL 159
              +     +P+ V LL  P  +V   A  AL NI        +  + + + +  L+  L
Sbjct: 83  KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142

Query: 160 NEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI------------------ 201
            +   + +  + T TL NL         + V   L AL   +                  
Sbjct: 143 RKARDMDLTEVITGTLWNLS-SHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201

Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH--------------- 245
           H++ E VL N    L N+S   ++  + + E  G+   L+ ++                 
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 246 ----------------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH 289
                            +      A     N  T      + +     V   ++LL  + 
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321

Query: 290 KKSIKKESCWTVSNITAGNRKQI----QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
             +I + S   + N+ AG          A+     +  + +LL +    + K A+ A+ N
Sbjct: 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381

Query: 346 ATKAGTQEQIKYLVREGCIKPLCDLLLCADP--------EIVTVCLKGLENILKVGEAKK 397
                   + K L+ +  I  L   L             + V   L  +  +        
Sbjct: 382 LAV---DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV-------- 430

Query: 398 NRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREK--AVTILETYW 445
                I +  + A+ +   +G +K+  +   GN   +E   A  +L+T W
Sbjct: 431 -----IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 96.9 bits (240), Expect = 1e-21
 Identities = 54/386 (13%), Positives = 108/386 (27%), Gaps = 68/386 (17%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
           +P +V  +      + L A    + +           +     VP  V  L +     L 
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 84  FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP------------------SDDVR 125
                 L N++S    + K+ I   A+      +  P                   + V 
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLS------MLRIGTWTLSNLC 179
                 L N+ +     R  +   + L+  L  + +           ++      L NL 
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 180 KGKPQPPFDQVRP--------------------------VLPALAQLIHL-DDEEVLRNV 212
               +      R                           V+     L+       +L   
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 213 CWTLSNLSDGT----NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 268
              + NL  G          A+ +      + +LL +    V+  A   + N+      +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--R 387

Query: 269 TQCVINHGAVPYLLALLINNHKKSIKKES-------CWTVSNITAGNRKQIQAVIDAGLI 321
            + +I   A+P L+  L    + S    S         T++ + A N +  + + +   I
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447

Query: 322 VPLVNLLQDAEFDIK--KEAAWAISN 345
             LV + +      K  + AA  +  
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 93.9 bits (232), Expect = 9e-21
 Identities = 52/290 (17%), Positives = 99/290 (34%), Gaps = 28/290 (9%)

Query: 165 LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN 224
               R    +L +L KG P PP  + +P LP +  ++    + V  N    L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 225 DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC-VINHGAVPYLLA 283
                V +      LV LL HP   V + A   + NI  G D   +  + N   VP L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 284 LLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLL--------------- 328
           LL       + +    T+ N+++ +  +++ V  A  +  L + +               
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNEDC 198

Query: 329 ---QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA------DPEIV 379
                    +    A  + N +   ++ + K    +G +  L  ++         D ++V
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 380 TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG 429
             C+  L N+      +  +     +         G    +  E L    
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE 308

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 77.3 bits (189), Expect = 2e-15
 Identities = 33/239 (13%), Positives = 67/239 (28%), Gaps = 41/239 (17%)

Query: 16  NLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL 75
           N    L  L   V          Q EAA           +   + + Q  +V  ++  L 
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQ-EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 76  REDYPRLQFEAAWVLTNIASGT----SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWA 131
               P +   +A  + N+ +G           L    A+     LL +  + V + A  A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378

Query: 132 LGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVR 191
           L N+   +      ++ + A+  L+  L                                
Sbjct: 379 LRNLAVDARNKE--LIGKHAIPNLVKNLPG------------------------------ 406

Query: 192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV 250
                         E+ + ++  T++ +     +  + + E      LV +    + S 
Sbjct: 407 ----GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  141 bits (356), Expect = 7e-39
 Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 3/192 (1%)

Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
           G   +  + L + +  +R +A   +G    +    +  VL   AL  LL  L+  A  ++
Sbjct: 82  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 168 LRIGTWTLSNLCKGKPQPPFDQVR-PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK 226
                + +S L + +       +R      L + +    +++     + L NL  G  + 
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 227 IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI 286
              +   G+   LV L+           L  + ++VT      +          L  LL 
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLR 259

Query: 287 NNHKKSIKKESC 298
           +  +   + E  
Sbjct: 260 HRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  117 bits (294), Expect = 5e-30
 Identities = 36/256 (14%), Positives = 87/256 (33%), Gaps = 9/256 (3%)

Query: 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV 250
           +P+ P   +     D++        L++L +  ++       +G+   +   L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310
              A + +G          + V+  GA+  LL LL  +   +++ ++ + +S +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL 370
            +   +       L+  +Q     +K ++A+ + N    G  E    L   G ++ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL-VGHPEHKGTLCSMGMVQQLVAL 217

Query: 371 LLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGN 430
           +           L  L +++                     L+       + + L+ H  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLR-----HRCQLLQQHEE 270

Query: 431 NG-IREKAVTILETYW 445
                E    +L+T +
Sbjct: 271 YQEELEFCEKLLQTCF 286

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 85.8 bits (212), Expect = 7e-19
 Identities = 25/193 (12%), Positives = 64/193 (33%), Gaps = 7/193 (3%)

Query: 20  KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY 79
           +L  +  +V        +     A Q     S   +   ++V+  G + + +  L R+  
Sbjct: 79  QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC 138

Query: 80  PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS 139
             ++ +A + ++ +           +      + ++ +      ++ ++ + L N++   
Sbjct: 139 DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198

Query: 140 PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ------PPFDQVRPV 193
           P  +   L    ++  L  L               L +L    PQ       P   +  +
Sbjct: 199 PEHKG-TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL 257

Query: 194 LPALAQLIHLDDE 206
           L    QL+   +E
Sbjct: 258 LRHRCQLLQQHEE 270

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  143 bits (362), Expect = 3e-37
 Identities = 53/363 (14%), Positives = 118/363 (32%), Gaps = 26/363 (7%)

Query: 37  SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG 96
           S    A+    R+                 +  +++  L       +      +T + +G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 97  -TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPL 155
              V  +V+   G + + + +  +  +  +  A   L    +     + L    E  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALC---EQGVDI 334

Query: 156 LAQLNEHARLSMLRIGTWTLSNLC-----KGKPQPPFDQVRPVLPALAQ---LIHLDDEE 207
           L +L       +       L  L          +P  D     L    +   +    D++
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 208 VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF 267
           + R     L+ L+     K + + +      L++L    + S L   + T  N+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNL 327
           Q         +P ++ L     K+ I +E      +      K+I  + + G+   L  L
Sbjct: 455 QEM-------LPEMIELA-KFAKQHIPEEHEL---DDVDFINKRITVLANEGITTALCAL 503

Query: 328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE 387
            +    + ++  A  ++     G +E    +V+EG +K L  + L    +      + L 
Sbjct: 504 AKTESHNSQELIARVLNAV--CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561

Query: 388 NIL 390
            I 
Sbjct: 562 RIG 564

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  126 bits (316), Expect = 3e-31
 Identities = 43/302 (14%), Positives = 87/302 (28%), Gaps = 5/302 (1%)

Query: 58  IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
           I  +   GI       L + +    Q   A VL  +     +  KV +  G V   +++ 
Sbjct: 488 ITVLANEGITTALCA-LAKTESHNSQELIARVLNAVCGLKELRGKV-VQEGGVKALLRMA 545

Query: 118 ASPSDDVREQAVWALGNIVAHSPGCRNLV--LHEEALIPLLAQLNEHARLSMLRIGTWTL 175
              ++  +  A  AL  I        +       + + PLL  L +             L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 176 SNLCKGKPQPPFDQVR-PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAG 234
           +NL           ++   +  +   +  D   + R     L NL    +          
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

Query: 235 VCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIK 294
               L  L               +  I +      + ++   +   +L  LI N   +++
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725

Query: 295 KESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQ 354
                 + N+     +  + + +  ++  L  L Q  +    K    A      A     
Sbjct: 726 HRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785

Query: 355 IK 356
           I+
Sbjct: 786 IE 787

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  124 bits (311), Expect = 1e-30
 Identities = 60/439 (13%), Positives = 112/439 (25%), Gaps = 92/439 (20%)

Query: 40  LEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99
              A      L+++       +     +   ++ L R       +       N+ +    
Sbjct: 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALMD-LARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 100 --------------------------------NTKVLIDHGAVPIFVKLLASPSDDVREQ 127
                                              VL + G       L  + S + +E 
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514

Query: 128 AVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPP 186
               L  +       R  V+ E  +  LL    E       R  T  L+ +     P+  
Sbjct: 515 IARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVS 572

Query: 187 FDQVRP--VLPALAQLIHLDDEEVLR-NVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL 243
           F   R   V+  L  L+  D   +        L+NL+       Q +I+      +   L
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL 632

Query: 244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303
                 +   A + + N+V  +D       N+  V                         
Sbjct: 633 MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK------------------------ 668

Query: 304 ITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGC 363
                               L  L +D + +     A A++  T    +   K L     
Sbjct: 669 -------------------FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 364 IKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIE 423
           +  L  L+    P +    +  + N++  GE          ++ +     +  E    + 
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGE----------EIAKKLFETDIMELLSGLG 759

Query: 424 DLKSHGNNGIREKAVTILE 442
            L        RE A   L 
Sbjct: 760 QLPDDTRAKAREVATQCLA 778

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  107 bits (268), Expect = 4e-25
 Identities = 34/230 (14%), Positives = 66/230 (28%), Gaps = 4/230 (1%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLL-SIERSLPIDEVIQAGIVPRFVEFLLREDYPRL 82
           + A++          +  A     R+  +I   +         ++   +  L ++     
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 83  QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
            FE+   LTN+AS      + +I    V      L      +   A   L N+V      
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDV 656

Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP--VLPALAQL 200
             +       +  LA L E             L+ +     +     +     L  L  L
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV 250
           I      V       + N+ +   +  + + E  +   L  L   P  + 
Sbjct: 717 IANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 93.4 bits (231), Expect = 2e-20
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 4/227 (1%)

Query: 3   SQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQ-LEAATQFRRLLSIERSLPIDEV 61
           +++ +   P  S + Q  L+++  ++  +  D  +++  E+      L S+  S+    +
Sbjct: 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV-RQRI 619

Query: 62  IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS 121
           I+   V +     L ED+  L   AA  L N+     V      ++  V     L     
Sbjct: 620 IKEQGVSKIEY-YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED 678

Query: 122 DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181
           ++       AL  I + S  C   +L   + + +L  L  +   ++   G   + N+   
Sbjct: 679 EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738

Query: 182 KPQPPFDQVRP-VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI 227
             +         ++  L+ L  L D+   +        L+     +I
Sbjct: 739 GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 69.9 bits (170), Expect = 7e-13
 Identities = 43/329 (13%), Positives = 91/329 (27%), Gaps = 34/329 (10%)

Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
           +      A   L  I  +           + +   +        +      T  ++ L  
Sbjct: 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLN 276

Query: 181 GKPQPPFDQVRP--VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGP 238
           G        V    +L  +  +   DDE   R  C  L   S    DK +A+ E GV   
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAAS-SKKDKAKALCEQGV-DI 334

Query: 239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYLLALLIN-----NHKKS 292
           L  L    +  + + AL  +  + +             GA   L              K 
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQ 352
           I++ +   ++ +T     + + + D   I  L++L +               N   A   
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNA--- 451

Query: 353 EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARL 412
                                 + + +   +  L    K    +++    +  +N+   +
Sbjct: 452 ---------------------YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490

Query: 413 VEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
           +        +  L    ++  +E    +L
Sbjct: 491 LANEGITTALCALAKTESHNSQELIARVL 519

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  122 bits (307), Expect = 2e-32
 Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 20/214 (9%)

Query: 67  VPRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
           + R V  L  +   P     AA  + +     S   K +     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
                AL N+V      +  V     +  LL  L +   L   +  T  L NL       
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 186 PFDQVRPVLPALAQLI----------------HLDDEEVLRNVCWTLSNLSDGTNDKIQA 229
               +   L  L + I                 L D ++  NV   L N+S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 230 VIEA-GVCGPLVELLGHPSPSVLIPALRTVGNIV 262
           +    G+   LV  +            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 85.4 bits (211), Expect = 3e-19
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 20/207 (9%)

Query: 189 QVRPVLPALAQLIHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246
            +   L     ++  D      +      + +     ++  + V +      L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306
           +  V       + N+V  D+     V     VP LL +L        KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 307 GNRKQIQAVIDAGLIVPLVNLL----------------QDAEFDIKKEAAWAISNATKAG 350
            ++ +   + +A  ++ L   +                   +FDI       + N + AG
Sbjct: 125 NDKLKNLMITEA--LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

Query: 351 TQEQIKYLVREGCIKPLCDLLLCADPE 377
              +      +G I  L   +     +
Sbjct: 183 ADGRKAMRRCDGLIDSLVHYVRGTIAD 209

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 84.8 bits (209), Expect = 7e-19
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 22  EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR 81
            +L  ++  +  D  ++   A +    +      L         ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP------MLKKLFSLLKKSEAIP 85

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           L  E A     +A       K +I     P+         +  +    +AL  I   +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI 201
               ++     + +L+  N   +L+ L      +  + +         V P LP +  L+
Sbjct: 141 LMASIV--RDFMSMLSSKNREDKLTAL----NFIEAMGENSF----KYVNPFLPRIINLL 190

Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
           H  DE V  +    L +L+   +   + VI+       +E L   S  V       +  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRL 244

Query: 262 V 262
           +
Sbjct: 245 L 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 64.3 bits (156), Expect = 7e-12
 Identities = 25/201 (12%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 66  IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
           ++ + +E LL +D   +   A  ++  IA       + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIE-LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
           ++   A G +    P     ++    L       +E  ++++     + L  + K  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVKSMI--PVLFANYRIGDEKTKINVS----YALEEIAKANP-- 139

Query: 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH 245
               +  ++     ++   + E        +  + + +   +   +       ++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPR-----IINLLHD 192

Query: 246 PSPSVLIPALRTVGNIVTGDD 266
               V   A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 62/237 (26%)

Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSML 168
            +   ++LL      V + A+  +  I           L+E  L  L + L +   + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLT 87

Query: 169 RIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ 228
           +        + K KP    + V+ ++P L     + DE+   NV + L  ++      + 
Sbjct: 88  QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN 288
           +++        + +L   +                                         
Sbjct: 144 SIVRD-----FMSMLSSKNRED-------------------------------------- 160

Query: 289 HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
                K  +   +  +   + K +   +       ++NLL D +  ++  A  A+ +
Sbjct: 161 -----KLTALNFIEAMGENSFKYVNPFLPR-----IINLLHDGDEIVRASAVEALVH 207

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 5e-14
 Identities = 73/439 (16%), Positives = 132/439 (30%), Gaps = 117/439 (26%)

Query: 34  DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI 93
           D   M  +A +   RL     S       Q  +V +FVE +LR +Y        ++++ I
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSK------QEEMVQKFVEEVLRINYK-------FLMSPI 98

Query: 94  AS---GTSVNTKVLID-----HGAVPIFVKLLASPSDDV-REQAVWALGNIVAH-SPGCR 143
            +     S+ T++ I+     +    +F K       +V R Q    L   +    P  +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPA-K 151

Query: 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL 203
           N+++                   +L  G+        GK           +         
Sbjct: 152 NVLID-----------------GVL--GS--------GK---------TWVALDV----C 171

Query: 204 DDEEVLR----NVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259
              +V       + W    L+    +  + V+E      L +LL    P+    +  +  
Sbjct: 172 LSYKVQCKMDFKIFW----LNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSN 222

Query: 260 NIVTGDDFQTQCVINHGAVPYLLALLI--N-NHKKSIKK--ESCWTVSNITAGNRKQIQA 314
             +     Q +      + PY   LL+  N  + K+      SC  +  +T   ++    
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDF 280

Query: 315 VIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGC-IKPLCDLLLC 373
           +  A      ++           E    +        Q+    L RE     P   L + 
Sbjct: 281 LSAATTTHISLDHHSMT-LT-PDEVKSLLLKYLDCRPQD----LPREVLTTNPRR-LSII 333

Query: 374 ADPEIVTVCLKGLENILKVGEAKKNRGSTIG-DVNQYARLVEGAEGFKKIEDLKSHGNNG 432
           A  E +   L   +N   V   K      I   +N     +E AE  K  + L       
Sbjct: 334 A--ESIRDGLATWDNWKHVNCDKLTT--IIESSLNV----LEPAEYRKMFDRL------S 379

Query: 433 IREKAVTI----LETYWLK 447
           +   +  I    L   W  
Sbjct: 380 VFPPSAHIPTILLSLIWFD 398

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 39/312 (12%), Positives = 85/312 (27%), Gaps = 68/312 (21%)

Query: 49  LLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG 108
           L +  + L  DE+ +           L +     +  +A VL                  
Sbjct: 16  LYNQCKKLNDDELFRL----------LDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSML 168
           AV + ++  +  +   R+   + LG I             +     L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSACVR 108

Query: 169 RIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ 228
                + +  CK  P         ++             V R   + +S ++D      +
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------K 158

Query: 229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN 288
           A I       L+ LL  P+  V   A   +      +                + +L  +
Sbjct: 159 ATIP-----LLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEML-QD 203

Query: 289 HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK 348
             + ++ E+   +S              D  ++  L + L+     +  +   A     +
Sbjct: 204 KNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAG---E 247

Query: 349 AGTQEQIKYLVR 360
            G +  +  L  
Sbjct: 248 LGDKTLLPVLDT 259

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 71/438 (16%), Positives = 132/438 (30%), Gaps = 52/438 (11%)

Query: 12  APSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFV 71
           +   +          +V  +   D      +A     L S+     +   ++A +   F 
Sbjct: 115 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSAC---GLFSVCYPR-VSSAVKAELRQYFR 170

Query: 72  EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWA 131
             L  +D P ++  AA  L   A    ++    +    +P+F  L +   D VR  AV A
Sbjct: 171 N-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEA 226

Query: 132 LGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVR 191
             NI    P      L    L       +   R  +        + L K     P     
Sbjct: 227 CVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD----KFTELQKA--VGPEITKT 280

Query: 192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELLGHPSPSV 250
            ++PA   L+   + EV       +    +  + D  + VI + +   + EL+   +  V
Sbjct: 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHV 340

Query: 251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310
                  +  +           I H  +P  LA L         K+ C  V      N  
Sbjct: 341 KSALASVIMGLSPI--LGKDNTIEH-LLPLFLAQL---------KDECPEVRLNIISNLD 388

Query: 311 QIQAVIDAG-----LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK 365
            +  VI        L+  +V L +DA++ ++      +         E     +   C+ 
Sbjct: 389 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA 448

Query: 366 PLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL 425
            L D        I       L+ +++            G    +A ++       K+  +
Sbjct: 449 WLVD----HVYAIREAATSNLKKLVEK----------FGKEWAHATIIP------KVLAM 488

Query: 426 KSHGNNGIREKAVTILET 443
               N   R   +  +  
Sbjct: 489 SGDPNYLHRMTTLFCINV 506

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 23/236 (9%)

Query: 18  QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE 77
            T   +LP  +A +  +   ++L   +    +  +   + I ++ Q+ ++P  VE L  +
Sbjct: 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV---IGIRQLSQS-LLPAIVE-LAED 413

Query: 78  DYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137
              R++      +  +A    V      D     + +  L      +RE A   L  +V 
Sbjct: 414 AKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470

Query: 138 HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT-WTLSNLCKGKPQPPFDQVRPVLPA 196
                         +IP +  ++      + R+ T + ++ L +   Q    +   +LP 
Sbjct: 471 KFGKEW----AHATIIPKVLAMSGDPN-YLHRMTTLFCINVLSEVCGQDITTKH--MLPT 523

Query: 197 LAQLIHLDDEEVLRNVCWTLSNLSD--GTNDKIQAVIEAGVCGPLVELLGHPSPSV 250
           + ++       V  NV  +L  +      +     V        L +L       V
Sbjct: 524 VLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI-----LEKLTQDQDVDV 574

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 45/386 (11%), Positives = 133/386 (34%), Gaps = 27/386 (6%)

Query: 12  APSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLS----IERSLPIDEVIQAGIV 67
              +       I+  +   + SD   ++  ++   + ++           +   +   I 
Sbjct: 76  VSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKIT 135

Query: 68  PRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH--GAVPIFVKLLASPSDDVR 125
            R    + +++   +Q EA  ++ ++ S       +L++     +   +  L SP   VR
Sbjct: 136 GRLTSAIAKQEDVSVQLEALDIMADMLS---RQGGLLVNFHPSILTCLLPQLTSPRLAVR 192

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
           ++ + ALG++V         ++  + +  LL++L+++  +S  R     ++ + +     
Sbjct: 193 KRTIIALGHLVMSCGN----IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 248

Query: 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH 245
             + +  ++P + +  ++DD+E+         +       ++   +   +   L  L   
Sbjct: 249 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 308

Query: 246 PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS--IKKESCWTVSN 303
           P+            +    D+                    ++   S  +++ +   +  
Sbjct: 309 PN---------YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 359

Query: 304 ITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGC 363
           +    R ++       +   L++  ++ E ++K +   A  +  K     Q      +  
Sbjct: 360 V-VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM 418

Query: 364 IKP--LCDLLLCADPEIVTVCLKGLE 387
            +      +L    P IV    K ++
Sbjct: 419 EQGETPLTMLQSQVPNIVKALHKQMK 444

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.9 bits (120), Expect = 7e-07
 Identities = 30/258 (11%), Positives = 78/258 (30%), Gaps = 21/258 (8%)

Query: 6   FLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAG 65
           F  +      N    +++L  +   V+S   ++  + +           +    +   A 
Sbjct: 758 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAV 817

Query: 66  IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
           +     +         ++  A   L  +     ++ ++ +      + ++  +SPS++V+
Sbjct: 818 VGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVK 873

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
             A +ALG+I        NL  +   ++  +    +   L +  +       +       
Sbjct: 874 SAASYALGSISVG-----NLPEYLPFVLQEITSQPKRQYLLLHSLKEI----ISSASVVG 924

Query: 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH 245
               V  +   L +     +E     V   L  L+         +    +   L   L  
Sbjct: 925 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT--------LIDPETLLPRLKGYLIS 976

Query: 246 PSPSVLIPALRTVGNIVT 263
            S       +  V   ++
Sbjct: 977 GSSYARSSVVTAVKFTIS 994

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 45/241 (18%), Positives = 77/241 (31%), Gaps = 56/241 (23%)

Query: 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH 162
           +  D   V +++K L   S  VR  A +ALG I     G    V   E LI  L   +  
Sbjct: 14  LRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI-----GDERAV---EPLIKALKDEDAW 65

Query: 163 ARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG 222
            R    R     L  +               +  L + +  +D  V ++    L  + D 
Sbjct: 66  VR----RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD- 110

Query: 223 TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLL 282
                +  +E     PL++ L      V I A   +G I  GD+          AV  L+
Sbjct: 111 -----ERAVE-----PLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLI 149

Query: 283 ALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWA 342
             L  +    +++ +   +  I               +   +  L +      +K A   
Sbjct: 150 KAL-KDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNY 197

Query: 343 I 343
           +
Sbjct: 198 L 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 43/219 (19%), Positives = 68/219 (31%), Gaps = 56/219 (25%)

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           V  +++  L++D   ++  AA+ L  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIK-NLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
            A  ALG I     G    V   E LI  L   +   R S        L  +  G  +  
Sbjct: 69  AAADALGQI-----GDERAV---EPLIKALKDEDGWVRQSAA----VALGQI--GDER-- 112

Query: 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246
                  +  L + +  +D  V     + L  + D      +  +E      L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 155

Query: 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL 285
              V   A   +G I  G +              +  L 
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA 183

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 12/69 (17%)

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           V   ++  L+++   ++  AA  L  I                     KL  + +   R+
Sbjct: 145 VEPLIK-ALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARK 192

Query: 127 QAVWALGNI 135
            AV  L   
Sbjct: 193 VAVNYLETH 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 56/235 (23%)

Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSML 168
            V +++K L   S  VR  A +ALG I     G    V   E LI  L   +   R    
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKI-----GDERAV---EPLIKALKDEDAWVR---- 62

Query: 169 RIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ 228
           R     L  +               +  L + +  +D  V ++    L  + D      +
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106

Query: 229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN 288
             +E     PL++ L      V I A   +G I  GD+          AV  L+  L  +
Sbjct: 107 RAVE-----PLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL-KD 149

Query: 289 HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI 343
               +++ +   +  I        + V  A     +  L +      +K A   +
Sbjct: 150 EDGWVRQSAADALGEI------GGERVRAA-----MEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 56/219 (25%)

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
           V  +++  L++D   ++  AA+ L  I            D  AV   +K L      VR 
Sbjct: 16  VEMYIK-NLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
            A  ALG I             +E  +  L +  +     + +     L  +  G  +  
Sbjct: 64  AAADALGQI------------GDERAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246
                  +  L + +  +D  V     + L  + D      +  +E      L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL 285
              V   A   +G I  G +              +  L 
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA 178

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 37/229 (16%), Positives = 63/229 (27%), Gaps = 73/229 (31%)

Query: 22  EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR 81
           E +   +  +  D   ++  AA    ++                 V   ++  L+++   
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIK-ALKDEDAW 60

Query: 82  LQFEAAWVLTNIASGTSVNTKVLI----------------------DHGAVPIFVKLLAS 119
           ++  AA  L  I    +V  + LI                      D  AV   +K L  
Sbjct: 61  VRRAAADALGQIGDERAV--EPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKD 118

Query: 120 PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-------EHARLSMLRIGT 172
               VR  A +ALG I             E A+ PL+  L        + A  ++  IG 
Sbjct: 119 EDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG 167

Query: 173 WTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSD 221
                               V  A+ +L         +     L     
Sbjct: 168 ------------------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 65/407 (15%), Positives = 126/407 (30%), Gaps = 35/407 (8%)

Query: 7   LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGI 66
            PS       +     +       V+ + +    +      RLLS   S  IDE ++  I
Sbjct: 240 YPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELL---RLLS---SACIDETMRTYI 293

Query: 67  VPRFVEFLLRE-DYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
              +++ L R  +   +Q  +A VL    S T +    L       IF+  ++       
Sbjct: 294 TENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVPKV 351

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
           E +V AL  +   +     +  +E     LL  +        L      ++NL     + 
Sbjct: 352 EMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411

Query: 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH 245
                                + +       +   D      + ++   +   L   + +
Sbjct: 412 XXXXXXXXXXXXXXXXXXPAADKVGAEK---AAKEDILLFNEKYILRTELISFLKREMHN 468

Query: 246 PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN--HKKSIKKESCWTVSN 303
            SP+     +R + NI    +F  Q     GAV  +L  L N     + I+   C  ++ 
Sbjct: 469 LSPNCKQQVVRIIYNITRSKNFIPQLA-QQGAVKIILEYLANKQDIGEPIRILGCRALTR 527

Query: 304 --ITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK--------------EAAWAISN-- 345
             I        +       I  L  LL  +                    EA  A++N  
Sbjct: 528 MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLA 587

Query: 346 --ATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL 390
              T  G +     +  +     + +L+L  +  +    L+ + N++
Sbjct: 588 SSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 11/177 (6%)

Query: 35  DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRF---VEFLLREDYPRLQFEAAWVLT 91
             +   EA      L S E S   +          +   +E L+ ++   LQ     +++
Sbjct: 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELIS 631

Query: 92  NIASGTSVNTKVLIDHG------AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL 145
           N+ S          +           I VKLL     + +        NI    P     
Sbjct: 632 NMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691

Query: 146 VLHEEALIPLLAQL--NEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQL 200
           +L ++ LI    Q+  ++   + + +        L +  P    ++V P+L    +L
Sbjct: 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKL 748

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 10/233 (4%)

Query: 33  SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTN 92
           S+D   +  +    +  +           +   I    +   + +  P ++     ++T 
Sbjct: 59  SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLN-NIGDSSPLIRATVGILITT 116

Query: 93  IASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN---LVLHE 149
           IAS   +          +P    LL S   +  E A  AL  I   S    +   L    
Sbjct: 117 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172

Query: 150 EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVL 209
             +IP   Q  +H+   +       ++     + Q     +   +  L  L   ++ EV 
Sbjct: 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVR 232

Query: 210 RNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262
           +NVC  L  L +   D++   +   +   +++       +V + A      + 
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLA 284

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 54/372 (14%), Positives = 115/372 (30%), Gaps = 59/372 (15%)

Query: 66  IVPRFVEFL---LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSD 122
           I+   +EF+   +  D  R +  A     +I  G     +    H A+P  + L+   S 
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425

Query: 123 DVREQAVWALGNIVAHSPGCRNLVLHEEALIP-LLAQLNEHARL--SMLRIGTWTLSNLC 179
            V+E   W +G I        +   H   ++   L  L +H ++  +        +  L 
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLA 485

Query: 180 KGKPQPPFDQVRPVLPALAQ-LIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA--GVC 236
           +  P P ++    ++  L      +D+E   R   +            +  ++E      
Sbjct: 486 EATPSPIYNFYPALVDGLIGAANRIDNEFNARASAF----------SALTTMVEYATDTV 535

Query: 237 GPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYL--------------- 281
                 +       L   +    N +T +D Q+   +    +  L               
Sbjct: 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA 595

Query: 282 -------LALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD 334
                    LL       I+ +  + +S + A   K  +  ++      L+  L   +  
Sbjct: 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSP 654

Query: 335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE 394
           +   A   I++ + +  ++  +Y                    ++ V  + + N     E
Sbjct: 655 VSITAVGFIADISNSLEEDFRRYS-----------------DAMMNVLAQMISNPNARRE 697

Query: 395 AKKNRGSTIGDV 406
            K    S  GD+
Sbjct: 698 LKPAVLSVFGDI 709

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 45/349 (12%), Positives = 100/349 (28%), Gaps = 34/349 (9%)

Query: 42  AATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101
                  L+ + ++   D  I    +      +  ++   ++  +     ++  G+    
Sbjct: 58  GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL--GSQFTE 115

Query: 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG-CRNLVLHEEALIPLLAQLN 160
             +     V + + LL      VR   V  L +++       + ++L     +  L  L 
Sbjct: 116 IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175

Query: 161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP-VLPALAQLIH----LDDEEVLRNVCWT 215
             +R  +   G   L  L +                 L  +I      D   V+ +    
Sbjct: 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLIL 235

Query: 216 LSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP---------SVLIPALRTVGNIVTGDD 266
           L NL    N       E      +                  + L   L+ V  +V+ ++
Sbjct: 236 LQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295

Query: 267 FQT------QCVINHGAVPYLLALLINNHK-KSIKKESCWTVSNITAGNRKQIQ--AVID 317
                    + +   G +  L  +L+       I  E+  TVS +  G +      A ++
Sbjct: 296 PPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355

Query: 318 AGLIVPLVNLLQ--------DAEFDIKKEAAWAISNATKAGTQEQIKYL 358
           A    P   ++            F ++    +          + Q + +
Sbjct: 356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 36/143 (25%)

Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSML 168
            +      +A  +  VR     AL  +             +EA  PLL  L+       +
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRM------------GDEAFEPLLESLSNED--WRI 58

Query: 169 RIG-TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI 227
           R    W + N           Q    +  L +L+  D   V      +L  +        
Sbjct: 59  RGAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ 102

Query: 228 QAVIEAGVCGPLVELLGHPSPSV 250
           + V  A     + +L    +   
Sbjct: 103 ERVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 74  LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALG 133
            L  +  R++  AAW++ N             D  AV   +KLL   S  VR  A  +L 
Sbjct: 50  SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLE 98

Query: 134 NI 135
            I
Sbjct: 99  QI 100

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 34/143 (23%)

Query: 74  LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALG 133
            + ++   ++ + +  L+ +               A    ++ L++    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 134 NIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPV 193
           N           V   E LI LL   +   R         +L  +  G  +        V
Sbjct: 68  NF-----QDERAV---EPLIKLLEDDSGFVRSGAA----RSLEQI--GGER--------V 105

Query: 194 LPALAQLIHLDDEEVLRNVCWTL 216
             A+ +L         +     L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 11/60 (18%)

Query: 74  LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALG 133
           LL +D   ++  AA  L  I                     KL  + +   R+ AV  L 
Sbjct: 81  LLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 129

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 21/167 (12%)

Query: 67  VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
               +  +L  D   L++  A+ +    +GT  N+ V        +    ++  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV------KRLLHVAVSDSNDDVRR 596

Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
            AV ALG ++               +  ++  L++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA 233
                  +  L  L     + V +     LS +     +K+   +  
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 16/239 (6%)

Query: 17  LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR 76
                  L  ++     DD + +L A      +L    S     V++   +  F+   L 
Sbjct: 28  ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALS 85

Query: 77  EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALG--N 134
           ++  ++  +A   L  +     + +K  +   A    V LL SP D +R + +  L    
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 135 IVAHSPGCRNLVLHEEALIPLLAQ------LNEHARLSMLRIGTWTLSNLCKGKPQPPFD 188
            +  S   R  +        L  +             S        + +      Q   +
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNE 203

Query: 189 QVR-PVLPALAQLIHLDDEEVLRNVCWTLSNLSDG---TNDKIQAVIEAGVCGPLVELL 243
            +    L  L + +     E ++     +S + DG           ++A     L++ +
Sbjct: 204 FIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 64/408 (15%), Positives = 132/408 (32%), Gaps = 61/408 (14%)

Query: 34  DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI 93
           DD+    +AA     LL+   +   D+++    V  F++  ++    R +  A      I
Sbjct: 339 DDDWNPCKAAGVCLMLLA---TCCEDDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCI 393

Query: 94  ASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALI 153
             G   +    +   A+P  ++L+  PS  VR+ A W +G I    P      ++   L+
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453

Query: 154 P-LLAQLNEHAR--------LSMLRIGTWTLSNLCKGKPQPPFDQVRP----VLPALAQL 200
             L+  L+   R         S L    +  +++   + +P    +      ++  L + 
Sbjct: 454 QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET 513

Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVC--GPLVELLGHPSP---------- 248
               D            +L +   +  +    A       ++E L               
Sbjct: 514 TDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSD 573

Query: 249 --------SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS-IKKESCW 299
                   S+L   L+ V   V   D           +  LL +  +      +++++  
Sbjct: 574 RIQFNDLQSLLCATLQNVLRKVQHQDALQIS---DVVMASLLRMFQSTAGSGGVQEDALM 630

Query: 300 TVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYL 358
            VS +      +    ++A     L   L++ AE+ +   A   + +  +A     I + 
Sbjct: 631 AVSTLVEVLGGEFLKYMEA-FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC 689

Query: 359 VREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDV 406
                             E++ + L+ L N       K    S  GD+
Sbjct: 690 -----------------DEVMQLLLENLGNENVHRSVKPQILSVFGDI 720

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	449
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.82
3grl_A	651	General vesicular transport factor P115; vesicle t	99.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
3grl_A	651	General vesicular transport factor P115; vesicle t	99.79
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.75
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.73
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.72
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.71
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.67
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.64
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.63
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.62
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.6
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.6
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.54
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.51
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.49
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.46
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.32
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.25
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.17
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.15
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.09
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.07
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.03
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.98
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.95
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.94
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.89
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.88
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.88
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.79
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.72
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.67
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.61
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.58
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.51
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.43
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.42
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.39
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.35
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.29
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.28
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.25
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.21
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.15
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.09
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.06
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.91
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.75
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.68
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.61
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.6
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.58
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.55
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.54
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.49
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.47
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.44
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.42
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.35
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.05
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.95
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.89
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.87
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.85
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.85
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.78
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.64
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.27
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.12
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.11
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.79
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.71
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.64
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.64
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.4
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.32
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.27
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.11
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.57
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.4
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	94.23
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	94.21
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	94.09
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.61
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	93.27
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.7
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	92.55
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.11
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	91.81
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	90.0
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.88
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.49
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	89.08
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	88.6
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	88.29
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	88.2
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	88.09
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	86.04
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	85.23
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	85.23
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	85.06
2jak_A	392	Serine/threonine-protein phosphatase 2A 56 kDa RE	82.31
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	82.27
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	82.24
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	81.89
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	81.02

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.7e-56  Score=429.39  Aligned_cols=418  Identities=46%  Similarity=0.767  Sum_probs=390.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      .++.+++.++|+|++.|+.|+..++++++.+..++++.+++.|++|.|+++|++.+.+++|..|+|+|+|++.++++.+.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            48999999999999999999999999999887889999999999999999998776689999999999999999999999


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc----cHHHHHHHHHHHHHh
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA----RLSMLRIGTWTLSNL  178 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~l~~l  178 (449)
                      .+++.|++|.|+.+|.+++.++++.|+|+|+|++.+++..+..+.+.|++++++.++....    ...+++.++|++.++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995322    345788999999999


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          179 CKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       179 ~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      +.+. +........+++|.|+.++.+++++++..++++|.+++...++..+.+.+.|+++.|+.++.+++..++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9987 555666678999999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK  337 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  337 (449)
                      ++|++.+++.....+++.|+++.|+.++.++ +..+++.|+|+|+|++.+++..+..+.+.|+++.|+.++.+++.+++.
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcc
Q 039940          338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAE  417 (449)
Q Consensus       338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (449)
                      .|+|+|+|++..++.+++.++++.|+++.|++++++.|++++..++++|.++++..++..       ..+.+...|+++|
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g  449 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG  449 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcC
Confidence            999999999999899999999999999999999999999999999999999999887643       4667899999999


Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          418 GFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       418 ~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      |+++|+.|+.|+|++|+++|..+|++||+.|
T Consensus       450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          450 GLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            9999999999999999999999999999864

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3e-55  Score=423.38  Aligned_cols=419  Identities=46%  Similarity=0.758  Sum_probs=390.8

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ..++.+++.+.|+|++.++.|+..++++++.+..++.+.+++.|++|.|+++|...+.++++..|+|+|+|++.++++.+
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            46899999999999999999999999999888788899999999999999999877668999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc----cHHHHHHHHHHHHH
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA----RLSMLRIGTWTLSN  177 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~l~~  177 (449)
                      ..+++.|++|.|+.++.+++..+++.|+|+|+|++.+++..+..+.+.|++++++.++....    ...+++.++|++.+
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995322    34578899999999


Q ss_pred             hhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 039940          178 LCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALR  256 (449)
Q Consensus       178 l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~  256 (449)
                      ++.+. +........+++|.|+.++.+++++++..++|+|.+++.+.++..+.+.+.|+++.|+.++.++++.++..++.
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            99987 55566677899999999999999999999999999999999888888999999999999999999999999999


Q ss_pred             HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940          257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK  336 (449)
Q Consensus       257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~  336 (449)
                      +|+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940          337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA  416 (449)
Q Consensus       337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ..|+|+|+|++.+++.++..++++.|+++.|+++|++.|++++..++++|.++++..+...       ..+.+...|+++
T Consensus       395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~  467 (529)
T 3tpo_A          395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC  467 (529)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHC
Confidence            9999999999998899999999999999999999999999999999999999999887643       356789999999


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          417 EGFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      ||+++|+.|+.|+|++|+++|.+||++||+.|
T Consensus       468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          468 GGLDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             TCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999854

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.7e-49  Score=384.90  Aligned_cols=427  Identities=75%  Similarity=1.183  Sum_probs=393.2

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      ....+|.+++.|.++++.++..|++.|+++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++
T Consensus        72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            45679999999999999999999999999988765578899999999999999999886589999999999999998899


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      .+..+++.|+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.++.++..+.++.++..++|+|.+++
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988889999999999999999977788999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      ...+........++++.|+.++.+++++++..++++|.+++...+...+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~  311 (528)
T 4b8j_A          232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG  311 (528)
T ss_dssp             CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence            99877777778999999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA  339 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a  339 (449)
                      +++.+++...+.+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++.+..+++.|+++.|+.++.++++.++..|
T Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  391 (528)
T 4b8j_A          312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA  391 (528)
T ss_dssp             HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99999888888899999999999999876578899999999999999888888899999999999999999999999999


Q ss_pred             HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940          340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF  419 (449)
Q Consensus       340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (449)
                      +++|++++..++++...++.+.|+++.|+.++.+.+++++..++++|.+++...+.......  ...+.+...+.+.|++
T Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~  469 (528)
T 4b8j_A          392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGL  469 (528)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcH
Confidence            99999999987889999999999999999999999999999999999999998876432110  1355789999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          420 KKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       420 ~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      +.|..++.|++++++++|..++++||+.|
T Consensus       470 ~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          470 EKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.9e-47  Score=370.35  Aligned_cols=425  Identities=53%  Similarity=0.816  Sum_probs=388.4

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      ..+.++.+++.|+++++.++..|+..|.++++....+....++..|++|.|+++|.++++++++..|+++|++++.++++
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            34679999999999999999999999999987654567788899999999999999983389999999999999998888


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      .+..+++.|+++.|+.+|.++++.+++.|+|+|++++...+..+..+...|+++.++.++ .+.++.++..++|+|.+++
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~  243 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLC  243 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999888888888999999999999 5588999999999999999


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          180 KGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       180 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ... +........++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..|+++|
T Consensus       244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L  323 (530)
T 1wa5_B          244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  323 (530)
T ss_dssp             CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence            887 6667777799999999999999999999999999999998887778888899999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE  338 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  338 (449)
                      ++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++.+..+++.|+++.|+.++.+++++++..
T Consensus       324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  402 (530)
T 1wa5_B          324 GNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE  402 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence            999998888888888999999999999999 9999999999999999988888888899999999999999999999999


Q ss_pred             HHHHHHHhhccCCH--HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940          339 AAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA  416 (449)
Q Consensus       339 a~~aL~~l~~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      |+++|++++..+++  +..+.+.+.|+++.|+.++.+.+++++..++++|.+++...+.......  +..+.+...+.+.
T Consensus       403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~  480 (530)
T 1wa5_B          403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKA  480 (530)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccHHHHHHHHc
Confidence            99999999997666  7888999999999999999999999999999999999998876421000  1245789999999


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          417 EGFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      ||++.|..|+.|++++++++|..++++||..|
T Consensus       481 g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          481 GGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             THHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            99999999999999999999999999999865

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.7e-46  Score=357.31  Aligned_cols=423  Identities=56%  Similarity=0.889  Sum_probs=383.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      .++.+++.++++++.++..|+..|+++++....+....++.. |+++.|+++++++++++++..|+++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            589999999999999999999999998764435666778887 9999999999998338999999999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      ..+.+.|+++.|+.++.++++.+++.|+++|++++...+..+..+.+.|+++.++.++..+.+..++..++|++.+++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88889999999999999999999999999999999998888888889999999999995567899999999999999987


Q ss_pred             C-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 039940          182 K-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN  260 (449)
Q Consensus       182 ~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~  260 (449)
                      . +........+++|.++.++.++++.++..++++|.+++...++....+.+.|+++.++.++.++++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 555556668999999999999999999999999999999887777778888999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHH
Q 039940          261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAA  340 (449)
Q Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~  340 (449)
                      ++.+.+...+.+.+.|+++.|+.++.++ ++.++..|+++|+|++.++++....+++.|+++.|+.++.+++++++..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888888888999999999999998 999999999999999998888888888999999999999999999999999


Q ss_pred             HHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHH
Q 039940          341 WAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK  420 (449)
Q Consensus       341 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (449)
                      ++|++++..++++..+.+++.|+++.|+.++++++++++..++++|.+++...+.....+.  ...++|...+.+.||++
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~  417 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLD  417 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHH
Confidence            9999999877788889899999999999999999999999999999999998775422100  12457899999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          421 KIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       421 ~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      .|..+++++++++++.|..++++||+.|
T Consensus       418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          418 KIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999999999999999999999999876

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.4e-42  Score=332.97  Aligned_cols=381  Identities=27%  Similarity=0.408  Sum_probs=336.7

Q ss_pred             CCCCchhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 039940           11 PAPSLNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWV   89 (449)
Q Consensus        11 ~~~~~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~   89 (449)
                      .-|+.+...+.|++|.|+++|++ +++.+|..|+++|.++++++ .+....+++.|++|.|+.+|.+++ .++++.|+++
T Consensus        89 ~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~a  166 (510)
T 3ul1_B           89 KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWA  166 (510)
T ss_dssp             SCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred             CCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHH
Confidence            44566778889999999999975 56899999999999999876 677888999999999999999999 8999999999


Q ss_pred             HHHhcCCChhhhHHHHhCCChHHHHHhhCCCC-----hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccccc
Q 039940           90 LTNIASGTSVNTKVLIDHGAVPIFVKLLASPS-----DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHAR  164 (449)
Q Consensus        90 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~  164 (449)
                      |+|++.++++.+..+.+.|+++.|+.++.+++     ..+...++|++++++.............++++.++.++ .+.+
T Consensus       167 L~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~  245 (510)
T 3ul1_B          167 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHND  245 (510)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSC
T ss_pred             HHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCC
Confidence            99999988999999999999999999998754     45778899999999987755555555678899999988 7889


Q ss_pred             HHHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940          165 LSMLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL  243 (449)
Q Consensus       165 ~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll  243 (449)
                      ++++..++|+|.+++...... ......++++.|+.++.+++..++..++++++|++..++.....+.+.|+++.|+.++
T Consensus       246 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL  325 (510)
T 3ul1_B          246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL  325 (510)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT
T ss_pred             HHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh
Confidence            999999999999999876332 2334478999999999999999999999999999999998888899999999999999


Q ss_pred             CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChH
Q 039940          244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIV  322 (449)
Q Consensus       244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~  322 (449)
                      .++++.++..|+|+|+|++.++......+.+.|+++.|+.++.++ +..++++|+|+|+|++. ++++.+..+++.|+++
T Consensus       326 ~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~  404 (510)
T 3ul1_B          326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE  404 (510)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHH
Confidence            999999999999999999999999999999999999999999999 99999999999999997 6788888999999999


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhccC----CHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          323 PLVNLLQDAEFDIKKEAAWAISNATKAG----TQE-QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       323 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .|+++|...+++++..++++|.|+...+    ..+ ....+.+.|+++.|..+..+++.++++.|..+|.++|...+.
T Consensus       405 ~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  482 (510)
T 3ul1_B          405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  482 (510)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999999998632    233 344556789999999999999999999999999999975543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.3e-42  Score=332.36  Aligned_cols=382  Identities=26%  Similarity=0.409  Sum_probs=337.0

Q ss_pred             CCCCCchhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 039940           10 APAPSLNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW   88 (449)
Q Consensus        10 ~~~~~~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~   88 (449)
                      ...|+.+...+.|++|.|+++|.+ +++.++..|+++|.++++++ ......+++.|++|.|+.++.+++ .+++..|++
T Consensus       107 ~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~  184 (529)
T 3tpo_A          107 EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVW  184 (529)
T ss_dssp             SSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHH
T ss_pred             CCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHH
Confidence            344566788899999999999975 66999999999999999875 566788999999999999999999 899999999


Q ss_pred             HHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC-----hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc
Q 039940           89 VLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS-----DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA  163 (449)
Q Consensus        89 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~  163 (449)
                      +|+|++.++++.+..+.+.|+++.|+.++..++     ..+...++|++++++.............++++.|+.++ .+.
T Consensus       185 aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~  263 (529)
T 3tpo_A          185 ALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHN  263 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSS
T ss_pred             HHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCC
Confidence            999999988999999999999999999998644     45778899999999987755555555678899999988 788


Q ss_pred             cHHHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh
Q 039940          164 RLSMLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL  242 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  242 (449)
                      +++++..++|+|.+++...... ......++++.|+.++.+++..++..++++++|++.+++.....+.+.|+++.|+.+
T Consensus       264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L  343 (529)
T 3tpo_A          264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL  343 (529)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH
Confidence            9999999999999999876332 233447899999999999999999999999999999998888889999999999999


Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCh
Q 039940          243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLI  321 (449)
Q Consensus       243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~  321 (449)
                      +.++++.++..|+|+|+|++.+++.....+.+.|+++.|+.++.++ +..++.+|+|+|+|++. ++++.+..+++.|++
T Consensus       344 L~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i  422 (529)
T 3tpo_A          344 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGII  422 (529)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred             HcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCH
Confidence            9999999999999999999999999999999999999999999999 99999999999999986 678888899999999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhhcc----CCHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          322 VPLVNLLQDAEFDIKKEAAWAISNATKA----GTQE-QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~----~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +.|+++|...+++++..++++|.++...    +..+ ....+.+.|+++.|..+..+++.++++.|..+|.++|...+.
T Consensus       423 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  501 (529)
T 3tpo_A          423 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  501 (529)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999999999853    2233 344556789999999999999999999999999999975543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=9.4e-41  Score=309.50  Aligned_cols=376  Identities=17%  Similarity=0.177  Sum_probs=297.3

Q ss_pred             CCCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------H
Q 039940           12 APSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY-----------P   80 (449)
Q Consensus        12 ~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-----------~   80 (449)
                      .+.+....+.+.++.++..+.+.|+.   ...+.|..+...  .+.+..+++.|++|.|+++|+..+.           +
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~   96 (458)
T 3nmz_A           22 RLTSHLGTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSK   96 (458)
T ss_dssp             -----------------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCH
T ss_pred             CcccccCchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCH
Confidence            34467888999999999999988876   255666666543  4555889999999999999997542           6


Q ss_pred             HHHHHHHHHHHHhcCCChhhhHHHHhCCCh----------HHHHHhhCCCC--hH-----HHH-------HHHHHHHHHh
Q 039940           81 RLQFEAAWVLTNIASGTSVNTKVLIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNIV  136 (449)
Q Consensus        81 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~~l~~~~--~~-----~~~-------~a~~~L~~l~  136 (449)
                      +++..|+|+|.||+.+.++......+.+++          +.+++++.+..  .+     +++       +|+|+|+|++
T Consensus        97 ~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls  176 (458)
T 3nmz_A           97 EARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLS  176 (458)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhc
Confidence            999999999999999888888887777777          66777776542  22     444       8999999996


Q ss_pred             cCCCchhhhHhhcCCHHHHHHHHcc----------cccHHHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhcCC
Q 039940          137 AHSPGCRNLVLHEEALIPLLAQLNE----------HARLSMLRIGTWTLSNLCKGKPQPPFDQ--VRPVLPALAQLIHLD  204 (449)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~  204 (449)
                      .+ +++|+.+.+.|++++|+.++..          +.++.+++.|+|+|.|++.+.+......  ..|++|.|+.+|.++
T Consensus       177 ~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~  255 (458)
T 3nmz_A          177 FD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE  255 (458)
T ss_dssp             TS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS
T ss_pred             CC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC
Confidence            65 7899999999999999999942          2357799999999999998864332222  366799999999999


Q ss_pred             CHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcCChhhHHHHH-hcCCHHHH
Q 039940          205 DEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYL  281 (449)
Q Consensus       205 ~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L  281 (449)
                      +++++..++|+|.|++.. ++.....+.+.|+++.|+.+| .++++.++..|+.+|+|++.++++....+. ..|+++.|
T Consensus       256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L  335 (458)
T 3nmz_A          256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL  335 (458)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence            999999999999999985 566777788999999999975 556788999999999999986566666666 79999999


Q ss_pred             HHHhccCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH
Q 039940          282 LALLINNHKK---SIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI  355 (449)
Q Consensus       282 ~~ll~~~~~~---~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  355 (449)
                      +.+|.++.+.   .+++.|+|+|.|++.   ++++.+..+.+.|+++.|+.+|.+++..++++|+++|.|++.. +++++
T Consensus       336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~  414 (458)
T 3nmz_A          336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQ  414 (458)
T ss_dssp             HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHH
T ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHH
Confidence            9999877222   499999999999996   7889999999999999999999999999999999999999875 78899


Q ss_pred             HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          356 KYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       356 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      ..+.+.|+++.|+++++++++.+++.|+++|.+|+...+
T Consensus       415 ~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999997653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=5.1e-40  Score=321.07  Aligned_cols=369  Identities=16%  Similarity=0.129  Sum_probs=319.3

Q ss_pred             hhcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940           21 LEILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVI-QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        21 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~   97 (449)
                      .+.++.++++|.++  |++++..|++.|..++.+  .+....++ +.|++|.|++++++++ ..++..|+++|+|++.++
T Consensus       376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~  452 (810)
T 3now_A          376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAY  452 (810)
T ss_dssp             HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCc
Confidence            34577888898887  899999999999999654  34445555 5799999999999988 899999999999999854


Q ss_pred             hh-----------------------------h---hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940           98 SV-----------------------------N---TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL  145 (449)
Q Consensus        98 ~~-----------------------------~---~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  145 (449)
                      ++                             .   .+.+++.|++|.|+.++.++++.+++.|+|+|+|++.+ +.++..
T Consensus       453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~  531 (810)
T 3now_A          453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGK  531 (810)
T ss_dssp             CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred             hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH
Confidence            21                             1   26788999999999999999999999999999999965 568999


Q ss_pred             HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCCh--hhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHccc
Q 039940          146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPF--DQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSD  221 (449)
Q Consensus       146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~  221 (449)
                      +.+.|++++|+.++ .+.++..++.|+|+|.+++... +...+  ....+++|.|+.+|.++. ...+..++++|.|++.
T Consensus       532 Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~  610 (810)
T 3now_A          532 VVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS  610 (810)
T ss_dssp             HHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence            99999999999999 6777889999999999999764 21111  123568999999998663 3445689999999999


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHhccCCchhHHHHHHHH
Q 039940          222 GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALLINNHKKSIKKESCWT  300 (449)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~  300 (449)
                      .+++..+.+++.|+++.|+.++.++++.++..|+++++|++.+.+ ....+.+ .|.++.|+.++.++ +..++++|+|+
T Consensus       611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~A  688 (810)
T 3now_A          611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGA  688 (810)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHH
Confidence            988888889999999999999999999999999999999998754 4455555 78999999999998 99999999999


Q ss_pred             HHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC---CH
Q 039940          301 VSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA---DP  376 (449)
Q Consensus       301 l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~---~~  376 (449)
                      |+|++.+++..++.+++ .|+++.|++++.+++.+++..|+|++.|++.+ +++..+++.+.|+++.|+.+++..   ++
T Consensus       689 LanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~  767 (810)
T 3now_A          689 LAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRA  767 (810)
T ss_dssp             HHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTH
T ss_pred             HHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcH
Confidence            99999988888889998 89999999999999999999999999999985 678899999999999999999754   78


Q ss_pred             HHHHHHHHHHHHHHHhhhhhh
Q 039940          377 EIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       377 ~~~~~~~~~l~~l~~~~~~~~  397 (449)
                      ++++.++++|.++.+.+.-..
T Consensus       768 ~i~e~Al~aL~~ll~~g~~~~  788 (810)
T 3now_A          768 KAREVATQCLAAAERYRIIER  788 (810)
T ss_dssp             HHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHhCCCccC
Confidence            999999999999999886543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=3e-38  Score=306.70  Aligned_cols=405  Identities=18%  Similarity=0.185  Sum_probs=344.7

Q ss_pred             hhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940           17 LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG   96 (449)
Q Consensus        17 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~   96 (449)
                      ...+.|++|.++++|+++++.++..|+++|.+++... ......+.+.|++|.|++++++++ .+++..++.+|.+++.+
T Consensus        96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~  173 (529)
T 1jdh_A           96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhC
Confidence            3446789999999999999999999999999998764 456777788999999999999988 89999999999999998


Q ss_pred             ChhhhHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLASP-SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL  175 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l  175 (449)
                      +++.+..+.+.|+++.|+.++.+. ....+..++.+|.+++. .+..+..+.+.|+++.++.++ .+.++.+++.++|++
T Consensus       174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L  251 (529)
T 1jdh_A          174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTL  251 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHH
Confidence            899999999999999999999864 46677788999999986 456778888899999999999 666899999999999


Q ss_pred             HHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhh
Q 039940          176 SNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIP  253 (449)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~  253 (449)
                      .+++...+...  ...+++|.++.++.+++++++..++++|++++.++++....+.+.|+++.|+.++.+  ++++++..
T Consensus       252 ~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~  329 (529)
T 1jdh_A          252 RNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP  329 (529)
T ss_dssp             HHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence            99998864332  346899999999999999999999999999999888788889999999999999976  33689999


Q ss_pred             HHHHHHHhhcCChh---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc
Q 039940          254 ALRTVGNIVTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD  330 (449)
Q Consensus       254 a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  330 (449)
                      ++++|++++..++.   ....+.+.|+++.|+.++.++.++.++..++|+++|++.++. ....+.+.|+++.|++++.+
T Consensus       330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~  408 (529)
T 1jdh_A          330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHH
Confidence            99999999886543   355778899999999999988346899999999999988644 44678899999999999998


Q ss_pred             CchhHHHHHHHHHHH----------------------hhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 039940          331 AEFDIKKEAAWAISN----------------------ATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLEN  388 (449)
Q Consensus       331 ~~~~v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~  388 (449)
                      +++++|..|+|++.|                      ++.  .++.+..+.+.|+++.|+.++.+++++++..+.++|.+
T Consensus       409 ~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~  486 (529)
T 1jdh_A          409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE  486 (529)
T ss_dssp             HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHH
Confidence            888888877766665                      444  35666778899999999999999999999999999999


Q ss_pred             HHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940          389 ILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       389 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      +....              .+...+.+.|+++.|..++.++++++++.|..+++++
T Consensus       487 l~~~~--------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          487 LAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HTTSH--------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HhcCH--------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            87432              2478889999999999999999999999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4.6e-39  Score=303.80  Aligned_cols=364  Identities=18%  Similarity=0.195  Sum_probs=307.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940           66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL  145 (449)
Q Consensus        66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  145 (449)
                      .+|.|+.+|++++ ++++..|+++|.+++.+++..+..+.+.|++|.|+++|.++++.++..|+|+|.|++.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 799999999999999877788889999999999999999999999999999999999988889999


Q ss_pred             HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--------C--------CCHHHH
Q 039940          146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH--------L--------DDEEVL  209 (449)
Q Consensus       146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--------~--------~~~~~~  209 (449)
                      +.+.|+++.++.+|..+.++++++.++|+|.|++..+..+..... |++|.|+.++.        +        .+.++.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995478899999999999999998543333444 99999999993        2        246777


Q ss_pred             HHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCC-----------------
Q 039940          210 RNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTGD-----------------  265 (449)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~-----------------  265 (449)
                      ..++|+|+|++.. ++..+.+.+. |+++.|+.++.+      .+..+...++.++.+++...                 
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677778887 999999999975      45678888999999987321                 


Q ss_pred             ---------------------------------hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--
Q 039940          266 ---------------------------------DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK--  310 (449)
Q Consensus       266 ---------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~--  310 (449)
                                                       +...+.+++.++++.|+.+|.++.++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                             112233445677899999998775789999999999999985432  


Q ss_pred             -HH-HHHH-HCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH------HHHHH
Q 039940          311 -QI-QAVI-DAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP------EIVTV  381 (449)
Q Consensus       311 -~~-~~l~-~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~------~~~~~  381 (449)
                       .. +..+ +.|++|.|++++.+++.++++.|+|+|.|++.+  + ..+.++..|+++.|+++|...++      ++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3344 689999999999999999999999999999884  2 34556677899999999998643      68889


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCC
Q 039940          382 CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG-NNGIREKAVTILETYWLKG  448 (449)
Q Consensus       382 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~i~~~a~~~i~~~~~~~  448 (449)
                      ++++|.+++...+.             +...+.+.||++.|.+|+.++ ++++++.|..+|++||...
T Consensus       397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            99999999865432             478889999999999999999 9999999999999999754

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.8e-38  Score=307.56  Aligned_cols=378  Identities=26%  Similarity=0.328  Sum_probs=334.6

Q ss_pred             CCchhhHhhhcHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 039940           13 PSLNLQTKLEILPAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT   91 (449)
Q Consensus        13 ~~~~~~~~~~~i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~   91 (449)
                      ++.....+.|++|.++++|.+++ +.++..|+++|.+++.+. ......++..|+++.|+.+|.+++ ++++..|+++|+
T Consensus       108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~  185 (528)
T 4b8j_A          108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALG  185 (528)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred             chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            34455667899999999999876 999999999999998764 566778889999999999999988 899999999999


Q ss_pred             HhcCCChhhhHHHHhCCChHHHHHhh-CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940           92 NIASGTSVNTKVLIDHGAVPIFVKLL-ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRI  170 (449)
Q Consensus        92 ~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~  170 (449)
                      +++.+++..+..+...|+++.|+.++ .+.+..++..++|+|++++...+.... ....++++.++.++ .+.++.++..
T Consensus       186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL-~~~~~~v~~~  263 (528)
T 4b8j_A          186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLI-HSNDEEVLTD  263 (528)
T ss_dssp             HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHT-TCCCHHHHHH
T ss_pred             HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHH-CCCCHHHHHH
Confidence            99998888999999999999999999 568899999999999999987654433 34578999999999 7789999999


Q ss_pred             HHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CC
Q 039940          171 GTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SP  248 (449)
Q Consensus       171 a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~  248 (449)
                      ++|+|.+++...+.. ......++++.++.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++
T Consensus       264 a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  343 (528)
T 4b8j_A          264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK  343 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence            999999999875322 2333468999999999999999999999999999998888888899999999999999998 89


Q ss_pred             cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHH
Q 039940          249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNL  327 (449)
Q Consensus       249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~l  327 (449)
                      .++..|+++|+|++.+++.....+++.++++.|+.++.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+
T Consensus       344 ~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l  422 (528)
T 4b8j_A          344 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL  422 (528)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999998888888889999999999999999 999999999999999974 78888899999999999999


Q ss_pred             hhcCchhHHHHHHHHHHHhhccCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          328 LQDAEFDIKKEAAWAISNATKAGTQ----------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       328 l~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +..++++++..++++|.+++..+..          .....+.+.|+++.|..+.++.+++++..|..++.+++...+.
T Consensus       423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~  500 (528)
T 4b8j_A          423 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED  500 (528)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999976322          2466777899999999999999999999999999999976544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.3e-39  Score=315.41  Aligned_cols=407  Identities=14%  Similarity=0.120  Sum_probs=336.9

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc----CCHHHHHHhhcCC--CCHHHHHHHHHHHHH
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA----GIVPRFVEFLLRE--DYPRLQFEAAWVLTN   92 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~----~~i~~L~~ll~~~--~~~~~~~~a~~~L~~   92 (449)
                      .+.| +|.|+.++++++..++..|+.+|+++.+....++....+..    .+++.++++|.++  + .+++..|+++|.+
T Consensus       328 ~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLay  405 (810)
T 3now_A          328 CEQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAY  405 (810)
T ss_dssp             HHHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHH
T ss_pred             HHcC-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Confidence            3445 49999999999999999999999999753211111111222    3367788888888  5 7999999999999


Q ss_pred             hcCCChhhhHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc-----------------------------h
Q 039940           93 IASGTSVNTKVLI-DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG-----------------------------C  142 (449)
Q Consensus        93 l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-----------------------------~  142 (449)
                      ++. .++.+..++ +.|++|.|+.++.+++..++..++|+|+|++.+.+.                             .
T Consensus       406 LS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v  484 (810)
T 3now_A          406 LTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI  484 (810)
T ss_dssp             HTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred             HhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence            998 566666666 569999999999999999999999999999975421                             1


Q ss_pred             h---hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 039940          143 R---NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNL  219 (449)
Q Consensus       143 ~---~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  219 (449)
                      +   +.+.+.|+++.|+.++ .++++.+++.++|+|.|++.+...+......|++|.|+.++.++++..+..++|+|.++
T Consensus       485 ~~r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL  563 (810)
T 3now_A          485 NKRITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI  563 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            2   5667889999999999 77899999999999999997655555555689999999999999999999999999999


Q ss_pred             ccCChhHHHH--HHHhCcHHHHHHhhCCCCCc-chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940          220 SDGTNDKIQA--VIEAGVCGPLVELLGHPSPS-VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE  296 (449)
Q Consensus       220 ~~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  296 (449)
                      +...+.....  ....+++++|+.+|.++... .+..|+++|.|++..++...+.+++.|+++.|+.++.++ ++.+++.
T Consensus       564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~  642 (810)
T 3now_A          564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRA  642 (810)
T ss_dssp             HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHH
T ss_pred             hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHH
Confidence            8653322110  01136899999999865443 346899999999999888888899999999999999998 9999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCC
Q 039940          297 SCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCA  374 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~  374 (449)
                      |+++++|++.+. +.+..+.+ .|.++.|+.++..++..++..|+|+|++++.+ ++...+.+++ .|+++.|+.++.++
T Consensus       643 A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~  720 (810)
T 3now_A          643 AAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANP  720 (810)
T ss_dssp             HHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred             HHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCC
Confidence            999999998754 55666665 78999999999999999999999999999986 5778899998 89999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC---CCHHHHHHHHHHHHHhc
Q 039940          375 DPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH---GNNGIREKAVTILETYW  445 (449)
Q Consensus       375 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~i~~~a~~~i~~~~  445 (449)
                      +.+++..+++++.|+....+.             ....+.+.|+++.|..+...   .++++.+.|.+.++...
T Consensus       721 d~~vq~~A~~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          721 SPAVQHRGIVIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            999999999999999974332             37888999999999999543   47999999999988753

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.4e-38  Score=304.69  Aligned_cols=377  Identities=24%  Similarity=0.339  Sum_probs=332.2

Q ss_pred             chhhHhhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 039940           15 LNLQTKLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI   93 (449)
Q Consensus        15 ~~~~~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l   93 (449)
                      .....+.|.+|.++++|.++ ++.++..|+++|.+++.+. ......++..|+++.|+.+|.+++ ++++..|+++|+++
T Consensus       123 ~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l  200 (530)
T 1wa5_B          123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNV  200 (530)
T ss_dssp             HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence            34556779999999999987 8999999999999998754 456677888999999999999988 89999999999999


Q ss_pred             cCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940           94 ASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  173 (449)
                      +..+++.+..+...|+++.|+.++.+.+..++..++|+|++++.............++++.++.++ .+.++.++..++|
T Consensus       201 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~  279 (530)
T 1wa5_B          201 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACW  279 (530)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHH
T ss_pred             hCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHH
Confidence            998888999999999999999999999999999999999999977622233445678999999999 6778999999999


Q ss_pred             HHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh
Q 039940          174 TLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI  252 (449)
Q Consensus       174 ~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  252 (449)
                      +|.+++...+.. ......++++.|+.++.++++.++..++++|++++.+.+...+.+.+.|+++.|+.+|.++++.++.
T Consensus       280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~  359 (530)
T 1wa5_B          280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK  359 (530)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHH
Confidence            999999875322 2223358999999999999999999999999999998888888888899999999999999999999


Q ss_pred             hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHCCChHHHHHHhh
Q 039940          253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNR--KQIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~~~~l~~~~~~~~L~~ll~  329 (449)
                      .|+++|++++.+++...+.+++.++++.|+.++.++ ++.++..|+|+|+|++. +.+  +....+++.|+++.|+.++.
T Consensus       360 ~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~  438 (530)
T 1wa5_B          360 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE  438 (530)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh
Confidence            999999999998888888888999999999999988 99999999999999997 344  67788889999999999999


Q ss_pred             cCchhHHHHHHHHHHHhhccCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          330 DAEFDIKKEAAWAISNATKAGTQ----------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       330 ~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +.++.++..++++|.+++..+..          .....+.+.|+++.|..++.++++++++.+..+|.+++...+.
T Consensus       439 ~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~  514 (530)
T 1wa5_B          439 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  514 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence            99999999999999999986322          2456677899999999999999999999999999999976543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.9e-37  Score=303.71  Aligned_cols=402  Identities=18%  Similarity=0.191  Sum_probs=344.5

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~   97 (449)
                      ..+.++++.++++|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ .+++..++.+|.+++..+
T Consensus        94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~  171 (644)
T 2z6h_A           94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN  171 (644)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcC
Confidence            445689999999999999999999999999998875 566777888999999999999998 789999999999999878


Q ss_pred             hhhhHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940           98 SVNTKVLIDHGAVPIFVKLLASPS-DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS  176 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~  176 (449)
                      ++.+..+.+.|+++.|+.++.+.+ ..++..++.+|.+++. .+..+..+.+.|+++.++.++ .+.+..+++.++|+|.
T Consensus       172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~  249 (644)
T 2z6h_A          172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR  249 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHH
Confidence            999999999999999999998754 6788999999999985 456788888999999999999 6678999999999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC--CcchhhH
Q 039940          177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS--PSVLIPA  254 (449)
Q Consensus       177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~a  254 (449)
                      +++...+..  ....++++.|+.++.+++++++..++++|.+++..++.....+.+.|+++.|+.++.+.+  +.++..|
T Consensus       250 nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a  327 (644)
T 2z6h_A          250 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA  327 (644)
T ss_dssp             HHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence            999876432  334689999999999999999999999999999988887888999999999999998733  6899999


Q ss_pred             HHHHHHhhcCChh---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940          255 LRTVGNIVTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA  331 (449)
Q Consensus       255 ~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~  331 (449)
                      +++|++++...++   ....+.+.++++.|+.+|.++.++.+++.|+|+|+|++.+... ...+.+.|+++.|++++.+.
T Consensus       328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~  406 (644)
T 2z6h_A          328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRA  406 (644)
T ss_dssp             HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhcc
Confidence            9999999875432   2334778999999999999873468999999999999886543 47888999999999999875


Q ss_pred             c----------------------hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940          332 E----------------------FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI  389 (449)
Q Consensus       332 ~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l  389 (449)
                      +                      .+++..++.+|.+++.  +...+..+.+.|+++.|+.++.+.+++++..++++|.++
T Consensus       407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l  484 (644)
T 2z6h_A          407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL  484 (644)
T ss_dssp             HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            4                      3456667777777776  456677888999999999999999999999999999998


Q ss_pred             HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940          390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE  442 (449)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~  442 (449)
                      ....              .+...+.+.|+++.|..+..++++++++.|...+.
T Consensus       485 ~~~~--------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~  523 (644)
T 2z6h_A          485 AQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF  523 (644)
T ss_dssp             HTSH--------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HcCH--------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHH
Confidence            8532              24788899999999999999999999665444433

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3.9e-38  Score=299.64  Aligned_cols=368  Identities=25%  Similarity=0.337  Sum_probs=325.8

Q ss_pred             hcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           22 EILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        22 ~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      +.+|.+++.|+++ ++.++..|+++|.+++.+. .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            8899999999998 8999999999999998754 455667788999999999999988 899999999999999988889


Q ss_pred             hHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          101 TKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      +..+.+.|+++.|+.++.+ .+..++..++|+|++++... +...... ..++++.++.++ .+.++.++..++|++.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999995 78999999999999999765 4433333 378999999999 678899999999999999


Q ss_pred             hcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          179 CKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       179 ~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      +...+ ........++++.++.++.++++.++..++++|++++.+.+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            98752 22223346899999999999999999999999999999888877778888999999999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIK  336 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~  336 (449)
                      |++++.+++...+.+++.++++.|+.++.++ ++.+|..|+|+|+|++.+ +++....+++.|+++.|++++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999998 999999999999999974 77888888899999999999999999999


Q ss_pred             HHHHHHHHHhhccCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          337 KEAAWAISNATKAGTQ----------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       337 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      ..|+++|.+++..+..          .....+.+.|+++.|..+++++++++++.++.+|.+++...+
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999986422          234667788999999999999999999999999999996544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.7e-39  Score=305.36  Aligned_cols=364  Identities=16%  Similarity=0.179  Sum_probs=303.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      .+|.+++.|++++++++..|+++|.+++.++ .+....+.+.|++|.|+++|++++ ++++..|+++|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999997543 444668899999999999999988 89999999999999997799999


Q ss_pred             HHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc--------c-------ccHH
Q 039940          103 VLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE--------H-------ARLS  166 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~  166 (449)
                      .+++.|++|.|+++|. ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++..        .       .+++
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999988 678887888 999999999931        1       3567


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhh-chHHHHHHhhcC------CCHHHHHHHHHHHHHcccCC----------------
Q 039940          167 MLRIGTWTLSNLCKGKPQPPFDQVR-PVLPALAQLIHL------DDEEVLRNVCWTLSNLSDGT----------------  223 (449)
Q Consensus       167 ~~~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~~----------------  223 (449)
                      +++.++|+|.|++..+......... |+++.|+.++.+      .+.+++..+++++.+++...                
T Consensus       159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~  238 (457)
T 1xm9_A          159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence            8889999999999873222222223 899999999985      45678888888898886321                


Q ss_pred             ----------------------------------hhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChhh
Q 039940          224 ----------------------------------NDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGDDFQ  268 (449)
Q Consensus       224 ----------------------------------~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~  268 (449)
                                                        +...+.+++.++++.++.+|.++ ++.+++.|+|+|+|++.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              11122344557788889988764 5789999999999999876442


Q ss_pred             H----HHHH-hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc------hhHHH
Q 039940          269 T----QCVI-NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE------FDIKK  337 (449)
Q Consensus       269 ~----~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~------~~v~~  337 (449)
                      .    +.++ +.|+++.|+.+|.++ +.+++++|+|+|+|++.+. + ...++..|+++.|+++|...+      .++..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~-~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH-H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2    3344 689999999999999 9999999999999998753 3 345666689999999998864      36888


Q ss_pred             HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhh
Q 039940          338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~  394 (449)
                      .++++|.++... +++....+.+.|+++.|.+++.++ ++++++.|.++|++++...+
T Consensus       396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            999999999886 567888888999999999999999 99999999999999986543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.2e-38  Score=298.64  Aligned_cols=369  Identities=19%  Similarity=0.195  Sum_probs=305.2

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG-   96 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-   96 (449)
                      .++.+.+|.++++|.++++.++..|+++|.+++.+. .+.+..+++.|++|.|+++|++++ .+++..|+++|.|++.+ 
T Consensus        44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSS
T ss_pred             CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccC
Confidence            345678999999999999999999999999998754 677888999999999999999998 89999999999999985 


Q ss_pred             ChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---------------
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---------------  160 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------  160 (449)
                      +++++..+.+.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.+ ++++.|+.++.               
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k  199 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCK  199 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC--------
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccc
Confidence            68999999999999999999986 6789999999999999874 566777764 57999998762               


Q ss_pred             --ccccHHHHHHHHHHHHHhhcCCCC-CChh-hhhchHHHHHHhhcC------CCHHHHHHHHHHHHHcccCChh-----
Q 039940          161 --EHARLSMLRIGTWTLSNLCKGKPQ-PPFD-QVRPVLPALAQLIHL------DDEEVLRNVCWTLSNLSDGTND-----  225 (449)
Q Consensus       161 --~~~~~~~~~~a~~~l~~l~~~~~~-~~~~-~~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~~~~-----  225 (449)
                        ...++.++++++++|.||+...+. +... ...++++.|+.++++      .+...++.++++|.||+.....     
T Consensus       200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~  279 (584)
T 3l6x_A          200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA  279 (584)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence              123679999999999999987643 2222 236778899998874      4678999999999999865211     


Q ss_pred             --------------------HHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChh---h-HHHHHhcCCHHH
Q 039940          226 --------------------KIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDF---Q-TQCVINHGAVPY  280 (449)
Q Consensus       226 --------------------~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~---~-~~~~~~~~~l~~  280 (449)
                                          ..+.+.+.++++.++.++. +.++.+++.|+++|.|++.+...   . ...+.+.++++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~  359 (584)
T 3l6x_A          280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA  359 (584)
T ss_dssp             CC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred             hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence                                0112233355678888885 46788999999999999987532   2 223445789999


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--------chhHHHHHHHHHHHhhccCCH
Q 039940          281 LLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--------EFDIKKEAAWAISNATKAGTQ  352 (449)
Q Consensus       281 L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~  352 (449)
                      |+.+|.++ +..+++.|+|+|+|++.+.. . +..+..|+++.|+++|.++        +.+++..|+++|.|++.. ++
T Consensus       360 Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~  435 (584)
T 3l6x_A          360 IADLLTNE-HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NL  435 (584)
T ss_dssp             HHHGGGCS-CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHHHcCC-CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CH
Confidence            99999999 99999999999999997542 2 2445779999999999876        357899999999999876 78


Q ss_pred             HHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 039940          353 EQIKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       353 ~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~  394 (449)
                      ++.+.+.+.|+++.|+.++.+.  .+.+.+.|.++|+++..+.+
T Consensus       436 ~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          436 EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            9999999999999999999986  78899999999999997554

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.9e-35  Score=296.42  Aligned_cols=406  Identities=18%  Similarity=0.183  Sum_probs=348.2

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~   97 (449)
                      ..+.|+++.++++|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ .+++..++.+|.+++..+
T Consensus       230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCC
Confidence            445689999999999999999999999999998765 556667778999999999999988 899999999999999888


Q ss_pred             hhhhHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940           98 SVNTKVLIDHGAVPIFVKLLASPS-DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS  176 (449)
Q Consensus        98 ~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~  176 (449)
                      ++.+..+.+.|+++.|+.++.+.+ ...++.++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..+++.++|+|.
T Consensus       308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~  385 (780)
T 2z6g_A          308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR  385 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHH
Confidence            999999999999999999998755 55677889999999864 46677888899999999999 6678899999999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCC-cchhhH
Q 039940          177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSP-SVLIPA  254 (449)
Q Consensus       177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~-~v~~~a  254 (449)
                      +++...+..  ....++++.|+.++.+.+++++..++++|++++..++.....+.+.|+++.|+.++.+ ++. .++..|
T Consensus       386 ~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~A  463 (780)
T 2z6g_A          386 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA  463 (780)
T ss_dssp             HHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHH
Confidence            999886432  2346899999999999999999999999999999888888889999999999999986 333 899999


Q ss_pred             HHHHHHhhcCChh---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940          255 LRTVGNIVTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA  331 (449)
Q Consensus       255 ~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~  331 (449)
                      +++|++++..+.+   ....+.+.++++.|+.+|.++.++.+++.|+|+|+|++.++ .....+.+.|+++.|+.++.++
T Consensus       464 l~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~  542 (780)
T 2z6g_A          464 ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRA  542 (780)
T ss_dssp             HHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhc
Confidence            9999999876443   23467789999999999998833599999999999998754 4557788999999999999765


Q ss_pred             c----------------------hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940          332 E----------------------FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI  389 (449)
Q Consensus       332 ~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l  389 (449)
                      +                      .+++..++.+|.+++.  +++.+..+.+.|+++.|+.++.+.++.++..++.+|.++
T Consensus       543 ~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L  620 (780)
T 2z6g_A          543 HQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL  620 (780)
T ss_dssp             HHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            4                      3466678888888876  567777788999999999999999999999999999999


Q ss_pred             HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      ....              .+...+.+.|+++.|..++.+++++++..|...+.++..
T Consensus       621 ~~~~--------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          621 AQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HTSH--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             hcCH--------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            7432              247889999999999999999999998887777766543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=6.2e-36  Score=283.07  Aligned_cols=367  Identities=19%  Similarity=0.222  Sum_probs=303.2

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcC-CCc
Q 039940           63 QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH-SPG  141 (449)
Q Consensus        63 ~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~  141 (449)
                      ..+.++.|+.+|.+++ ++++..|+++|.+++.++++++..+.+.|+||.|+++|.+++..+++.|+|+|.||+.. ++.
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4678999999999998 89999999999999988899999999999999999999999999999999999999985 678


Q ss_pred             hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------------------C
Q 039940          142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH------------------L  203 (449)
Q Consensus       142 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------------------~  203 (449)
                      .+..+.+.|+++.|+.+|....+.++++.++++|++|+..+. .+.....+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            999999999999999999555788999999999999998653 333344678999999771                  2


Q ss_pred             CCHHHHHHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChh---------
Q 039940          204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTGDDF---------  267 (449)
Q Consensus       204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~---------  267 (449)
                      .+.+++.++.++|.|++..+++..+.+.+. |+++.|+.+++.      .+....+.|+++|.|++.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999999887766767775 667899999864      4566889999999999875211         


Q ss_pred             ----------------hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH---HHHH-HHHHCCChHHHHHH
Q 039940          268 ----------------QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR---KQIQ-AVIDAGLIVPLVNL  327 (449)
Q Consensus       268 ----------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~---~~~~-~l~~~~~~~~L~~l  327 (449)
                                      ..+.+.+.++++.|+.+|....++.+++.|+|+|.|++.+..   ...+ .+.+.++++.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                            111122335577889999654488999999999999987642   2223 33356889999999


Q ss_pred             hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 039940          328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA--------DPEIVTVCLKGLENILKVGEAKKNR  399 (449)
Q Consensus       328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~~~~~~~~~l~~l~~~~~~~~~~  399 (449)
                      |..++.+++..|+++|.||+.+..  . +..+..|+++.|+.+|.+.        +.+++..++++|.+++...+.    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~----  436 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE----  436 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence            999999999999999999998642  2 3345788999999999876        357888999999999965443    


Q ss_pred             CCCCCcccHHHHHHHhcchHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC
Q 039940          400 GSTIGDVNQYARLVEGAEGFKKIEDLKSHG--NNGIREKAVTILETYWLK  447 (449)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~i~~~a~~~i~~~~~~  447 (449)
                               ....+.+.|+++.|.+|..+.  .+.+++.|..++.+++..
T Consensus       437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence                     267788999999999998775  899999999999998754

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=282.05  Aligned_cols=331  Identities=18%  Similarity=0.166  Sum_probs=280.9

Q ss_pred             hhhHhhhcHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCH----------HHHHHh
Q 039940           16 NLQTKLEILPAMVAGVWSD------------DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIV----------PRFVEF   73 (449)
Q Consensus        16 ~~~~~~~~i~~l~~~l~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i----------~~L~~l   73 (449)
                      ....+.|.+|.++++|+..            ++++++.|+++|.+++.+. .+......+.|++          +.++++
T Consensus        64 ~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  142 (458)
T 3nmz_A           64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEW  142 (458)
T ss_dssp             HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            5578899999999999963            3799999999999999987 6677777777777          667777


Q ss_pred             hcCCC-CHH-----HHH-------HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-----------CChHHHHHHH
Q 039940           74 LLRED-YPR-----LQF-------EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-----------PSDDVREQAV  129 (449)
Q Consensus        74 l~~~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----------~~~~~~~~a~  129 (449)
                      +.+.. ..+     +++       +|+|+|.|++. ++++|+.+.+.|+++.|+.++..           .++.++..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa  221 (458)
T 3nmz_A          143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG  221 (458)
T ss_dssp             HTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             HHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHH
Confidence            77652 112     434       99999999987 59999999999999999999942           3477999999


Q ss_pred             HHHHHHhcCCCchhhhHh-hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-cCCC
Q 039940          130 WALGNIVAHSPGCRNLVL-HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLI-HLDD  205 (449)
Q Consensus       130 ~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~  205 (449)
                      |+|.|++.+++..+..+. ..|+++.|+.+| .+.+++++..++|+|.||+...  ..+......|++|.|+.+| .+.+
T Consensus       222 ~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~  300 (458)
T 3nmz_A          222 MALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK  300 (458)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS
T ss_pred             HHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC
Confidence            999999988876776665 456699999999 6889999999999999999852  2233444579999999975 5678


Q ss_pred             HHHHHHHHHHHHHcccCChhHHHHHH-HhCcHHHHHHhhCCCCCc----chhhHHHHHHHhhc---CChhhHHHHHhcCC
Q 039940          206 EEVLRNVCWTLSNLSDGTNDKIQAVI-EAGVCGPLVELLGHPSPS----VLIPALRTVGNIVT---GDDFQTQCVINHGA  277 (449)
Q Consensus       206 ~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~----v~~~a~~~l~~l~~---~~~~~~~~~~~~~~  277 (449)
                      ..++..++.+|+|++...++....+. ..|+++.|+.+|.+++..    ++..|+++|.|++.   .+++.++.+.+.|+
T Consensus       301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~  380 (458)
T 3nmz_A          301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC  380 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence            99999999999999985544444455 789999999999987653    89999999999997   67888889999999


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                      ++.|+.+|.++ +..++++|+|+|+|++.++++.+..+++.|+++.|++++.++++.+++.|+++|.|++.+.
T Consensus       381 i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          381 LQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999 9999999999999999888999999999999999999999999999999999999999873

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=6.5e-36  Score=290.26  Aligned_cols=403  Identities=17%  Similarity=0.167  Sum_probs=339.0

Q ss_pred             hhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           21 LEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        21 ~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      .+.++.+++.|.+ +++.++..|+.+|.+++..  .+....+.+.|+++.|++++++++ ++++..|+++|.+++.+++.
T Consensus        58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~  134 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcc
Confidence            4789999999975 5899999999999999654  457788889999999999999998 89999999999999997677


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      .+..+.+.|+++.|++++.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+...+..++.++.+++
T Consensus       135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  214 (529)
T 1jdh_A          135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  214 (529)
T ss_dssp             HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence            88888899999999999999999999999999999999888888888899999999999966666778888999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      ............++++.++.++.++++.++..+++++.+++...+...   ...++++.|+.++.+++++++..++++|+
T Consensus       215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  291 (529)
T 1jdh_A          215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            865444444457899999999999999999999999999997754321   12378999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHCCChHHHHHHhhcCc-hh
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRK---QIQAVIDAGLIVPLVNLLQDAE-FD  334 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~-~~  334 (449)
                      +++..+++....+.+.|+++.|+.++.+.. ++.++..|+++|+|++.++++   .+..+.+.|+++.|++++.+++ +.
T Consensus       292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~  371 (529)
T 1jdh_A          292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  371 (529)
T ss_dssp             HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence            999988888888999999999999997631 478999999999999875432   4567788999999999999886 59


Q ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH----------------------HHHh
Q 039940          335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLEN----------------------ILKV  392 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~----------------------l~~~  392 (449)
                      ++..++|+|+|++..  ++....+.+.|+++.|+.++.+++++++..+.|++.+                      +...
T Consensus       372 v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~  449 (529)
T 1jdh_A          372 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  449 (529)
T ss_dssp             HHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC
Confidence            999999999999984  3445788899999999999988777777766665554                      3322


Q ss_pred             hhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          393 GEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      .              .....+.+.|+++.|..+..+++++++..+...+.++-
T Consensus       450 ~--------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          450 V--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             H--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             c--------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            1              12566888999999999999999999999998887754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=286.94  Aligned_cols=404  Identities=18%  Similarity=0.177  Sum_probs=345.0

Q ss_pred             hhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           21 LEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        21 ~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      .+.++.+++.|.++ ++.++..|+.+|.+++..  .+....+.+.|+++.|++++++++ +.++..|+++|.+++...+.
T Consensus        55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~  131 (644)
T 2z6h_A           55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG  131 (644)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTT
T ss_pred             cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcch
Confidence            47899999999864 899999999999998654  457788889999999999999998 89999999999999987677


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      .+..+.+.|+++.|+.+|.+++..++..++.+|.+++...+..+..+.+.|+++.++.++.......++..++.+|.+++
T Consensus       132 ~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs  211 (644)
T 2z6h_A          132 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  211 (644)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence            88888899999999999999999999999999999998888888888899999999999966666788999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      ............++++.++.++.+++..++..++++|.+++...+..   ....++++.|+.++.+++++++..++++|+
T Consensus       212 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~  288 (644)
T 2z6h_A          212 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS  288 (644)
T ss_dssp             TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            87654455555789999999999999999999999999999765431   112268999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHhhcCc-hh
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNHK-KSIKKESCWTVSNITAGNR---KQIQAVIDAGLIVPLVNLLQDAE-FD  334 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~---~~~~~l~~~~~~~~L~~ll~~~~-~~  334 (449)
                      +++..++..++.+.+.|+++.|+.++.+..+ +.++..|+++|+|++..++   .....+.+.|+++.|+++|.+++ +.
T Consensus       289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~  368 (644)
T 2z6h_A          289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  368 (644)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchH
Confidence            9999888888889999999999999987423 7899999999999987432   23344778899999999999874 79


Q ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 039940          335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVCLKGLENILKV  392 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~  392 (449)
                      +++.|+++|+|++..  ++....+.+.|+++.|+.++.+.+                      .+++..++.+|.+++..
T Consensus       369 v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~  446 (644)
T 2z6h_A          369 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  446 (644)
T ss_dssp             HHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence            999999999999985  344588889999999999987643                      45666777788777754


Q ss_pred             hhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          393 GEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      ..              ....+.+.|+++.|..+..+.+++++..|...+.++..
T Consensus       447 ~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          447 VH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             HH--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HH--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            42              25678889999999999999999999999988877653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=3.2e-34  Score=287.67  Aligned_cols=403  Identities=18%  Similarity=0.182  Sum_probs=342.3

Q ss_pred             hhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           21 LEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        21 ~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      .+.++.|++.|.+ +++.++..|+.+|.+++..  ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++...++
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~  267 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEG  267 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTT
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChh
Confidence            3789999999985 4899999999999998654  455777888999999999999998 89999999999999997778


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      .+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+..+.+.++++.++.++........+..++.++.+++
T Consensus       268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls  347 (780)
T 2z6g_A          268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  347 (780)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            88888899999999999999999999999999999998888888888888999999999966666677788999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      ............++++.|+.++.+.+..++..++++|.+++......   ....++++.|+.++.+.+++++..|+++|+
T Consensus       348 ~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~  424 (780)
T 2z6g_A          348 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS  424 (780)
T ss_dssp             TSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            86544444445789999999999999999999999999999765431   112368999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHCCChHHHHHHhhcCch-h
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNHK-KSIKKESCWTVSNITAGNRK---QIQAVIDAGLIVPLVNLLQDAEF-D  334 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~~-~  334 (449)
                      +++.+++..+..+.+.|+++.|+.+|.+..+ ..++..|+++|+|++..+++   ....+...|+++.|++++..++. .
T Consensus       425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~  504 (780)
T 2z6g_A          425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP  504 (780)
T ss_dssp             HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence            9999888888889999999999999986423 38999999999999874432   24467788999999999998864 9


Q ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 039940          335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVCLKGLENILKV  392 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~  392 (449)
                      ++..|+++|+|++..  ++....+.+.|+++.|+.++.+.+                      ++++..++.+|.++...
T Consensus       505 v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~  582 (780)
T 2z6g_A          505 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD  582 (780)
T ss_dssp             HHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence            999999999999974  455678889999999999987643                      34666788888887643


Q ss_pred             hhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          393 GEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      ..              ....+.+.|+++.|..+..+++++++..|...+.++.
T Consensus       583 ~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          583 IH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             HH--------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hh--------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            21              2567889999999999999999999999998887653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3e-31  Score=239.03  Aligned_cols=277  Identities=18%  Similarity=0.190  Sum_probs=239.5

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc----------cccHHHHHHHHHHHHHhhcCCCCCChh
Q 039940          119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE----------HARLSMLRIGTWTLSNLCKGKPQPPFD  188 (449)
Q Consensus       119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~  188 (449)
                      .+.......|+|+|+|++.+ +++|+.+.+.|++++|+.++..          ..++.+++.|+|+|.|++.+.......
T Consensus        43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34456677899999999987 6899999999999999999942          135789999999999999886422222


Q ss_pred             h--hhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcC
Q 039940          189 Q--VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELL-GHPSPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       189 ~--~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~l~~l~~~  264 (449)
                      .  ..|++|.|+.+|.+++++++..++++|.|++.. ++.....+.+.|+++.|+.+| .+++++++..|+.+|+|++.+
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            2  356799999999999999999999999999985 556677788999999999974 567788999999999999996


Q ss_pred             ChhhHHHHH-hcCCHHHHHHHhccCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940          265 DDFQTQCVI-NHGAVPYLLALLINNHKK---SIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK  337 (449)
Q Consensus       265 ~~~~~~~~~-~~~~l~~L~~ll~~~~~~---~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  337 (449)
                      +++.+..+. ..|+++.|+.+|.++.+.   .+++.|+|+|.|++.   ++++.+..+.+.|+++.|+.+|.+++..+++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            666666666 799999999999877222   599999999999986   6888999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940          338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  397 (449)
                      .|+++|.|++.. +++.++.+.+.|+++.|+++++++++.+++.+.++|.+|+...+...
T Consensus       282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999865 78899999999999999999999999999999999999998765543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.1e-31  Score=241.81  Aligned_cols=268  Identities=21%  Similarity=0.189  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCCCchhhhHh-
Q 039940           80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNIVAHSPGCRNLVL-  147 (449)
Q Consensus        80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-  147 (449)
                      ...+.+|+++|.|++. ++++|+.+.+.|+++.|+.+|..           .++.++..|+|+|.|++..++..+..+. 
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4556689999999998 58999999999999999999942           2478999999999999988876777664 


Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCCh
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                      ..|+++.|+.+| .+.++++++.++|+|.||+...  ..+......|++|.|+.+| ++.+.++++.++.+|.|++...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            456699999999 7888999999999999999862  2233444579999999975 56789999999999999998665


Q ss_pred             hHHHHHH-HhCcHHHHHHhhCCCCC----cchhhHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940          225 DKIQAVI-EAGVCGPLVELLGHPSP----SVLIPALRTVGNIVT---GDDFQTQCVINHGAVPYLLALLINNHKKSIKKE  296 (449)
Q Consensus       225 ~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  296 (449)
                      +....+. ..|+++.|+.+|.++++    +++..|+++|.|++.   .+++.++.+.+.|+++.|+.+|.++ +..++++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5445555 78999999999988665    389999999999997   6788888999999999999999998 9999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                      |+|+|+|++.++++.+..+++.|+++.|++++.++++.+++.|+++|.|++...
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999888999999999999999999999999999999999999999874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=7.1e-28  Score=210.31  Aligned_cols=240  Identities=27%  Similarity=0.388  Sum_probs=221.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      |.++.|+++|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.++.++++.++..++++|++++..++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999999 89999999999999998888999999999999999999999999999999999999998888999


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                      .+.+.|+++.++.++ ++.+++++..++++|.+++...+ ........++++.++.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 67889999999999999996542 3333444789999999999999999999999999999988


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940          224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN  303 (449)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  303 (449)
                      +...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88878899999999999999999999999999999999998888888899999999999999998 99999999999999


Q ss_pred             HhcC
Q 039940          304 ITAG  307 (449)
Q Consensus       304 l~~~  307 (449)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9864

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.3e-27  Score=208.68  Aligned_cols=241  Identities=25%  Similarity=0.391  Sum_probs=222.8

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCC
Q 039940          108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPP  186 (449)
Q Consensus       108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~  186 (449)
                      |.++.|+.+|.+++++++..|+++|.+++...+..+..+.+.|+++.++.++ .+.+++++..++++|.+++... ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5689999999999999999999999999998887888888999999999999 6778999999999999999885 3333


Q ss_pred             hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940          187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD  266 (449)
Q Consensus       187 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  266 (449)
                      .....++++.++.++.+++++++..++++|.+++...+.....+.+.|+++.++.++.++++.++..++++|++++..++
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            44457899999999999999999999999999998888888889999999999999999999999999999999999888


Q ss_pred             hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940          267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA  346 (449)
Q Consensus       267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l  346 (449)
                      ...+.+.+.|+++.|+.++.++ ++.++..|+++|++++.+++.....+.+.|+++.|++++.+++++++..|+++|.++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            8888889999999999999998 999999999999999998889999999999999999999999999999999999999


Q ss_pred             hccC
Q 039940          347 TKAG  350 (449)
Q Consensus       347 ~~~~  350 (449)
                      ....
T Consensus       240 ~~~~  243 (252)
T 4hxt_A          240 KSGG  243 (252)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            9864

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=5.4e-28  Score=210.97  Aligned_cols=239  Identities=32%  Similarity=0.494  Sum_probs=220.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      ..++.++..|.+++ ++++..|+++|.++...+++.+..+.+.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45889999999999 79999999999887765778888999999999999999999999999999999999998888899


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                      .+.+.|+++.++.++ +++++.++..++++|.+++...+.. ......++++.++.++.++++.++..++++|.+++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6688999999999999999987544 44555789999999999999999999999999999988


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940          224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN  303 (449)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  303 (449)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988888888899999999999999999 99999999999999


Q ss_pred             Hhc
Q 039940          304 ITA  306 (449)
Q Consensus       304 l~~  306 (449)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            964

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=1e-27  Score=209.21  Aligned_cols=240  Identities=33%  Similarity=0.509  Sum_probs=217.3

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ...++.+++.|++++++++..|++.|.++++.. .+....+++.|+++.|+++|++++ ++++..|+++|++++.++++.
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~   88 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQ   88 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHH
Confidence            456899999999999999999999998887763 677888999999999999999999 899999999999999988999


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      +..+.+.|+++.|+.++.++++.++..|+++|++++...+.....+.+.|+++.++.++ ++.++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999887765547788999999999999 77789999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          181 GKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       181 ~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      ..+.. ......++++.++.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+++++++..|+++|+
T Consensus       168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~  247 (252)
T 4db8_A          168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE  247 (252)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred             CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            75322 23334789999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             Hhhc
Q 039940          260 NIVT  263 (449)
Q Consensus       260 ~l~~  263 (449)
                      +++.
T Consensus       248 ~l~~  251 (252)
T 4db8_A          248 KLQS  251 (252)
T ss_dssp             TTC-
T ss_pred             HHhc
Confidence            9875

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=2.7e-26  Score=201.21  Aligned_cols=234  Identities=14%  Similarity=0.128  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940          206 EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL  284 (449)
Q Consensus       206 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  284 (449)
                      .+-+..++..|.+++...+ +...+.+.|+++.++. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4567788999999997654 4556788899999999 9999999999999999999999999999999999999999999


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCCh
Q 039940          285 LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCI  364 (449)
Q Consensus       285 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~  364 (449)
                      |+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|++++.+ +++.++.+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643788999999999999999988888899999999999999999999999999999999987 67889999999999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 039940          365 KPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG-NNGIREKAVTILET  443 (449)
Q Consensus       365 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~i~~~a~~~i~~  443 (449)
                      +.|+.++.++++++++.++.+|.+++...+.......  ...+.+...+++     .++.++.++ +.++++++..++++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987543211000  011235555544     367777666 79999999999999


Q ss_pred             hcCCC
Q 039940          444 YWLKG  448 (449)
Q Consensus       444 ~~~~~  448 (449)
                      ||+++
T Consensus       285 ~f~~~  289 (296)
T 1xqr_A          285 CFSSP  289 (296)
T ss_dssp             HCC--
T ss_pred             HcCCC
Confidence            99754

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.5e-26  Score=217.46  Aligned_cols=417  Identities=14%  Similarity=0.123  Sum_probs=313.2

Q ss_pred             cccCCCCCCCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHH
Q 039940            5 LFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQF   84 (449)
Q Consensus         5 ~~~p~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~   84 (449)
                      .++|..|..-++.+..-|..+.+.+.+.+........++..+.+.+|.  ....+..+..+.++.|.+++++   ++++.
T Consensus       238 ~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~  312 (778)
T 3opb_A          238 ELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQI  312 (778)
T ss_dssp             HHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHH
T ss_pred             HHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHH
Confidence            457777777777888888889998888665444444455555555565  3555666678889999999975   47889


Q ss_pred             HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-hcCCHHHHHHHHcccc
Q 039940           85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL-HEEALIPLLAQLNEHA  163 (449)
Q Consensus        85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~  163 (449)
                      .|+-+|+.+..........+.  ...+.+.+++.+++.+-+..|++.|+.++.+ +..+..+. +.+++..|+.++....
T Consensus       313 lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~  389 (778)
T 3opb_A          313 YSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQK  389 (778)
T ss_dssp             HHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCC
Confidence            999999998863322111111  2567788888877766699999999999665 45555554 5566999999995457


Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCCh---------------------------------------hhhhchHHHHHHhhcCC
Q 039940          164 RLSMLRIGTWTLSNLCKGKPQPPF---------------------------------------DQVRPVLPALAQLIHLD  204 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~~~~~---------------------------------------~~~~~~l~~l~~ll~~~  204 (449)
                      +..+...++.++.|++.+.+....                                       ....|++|.|+.++.++
T Consensus       390 d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~  469 (778)
T 3opb_A          390 MTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL  469 (778)
T ss_dssp             CTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS
T ss_pred             CchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC
Confidence            788999999999999987642100                                       11267899999999999


Q ss_pred             CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc---chhhHHHHHHHhhcCChhhHHHHHh----cCC
Q 039940          205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS---VLIPALRTVGNIVTGDDFQTQCVIN----HGA  277 (449)
Q Consensus       205 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~----~~~  277 (449)
                      ++.++..++++|.+++.. ++....+++.|+++.|+.++.+....   .+..|+.+|++++...+...  ++.    .++
T Consensus       470 s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~a  546 (778)
T 3opb_A          470 SPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNA  546 (778)
T ss_dssp             CHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTH
T ss_pred             CHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccc
Confidence            999999999999999966 44566688999999999999887544   78999999999985433221  121    389


Q ss_pred             HHHHHHHhcc-CCch------------hHHHHHHHHHHHHhcCC----HHHHHHHHHC-CChHHHHHHhhcCchhHHHHH
Q 039940          278 VPYLLALLIN-NHKK------------SIKKESCWTVSNITAGN----RKQIQAVIDA-GLIVPLVNLLQDAEFDIKKEA  339 (449)
Q Consensus       278 l~~L~~ll~~-~~~~------------~v~~~a~~~l~nl~~~~----~~~~~~l~~~-~~~~~L~~ll~~~~~~v~~~a  339 (449)
                      +++|+.+|.. +...            .-+.+|+.+|.|++..+    ++.+..+++. |+++.|.+++.+++..+|+.|
T Consensus       547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA  626 (778)
T 3opb_A          547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST  626 (778)
T ss_dssp             HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence            9999999983 2111            12779999999999865    3446678885 999999999999999999999


Q ss_pred             HHHHHHhhccCCHHHH-HHHHHc------CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHH
Q 039940          340 AWAISNATKAGTQEQI-KYLVRE------GCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARL  412 (449)
Q Consensus       340 ~~aL~~l~~~~~~~~~-~~l~~~------~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  412 (449)
                      +++++|++..  ++.+ +.+.+.      +.++.|+.+++++|.+++..|.++|.++....+...            ...
T Consensus       627 ~elI~NL~~~--~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia------------~~l  692 (778)
T 3opb_A          627 LELISNMMSH--PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA------------KEL  692 (778)
T ss_dssp             HHHHHHHHTS--GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH------------HHH
T ss_pred             HHHHHHHhCC--cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH------------HHH
Confidence            9999999984  4443 233321      237889999999999999999999999976554321            334


Q ss_pred             HHhcchHHHHHHHhcC--CCHHHHHHHHHHHHHhcC
Q 039940          413 VEGAEGFKKIEDLKSH--GNNGIREKAVTILETYWL  446 (449)
Q Consensus       413 ~~~~~~~~~l~~l~~~--~~~~i~~~a~~~i~~~~~  446 (449)
                      ++..+|++.+..+..+  +++++++++..++.++++
T Consensus       693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            4444789988888766  899999999999999885

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.4e-25  Score=213.55  Aligned_cols=389  Identities=13%  Similarity=0.099  Sum_probs=299.2

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      -..++.|.+.+++  ..++..|+-.|+++....+.... .+  ....+.+.+.+.+++ .+.+..|++.|..++. .++.
T Consensus       295 ~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~V  367 (778)
T 3opb_A          295 ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASV  367 (778)
T ss_dssp             HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHH
T ss_pred             HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHH
Confidence            3556777887765  47888899999998766532211 11  125677888888877 5669999999999998 6788


Q ss_pred             hHHHHhC-CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCc-------------------------------------
Q 039940          101 TKVLIDH-GAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPG-------------------------------------  141 (449)
Q Consensus       101 ~~~~~~~-~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~-------------------------------------  141 (449)
                      +..+.+. ++++.|++++.+ .+..+...++.+|.|++...+.                                     
T Consensus       368 Ke~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~  447 (778)
T 3opb_A          368 KIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL  447 (778)
T ss_dssp             HHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence            8888776 669999999985 7788999999999999864331                                     


Q ss_pred             -hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHH---HHHHHHHHHH
Q 039940          142 -CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEE---VLRNVCWTLS  217 (449)
Q Consensus       142 -~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---~~~~~~~~l~  217 (449)
                       .+..+.+.|+++.|+.++ .+.++.+++.++|+|.+++.+...+......|+++.|+.++.+....   .+..++.+|.
T Consensus       448 ~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA  526 (778)
T 3opb_A          448 FNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT  526 (778)
T ss_dssp             HHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence             245567889999999998 77899999999999999998866666666789999999999877544   8999999999


Q ss_pred             HcccCChhHHHHHHH----hCcHHHHHHhhCC-CCCc------------c-hhhHHHHHHHhhcCCh----hhHHHHHhc
Q 039940          218 NLSDGTNDKIQAVIE----AGVCGPLVELLGH-PSPS------------V-LIPALRTVGNIVTGDD----FQTQCVINH  275 (449)
Q Consensus       218 ~l~~~~~~~~~~~~~----~~~~~~L~~ll~~-~~~~------------v-~~~a~~~l~~l~~~~~----~~~~~~~~~  275 (449)
                      ++....+...  ++.    .|++++|+.+|.. +...            . +..|+.+|.|++..++    +.++.++..
T Consensus       527 rLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~  604 (778)
T 3opb_A          527 RMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST  604 (778)
T ss_dssp             HHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred             HHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence            9985433221  121    3889999999983 2211            1 6689999999999862    345667774


Q ss_pred             -CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHC------CChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          276 -GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI-QAVIDA------GLIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       276 -~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~------~~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                       |+++.|..+|.++ +..+|+.|+++++|++.. ++.+ +.+.+.      +.++.|+.++..++.++|..|+|+|++++
T Consensus       605 ~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          605 KVYWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence             8999999999998 889999999999999874 3433 233322      23789999999999999999999999997


Q ss_pred             ccCCHHHHHHHHHc-CChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHH
Q 039940          348 KAGTQEQIKYLVRE-GCIKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED  424 (449)
Q Consensus       348 ~~~~~~~~~~l~~~-~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  424 (449)
                      .. ++..++.+++. ++++.++.++++  ++++++..++.+++|++.+.....       ....+.........++.+.+
T Consensus       683 s~-~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~  754 (778)
T 3opb_A          683 TT-IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG-------TNEVYPLLQENQKLKDALNM  754 (778)
T ss_dssp             HH-CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT-------TTSCCHHHHSCHHHHHHHHH
T ss_pred             CC-ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC-------ChHHHHHHhcChHHHHHHHH
Confidence            65 56777888876 799999999998  899999999999999998553322       12234555556667777877


Q ss_pred             HhcCC
Q 039940          425 LKSHG  429 (449)
Q Consensus       425 l~~~~  429 (449)
                      +...+
T Consensus       755 ~lk~~  759 (778)
T 3opb_A          755 SLKRG  759 (778)
T ss_dssp             HHSSS
T ss_pred             HHhCC
Confidence            75444

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=2.8e-24  Score=181.86  Aligned_cols=199  Identities=36%  Similarity=0.545  Sum_probs=186.6

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  270 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  270 (449)
                      .+..+.+..++.+++++++..++++|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            57788999999999999999999999999988888888899999999999999999999999999999999988888888


Q ss_pred             HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                      .+.+.|+++.|+.+|+++ ++.++..|+|+|+|++.+++.....+.+.|+++.|++++.++++.++..|+++|.+++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            999999999999999999 999999999999999998888888899999999999999999999999999999999986 


Q ss_pred             CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940          351 TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK  391 (449)
Q Consensus       351 ~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~  391 (449)
                      +++....+.+.|+++.|..++++++++++..|+++|.++..
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            57888889999999999999999999999999999998853

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=2.7e-23  Score=175.83  Aligned_cols=199  Identities=36%  Similarity=0.510  Sum_probs=180.2

Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK  226 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  226 (449)
                      ..+..+.+..++ ++.+++++..++++|.+++...+ ........++++.++.++.++++.++..++++|++++..++..
T Consensus        10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            456777888888 78899999999999999997653 2233444789999999999999999999999999999888888


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          227 IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       227 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      ...+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.++..|+++|+|++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            88899999999999999999999999999999999998888888889999999999999998 99999999999999999


Q ss_pred             CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940          307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK  348 (449)
Q Consensus       307 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~  348 (449)
                      ++++....+.+.|+++.|++++.++++++++.|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            888888899999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.91  E-value=2.5e-23  Score=182.46  Aligned_cols=227  Identities=14%  Similarity=0.177  Sum_probs=187.8

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh
Q 039940          164 RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQ-LIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL  242 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  242 (449)
                      +.+-+..|+..|.+++....+.......|++|.++. +|.++++.++..++|+|++++.+++...+.+++.|+++.|+.+
T Consensus        53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            445677888888888887543333444789999999 9999999999999999999999998888889999999999999


Q ss_pred             hCC-CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Q 039940          243 LGH-PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI  321 (449)
Q Consensus       243 l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~  321 (449)
                      |.+ ++..++..|+|+|++++.+++...+.+.+.|+++.|+.+|+++ +..++..|+|+|++++.++++.+..+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence            985 4778999999999999999888888889999999999999998 99999999999999998888889999999999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHc--CC---hHHHHhhcc-CC-CHHHHHHHHHHHHHHHHh
Q 039940          322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVRE--GC---IKPLCDLLL-CA-DPEIVTVCLKGLENILKV  392 (449)
Q Consensus       322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~---~~~L~~ll~-~~-~~~~~~~~~~~l~~l~~~  392 (449)
                      +.|+.+|.++++.++..|+++|.+++.. .+.........  .+   ++.-..-++ .+ ..++++.+..++.++|..
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~  288 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTD-FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS  288 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTT-CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhC-ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999987 33333322211  11   211222333 22 467888899999988854

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=2e-21  Score=162.74  Aligned_cols=197  Identities=21%  Similarity=0.158  Sum_probs=170.4

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940           66 IVPRFVEFLLREDYP--RLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        66 ~i~~L~~ll~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      .+|.++++|.+++ +  +++..|++.+.+++..+++.+..+.+.|+||.|+++|.++++++++.|+|+|.|++.++++.+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999988 6  889999999999998789999999999999999999999999999999999999999888899


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------CCCHH
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH----------------LDDEE  207 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~  207 (449)
                      ..+.+.|++++|+++|..+.+.++++.++.+|+||+.....+. ....+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999999556789999999999999998764433 334567898887653                13679


Q ss_pred             HHHHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcC
Q 039940          208 VLRNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTG  264 (449)
Q Consensus       208 ~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~  264 (449)
                      ++.++..+|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.++.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998877777777765 678999999875      2556889999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=4e-21  Score=160.86  Aligned_cols=197  Identities=19%  Similarity=0.158  Sum_probs=165.5

Q ss_pred             hcHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           22 EILPAMVAGVWSDDN--SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      -.+|.++++|+++++  +++..|++.|.+++.++ .+.+..+++.|++|.|+++|++++ ++++..|+++|.|++.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            358999999999988  89999999999998654 567888999999999999999988 89999999999999998899


Q ss_pred             hhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---------------ccc
Q 039940          100 NTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---------------EHA  163 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~  163 (449)
                      ++..+.+.|+||.|+++|. +++.+++++++.+|+|++... ..+..+.+ +++++|+.++.               ...
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999997 578999999999999998754 45666655 46888887552               013


Q ss_pred             cHHHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHhhcC------CCHHHHHHHHHHHHHcccC
Q 039940          164 RLSMLRIGTWTLSNLCKGK-PQPPFDQ-VRPVLPALAQLIHL------DDEEVLRNVCWTLSNLSDG  222 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~-~~~~~~~-~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~  222 (449)
                      ++++++++.++|.||+..+ ..+.... ..|+++.|+.+++.      .+.+.+++++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6799999999999999865 2333232 36788999999874      2678899999999999864

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.83  E-value=3.3e-19  Score=182.30  Aligned_cols=360  Identities=13%  Similarity=0.122  Sum_probs=263.1

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      .+...-+.+++.+.++++.+|..++.++..++.......+     .+.++.|+..+.+++ ..++..++.+|+.++...+
T Consensus        87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~  160 (852)
T 4fdd_A           87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSA  160 (852)
T ss_dssp             HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhH
Confidence            3445667778888888999999999999999876422222     456899999999988 8999999999999997433


Q ss_pred             hhhHHHH----hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940           99 VNTKVLI----DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT  174 (449)
Q Consensus        99 ~~~~~~~----~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  174 (449)
                      .....-.    -..+++.+++.+.+++..+|..|++++.++....+...... -...++.++..+ .+++++++..++++
T Consensus       161 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~  238 (852)
T 4fdd_A          161 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRA  238 (852)
T ss_dssp             THHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHH
T ss_pred             HHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHH
Confidence            3221100    11356777788888999999999999998876543211000 123566677766 67889999999999


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh---CcHHHHHHhh--------
Q 039940          175 LSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA---GVCGPLVELL--------  243 (449)
Q Consensus       175 l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~ll--------  243 (449)
                      +..++...+........++++.+...+.+.++.++..++.++..++...... . ....   .+++.++..+        
T Consensus       239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e~d~~  316 (852)
T 4fdd_A          239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSDIDII  316 (852)
T ss_dssp             HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcHhHHH
Confidence            9999987643333344678889999999999999999999999998654211 1 1221   4566676666        


Q ss_pred             ---CC-----------CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 039940          244 ---GH-----------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR  309 (449)
Q Consensus       244 ---~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~  309 (449)
                         .+           .++.++..|..+++.++...++.   ++ ..+++.+...+.++ ++.+|..|++++++++.+..
T Consensus       317 ~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~  391 (852)
T 4fdd_A          317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCM  391 (852)
T ss_dssp             HHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTH
T ss_pred             HhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcch
Confidence               33           34567888999999988653321   11 23678888888888 99999999999999998776


Q ss_pred             HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940          310 KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI  389 (449)
Q Consensus       310 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l  389 (449)
                      +...... .++++.++..+.++++.||..|++++++++.......... .-.++++.|+..+.+.++.++..++++|.++
T Consensus       392 ~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l  469 (852)
T 4fdd_A          392 QGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATL  469 (852)
T ss_dssp             HHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            6444333 3678999999999999999999999999987421100000 1123678888888888999999999999999


Q ss_pred             HHhhhh
Q 039940          390 LKVGEA  395 (449)
Q Consensus       390 ~~~~~~  395 (449)
                      ++....
T Consensus       470 ~~~~~~  475 (852)
T 4fdd_A          470 EEEACT  475 (852)
T ss_dssp             HHHHGG
T ss_pred             HHHhhH
Confidence            977654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.82  E-value=1.5e-18  Score=170.43  Aligned_cols=344  Identities=11%  Similarity=0.096  Sum_probs=229.5

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ...+|.+.+++.++++.+|..|+..|..++...+   . ......++|.+..++++++ +.++..|+.+|..++...+..
T Consensus       163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~---~-~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~  237 (588)
T 1b3u_A          163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---L-DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---H-HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---H-HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH
Confidence            3556777788888999999999999999976431   1 1234567889999999888 899999999999988633221


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                         .....++|.+..++.++++.+|..++.+|+.++...+.   .......++.++..+ ++.++.++..+++++..++.
T Consensus       238 ---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~  310 (588)
T 1b3u_A          238 ---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             ---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHH
Confidence               12234788999999999999999999999999753211   112334677788888 77889999999999999998


Q ss_pred             CCCCCCh--hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          181 GKPQPPF--DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       181 ~~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ..+....  .....++|.+..++.++++.++..+++++..++..-...   .....+++.+..++++++++++..++.++
T Consensus       311 ~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l  387 (588)
T 1b3u_A          311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNL  387 (588)
T ss_dssp             TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTC
T ss_pred             HhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            7543221  345778899999999999999999999999887532211   11235778888888888888998888888


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKK  337 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  337 (449)
                      +.++......   .....+++.+..++.+. +..+|..++.+++.++.. .++    .....+++.+...+.+++..+|.
T Consensus       388 ~~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~  459 (588)
T 1b3u_A          388 DCVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIRE  459 (588)
T ss_dssp             HHHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHH
T ss_pred             HHHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHH
Confidence            8776532211   11123566666666666 677777777777766531 000    00112455566666666666666


Q ss_pred             HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940          338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK  391 (449)
Q Consensus       338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~  391 (449)
                      .|+.++..++...+++.    ....+++.|..+++++++.+|..+++++..+..
T Consensus       460 ~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~  509 (588)
T 1b3u_A          460 AATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             HHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            66666666655322221    112244444444444455555555555554443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.82  E-value=1.4e-18  Score=170.61  Aligned_cols=383  Identities=13%  Similarity=0.132  Sum_probs=285.7

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ...+|.+.++++++++.++..|+.+|..++...  +  .......++|.+..++++++ ..++..|+.+|+.++...+. 
T Consensus       202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~-  275 (588)
T 1b3u_A          202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL--P--QEDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP-  275 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--C--HHHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH-
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc-
Confidence            356788888889999999999999999887643  1  11233457889999998888 79999999999999862211 


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch-hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC-RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                        ......+++.+..++.++++.+|..++++|+.++...+.. +........++.+...+ ++.++.++..+++++..++
T Consensus       276 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          276 --EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             --HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGH
T ss_pred             --ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence              1223356899999999999999999999999998654321 11112234566677777 7788999999999999887


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                      .....  ......++|.+..++.+++++++..++.++..+.......   .....+++.+..++.+.++.++..++.+++
T Consensus       353 ~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~  427 (588)
T 1b3u_A          353 PILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMP  427 (588)
T ss_dssp             HHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            54211  1223567889999999889999999999888877543211   122357888889999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940          260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE  338 (449)
Q Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~  338 (449)
                      .++......   .....+++.+..++.++ +..+|..|+.+++.++.. .++    .....++|.+..++.+.+..+|..
T Consensus       428 ~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~  499 (588)
T 1b3u_A          428 LLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMT  499 (588)
T ss_dssp             HHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHH
T ss_pred             HHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHH
Confidence            987531111   11224678888999888 899999999999999862 222    122358888988888889999999


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcch
Q 039940          339 AAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG  418 (449)
Q Consensus       339 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (449)
                      ++++++.++...+.+    .....+++.|..++++++++++..+++++..+.......            +.    ....
T Consensus       500 a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------------~~----~~~~  559 (588)
T 1b3u_A          500 TLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS------------TL----QSEV  559 (588)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH------------HH----HHHH
T ss_pred             HHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh------------hh----HHHH
Confidence            999999998742222    123458899999999999999999999999998654321            11    1334


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          419 FKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       419 ~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      +..|..+..+++++++..|...+..+-
T Consensus       560 ~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          560 KPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            677788889999999999999988653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.80  E-value=1.4e-16  Score=149.23  Aligned_cols=370  Identities=16%  Similarity=0.155  Sum_probs=274.5

Q ss_pred             hhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCC
Q 039940           20 KLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYPRLQFEAAWVLTNIASGT   97 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~   97 (449)
                      ..+.++.|...+.+. -.+-|+.|+..|..++..    .. ..+..++++.|+..|+.. ++.++...++.+|.++...+
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~----y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~   93 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK----YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND   93 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT----TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH----hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence            468899999999864 588999999999999532    22 344567799999999865 34788899999998877643


Q ss_pred             hh-----------------hhHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc-hhhhHhh-cCCHHHHHH
Q 039940           98 SV-----------------NTKVLI-DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG-CRNLVLH-EEALIPLLA  157 (449)
Q Consensus        98 ~~-----------------~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~l~~  157 (449)
                      ++                 ..+.+. +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+.. .++++.|+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~  173 (651)
T 3grl_A           94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD  173 (651)
T ss_dssp             --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred             CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence            32                 122333 457899999999999999999999999999988876 6777774 489999999


Q ss_pred             HHcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCC----HHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940          158 QLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQLIHLDD----EEVLRNVCWTLSNLSDGTNDKIQAVIE  232 (449)
Q Consensus       158 ~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~  232 (449)
                      +| ++..+.++..++..|.+++.+.+..+ ....+++++.|+.++..+.    ..+...++.++.|+.+.++.+...+.+
T Consensus       174 lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE  252 (651)
T 3grl_A          174 LL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE  252 (651)
T ss_dssp             GG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99 77778899999999999999985443 3444799999999998654    478899999999999999988888999


Q ss_pred             hCcHHHHHHhhCCCCCc------chhh---HHHHHHHhhcCC------hhhHHHHHhcCCHHHHHHHhccCC-chhHHHH
Q 039940          233 AGVCGPLVELLGHPSPS------VLIP---ALRTVGNIVTGD------DFQTQCVINHGAVPYLLALLINNH-KKSIKKE  296 (449)
Q Consensus       233 ~~~~~~L~~ll~~~~~~------v~~~---a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~  296 (449)
                      .++++.|..++..++..      ...+   ++.++.-++..+      ......+.+.|+++.++.++.... ...++.+
T Consensus       253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~  332 (651)
T 3grl_A          253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE  332 (651)
T ss_dssp             TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence            99999999999864322      1222   455555555542      234556779999999999987542 4679999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCC---------ChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHc----C
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAG---------LIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVRE----G  362 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~---------~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~----~  362 (449)
                      |..+++.++++++.....+.+..         ++..|+.++.+. ..++|..|+.++...+.. +.+....+...    .
T Consensus       333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~-N~~~Q~~i~~~llp~~  411 (651)
T 3grl_A          333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK-NQKGQGEIVSTLLPST  411 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC-CHHHHHHHHHhcCCcc
Confidence            99999999999998888877643         233344445443 688999999999999987 44444444432    1


Q ss_pred             ------Ch---HHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          363 ------CI---KPLCDLLLCADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       363 ------~~---~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                            .+   ..|..-+-+.|+.-.-.|.-++..++...+..
T Consensus       412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~  454 (651)
T 3grl_A          412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ  454 (651)
T ss_dssp             CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence                  01   12334444556644344666677777665543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=8.1e-18  Score=172.05  Aligned_cols=385  Identities=14%  Similarity=0.117  Sum_probs=269.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChH
Q 039940           32 WSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVP  111 (449)
Q Consensus        32 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  111 (449)
                      .+.++.+|..|+..|.+..... -.....-....+-+.+++.+.+++ +.++..++.+++.++......    .-.+.++
T Consensus        58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll~  131 (852)
T 4fdd_A           58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLLP  131 (852)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHHH
Confidence            4567888888888888887532 111111123344566777888877 899999999999998732110    1136789


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh----hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940          112 IFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL----HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF  187 (449)
Q Consensus       112 ~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  187 (449)
                      .|+..+.+++..+++.++.+|+.++...+.....-.    -...++.++..+ +++++.++..+++++.++....+....
T Consensus       132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~  210 (852)
T 4fdd_A          132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM  210 (852)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence            999999999999999999999999865443211000    112345555555 577899999999999988765432222


Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940          188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  267 (449)
                      .....+++.+..++.+++++++..+++++..++...+......++ ++++.+...+.+.++.++..|+.++..++.... 
T Consensus       211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-  288 (852)
T 4fdd_A          211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-  288 (852)
T ss_dssp             TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence            233578888999998999999999999999999876654333333 578888899999999999999999999886531 


Q ss_pred             hHHHHHh---cCCHHHHHHHh-----------cc--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940          268 QTQCVIN---HGAVPYLLALL-----------IN--N--------HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP  323 (449)
Q Consensus       268 ~~~~~~~---~~~l~~L~~ll-----------~~--~--------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  323 (449)
                      .. ....   ..+++.++..+           .+  .        .+..+|+.|+.++..++...++   .++. .+++.
T Consensus       289 ~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~  363 (852)
T 4fdd_A          289 CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL  363 (852)
T ss_dssp             HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence            11 1221   13456666665           22  0        1345789999999998763221   1121 36778


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 039940          324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTI  403 (449)
Q Consensus       324 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  403 (449)
                      +...+.+.++.+|..|++++++++.... +...... .++++.+..+++++++.++..+++++.++.........     
T Consensus       364 l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-----  436 (852)
T 4fdd_A          364 LKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-----  436 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence            8888888899999999999999998743 3332222 34788999999999999999999999999986543211     


Q ss_pred             CcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          404 GDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                         ..+..     +.++.+.....++++.++..|...+.++.
T Consensus       437 ---~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          437 ---DTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLE  470 (852)
T ss_dssp             ---TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             ---HHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence               01122     23455666666778999999988887654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.79  E-value=6.5e-16  Score=144.79  Aligned_cols=413  Identities=14%  Similarity=0.136  Sum_probs=294.1

Q ss_pred             hhcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCC----------------cHHHH-HHcCCHHHHHHhhcCCCCHH
Q 039940           21 LEILPAMVAGVWS--DDNSMQLEAATQFRRLLSIERSL----------------PIDEV-IQAGIVPRFVEFLLREDYPR   81 (449)
Q Consensus        21 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~-~~~~~i~~L~~ll~~~~~~~   81 (449)
                      .++++.++..|+.  +|.+....++..|.++.+....+                ..+.+ .+.+.++.|+.+|++.+ -.
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~  137 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FH  137 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HH
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HH
Confidence            5679999999986  57888888999998887654221                11233 34678999999999988 79


Q ss_pred             HHHHHHHHHHHhcCCChh-hhHHHHhC-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHH
Q 039940           82 LQFEAAWVLTNIASGTSV-NTKVLIDH-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL  159 (449)
Q Consensus        82 ~~~~a~~~L~~l~~~~~~-~~~~~~~~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  159 (449)
                      ++..++.+|..++...++ ..+.+... ++++.|+.+|++..+.+|..++..|.+++.++++.++.+.-.|+++.+++.+
T Consensus       138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii  217 (651)
T 3grl_A          138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII  217 (651)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence            999999999999987766 66777754 9999999999999999999999999999999999999999999999999999


Q ss_pred             cccc---cHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCH------HHHHH---HHHHHHHcccCC---
Q 039940          160 NEHA---RLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDE------EVLRN---VCWTLSNLSDGT---  223 (449)
Q Consensus       160 ~~~~---~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~------~~~~~---~~~~l~~l~~~~---  223 (449)
                      ....   ...+...++.++.+|.+..+ +.......++++.|..++..+++      ....+   ++.++.-+....   
T Consensus       218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~  297 (651)
T 3grl_A          218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP  297 (651)
T ss_dssp             HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred             HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            5432   34788999999999999974 33444447889999999875432      12333   556666666542   


Q ss_pred             ---hhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChhhHHHHHhcC---------CHHHHHHHhccCC
Q 039940          224 ---NDKIQAVIEAGVCGPLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCVINHG---------AVPYLLALLINNH  289 (449)
Q Consensus       224 ---~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~  289 (449)
                         ..+...+.+.|+++.+++++..+  ...++..|+.+++.+.++++...+.+.+..         ++..|+.++.+..
T Consensus       298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~  377 (651)
T 3grl_A          298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ  377 (651)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence               23456788899999999998875  456889999999999999888777665432         4444555566654


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHC----C------Ch---HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940          290 KKSIKKESCWTVSNITAGNRKQIQAVIDA----G------LI---VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK  356 (449)
Q Consensus       290 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~----~------~~---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  356 (449)
                      ...+|..|+.++..+..++++....+...    .      .+   ..+..-+.+.|+----.|+.++.++... +++...
T Consensus       378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~  456 (651)
T 3grl_A          378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKE  456 (651)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHH
Confidence            68899999999999999888766555542    1      11   1344555556665556688888898886 455444


Q ss_pred             HHHH--------cC---ChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHH
Q 039940          357 YLVR--------EG---CIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED  424 (449)
Q Consensus       357 ~l~~--------~~---~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  424 (449)
                      .+.+        +.   .++.+...+.. .++.++..-+..|...+..++.            ....++.+...++.|.+
T Consensus       457 ~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~~  524 (651)
T 3grl_A          457 QLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLTG  524 (651)
T ss_dssp             HHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHHH
T ss_pred             HHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHHH
Confidence            3333        11   14445555543 4566666666666655544433            24566666656777765


Q ss_pred             HhcC-CC---HHHHHHHHHHHHHhcCC
Q 039940          425 LKSH-GN---NGIREKAVTILETYWLK  447 (449)
Q Consensus       425 l~~~-~~---~~i~~~a~~~i~~~~~~  447 (449)
                      ...+ ..   .-++-.+.-++=-||+.
T Consensus       525 ~i~~~~~~~~~lvqGL~a~LLGi~yef  551 (651)
T 3grl_A          525 QIAENLGEEEQLVQGLCALLLGISIYF  551 (651)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCcchHHHHHHHHHHHHHHhhc
Confidence            5432 22   33666666666555543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.75  E-value=2.3e-15  Score=146.86  Aligned_cols=341  Identities=16%  Similarity=0.178  Sum_probs=243.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      .++.+++++++++..++..+...+..++... .   +..  .-+++.+.+-+++++ +.++..|+.+|+++..  ++...
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~---e~~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~  120 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-P---DMA--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE  120 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-H---HHH--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-c---hHH--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence            4556677777777777777766676665421 1   111  234677777788888 8999999999998863  44444


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      .+     ++.+.+++.++++.+|..|++++.+++...|+.   +...+.++.+..++ .+.++.++..|++++..++...
T Consensus       121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence            33     578999999999999999999999998876653   22345677888888 7889999999999999999887


Q ss_pred             CCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 039940          183 PQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI  261 (449)
Q Consensus       183 ~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l  261 (449)
                      +.. ........++.++..+...++..+..++.++..++..++....     .+++.+..++++.++.++.+|++++..+
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            543 3334456677888888788899999999999998866543322     5678888899999999999999999998


Q ss_pred             hcC---ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH----------------------HHHHHH
Q 039940          262 VTG---DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK----------------------QIQAVI  316 (449)
Q Consensus       262 ~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~----------------------~~~~l~  316 (449)
                      ...   +++..+.+. ..+.+.|+.++. + ++.+|..|+.+++.++...++                      ....+.
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~  343 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI  343 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence            742   233333322 345566666554 5 778888888888877641110                      011111


Q ss_pred             ---HC----CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940          317 ---DA----GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI  389 (449)
Q Consensus       317 ---~~----~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l  389 (449)
                         +.    .+++.|...+.+.+.+++..++++++.++... +....     .+++.|++++...+..++..++.++..+
T Consensus       344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence               11    14555666667778999999999999999874 32222     2578888888888888888888888888


Q ss_pred             HHhhhh
Q 039940          390 LKVGEA  395 (449)
Q Consensus       390 ~~~~~~  395 (449)
                      ++..+.
T Consensus       418 i~~~p~  423 (591)
T 2vgl_B          418 FRKYPN  423 (591)
T ss_dssp             HHHSCS
T ss_pred             HHHCcc
Confidence            776544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.73  E-value=7.7e-16  Score=135.96  Aligned_cols=259  Identities=14%  Similarity=0.124  Sum_probs=202.9

Q ss_pred             HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC
Q 039940           61 VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP  140 (449)
Q Consensus        61 ~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  140 (449)
                      ....+.++.|+..|.+++ +.++..|+++|+++..  +         +.++.|..++.++++.+|..++++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345678999999999988 8999999999999873  2         357899999999999999999999999853322


Q ss_pred             chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940          141 GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       141 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  220 (449)
                      ...      ..++.+...+.+++++.++..++++|.++....+    ......++.+..++.++++.++..++++++++.
T Consensus        87 ~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            111      1223333333477899999999999999985431    123467899999999999999999999999875


Q ss_pred             cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHH
Q 039940          221 DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT  300 (449)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  300 (449)
                      .           .+.++.|+.++.++++.++..++++|+.+....+         ..++.|..++.++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2578999999999999999999999999854322         2567888999988 99999999999


Q ss_pred             HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHH
Q 039940          301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIV  379 (449)
Q Consensus       301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~  379 (449)
                      |+++.  +         ...++.|+..+.++  +++..|+.+|+.+..   +         ..++.|..++.+ .+++++
T Consensus       216 L~~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~  270 (280)
T 1oyz_A          216 LSYRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII  270 (280)
T ss_dssp             HHHTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred             HHHhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence            99985  2         24788888888764  489999999999854   1         367888888864 567777


Q ss_pred             HHHHHHHH
Q 039940          380 TVCLKGLE  387 (449)
Q Consensus       380 ~~~~~~l~  387 (449)
                      ..++..+.
T Consensus       271 ~~~~~~l~  278 (280)
T 1oyz_A          271 TSAIDKLK  278 (280)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77777664

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.72  E-value=5.4e-16  Score=151.26  Aligned_cols=338  Identities=16%  Similarity=0.155  Sum_probs=233.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      .++.+.+.|+++++.++..|+++|.++..   .+....     +++.+.+++.+++ +.++..|+.++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~~-----l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITEY-----LCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHHH-----HHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHHH-----HHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            45666777889999999999888877742   232332     3678999999988 99999999999999986665432


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                         +.++++.+..+|.++++.++..|+++|+.++..++.........+.+..+++.+ .+.++-.+...+.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987764311111223466777777 5567777777777776665332


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC---ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940          183 PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG---TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG  259 (449)
Q Consensus       183 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~  259 (449)
                          ......+++.+..++++.++.++..+++++..+...   +++..+.+.. .+.+.|+.++. +++.++..|+.+++
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHH
Confidence                233467888999999999999999999999998742   2333333332 45566666654 67778888888888


Q ss_pred             HhhcCChhh------------------HHHHH-------hc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940          260 NIVTGDDFQ------------------TQCVI-------NH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK  310 (449)
Q Consensus       260 ~l~~~~~~~------------------~~~~~-------~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  310 (449)
                      .++...+..                  +....       +.    .+++.|...+.+. +.++|..+++++++++...+.
T Consensus       308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence            776421110                  01110       11    2455666777777 899999999999999987654


Q ss_pred             HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHH
Q 039940          311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENI  389 (449)
Q Consensus       311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l  389 (449)
                      ...     .+++.|++++......++..+..++.++.... ++.     ...++..|...+++ .+++++..++|++..+
T Consensus       387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~-p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey  455 (591)
T 2vgl_B          387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY-PNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEY  455 (591)
T ss_dssp             HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS-CSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred             HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHC-cch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence            332     35678888888777778877777777776542 111     13355666666653 4566666666666655


Q ss_pred             HH
Q 039940          390 LK  391 (449)
Q Consensus       390 ~~  391 (449)
                      ..
T Consensus       456 ~~  457 (591)
T 2vgl_B          456 AE  457 (591)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.71  E-value=1e-15  Score=135.16  Aligned_cols=256  Identities=14%  Similarity=0.088  Sum_probs=200.3

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      ....++.+++.|.++++.++..|++.|.++..            .+.++.|+.++++++ +.++..|+++|+.+... +.
T Consensus        21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~   86 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KK   86 (280)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TT
T ss_pred             HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cc
Confidence            34579999999999999999999999998841            235788999999998 89999999999998753 22


Q ss_pred             hhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          100 NTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      ...     .+++.|.+ +++++++.+|..++++|+++....+..     ....++.+...+ +++++.++..+++++.++
T Consensus        87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC
T ss_pred             cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhc
Confidence            111     12344442 457789999999999999997544322     123567778878 788999999999999987


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ...          ..++.|..++.++++.++..++++|+.+....+         ..++.+..++.++++.++..|+++|
T Consensus       156 ~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          156 NDK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            542          478999999999999999999999999854332         3567888999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKK  337 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~  337 (449)
                      +++..           ...++.|...+.++ +  ++..|+++|+.+..  +         ..++.|..++.+. ++++..
T Consensus       217 ~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHH
Confidence            98862           34788899999865 4  89999999998843  1         4788899998754 677887


Q ss_pred             HHHHHHH
Q 039940          338 EAAWAIS  344 (449)
Q Consensus       338 ~a~~aL~  344 (449)
                      .+..++.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7777664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.67  E-value=4.9e-15  Score=152.06  Aligned_cols=358  Identities=14%  Similarity=0.201  Sum_probs=246.8

Q ss_pred             hhcHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 039940           21 LEILPAMVAGVWS-------DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI   93 (449)
Q Consensus        21 ~~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l   93 (449)
                      ...+|.++..+..       +++.++..|...|..++...+....     ..+++.+.+.+.+++ ...+..|+.+++.+
T Consensus       323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i  396 (861)
T 2bpt_A          323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSI  396 (861)
T ss_dssp             HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHH
Confidence            4567888888874       2357888899999888754321111     234677777888888 79999999999999


Q ss_pred             cCCCh-hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch---hhhHhhcCCHHHHHHHHcccccHHHHH
Q 039940           94 ASGTS-VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC---RNLVLHEEALIPLLAQLNEHARLSMLR  169 (449)
Q Consensus        94 ~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~  169 (449)
                      +.+.. +....... .+++.++..+.++++.+|..++|+++.++..-+..   ...  -...++.++..+ ++. +.++.
T Consensus       397 ~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~  471 (861)
T 2bpt_A          397 MDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVAT  471 (861)
T ss_dssp             SSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHH
T ss_pred             HcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHH
Confidence            97543 33322332 47899999999999999999999999998532110   111  123566777777 443 88999


Q ss_pred             HHHHHHHHhhcCCC----CCChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940          170 IGTWTLSNLCKGKP----QPPFDQVRPVLPALAQLIHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL  243 (449)
Q Consensus       170 ~a~~~l~~l~~~~~----~~~~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll  243 (449)
                      .+++++.+++....    .........+++.+...+.+.+  +.++..++.++..++...+......+. .+++.++..+
T Consensus       472 ~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l  550 (861)
T 2bpt_A          472 NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKL  550 (861)
T ss_dssp             HHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHH
Confidence            99999999987532    2222345778888889888543  789999999999988655433222232 3556666555


Q ss_pred             CCC---------------CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCch-hHHHHHHHHHHHHhcC
Q 039940          244 GHP---------------SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK-SIKKESCWTVSNITAG  307 (449)
Q Consensus       244 ~~~---------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~v~~~a~~~l~nl~~~  307 (449)
                      ...               ...++..++.+++.++...+....... ..+++.+...+++. +. .++..++.+++.++..
T Consensus       551 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~  628 (861)
T 2bpt_A          551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAAS  628 (861)
T ss_dssp             HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHH
Confidence            421               334677889999998865443222112 24677888888877 66 8999999999999853


Q ss_pred             CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHH
Q 039940          308 NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD--PEIVTVCLKG  385 (449)
Q Consensus       308 ~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~--~~~~~~~~~~  385 (449)
                      .......... .+++.+...+.++++.++..++.++..++...+.....++  ..+++.+...+.+.+  ++++..++.+
T Consensus       629 ~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~  705 (861)
T 2bpt_A          629 LGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSV  705 (861)
T ss_dssp             HGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred             HhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHH
Confidence            2222222222 3788999999878889999999999999876543333322  236777778887654  8899999999


Q ss_pred             HHHHHHhhhh
Q 039940          386 LENILKVGEA  395 (449)
Q Consensus       386 l~~l~~~~~~  395 (449)
                      +..++.....
T Consensus       706 l~~l~~~~~~  715 (861)
T 2bpt_A          706 FGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHHhhh
Confidence            9999886543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.67  E-value=3.8e-15  Score=152.91  Aligned_cols=400  Identities=12%  Similarity=0.139  Sum_probs=262.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh-
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT-  101 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-  101 (449)
                      .++.+.+.+.+.++..+..|+.++..++.+.......... ..+++.++..+.+++ +.++..++++++.++....... 
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence            3455556667888999999999999997543112122222 357888999999988 8999999999999886321100 


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-----CchhhhHhhcCCHHHHHHHHcc-cccHHHHHHHHHHH
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-----PGCRNLVLHEEALIPLLAQLNE-HARLSMLRIGTWTL  175 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~l  175 (449)
                      ..-.-..+++.++..+.++ +.++..+++++.+++...     ......+  ...++.++..+.. +.++.++..++.++
T Consensus       448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            0001114578888888765 899999999999997532     1122222  2346667777742 33478999999999


Q ss_pred             HHhhcCCCCCChhhhhchHHHHHHhhcCC---------------CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940          176 SNLCKGKPQPPFDQVRPVLPALAQLIHLD---------------DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV  240 (449)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~  240 (449)
                      ..++...+.........++|.++..+...               ...++..++.++.+++..-+........ .+++.+.
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~  603 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF  603 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence            99998765443444566777777666521               3457788899998888654432211222 5677788


Q ss_pred             HhhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 039940          241 ELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG  319 (449)
Q Consensus       241 ~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  319 (449)
                      ..+.+.+. .++..++.+++.++..........+ ..+++.+...+.++ ++.++..++.+++.++........... ..
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~  680 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA  680 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence            88887777 8999999999998765333332222 23788899999777 888999999999999863322222222 24


Q ss_pred             ChHHHHHHhhcCc--hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC-----------HHHHHHHHHHH
Q 039940          320 LIVPLVNLLQDAE--FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD-----------PEIVTVCLKGL  386 (449)
Q Consensus       320 ~~~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~-----------~~~~~~~~~~l  386 (449)
                      +++.++..+.+.+  ++++..++.+++.++.........++-  .+++.+...++...           ..++..+++++
T Consensus       681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~  758 (861)
T 2bpt_A          681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY  758 (861)
T ss_dssp             HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence            6778888887764  899999999999998864334444332  25777777776421           34788889999


Q ss_pred             HHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC----CHHHHHHHHHHHHHh
Q 039940          387 ENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG----NNGIREKAVTILETY  444 (449)
Q Consensus       387 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~i~~~a~~~i~~~  444 (449)
                      ..++........      ...+|...     .++.+.....+.    +..++..|...+..+
T Consensus       759 ~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l  809 (861)
T 2bpt_A          759 VGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDI  809 (861)
T ss_dssp             HHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence            888865431000      01111111     244454444332    788999888887765

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.64  E-value=2.3e-14  Score=147.39  Aligned_cols=276  Identities=19%  Similarity=0.194  Sum_probs=194.9

Q ss_pred             hcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcH-HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           22 EILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPI-DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        22 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      ..++.+.+.+.++  +..++..|+.++..++..- .... .......+++.+...+.+.+ .+++..++.+|..++...+
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~  249 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYY  249 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhH
Confidence            4466677777776  6899999999999887532 1110 01111235777778887777 8999999999999997555


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc------------------hhhhH--hhcCCHHHHHHH
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG------------------CRNLV--LHEEALIPLLAQ  158 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~i~~l~~~  158 (449)
                      ......+...+++.++..+.+.++.++..+++++..++.....                  .....  .-...++.++..
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~  329 (876)
T 1qgr_A          250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  329 (876)
T ss_dssp             GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence            5444445557788998888888999999999999988743100                  00000  012345556666


Q ss_pred             Hcc------cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHH
Q 039940          159 LNE------HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVI  231 (449)
Q Consensus       159 l~~------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~  231 (449)
                      +..      +.+..++..+..++..++...+.   .....+++.+...+.++++.++..++++++.++.+.. +......
T Consensus       330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~  406 (876)
T 1qgr_A          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV  406 (876)
T ss_dssp             TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            632      23457888899999888876431   3356788888888888999999999999999997754 3333233


Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhH--HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                       ..+++.++..+.++++.+|..|++++++++...+...  ... -..+++.++..+.+  ++.++..+++++++++.
T Consensus       407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence             3588999999999999999999999999987543211  011 12467778888865  37899999999999985

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.64  E-value=3.3e-14  Score=146.15  Aligned_cols=402  Identities=16%  Similarity=0.183  Sum_probs=248.0

Q ss_pred             hcHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940           22 EILPAMVAGVWS-------DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA   94 (449)
Q Consensus        22 ~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~   94 (449)
                      ..+|.+++.+..       +++.++..|+.+|..++...+..    ++ ..+++.+...+.+++ ..++..|+++++.++
T Consensus       321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~----~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~  394 (876)
T 1qgr_A          321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD----IV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCIL  394 (876)
T ss_dssp             HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred             HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh----hH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHH
Confidence            457777888752       35678888888888887543211    11 245677778888888 899999999999999


Q ss_pred             CCCh-hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch---hhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940           95 SGTS-VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC---RNLVLHEEALIPLLAQLNEHARLSMLRI  170 (449)
Q Consensus        95 ~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~  170 (449)
                      .+.. +...... ..+++.++..+.++++.+|..|++++++++...+..   ...+  ...++.++..+ .+ ++.++..
T Consensus       395 ~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l-~~-~~~v~~~  469 (876)
T 1qgr_A          395 EGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGL-SA-EPRVASN  469 (876)
T ss_dssp             SSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHT-TS-CHHHHHH
T ss_pred             cCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHH-cC-CHHHHHH
Confidence            8544 3332222 357899999999999999999999999998654321   1111  23566777777 33 3889999


Q ss_pred             HHHHHHHhhcCCC--------------CCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcc-------------
Q 039940          171 GTWTLSNLCKGKP--------------QPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLS-------------  220 (449)
Q Consensus       171 a~~~l~~l~~~~~--------------~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~-------------  220 (449)
                      +++++.+++....              ..-......+++.+...+...   +..++..++.++..++             
T Consensus       470 a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~  549 (876)
T 1qgr_A          470 VCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK  549 (876)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            9999999886421              112233467777777777643   2345444444444433             


Q ss_pred             -------------------------------------------cCCh-hHHHHHHHhCcHHHHHHhhCCCC--CcchhhH
Q 039940          221 -------------------------------------------DGTN-DKIQAVIEAGVCGPLVELLGHPS--PSVLIPA  254 (449)
Q Consensus       221 -------------------------------------------~~~~-~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~a  254 (449)
                                                                 ..-. ....... ..+++.++.++++..  +.++..+
T Consensus       550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a  628 (876)
T 1qgr_A          550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDA  628 (876)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHH
Confidence                                                       2211 1111011 135667777777664  4688999


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--Cc
Q 039940          255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD--AE  332 (449)
Q Consensus       255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~  332 (449)
                      +.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++........... ..+++.++..+.+  .+
T Consensus       629 ~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~  706 (876)
T 1qgr_A          629 LMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVH  706 (876)
T ss_dssp             HHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSC
T ss_pred             HHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCcccc
Confidence            99999988643222222222 36778888887643678999999999999863222222222 2577888888877  36


Q ss_pred             hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC----CH-------HHHHHHHHHHHHHHHhhhhhhcc-C
Q 039940          333 FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA----DP-------EIVTVCLKGLENILKVGEAKKNR-G  400 (449)
Q Consensus       333 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~----~~-------~~~~~~~~~l~~l~~~~~~~~~~-~  400 (449)
                      .+++..+++++++++....++...++  ..+++.|...++.+    |+       .++..++.++..++......... .
T Consensus       707 ~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~  784 (876)
T 1qgr_A          707 RSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH  784 (876)
T ss_dssp             GGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred             HHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence            78999999999999874333332222  12556666666533    22       67888888888888764321000 0


Q ss_pred             CCCCcccHHHHHHHhcchHHHHHHHhcCC--CHHHHHHHHHHHHHh
Q 039940          401 STIGDVNQYARLVEGAEGFKKIEDLKSHG--NNGIREKAVTILETY  444 (449)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~i~~~a~~~i~~~  444 (449)
                      .......+|...+     +..+..+..++  ++.++..|...+-.+
T Consensus       785 ~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l  825 (876)
T 1qgr_A          785 PDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDL  825 (876)
T ss_dssp             GGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            0000112233222     34444444455  678888887777654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.63  E-value=2.9e-15  Score=142.41  Aligned_cols=362  Identities=13%  Similarity=0.104  Sum_probs=245.3

Q ss_pred             hhcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCC----------cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 039940           21 LEILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSL----------PIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW   88 (449)
Q Consensus        21 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~   88 (449)
                      .+.+..+.+.+.+.  ++.+|..|+..|.++.......          ....-....+-..++..+.+++ +.+ ..++.
T Consensus        34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~  111 (462)
T 1ibr_B           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQ  111 (462)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHH
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHH
Confidence            34555666777654  6899999999999997542000          0000112234456777888877 677 88999


Q ss_pred             HHHHhcCCC-hhhhHHHHhCCChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccc-
Q 039940           89 VLTNIASGT-SVNTKVLIDHGAVPIFVKLLASP--SDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHA-  163 (449)
Q Consensus        89 ~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~-  163 (449)
                      +++.++... +..    .-.++++.|+..+.++  ++.+++.++.+|+.++... +..-... ....++.++..+.+.. 
T Consensus       112 ~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~  186 (462)
T 1ibr_B          112 CVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEP  186 (462)
T ss_dssp             HHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCC
Confidence            999988632 210    1136789999999888  8999999999999998643 2211111 1235667777774432 


Q ss_pred             cHHHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH
Q 039940          164 RLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE  241 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  241 (449)
                      ++.++..+++++.++.....  .........+++.+...+.+++++++..++.++..++...+......+..++++.++.
T Consensus       187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~  266 (462)
T 1ibr_B          187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE  266 (462)
T ss_dssp             CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999998764321  0011111235777777788889999999999999988655432221222266777888


Q ss_pred             hhCCCCCcchhhHHHHHHHhhcCChh---------------------hHHHHHhcCCHHHHHHHhccC------CchhHH
Q 039940          242 LLGHPSPSVLIPALRTVGNIVTGDDF---------------------QTQCVINHGAVPYLLALLINN------HKKSIK  294 (449)
Q Consensus       242 ll~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l~~L~~ll~~~------~~~~v~  294 (449)
                      .+.+.+++++..++.++..++.....                     ..+.. -..+++.++..+...      .+..+|
T Consensus       267 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r  345 (462)
T 1ibr_B          267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPC  345 (462)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHH
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHH
Confidence            88888889999999999888754200                     00000 123566677777432      145789


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC
Q 039940          295 KESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA  374 (449)
Q Consensus       295 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~  374 (449)
                      ..|+.+|..++...++   .+. ..+++.+...+.+.+..+|..|+.+++.++.+..++...... ..+++.+...+.++
T Consensus       346 ~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~  420 (462)
T 1ibr_B          346 KAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP  420 (462)
T ss_dssp             HHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC
Confidence            9999999999863222   122 146778888888889999999999999999864422211111 45788999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhh
Q 039940          375 DPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       375 ~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      ++.++..|+++|.+++.....
T Consensus       421 ~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          421 SVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999987654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.62  E-value=8.2e-14  Score=136.31  Aligned_cols=290  Identities=16%  Similarity=0.110  Sum_probs=218.1

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .-.+..+.+.|+++++.++..|+++|.++...   +    +. ..+++.+..++.+++ +.++..|+.++.++...+++.
T Consensus       106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~  176 (618)
T 1w63_A          106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---E----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPEL  176 (618)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---H----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---H----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHH
Confidence            45677888888999999999999999998521   1    21 345788899999998 999999999999999866654


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc--------------cccHH
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE--------------HARLS  166 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~  166 (449)
                      ..     ++++.+..++.+.++.++..|+++|..++..++.....+  ...++.++..|.+              ..++-
T Consensus       177 v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~  249 (618)
T 1w63_A          177 ME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPF  249 (618)
T ss_dssp             GG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred             HH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence            32     678889999999999999999999999987665432222  3567778877743              24777


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940          167 MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH------LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV  240 (449)
Q Consensus       167 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~  240 (449)
                      .+..++.++..++..++    .......+.|..++.      +.+..+...+++++..+... +.    +.. ..++.|.
T Consensus       250 ~q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~  319 (618)
T 1w63_A          250 LQVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILG  319 (618)
T ss_dssp             HHHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHH
Confidence            88889999999887643    122344555555543      23567888999999887542 21    111 3567888


Q ss_pred             HhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 039940          241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL  320 (449)
Q Consensus       241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  320 (449)
                      .++.++++.++..|+.+|+.++...+..    + ......++.++.++ +..+|..|..++..++....  +..     +
T Consensus       320 ~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----i  386 (618)
T 1w63_A          320 RFLLNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----M  386 (618)
T ss_dssp             HHHTCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----H
T ss_pred             HHHhCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----H
Confidence            8899999999999999999998754332    2 23567888899988 99999999999999976432  112     3


Q ss_pred             hHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          321 IVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      ++.|...+.+.+.+++..+..+++.++..
T Consensus       387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          387 MKELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            56777778888899999999999999875

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.62  E-value=1.6e-14  Score=137.25  Aligned_cols=387  Identities=12%  Similarity=0.085  Sum_probs=264.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhH
Q 039940           24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      +..++..+.++|..+|..|-..|.++....         ..+.+..|+.++.+.+ +..++..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            456677778999999999999998864310         1245667778777652 479999999999999764311110


Q ss_pred             H-----------HHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccc--cHHHH
Q 039940          103 V-----------LIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHA--RLSML  168 (449)
Q Consensus       103 ~-----------~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~  168 (449)
                      .           -....+-..++..+.++++.+ ..+..+++.++... |..  .  -.+.++.++..+ .+.  ++.++
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~--w~~ll~~L~~~l-~~~~~~~~~r  147 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--Q--WPELIPQLVANV-TNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--C--CTTHHHHHHHHH-HCTTCCHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--c--cHHHHHHHHHHh-ccCCCCHHHH
Confidence            0           011123456778888877778 88899999987543 210  0  134677888888 555  88999


Q ss_pred             HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHH-HHHHhCcHHHHHHhhC
Q 039940          169 RIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQ-AVIEAGVCGPLVELLG  244 (449)
Q Consensus       169 ~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~ll~  244 (449)
                      ..++.++..++... +.........+++.+...+.++  ++.++..++.++.++...-.+... .....-+++.+...+.
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  227 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ  227 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            99999999999754 2222334467888999999887  799999999999987643321111 0111124667777788


Q ss_pred             CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--------------
Q 039940          245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK--------------  310 (449)
Q Consensus       245 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~--------------  310 (449)
                      +++++++..++.++..++...+......+..++++.++..+++. ++.++..|+.++..++.....              
T Consensus       228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  306 (462)
T 1ibr_B          228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP  306 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            88899999999999999865543322222226778888888887 899999999999988753211              


Q ss_pred             -------HHHHHHHCCChHHHHHHhhc-------CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940          311 -------QIQAVIDAGLIVPLVNLLQD-------AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP  376 (449)
Q Consensus       311 -------~~~~l~~~~~~~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~  376 (449)
                             ...... ..++|.++..+..       ++..+|..|+.+|..++.........     .+++.+...+++.++
T Consensus       307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~  380 (462)
T 1ibr_B          307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW  380 (462)
T ss_dssp             SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred             ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence                   000011 2356667666643       24578999999999998764322222     357778888889999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          377 EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       377 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      .++..++.++..+.........           ...  -...++.+..+..++++.++..|...+.++.
T Consensus       381 ~~r~aal~~l~~l~~~~~~~~~-----------~~~--l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~  436 (462)
T 1ibr_B          381 RYRDAAVMAFGCILEGPEPSQL-----------KPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (462)
T ss_dssp             HHHHHHHHHHHHTSSSSCTTTT-----------CTT--TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHH-----------HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9999999999999864331110           001  1345677788888899999999999988764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.60  E-value=2e-13  Score=145.10  Aligned_cols=357  Identities=11%  Similarity=0.123  Sum_probs=247.9

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ..++.+++.+.+.|+.+|..|...|.+....... ....-....+++.+++.+.+++ +++|..|+.+|+.++...++. 
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-   82 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-   82 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH-
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH-
Confidence            4578899999999999999999999887654311 1111112245788899999887 899999999999999754431 


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh-----hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR-----NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS  176 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~  176 (449)
                       .+  ..+++.++..+.++++.+|..++.+|+.++...+...     ..-.-...++.++..+.++.+..++..++.++.
T Consensus        83 -~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 -QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             -HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             -HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence             11  1357888899988889999999999999985432210     001123467788888843578899999999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHH
Q 039940          177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPAL  255 (449)
Q Consensus       177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~  255 (449)
                      .++...+..-......+++.+...+.++++.++..++.+++.++...++.   ++ ..+++.++..+... ++.++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99865433222345788899999999999999999999999999765432   22 24677777777654 357888999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh------
Q 039940          256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ------  329 (449)
Q Consensus       256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~------  329 (449)
                      .+++.++...+..... .-..+++.++..+.+. ++.+|..++.++..++...++.....+. .+++.++..+.      
T Consensus       236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence            9999987654332211 1246889999999888 8999999999999988632221111111 12333332221      


Q ss_pred             -------------------------------cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHH
Q 039940          330 -------------------------------DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI  378 (449)
Q Consensus       330 -------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~  378 (449)
                                                     +...++|..|+.++..++.... +....++ ..+++.+...+.+.++.+
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~d~~~~V  390 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREENV  390 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSSHH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHHH-HHHHHHHHHHcCCCchHH
Confidence                                           1124579999999999987533 2122222 347888888888889999


Q ss_pred             HHHHHHHHHHHHHhh
Q 039940          379 VTVCLKGLENILKVG  393 (449)
Q Consensus       379 ~~~~~~~l~~l~~~~  393 (449)
                      +..++.++..++...
T Consensus       391 r~~a~~~l~~l~~~~  405 (1230)
T 1u6g_C          391 KADVFHAYLSLLKQT  405 (1230)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998888653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.60  E-value=2.6e-13  Score=132.75  Aligned_cols=325  Identities=16%  Similarity=0.133  Sum_probs=237.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      +...+++++.+++...+..+.-.+..++...  +  +.+.  -+++.+.+-+++++ +.++..|+++|+++..  ++...
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~  141 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR  141 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH
Confidence            4455666777777777777777777775421  1  1111  13677888888988 8999999999999985  44332


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                           .+++.+.+++.++++.+|..|+.++.++....|+...     +.++.+..++ .+.++.++..|++++..++...
T Consensus       142 -----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          142 -----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             -----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence                 4578899999999999999999999999877665322     4566666666 7889999999999999998764


Q ss_pred             CCCChhhhhchHHHHHHhhcC---------------CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--
Q 039940          183 PQPPFDQVRPVLPALAQLIHL---------------DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--  245 (449)
Q Consensus       183 ~~~~~~~~~~~l~~l~~ll~~---------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--  245 (449)
                      +.. .......+|.++.+|.+               .++..+..++.++..++..++...+     .+.+.|..++..  
T Consensus       211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~  284 (618)
T 1w63_A          211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTE  284 (618)
T ss_dssp             HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSC
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccc
Confidence            321 22335667777766652               4788999999999999987664322     455566665532  


Q ss_pred             ----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Q 039940          246 ----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI  321 (449)
Q Consensus       246 ----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~  321 (449)
                          .+..+..++++++..+... +...     ..+++.|..++.++ ++.+|..|..+|+.++...+..    +. ...
T Consensus       285 ~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~----~~-~~~  352 (618)
T 1w63_A          285 TSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNA----VQ-RHR  352 (618)
T ss_dssp             CSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHH----HG-GGH
T ss_pred             cccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHH----HH-HHH
Confidence                2346888889988887542 2211     13567888889988 9999999999999998754442    22 356


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      +.++..+.+++..+|..|+.++..++...+-   ..     +++.|...+.+.|.+++..++.++..+....
T Consensus       353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv---~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          353 STIVDCLKDLDVSIKRRAMELSFALVNGNNI---RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             HHHHHGGGSSCHHHHHHHHHHHHHHCCSSST---HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHccCCChhHHHHHHHHHHHHcccccH---HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            7888899999999999999999999886432   22     3466677777788999999999999988753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.54  E-value=9e-13  Score=140.10  Aligned_cols=402  Identities=12%  Similarity=0.096  Sum_probs=268.1

Q ss_pred             hhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           21 LEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        21 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      ...+|.+++.+. ++++.++..|+.+|..++...+......  -..+++.++..+.+++ ..++..|+.+++.++...++
T Consensus       132 ~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~  208 (1230)
T 1u6g_C          132 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGN  208 (1230)
T ss_dssp             HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCH
Confidence            467899999998 5889999999999999875321111111  1345788888899888 89999999999999974432


Q ss_pred             hhHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCCCc-hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940          100 NTKVLIDHGAVPIFVKLLASP-SDDVREQAVWALGNIVAHSPG-CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN  177 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~  177 (449)
                      .   + -...++.++..+.+. +...+..++.+++.++...+. +...  -...++.++..+ .+.+++++..+++++..
T Consensus       209 ~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~--l~~l~~~ll~~l-~d~~~~vR~~a~~~l~~  281 (1230)
T 1u6g_C          209 I---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFC-NVDDDELREYCIQAFES  281 (1230)
T ss_dssp             ------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS--CTTHHHHHHHHH-SSCCTTTHHHHHHHHHH
T ss_pred             H---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence            2   1 224578888877543 346777788888888754332 1111  134677788887 56788899999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCC-------------------------------------CHHHHHHHHHHHHHcc
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIHLD-------------------------------------DEEVLRNVCWTLSNLS  220 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~~~-------------------------------------~~~~~~~~~~~l~~l~  220 (449)
                      ++...+.........++|.++..+..+                                     ..+++..++.++..++
T Consensus       282 l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~  361 (1230)
T 1u6g_C          282 FVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVV  361 (1230)
T ss_dssp             HHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHH
T ss_pred             HHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHH
Confidence            988754443345566777776665310                                     1346888888888888


Q ss_pred             cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-------------------hhHHHHHhcCCHHHH
Q 039940          221 DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD-------------------FQTQCVINHGAVPYL  281 (449)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-------------------~~~~~~~~~~~l~~L  281 (449)
                      ...++....++. .+++.++..+.+.++.++..++.++..++....                   ..... .-..+++.+
T Consensus       362 ~~~~~~~~~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~l  439 (1230)
T 1u6g_C          362 STRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-QVPNIVKAL  439 (1230)
T ss_dssp             TTCCTTHHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHH-HTTHHHHHH
T ss_pred             HhchhHHHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHH-HhhHHHHHH
Confidence            654432333333 678888888888899999999999887764210                   11111 123466677


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCch--hHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940          282 LALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEF--DIKKEAAWAISNATKAGTQEQIKYLV  359 (449)
Q Consensus       282 ~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~--~v~~~a~~aL~~l~~~~~~~~~~~l~  359 (449)
                      ...+.++ ++.+|..++.+++.++...+......+ ..+++.++..+.+.++  .++..++.++..+.....++......
T Consensus       440 ~~~l~~~-~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l  517 (1230)
T 1u6g_C          440 HKQMKEK-SVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV  517 (1230)
T ss_dssp             HHHTTCS-CHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH
T ss_pred             HHHhccC-CHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH
Confidence            7778888 889999999999998864322111111 2467888888887754  89999999999987644444222222


Q ss_pred             HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh--cCCCHHHHHHH
Q 039940          360 REGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK--SHGNNGIREKA  437 (449)
Q Consensus       360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~i~~~a  437 (449)
                       ..+++.|...+++.++.++..++.++..+++..........  ....+|...+     ++.+....  .+.+++++..|
T Consensus       518 -~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~~~~~~~~l-----l~~ll~~l~~~d~~~~vr~~a  589 (1230)
T 1u6g_C          518 -QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSS--FDATPYIKDL-----FTCTIKRLKAADIDQEVKERA  589 (1230)
T ss_dssp             -TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCC--CCCHHHHHHH-----HHHHHHHHSCSSSCHHHHHHH
T ss_pred             -HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccc--cchHHHHHHH-----HHHHHHHHhccCCCHHHHHHH
Confidence             35899999999998999988999999999876533100000  1122344333     34444443  56778888877


Q ss_pred             HHHHHHh
Q 039940          438 VTILETY  444 (449)
Q Consensus       438 ~~~i~~~  444 (449)
                      ...+..+
T Consensus       590 ~~~lg~L  596 (1230)
T 1u6g_C          590 ISCMGQI  596 (1230)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.51  E-value=3.2e-12  Score=106.57  Aligned_cols=185  Identities=21%  Similarity=0.243  Sum_probs=157.2

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940          108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF  187 (449)
Q Consensus       108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  187 (449)
                      +..+.+++.|.++++.+|..|+++|+.+..           ...++.++..+ .+.++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457899999999999999999999998732           24677888888 78899999999999998753       


Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940          188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  267 (449)
                         ...++.+..++.++++.++..++++|+.+..           .+.++.+..++.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2678999999999999999999999998753           2467889999999999999999999998853    


Q ss_pred             hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .+.         .++.|..++.++++.+|..|..+|..+-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999992  333         5677888888999999999999999874


Q ss_pred             c
Q 039940          348 K  348 (449)
Q Consensus       348 ~  348 (449)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=1.1e-12  Score=110.28  Aligned_cols=187  Identities=21%  Similarity=0.230  Sum_probs=156.8

Q ss_pred             CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940          108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF  187 (449)
Q Consensus       108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  187 (449)
                      +.++.|+..|.++++.+|..+++.|+.+..           ...++.++..+ .++++.++..++++|..+..       
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            568999999999999999999999998732           24677888888 67899999999999999863       


Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940          188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~  267 (449)
                         ...++.+..++.++++.++..++++|+.+..           .+.++.|..++.++++.++..|+.+|+.+..    
T Consensus        80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence               3678999999999999999999999998753           2467889999999999999999999999843    


Q ss_pred             hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                             ...++.|..++.++ ++.+|..|+++|+.+..  +         ..++.|..++.++++.+|..|..+|.++.
T Consensus       142 -------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  202 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHK  202 (211)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                   24678899999888 99999999999999932  2         25677888899999999999999999987


Q ss_pred             ccC
Q 039940          348 KAG  350 (449)
Q Consensus       348 ~~~  350 (449)
                      ..+
T Consensus       203 ~~~  205 (211)
T 3ltm_A          203 SFN  205 (211)
T ss_dssp             ---
T ss_pred             CCC
Confidence            753

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=1.5e-12  Score=109.57  Aligned_cols=187  Identities=20%  Similarity=0.182  Sum_probs=157.7

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940           64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      .+.++.|+..|++++ +.++..|+..|+.+..           .+.++.|+.++.++++.+|..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            456899999999988 8999999999998865           1568999999999999999999999999842      


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                           .+.++.++..+ +++++.++..++++|..+..          ...++.+..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 24577888888 78899999999999999854          2678999999999999999999999999852  


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940          224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN  303 (449)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  303 (449)
                               ...++.|..++.++++.++..++.+|+.+..           ...++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2467889999999999999999999998843           23567788899888 99999999999999


Q ss_pred             HhcC
Q 039940          304 ITAG  307 (449)
Q Consensus       304 l~~~  307 (449)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.49  E-value=1.4e-12  Score=108.83  Aligned_cols=185  Identities=19%  Similarity=0.187  Sum_probs=158.0

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      .+..+.+++.|.++++.++..|+..|..+..            .+.++.|++++.+++ +.++..|+++|+.+..  +  
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~--~--   75 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD--E--   75 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--G--
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--H--
Confidence            5788999999999999999999999988742            245889999999888 8999999999999864  2  


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                             +.++.|+.++.++++.+|..++++|+++..           ...++.++..+ .++++.++..+++++..+..
T Consensus        76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~  136 (201)
T 3ltj_A           76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD  136 (201)
T ss_dssp             -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC
T ss_pred             -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC
Confidence                   468999999999999999999999999832           23567788888 78899999999999999854


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 039940          181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN  260 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~  260 (449)
                                ...++.+..++.++++.++..++++|+.+..  +         ..++.|..++.++++.++..|..+|..
T Consensus       137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLET  195 (201)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                      3688999999999999999999999999842  1         356788888888999999999999987


Q ss_pred             hh
Q 039940          261 IV  262 (449)
Q Consensus       261 l~  262 (449)
                      +.
T Consensus       196 l~  197 (201)
T 3ltj_A          196 HK  197 (201)
T ss_dssp             CC
T ss_pred             HH
Confidence            64

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.46  E-value=2.6e-10  Score=111.27  Aligned_cols=333  Identities=13%  Similarity=0.085  Sum_probs=234.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      +.+.+++++.+++...+..+.-.+..++...  +  +.+.  =+++.+.+=+++++ +.++..|+++++++..  ++..+
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence            4567778888999999888888888886432  2  2111  12566777788888 8999999999999975  55443


Q ss_pred             HHHhCCChHHHHHhh--CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          103 VLIDHGAVPIFVKLL--ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                           .+++.+.+++  .+.++.+|..|+.++.++....|+.   +...+.++.+..++ .+.++.++..|+.++..++.
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence                 3478899999  8899999999999999998766543   22246788888888 78899999999999999988


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCC-------------CHHHHHHHHHHHHHcccCC-hhHHHHHHHhCcHHHHHHhhC-C
Q 039940          181 GKPQPPFDQVRPVLPALAQLIHLD-------------DEEVLRNVCWTLSNLSDGT-NDKIQAVIEAGVCGPLVELLG-H  245 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~~l~~ll~~~-------------~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~ll~-~  245 (449)
                      ..+..-.......+..+.+++..+             ++..+..++..+..++... ++....+.+  +++.++..+. .
T Consensus       217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~  294 (621)
T 2vgl_A          217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP  294 (621)
T ss_dssp             HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred             hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence            653211111223333444444321             6889999999999998653 333332322  3444443321 1


Q ss_pred             C--------C--CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          246 P--------S--PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       246 ~--------~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                      +        +  ..+..+++.++..+.. .++...     .++..|..++.++ ++.+|..|...+..++...+. . .+
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~  365 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA  365 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence            1        2  2677778888877753 232222     3567788888888 999999999999999875431 1 12


Q ss_pred             HHCCChHHHHHHhh-cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          316 IDAGLIVPLVNLLQ-DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       316 ~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      +. ...+.++..+. +++..++..++..+..++.   +...+.     ++..|...+.+.|.+++..++..+..+....
T Consensus       366 ~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~  435 (621)
T 2vgl_A          366 VK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKY  435 (621)
T ss_dssp             HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            22 46778888888 8899999999999999985   345554     4556677777788898888888888887554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.32  E-value=1.3e-08  Score=99.24  Aligned_cols=299  Identities=11%  Similarity=0.041  Sum_probs=209.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      .+....++++.+++ ...+..+.-.+..++..+++....     +++.+.+=+.++++.+|..|+++++++..  ++.. 
T Consensus        74 ~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~-  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMA-  144 (621)
T ss_dssp             SCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH-
T ss_pred             hhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH-
Confidence            45778888999988 799999999999999876654432     26788888889999999999999999943  3322 


Q ss_pred             hHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          145 LVLHEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                          ...++.+.+.+. .+.++.+++.|+.++.++....|....  ..+.++.+..+|.+.|+.++..++.++..++..+
T Consensus       145 ----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          145 ----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP--MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             ----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC--CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC--chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence                234556666663 467899999999999999986542221  1478899999999999999999999999998766


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCC-------------CCcchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhc---
Q 039940          224 NDKIQAVIEAGVCGPLVELLGHP-------------SPSVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLI---  286 (449)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~ll~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~---  286 (449)
                      +......+. .++..|..++..+             ++-.+...+..++.++... +.....+.+  .++.++..+.   
T Consensus       219 ~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~  295 (621)
T 2vgl_A          219 PEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP  295 (621)
T ss_dssp             HHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred             hHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence            542221111 2233333443221             3456777777787777542 333333322  3444443321   


Q ss_pred             ------cCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHH
Q 039940          287 ------NNHK--KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYL  358 (449)
Q Consensus       287 ------~~~~--~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  358 (449)
                            +. +  ..|..+++.++..+. .+++...     .++..|..++.+.++++|..|+.+|..++.... . ... 
T Consensus       296 ks~~l~~~-n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~~~-  365 (621)
T 2vgl_A          296 KSKKVQHS-NAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-HEA-  365 (621)
T ss_dssp             SCSSHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-HHH-
T ss_pred             cccccccc-chHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-HHH-
Confidence                  12 2  378888999988885 3444333     256678888888899999999999999998632 1 111 


Q ss_pred             HHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHh
Q 039940          359 VREGCIKPLCDLLL-CADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       359 ~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~  392 (449)
                      + ......++.++. ++|..++..+++++..++..
T Consensus       366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence            2 236777888888 88999999999999888743

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.25  E-value=1.5e-09  Score=83.62  Aligned_cols=218  Identities=16%  Similarity=0.199  Sum_probs=175.7

Q ss_pred             hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC
Q 039940          106 DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP  185 (449)
Q Consensus       106 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  185 (449)
                      +..++..++.+|.++-+.++.+|+.++.+++...|+....     .+..++.++.++...........+++.++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            4467899999999988999999999999999888775443     355788888788888887788888998887653  


Q ss_pred             ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 039940          186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD  265 (449)
Q Consensus       186 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  265 (449)
                        ....+.+|.+..-..-.|++++.+...+|..++..+|....     +++.-+..++.+++..-+..|+.+++.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              45578888888888888999999999999999998886544     56677888999888777888888887776554


Q ss_pred             hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940          266 DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN  345 (449)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~  345 (449)
                      ....     ...+|.|..+|.+. +.-||..|.-+|.+++..++..+..+      ..-+.-+++.+..++...-.+|+.
T Consensus       176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHH
Confidence            4332     35899999999999 99999999999999999988855433      234455677788899998889888


Q ss_pred             hhcc
Q 039940          346 ATKA  349 (449)
Q Consensus       346 l~~~  349 (449)
                      +..-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.17  E-value=1.5e-09  Score=87.48  Aligned_cols=225  Identities=17%  Similarity=0.184  Sum_probs=174.5

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  270 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~  270 (449)
                      .+.+..+..+++..|+.++..++.++..+....+.......-..+++.++.++.+.+..+...|+.|+..+..+.+-..+
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            46788999999999999999999999999877544444444447899999999999999999999999999887554333


Q ss_pred             HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                      .+.  .+...+..+++++ ++-++.+|+-.++.+-..++..       +++..+.+++.+.+..++..|..++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            333  2677889999988 9999999999999984322111       36678888898889999999999999999863


Q ss_pred             -CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh-cC
Q 039940          351 -TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK-SH  428 (449)
Q Consensus       351 -~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~  428 (449)
                       +++..     .+++.-+-.+++++|+.+++.|+.++..++...-..          +......   +.......+. ..
T Consensus       182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~~~~~~---~~~~~v~~l~~~~  243 (265)
T 3b2a_A          182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NVKIELL---KISRIVDGLVYRE  243 (265)
T ss_dssp             SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CCHHHHH---HHHHHHHHGGGCS
T ss_pred             CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hHHHHHH---HHHHHHHHHHHhc
Confidence             22222     246777888999999999999999999999874331          1122222   3456778887 77


Q ss_pred             CCHHHHHHHHHHHHH
Q 039940          429 GNNGIREKAVTILET  443 (449)
Q Consensus       429 ~~~~i~~~a~~~i~~  443 (449)
                      ..|.++.+|.++.+.
T Consensus       244 ~~~~~~~ka~~v~~~  258 (265)
T 3b2a_A          244 GAPIIRLKAKKVSDL  258 (265)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHH
Confidence            889999999887664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.15  E-value=5.1e-09  Score=103.48  Aligned_cols=307  Identities=15%  Similarity=0.103  Sum_probs=207.3

Q ss_pred             hcHHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHH
Q 039940           22 EILPAMVAGVW---SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-------YPRLQFEAAWVLT   91 (449)
Q Consensus        22 ~~i~~l~~~l~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------~~~~~~~a~~~L~   91 (449)
                      +++..+-+.|.   ++++.++..|+..|..+..+.+.    .     ++..|...+.+++       .+.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34566666666   66788999999999888765421    1     3666777776544       2578888999999


Q ss_pred             HhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHH
Q 039940           92 NIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIG  171 (449)
Q Consensus        92 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  171 (449)
                      .+..++..  .     .+++.|..++.+++..+++.|..+|+.+-.++..       ..++..++..+..+.+..+++.+
T Consensus       463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~a  528 (963)
T 4ady_A          463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGL  528 (963)
T ss_dssp             HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHH
Confidence            98764421  1     2467788888877777888888899987544322       12345677766566778999999


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCc
Q 039940          172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPS  249 (449)
Q Consensus       172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~  249 (449)
                      +..|..+..+.        ...++.++..|. +.++-++..++.+++--..+..+.       ..++.|+.. ..+.+..
T Consensus       529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99999887665        255666666665 467888888777776444332221       123433333 3456778


Q ss_pred             chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940          250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~  329 (449)
                      +|..|+.+|+.+..++++         .++.++.++.+..++.+|..|+++++.++.+++..       .+++.|..+.+
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~  657 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHcc
Confidence            999999999998877542         45566665544449999999999999998865431       25667888889


Q ss_pred             cCchhHHHHHHHHHHHhhccCCHH---HHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHH
Q 039940          330 DAEFDIKKEAAWAISNATKAGTQE---QIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLE  387 (449)
Q Consensus       330 ~~~~~v~~~a~~aL~~l~~~~~~~---~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~  387 (449)
                      +.+..|+..|+.+|+.+....+..   ....     ....|.....+  +|+..+..+.-+..
T Consensus       658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~~dk~~d~~~~fga~iAqG  715 (963)
T 4ady_A          658 DPVDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVITNKHQEGLAKFGACVAQG  715 (963)
T ss_dssp             CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            999999999999999998864433   2222     23445555543  35555555544444

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.09  E-value=3.1e-09  Score=105.05  Aligned_cols=219  Identities=14%  Similarity=0.101  Sum_probs=156.4

Q ss_pred             HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH-HhhCCCChHHHHHHHHHHHHHhcC-
Q 039940           61 VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV-KLLASPSDDVREQAVWALGNIVAH-  138 (449)
Q Consensus        61 ~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~-  138 (449)
                      ..+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..++ .+|.+++.++|..|+++|+||+.+ 
T Consensus        31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            34455555 556789998 8999999999999997 788899999988887654 578889999999999999999954 


Q ss_pred             CCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940          139 SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN  218 (449)
Q Consensus       139 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  218 (449)
                      .+.....+...|++++|...+.+. .        ..+....... ..........+           ..+...++.+|.+
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~~~-~--------~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~l~lL~~  166 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAKAV-L--------ETLTTSEPPF-SKLLKAQQRLV-----------WDITGSLLVLIGL  166 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHH-H--------HHHHCBTTBG-GGSCHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHHhh-H--------HHHhhhcccc-ccccHHHHHHH-----------HHHHHHHHHHHHH
Confidence            466777788999999999988321 1        1111111110 00000001111           2344567778888


Q ss_pred             cccCChhHHHHHHHhCcHHHHHHhhCCC---CCcchhhHHHHHHHhhcCChhhHHHHHhcCCH---HHHHHHhccCCchh
Q 039940          219 LSDGTNDKIQAVIEAGVCGPLVELLGHP---SPSVLIPALRTVGNIVTGDDFQTQCVINHGAV---PYLLALLINNHKKS  292 (449)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~~  292 (449)
                      ++..++.....+...+.++.++..+.+.   ..+++..|+.+|..++..++...+.+.+.+..   ..+..+.++  +..
T Consensus       167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~  244 (684)
T 4gmo_A          167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDP  244 (684)
T ss_dssp             HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCT
T ss_pred             HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcH
Confidence            8888877777788888899999887543   34689999999999999999888888876543   333333333  334


Q ss_pred             HHHHHHHHHHHHh
Q 039940          293 IKKESCWTVSNIT  305 (449)
Q Consensus       293 v~~~a~~~l~nl~  305 (449)
                      .+..+++.+.|+.
T Consensus       245 ~~~la~giL~Ni~  257 (684)
T 4gmo_A          245 RAVMACGVLHNVF  257 (684)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHh
Confidence            5778899999874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.07  E-value=6.5e-10  Score=109.87  Aligned_cols=197  Identities=12%  Similarity=0.052  Sum_probs=150.8

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHH-HHhhCCCCCcchhhHHHHHHHhhcC-Chhh
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPL-VELLGHPSPSVLIPALRTVGNIVTG-DDFQ  268 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L-~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~  268 (449)
                      ..++|.+ ..|++++++.|..++++|++++. ++...+.+...+++..+ ..+|.+++.+++..|+++|+|++.. ..+.
T Consensus        34 ~~i~Pll-~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPVL-KDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHHH-HHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHHH-HHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            3455654 56899999999999999999996 45555667777888765 5678889999999999999999865 3567


Q ss_pred             HHHHHhcCCHHHHHHHhccCCc---------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH
Q 039940          269 TQCVINHGAVPYLLALLINNHK---------------------KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNL  327 (449)
Q Consensus       269 ~~~~~~~~~l~~L~~ll~~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~l  327 (449)
                      ...++..|+++.|..+++.. .                     ..+...++.+|.+++.++.+....+.+.+.++.|+..
T Consensus       112 ~~~l~~~~il~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~  190 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAV-LETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR  190 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHH-HHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhh-HHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence            77888999999999988542 1                     1244567788999998888888888888999999999


Q ss_pred             hhcC---chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChH---HHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          328 LQDA---EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK---PLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       328 l~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~---~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      +.+.   ..+++..|+.+|..++.. +.+..+.+.+.+...   .+..+.+. +...+..++++|.|++..
T Consensus       191 L~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          191 LISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVFTS  259 (684)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHhhh
Confidence            8543   468999999999999987 677888887766533   33333333 333466778888888754

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.05  E-value=1.1e-08  Score=91.00  Aligned_cols=279  Identities=13%  Similarity=0.067  Sum_probs=166.1

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ..++.++++++++|...+....-.+..++... ++..  +    ++..+.+=+++++ +-++-.|+++++++..  ++..
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~  137 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML  137 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence            44566778888999999988888888876542 2222  1    3667788889999 8999999999999987  4444


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      +.     +.+.+.+.+.+.++.+|..|+.+..++....|+..     .+++..+-+.+ .+.++.++.+|+.++..+...
T Consensus       138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence            43     35778889999999999999999999988776642     35777887877 778899999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCC-hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          182 KPQPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGT-NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      +        ...+..++..+...   ++-.+...++.+..++..+ +.     ....+++.+...|++.++.|..+|+++
T Consensus       207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred             c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            4        22444555544432   5777777777777776654 22     123677888889999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK  337 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  337 (449)
                      +..+......    .. ..++..+..++.++ ++.+|..|...|..++...|.....     .-..+.+++.+++..+..
T Consensus       274 I~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t  342 (355)
T 3tjz_B          274 IVNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT  342 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred             HHhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence            9887542221    11 23566677788888 9999999999999998766654322     334566778888777766


Q ss_pred             HHHHHHHH
Q 039940          338 EAAWAISN  345 (449)
Q Consensus       338 ~a~~aL~~  345 (449)
                      .|+.+|..
T Consensus       343 ~Aittllk  350 (355)
T 3tjz_B          343 LAITTLLK  350 (355)
T ss_dssp             --------
T ss_pred             HHHHHhhh
Confidence            66555543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.03  E-value=5.8e-08  Score=74.93  Aligned_cols=218  Identities=12%  Similarity=0.166  Sum_probs=171.3

Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhH
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDK  226 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~  226 (449)
                      +..++..++..| ++.--.++.+|+..+.+++...|    ......+..|+-+++ +...........+++.++...|+.
T Consensus        30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            445677888888 66667899999999999998864    344566777777765 456777788889999999888876


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          227 IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       227 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      .+     +++|.+..-..-+++.++.....+|..++..++....     +++.-+..++.++ +..-+..|...++.+..
T Consensus       105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred             HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence            55     5678888888888999999999999999998887654     4566789999988 87778888888887765


Q ss_pred             CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 039940          307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGL  386 (449)
Q Consensus       307 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l  386 (449)
                      ......     ...+|.|..+|.+.+.-||..|..+|.+++.. ++..++.      +...+.-+++.+..+...+-.+|
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence            554432     24789999999999999999999999999997 5665553      33445557778888999999999


Q ss_pred             HHHHHhh
Q 039940          387 ENILKVG  393 (449)
Q Consensus       387 ~~l~~~~  393 (449)
                      ..+.-..
T Consensus       242 ~rl~l~e  248 (253)
T 2db0_A          242 SRLLLLE  248 (253)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            8887554

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.98  E-value=1.6e-08  Score=89.92  Aligned_cols=277  Identities=14%  Similarity=0.090  Sum_probs=167.4

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChh
Q 039940          109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFD  188 (449)
Q Consensus       109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~  188 (449)
                      +...+++++.+++..++..+.-.+.+++...++   .++   ++..+.+-+ +++++-++..|+.+++++....      
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~------  135 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TGKEDSYRGPAVRALCQITDST------  135 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTT------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHH------
Confidence            356678899999999999999889888766433   222   566777878 7788999999999999997764      


Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh
Q 039940          189 QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  268 (449)
Q Consensus       189 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~  268 (449)
                      ..+.+.+.+.+.+.+.++.++..|+.+...+....++..+     ++++.+.+++.+.++.+...|+.++..+...+.. 
T Consensus       136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-  209 (355)
T 3tjz_B          136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-  209 (355)
T ss_dssp             THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-
Confidence            4567888899999999999999999999999988876543     7899999999999999999999999998875432 


Q ss_pred             HHHHHhcCCHHHHHHHhccCC--chhHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940          269 TQCVINHGAVPYLLALLINNH--KKSIKKESCWTVSNITAGN-RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN  345 (449)
Q Consensus       269 ~~~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~  345 (449)
                              .+..++..+....  ++..+......++.++..+ +.     ....+++.+...+++.++.|.-+|+.++..
T Consensus       210 --------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~  276 (355)
T 3tjz_B          210 --------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVN  276 (355)
T ss_dssp             --------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC
T ss_pred             --------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence                    2333444443321  3444444444444444333 22     123566777778888899999999999999


Q ss_pred             hhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH
Q 039940          346 ATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL  425 (449)
Q Consensus       346 l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  425 (449)
                      +.... ...     -..++..|..++.++++.++..++..|..+....+.                .+.++  -..++.+
T Consensus       277 l~~~~-~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~----------------~v~~~--n~~ie~l  332 (355)
T 3tjz_B          277 LPGCS-AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS----------------AVTAC--NLDLENL  332 (355)
T ss_dssp             -----------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred             ccCCC-HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH----------------HHHHH--HHHHHHH
Confidence            86521 111     123677888889999999999999999988876543                22222  2456778


Q ss_pred             hcCCCHHHHHHHHHHH
Q 039940          426 KSHGNNGIREKAVTIL  441 (449)
Q Consensus       426 ~~~~~~~i~~~a~~~i  441 (449)
                      ..++|-.|...|+..+
T Consensus       333 i~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          333 VTDANRSIATLAITTL  348 (355)
T ss_dssp             ----------------
T ss_pred             ccCCcHhHHHHHHHHh
Confidence            8888888877776543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.95  E-value=5.7e-07  Score=81.78  Aligned_cols=322  Identities=11%  Similarity=0.142  Sum_probs=197.8

Q ss_pred             hCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCC---chhhhHhhcCC-HHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          106 DHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSP---GCRNLVLHEEA-LIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       106 ~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~-i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      +..+...++.+|.. .+.++.+..+..+.-+...+|   .....+.+... ...+........+.-.+..++.++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            34577889998874 678899999999999988877   33233333222 22233333233445555666666666665


Q ss_pred             CCCCCChhhhhchHH--HHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHh--CcHHHHHHhhC----CC-----
Q 039940          181 GKPQPPFDQVRPVLP--ALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEA--GVCGPLVELLG----HP-----  246 (449)
Q Consensus       181 ~~~~~~~~~~~~~l~--~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~ll~----~~-----  246 (449)
                      ..+. ........+.  -+...+.+ ++.+.+.-++.++..+...+..+ ..+.+.  +.++.++.++.    +.     
T Consensus       155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            4422 3333344444  44455554 23455556788888888665533 334433  23555543322    11     


Q ss_pred             --------CCcchhhHHHHHHHhhcCChhhHHHHHhcCCH--HHHHHHhccCCchhHHHHHHHHHHHHhcCC----HHHH
Q 039940          247 --------SPSVLIPALRTVGNIVTGDDFQTQCVINHGAV--PYLLALLINNHKKSIKKESCWTVSNITAGN----RKQI  312 (449)
Q Consensus       247 --------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~----~~~~  312 (449)
                              ...++..++.|++-++.. ++..+.+...++.  +.|+.+++.....++-+-+..++.|+....    ....
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                    234578889999988876 4555666655543  567777876657889999999999998754    2223


Q ss_pred             HH-HHHCCChHHHHHHhhcC---chhHHHHHHHHHHHhhcc----------------C----CHHHH-HHHHH-------
Q 039940          313 QA-VIDAGLIVPLVNLLQDA---EFDIKKEAAWAISNATKA----------------G----TQEQI-KYLVR-------  360 (449)
Q Consensus       313 ~~-l~~~~~~~~L~~ll~~~---~~~v~~~a~~aL~~l~~~----------------~----~~~~~-~~l~~-------  360 (449)
                      .. ++..++++ ++..|...   |+++.+..-.....+-..                |    +|-+. ..|+.       
T Consensus       312 ~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            32 33334444 55555443   555554332222211110                0    11111 12222       


Q ss_pred             -c--CChHHHHhhccC----------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc
Q 039940          361 -E--GCIKPLCDLLLC----------ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS  427 (449)
Q Consensus       361 -~--~~~~~L~~ll~~----------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  427 (449)
                       +  .+++.|+.++++          .|+.+...|+.=+..+++..+..             ...+.+.|+.+.+.+|+.
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~  457 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLN  457 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTS
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhc
Confidence             1  247788888873          36778888999999999887754             567789999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 039940          428 HGNNGIREKAVTILETY  444 (449)
Q Consensus       428 ~~~~~i~~~a~~~i~~~  444 (449)
                      |+|++|+..|...++++
T Consensus       458 h~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          458 HSDSRVKYEALKATQAI  474 (480)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.94  E-value=6.1e-09  Score=89.28  Aligned_cols=187  Identities=13%  Similarity=0.156  Sum_probs=142.7

Q ss_pred             hHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhh
Q 039940          110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQ  189 (449)
Q Consensus       110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  189 (449)
                      -+.+.+.+++.++..|..++..|..++...+...... -...++.+...+.++.+..++..++.++..++......-...
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3568888899999999999999999986533221100 113455666666347889999999999999997643222344


Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC-hh-
Q 039940          190 VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD-DF-  267 (449)
Q Consensus       190 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~-  267 (449)
                      ...++|.++..+.+.++.++..+..++..+....+  ..     .+++.+...+++.++.++..++.+++.+.... +. 
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            57889999999999999999999999999986543  11     36788899999999999999999999965442 22 


Q ss_pred             hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      .....+ ..+++.+..++.+. ++++|..|..+++.++.
T Consensus       169 ~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            112222 25899999999988 99999999999999975

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.89  E-value=5.9e-07  Score=89.05  Aligned_cols=271  Identities=13%  Similarity=0.107  Sum_probs=185.1

Q ss_pred             CHHHHHHhhc---CCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC--------hHHHHHHHHHHHH
Q 039940           66 IVPRFVEFLL---REDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS--------DDVREQAVWALGN  134 (449)
Q Consensus        66 ~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--------~~~~~~a~~~L~~  134 (449)
                      ++..|-..|.   +++ +.++.-|+.+|+.+..+...        .++..|...+.+++        +.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3555666665   445 78999999999999885432        13677777776544        6788889999998


Q ss_pred             HhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHH
Q 039940          135 IVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVC  213 (449)
Q Consensus       135 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~  213 (449)
                      ...++..       ..++..|...+ .+.+..+.+.++.++..+..+..+      ..++..|+..+ .+.+..+++.+.
T Consensus       464 a~~GS~~-------eev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN-------IEVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC-------HHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC-------HHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            7654421       12345677777 444455667888888876554321      23344444443 355788999999


Q ss_pred             HHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh
Q 039940          214 WTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS  292 (449)
Q Consensus       214 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  292 (449)
                      .+|+.+..+.++.         ++.++..|. +.++.+|..++.+++.-..+.....       .++.|+..+.+..+..
T Consensus       530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHH
Confidence            9999887776643         344555544 4677888888888876655533221       3555555554443788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHh-hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940          293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLL-QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL  371 (449)
Q Consensus       293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll  371 (449)
                      +|..|+.+|+.+..++++         .++.++..+ ++.++.+|..|+.+|+.+..+....        .+++.|..+.
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence            999999999998776642         455566544 5669999999999999998753211        1466777888


Q ss_pred             cCCCHHHHHHHHHHHHHHHHh
Q 039940          372 LCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       372 ~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      ++.|..|+..|+.+|..+..-
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTT
T ss_pred             cCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999877643

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.88  E-value=1.4e-07  Score=76.22  Aligned_cols=188  Identities=15%  Similarity=0.181  Sum_probs=150.5

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      +.+..++.+|+..|+.++..|+.+|.++.+.. +...+...-..+++.++.++.+.+ +.+...|+++|..+..+.|-..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence            46888999999999999999999999998764 333444445667999999999999 8999999999999998666555


Q ss_pred             HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      +.+..  ++.++..++.++++-++..++..++.+--.++ .      .+.+..+..++ .+.|..++..++.++.+++..
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~------~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-S------KLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-C------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-h------HHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            54443  46889999999999999999999999922221 1      23455777888 999999999999999999987


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          182 KPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       182 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                      ..+..  ...+++.-+-.+++++|+.++..++.++..+...+
T Consensus       181 S~D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          181 SADSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CSSCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cCCHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            53322  23466667788899999999999999999887653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.88  E-value=1e-08  Score=87.87  Aligned_cols=186  Identities=15%  Similarity=0.201  Sum_probs=142.7

Q ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940          154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIE  232 (449)
Q Consensus       154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  232 (449)
                      .+...+ ++.+...+..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-.........
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            466777 788899999999999999876322212223677889999995 889999999999999998543322222222


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHH
Q 039940          233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQ  311 (449)
Q Consensus       233 ~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~  311 (449)
                       .+++.++..+.+.+..+|..+..++..++....  .     ..+++.+...+++. ++.+|..++..|+.+... .++.
T Consensus        98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence             578999999999999999999999999986532  1     13678889999988 999999999999997653 3321


Q ss_pred             -HHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940          312 -IQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG  350 (449)
Q Consensus       312 -~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  350 (449)
                       ....+. .++|.+..++.+.++++|..|..++..++..-
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence             112222 48899999999999999999999999998753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.79  E-value=8.3e-08  Score=82.05  Aligned_cols=193  Identities=11%  Similarity=0.125  Sum_probs=142.3

Q ss_pred             HHHHhhCCCChHHHHHHHHHHHH-HhcCCCchhhhHhh-cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCCh-
Q 039940          112 IFVKLLASPSDDVREQAVWALGN-IVAHSPGCRNLVLH-EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPF-  187 (449)
Q Consensus       112 ~L~~~l~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~-  187 (449)
                      .+...+.+.++.-|..++..|.. ++.+.+.......+ ...+..+...+.++.+..++..++.++..++.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            46677889999999999999999 87554332210001 12355666667567889999999999999997654 3333 


Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHH-HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940          188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAV-IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD  266 (449)
Q Consensus       188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  266 (449)
                      .....++|.++..+.+..+.++..+..++..++...+.....- .+ .+++.++..+++.++.++..++.+|+.++....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            4667889999999998889999988888888775431100000 11 367788899999999999999999999986544


Q ss_pred             h---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          267 F---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       267 ~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      .   .....+...+++.+.+++.+. ++.+|..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            2   222233357999999999999 99999999999999874

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.72  E-value=8.7e-08  Score=81.91  Aligned_cols=192  Identities=10%  Similarity=0.084  Sum_probs=140.1

Q ss_pred             HHHHHcccccHHHHHHHHHHHHH-hhcCCCCCC--hhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCCh-hHHH-
Q 039940          155 LLAQLNEHARLSMLRIGTWTLSN-LCKGKPQPP--FDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTN-DKIQ-  228 (449)
Q Consensus       155 l~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~-~~~~-  228 (449)
                      +...+ .+.+..-+..++..+.. ++.+.+...  ......++..+...+ ...+..++..++.+++.++.+-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            44555 67888999999999999 875533322  222356788889999 68899999999999999985322 1111 


Q ss_pred             HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940          229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN  308 (449)
Q Consensus       229 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  308 (449)
                      .... .+++.++..+++....++..+..++..++...+.......-..+++.|...++++ ++.+|..++.+|+.++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            1222 4789999999998889999988888888764321110000013677888999999 9999999999999998633


Q ss_pred             H---HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          309 R---KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       309 ~---~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      +   ......+...++|.+..++.+.++++|..|..++..++..
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            2   3333444247999999999999999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.67  E-value=4.8e-06  Score=83.64  Aligned_cols=315  Identities=13%  Similarity=0.146  Sum_probs=216.0

Q ss_pred             CCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 039940           13 PSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTN   92 (449)
Q Consensus        13 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~   92 (449)
                      ++++.......+..+++.+...+..-+..|+..+..+..+.....   ....+++..+.+.+.+.. ..  +.|+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~   78 (986)
T 2iw3_A            5 HHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAH   78 (986)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHH
T ss_pred             ccccccchHHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHH
Confidence            345666667777788888876555556778888888876431111   111256778888888765 23  889999999


Q ss_pred             hcCCChh--hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940           93 IASGTSV--NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRI  170 (449)
Q Consensus        93 l~~~~~~--~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~  170 (449)
                      ++.....  ..+.+. .+.++.++....+....++..|-.+...+...-+...  +  ...++.++..+.....-..+..
T Consensus        79 ~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~  153 (986)
T 2iw3_A           79 IANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIA  153 (986)
T ss_dssp             HTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHH
Confidence            9953311  222222 2678999999998889999998888887765433221  1  3468889999955556888999


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcc
Q 039940          171 GTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV  250 (449)
Q Consensus       171 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v  250 (449)
                      ++.++..++...+.........++|.+...+.+..+++...+..++..+|..-++. +  + ..++|.|+..+.+++.  
T Consensus       154 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~-d--~-~~~~~~~~~~~~~p~~--  227 (986)
T 2iw3_A          154 ILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK-D--I-ERFIPSLIQCIADPTE--  227 (986)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT-T--T-GGGHHHHHHHHHCTTH--
T ss_pred             HHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc-c--h-hhhHHHHHHHhcChhh--
Confidence            99999999987644444455889999999999999999998888888777421110 0  1 1578999999988743  


Q ss_pred             hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHh
Q 039940          251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLL  328 (449)
Q Consensus       251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll  328 (449)
                      ...++..|+.-+....-....+  +=.+|.|..-|... ...+++.++-++.|+|.  .+|.....++. ..+|.+....
T Consensus       228 ~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~  303 (986)
T 2iw3_A          228 VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNF  303 (986)
T ss_dssp             HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHT
T ss_pred             hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHh
Confidence            4445555544332211111111  11467777778777 78899999999999997  77777766654 5778887776


Q ss_pred             hcC-chhHHHHHHHHHHHhhc
Q 039940          329 QDA-EFDIKKEAAWAISNATK  348 (449)
Q Consensus       329 ~~~-~~~v~~~a~~aL~~l~~  348 (449)
                      ..- +|++|+.|..|+..+..
T Consensus       304 ~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          304 ATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHH
Confidence            554 89999999988888844

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.61  E-value=2.4e-05  Score=71.27  Aligned_cols=324  Identities=13%  Similarity=0.097  Sum_probs=196.5

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh---hhhHHHHhCCCh-HHHHH-hhCCCChHHHHHHHHHHHHHhcC
Q 039940           64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS---VNTKVLIDHGAV-PIFVK-LLASPSDDVREQAVWALGNIVAH  138 (449)
Q Consensus        64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-~l~~~~~~~~~~a~~~L~~l~~~  138 (449)
                      ......++.+|......++....+..+..+...++   .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            45678899999877668999999999999998766   444444444322 22333 33444455556666666666543


Q ss_pred             CCchhhhHhhcCCHH--HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhcC-----------
Q 039940          139 SPGCRNLVLHEEALI--PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQ--VRPVLPALAQLIHL-----------  203 (449)
Q Consensus       139 ~~~~~~~~~~~~~i~--~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~-----------  203 (449)
                      .+...+..  ...+.  .++..+.+..+...+..++.++..|.+.+..+....  ....+|.++.++..           
T Consensus       156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            33311111  11222  355555332334456678888888887753332221  12345555443321           


Q ss_pred             ----C--CHHHHHHHHHHHHHcccCChhHHHHHHHhCcH--HHHHHhhCC-CCCcchhhHHHHHHHhhcCCh----hhHH
Q 039940          204 ----D--DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVC--GPLVELLGH-PSPSVLIPALRTVGNIVTGDD----FQTQ  270 (449)
Q Consensus       204 ----~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~----~~~~  270 (449)
                          +  ...++..++.|++-++...+ ..+.+...++.  ..|+..++. ..+.+..-++.++.|+.....    ....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                1  35567889999998886654 44545554433  455665655 456788889999999987652    2222


Q ss_pred             -HHHhcCCHHHHHHHhccCC--chhHHHHHHHHHHHHhc-----C-CHHHHH----------------HHHH--------
Q 039940          271 -CVINHGAVPYLLALLINNH--KKSIKKESCWTVSNITA-----G-NRKQIQ----------------AVID--------  317 (449)
Q Consensus       271 -~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~l~nl~~-----~-~~~~~~----------------~l~~--------  317 (449)
                       .++..++++ ++..|....  |+++....-+..-.+-.     . -++...                .++.        
T Consensus       313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             333344544 555554321  55554443332222211     0 011111                1221        


Q ss_pred             --CCChHHHHHHhhc----------CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940          318 --AGLIVPLVNLLQD----------AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG  385 (449)
Q Consensus       318 --~~~~~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~  385 (449)
                        ..++..|+++|..          .++.+...||.=++.++.+ -|+.+..+-+-|+=+.++.++.++|++|+..|+.+
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a  470 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  470 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence              1257889999973          3788999999999999998 46667766678999999999999999999999999


Q ss_pred             HHHHHHh
Q 039940          386 LENILKV  392 (449)
Q Consensus       386 l~~l~~~  392 (449)
                      +..++..
T Consensus       471 vQklm~~  477 (480)
T 1ho8_A          471 TQAIIGY  477 (480)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998854

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.58  E-value=1e-08  Score=78.43  Aligned_cols=120  Identities=18%  Similarity=0.181  Sum_probs=91.3

Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 039940          233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI  312 (449)
Q Consensus       233 ~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~  312 (449)
                      ...++.+..+|+++++.+|..|+++|+.+...            .++.|..+++++ ++.+|..|+++|+++..  +.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence            35678899999999999999999998766321            258899999988 99999999999999842  22  


Q ss_pred             HHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 039940          313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLEN  388 (449)
Q Consensus       313 ~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~  388 (449)
                             .++.|+..+.++++.||..|+++|.++..   ++         .++.|..+++++++.++..+..+|.+
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   47788889999999999999999999852   22         46778888888999999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.56  E-value=1.8e-08  Score=77.08  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=93.3

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940           64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      ...++.+..+|++++ +.++..|+++|+++..            ..++.|+.++.++++.+|..++++|+++..      
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            456788999999988 7999999998887653            126899999999999999999999998842      


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNL  219 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  219 (449)
                           ...++.++..+ +++++.++..++++|..+..          ...++.|..+++++++.++..+.++|..+
T Consensus        72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 12477888888 78899999999999999863          36789999999989999999999988754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.56  E-value=0.00012  Score=75.83  Aligned_cols=349  Identities=9%  Similarity=-0.004  Sum_probs=198.4

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh--
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS--   98 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--   98 (449)
                      ...=..+++.+.++...++...+.++..++.......+     .++++.|++.+++++ ...+..++.++..++....  
T Consensus        84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~  157 (960)
T 1wa5_C           84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPL  157 (960)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence            33345666776666688888888889888765422223     456899999998887 6888999999999987321  


Q ss_pred             ----hhhHHH---HhCCChHHHHH-------hhCCCCh---------HHHHHHHHHHHHHhcC-CCchhhhHhhcCCHHH
Q 039940           99 ----VNTKVL---IDHGAVPIFVK-------LLASPSD---------DVREQAVWALGNIVAH-SPGCRNLVLHEEALIP  154 (449)
Q Consensus        99 ----~~~~~~---~~~~~i~~L~~-------~l~~~~~---------~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~  154 (449)
                          +.+..+   .. ...+.++.       .+.++..         ++...++.+++++... .|..-...+ ...++.
T Consensus       158 ~~~~~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~  235 (960)
T 1wa5_C          158 FRSDELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGI  235 (960)
T ss_dssp             CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHH
T ss_pred             hcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHH
Confidence                222211   11 12333333       2443221         2333466777766532 232211000 112333


Q ss_pred             HHHHHccc-----cc---------HHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----CCCHHHHHHHHHH
Q 039940          155 LLAQLNEH-----AR---------LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-----LDDEEVLRNVCWT  215 (449)
Q Consensus       155 l~~~l~~~-----~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~~~~~~~~~  215 (449)
                      +...+...     .+         ..++..++.++..+....+..-......+++.....+.     ..+..++..++..
T Consensus       236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f  315 (960)
T 1wa5_C          236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF  315 (960)
T ss_dssp             HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred             HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            44444221     11         24677788888877755422111223455566666554     3357888888888


Q ss_pred             HHHcccCChhHHH----HHHHhCcH-HHHHHhhCC-----------------------CCCcchhhHHHHHHHhhcCChh
Q 039940          216 LSNLSDGTNDKIQ----AVIEAGVC-GPLVELLGH-----------------------PSPSVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       216 l~~l~~~~~~~~~----~~~~~~~~-~~L~~ll~~-----------------------~~~~v~~~a~~~l~~l~~~~~~  267 (449)
                      +..++........    ..+. .++ ..++..+.-                       .....|..|..+|..++...++
T Consensus       316 l~~~~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~  394 (960)
T 1wa5_C          316 LTAVTRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV  394 (960)
T ss_dssp             HHHHHTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHhCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch
Confidence            8887754321100    0111 122 233333321                       1124667777888777765432


Q ss_pred             hHHHHHhcCCHHHHHHHhc------cCCchhHHHHHHHHHHHHhcC---CHH---------HHHHHHHCCChHHHHHHhh
Q 039940          268 QTQCVINHGAVPYLLALLI------NNHKKSIKKESCWTVSNITAG---NRK---------QIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       268 ~~~~~~~~~~l~~L~~ll~------~~~~~~v~~~a~~~l~nl~~~---~~~---------~~~~l~~~~~~~~L~~ll~  329 (449)
                      .   +. ..+++.+...+.      +. +...|..|..+++.++.+   ...         ....++.    ..++..+.
T Consensus       395 ~---v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~  465 (960)
T 1wa5_C          395 L---VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLT  465 (960)
T ss_dssp             H---HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHH
T ss_pred             h---HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhc
Confidence            1   11 123445555554      44 677888999999999752   110         1112211    12333345


Q ss_pred             cC---chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          330 DA---EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       330 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      +.   ++.+|..|+|+++.++..-.++....     +++.++..+.+.++.++..|+.+|.++++.
T Consensus       466 ~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          466 SNNIPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            55   88999999999999988654443222     677888888888899999999999999974

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.51  E-value=3e-05  Score=80.25  Aligned_cols=389  Identities=9%  Similarity=0.024  Sum_probs=216.4

Q ss_pred             hhcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCC---------CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 039940           21 LEILPAMVAGVWS--DDNSMQLEAATQFRRLLSIER---------SLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWV   89 (449)
Q Consensus        21 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~   89 (449)
                      .+....+.+.+.+  .+..+|..|+..|.+.....-         .+..+..++.    .++..+.++. ..++..++.+
T Consensus        34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~  108 (960)
T 1wa5_C           34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEA  108 (960)
T ss_dssp             TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHH
Confidence            3455567777644  467899999999999875421         1112223333    3455555556 7899999999


Q ss_pred             HHHhcCC-ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC------chhhhHh--hcCCHHHHHHH--
Q 039940           90 LTNIASG-TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP------GCRNLVL--HEEALIPLLAQ--  158 (449)
Q Consensus        90 L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~i~~l~~~--  158 (449)
                      ++.++.. .++..     .+.++.|++.+++++...+..++.++..++....      +.+..+.  -....++++..  
T Consensus       109 ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~  183 (960)
T 1wa5_C          109 ISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLK  183 (960)
T ss_dssp             HHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998862 12111     3578999999988888889999999999986321      1111110  01123333333  


Q ss_pred             -----Hcccc-c-------HHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCC------C---------HHHH
Q 039940          159 -----LNEHA-R-------LSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLD------D---------EEVL  209 (449)
Q Consensus       159 -----l~~~~-~-------~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~~~  209 (449)
                           +.+.. +       .++...++.++.++.... +..........++.+..++...      +         ..++
T Consensus       184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk  263 (960)
T 1wa5_C          184 TVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVK  263 (960)
T ss_dssp             HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHH
Confidence                 22211 1       133344666777666443 2211122244555656655321      1         2467


Q ss_pred             HHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-----CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHH----
Q 039940          210 RNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPY----  280 (449)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----  280 (449)
                      ..++.++..+....++.....+. .+++.....+.     .....++..++..+..++.... ....+...+.++.    
T Consensus       264 ~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~~~~~~~~~l~~li~~  341 (960)
T 1wa5_C          264 SSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YFEIFNNESAMNNITEQ  341 (960)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HHGGGCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HHHHHcCchHHHHHHHH
Confidence            78888888877655543332222 45555666553     2345677888888887765321 1111000012222    


Q ss_pred             -HHHHhcc----------------------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh------cC
Q 039940          281 -LLALLIN----------------------NHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ------DA  331 (449)
Q Consensus       281 -L~~ll~~----------------------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~------~~  331 (449)
                       ++..+.-                      ......|..|..+|..++...++..   +. .+++.+...+.      +.
T Consensus       342 ~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~  417 (960)
T 1wa5_C          342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSK  417 (960)
T ss_dssp             THHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----
T ss_pred             HhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcch
Confidence             2223210                      1012467778888888876443221   11 13344444454      34


Q ss_pred             chhHHHHHHHHHHHhhccCC-HH----------HHHHHHHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhhhhhh
Q 039940          332 EFDIKKEAAWAISNATKAGT-QE----------QIKYLVREGCIKPLCDLLLCA---DPEIVTVCLKGLENILKVGEAKK  397 (449)
Q Consensus       332 ~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~~~~L~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~  397 (449)
                      +...|+.|+.+++.++..+. .+          ....++..-+++    .+.+.   ++.++..+++++..+......  
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--  491 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLTK--  491 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSCH--
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCCH--
Confidence            67889999999999986421 00          122222111233    33444   788999999999988865321  


Q ss_pred             ccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          398 NRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                                .+...     .++.+.+...++++.++..|...+.++..
T Consensus       492 ----------~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          492 ----------AQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILT  525 (960)
T ss_dssp             ----------HHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ----------HHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence                      11222     23444445556789999999999998765

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.43  E-value=7.2e-06  Score=70.89  Aligned_cols=187  Identities=13%  Similarity=0.090  Sum_probs=142.0

Q ss_pred             HHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HC
Q 039940          240 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI-DA  318 (449)
Q Consensus       240 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~  318 (449)
                      +..|.+++.+.+..+++-|..+...+......++..+++..|+.+.... +...+..+..++.++..+. ....-++ ..
T Consensus       124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~  201 (339)
T 3dad_A          124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFV-DGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSH-HHHHHHHHCH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcc-ccccchhCCH
Confidence            3444456667788899999986666688889999999999999999998 9999999999999998753 3343444 34


Q ss_pred             CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH--------cC--ChHHHHhhcc---CCCHHHHHHHHHH
Q 039940          319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR--------EG--CIKPLCDLLL---CADPEIVTVCLKG  385 (449)
Q Consensus       319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~--~~~~L~~ll~---~~~~~~~~~~~~~  385 (449)
                      .++..+..++.+.+..|.+.|+..|..++...+ .....+.+        .|  .+..|+..++   +.|.+++..++..
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL  280 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL  280 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            578888999988889999999999999988742 12222111        22  3778999997   6789999999999


Q ss_pred             HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC--CHHHHHH
Q 039940          386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG--NNGIREK  436 (449)
Q Consensus       386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~i~~~  436 (449)
                      +..++...+....       ...+...+.+.|.-..+...+...  +++++++
T Consensus       281 IN~lL~~apd~d~-------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          281 INKTLAALPDQDS-------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHCSSHHH-------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHhcCCChhH-------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            9999988664321       235778888889888888866655  6666554

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.42  E-value=0.00017  Score=74.13  Aligned_cols=341  Identities=12%  Similarity=0.090  Sum_probs=187.5

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHhcCC-C--h--hhhHHHHh
Q 039940           33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFV-EFLLREDYPRLQFEAAWVLTNIASG-T--S--VNTKVLID  106 (449)
Q Consensus        33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~-~--~--~~~~~~~~  106 (449)
                      ++++++...++.++....+   --+...+.+.+.++.++ .++.+   ++.+..|+.+|..+... .  +  ..-..+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            3556777777888887764   34566778889999999 88853   78999999999999872 2  2  11111110


Q ss_pred             --CCChHHH--------------HHhhCCCChHHHHHHHHHHHHHhcCC-------CchhhhHhhcCCHHHHHHHHcccc
Q 039940          107 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNIVAHS-------PGCRNLVLHEEALIPLLAQLNEHA  163 (449)
Q Consensus       107 --~~~i~~L--------------~~~l~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~  163 (449)
                        .+.++.+              .......+.+.....+.++..+....       +..+..+  ..++..++..- ...
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l--~~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH--HHHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH--HHHHHHHHHhh-CCC
Confidence              0111111              11112234666666666665554321       1111111  01122333322 456


Q ss_pred             cHHHHHHHHHHHHHhhcCCCC--CChhhh----hchHHHHHHhhcCCC--------------------HH-----HHHHH
Q 039940          164 RLSMLRIGTWTLSNLCKGKPQ--PPFDQV----RPVLPALAQLIHLDD--------------------EE-----VLRNV  212 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~~--~~~~~~----~~~l~~l~~ll~~~~--------------------~~-----~~~~~  212 (449)
                      +.++...++.....+..+...  ......    ..+++.++.-+.-+.                    .+     ..+.+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            788888887776666653211  112222    344455554443221                    00     11123


Q ss_pred             HHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-
Q 039940          213 CWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-  289 (449)
Q Consensus       213 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-  289 (449)
                      +..+.++..  ++..+     -+++.+...+.+  .++..++.++++++.++.+..+....-.-..+++.|+.++.+.. 
T Consensus       437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence            322322221  11111     123444444444  57889999999999998775443222222347788888886411 


Q ss_pred             ---chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH-------
Q 039940          290 ---KKSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK-------  356 (449)
Q Consensus       290 ---~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-------  356 (449)
                         ...++..++|+++.++.   ..++...     .++..|+..+.++++.++..|++++.+++..+......       
T Consensus       510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~  584 (1023)
T 4hat_C          510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE  584 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence               34566778899998875   2333322     24556777777778899999999999999854332210       


Q ss_pred             HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          357 YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       357 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+++ ..+..+......-+++-+..+.+++..++...+.
T Consensus       585 p~~~-~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          585 PFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             CHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             hhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence            0011 1233334444445666677888888888876543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.39  E-value=3.2e-05  Score=77.80  Aligned_cols=299  Identities=15%  Similarity=0.171  Sum_probs=206.1

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC---chhhhH
Q 039940           70 FVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP---GCRNLV  146 (449)
Q Consensus        70 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~  146 (449)
                      +++-+...+ ..-+..++..+.++..+.....  ....+++..+.+.+.+....  +.|+.++..++....   .....+
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            444455543 3334566667777665321111  11125677777777754333  999999999985432   222233


Q ss_pred             hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChh
Q 039940          147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTND  225 (449)
Q Consensus       147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~  225 (449)
                      .  +.++.++..+ .+....|+..|-.+...+....+.   .....++|.+...+.+. ....+..++.++..++...++
T Consensus        94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            2  5678888887 566778998888888887776432   22367899999988765 689999999999999976665


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC--ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940          226 KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG--DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN  303 (449)
Q Consensus       226 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  303 (449)
                      .....+. +++|.+...+.+..+++...|..++..+|..  +.+.      ...+|.|++.+.++ +.  .-++...|+.
T Consensus       168 ~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~  237 (986)
T 2iw3_A          168 QVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA  237 (986)
T ss_dssp             HHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred             HHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence            4443332 6899999999999999999999999888753  2222      24789999999877 33  3344444444


Q ss_pred             Hhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC-CHHHHHHHHHcCChHHHHhhccC-CCHHH
Q 039940          304 ITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG-TQEQIKYLVREGCIKPLCDLLLC-ADPEI  378 (449)
Q Consensus       304 l~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~~~~L~~ll~~-~~~~~  378 (449)
                      -+.   -..... .+    ++|.|.+-|......+++.++-.+.||+.-- ++.....|+. .+++.+....+. .+|++
T Consensus       238 ~tfv~~v~~~~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          238 TTFVAEVTPATL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             CCCCSCCCHHHH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred             CeeEeeecchhH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence            332   122211 11    5788888888889999999999999999863 5666666554 477777777665 69999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 039940          379 VTVCLKGLENILKVGEA  395 (449)
Q Consensus       379 ~~~~~~~l~~l~~~~~~  395 (449)
                      |+.+-.++..|.+....
T Consensus       312 r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          312 REVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999999887665

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.35  E-value=7e-05  Score=77.70  Aligned_cols=393  Identities=11%  Similarity=0.057  Sum_probs=202.2

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHh-------hcCCCC--HHHHHHHHHHHHHhcCCChhhh---
Q 039940           34 DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEF-------LLREDY--PRLQFEAAWVLTNIASGTSVNT---  101 (449)
Q Consensus        34 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-------l~~~~~--~~~~~~a~~~L~~l~~~~~~~~---  101 (449)
                      ++++.+..|+.+|..+............+ ..+++.++.+       +...+.  ++.....++.+..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778889999999998753111111111 1123333332       233331  2666666777776664222111   


Q ss_pred             ---------HHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcC---------CCchhhhHh--hcCCHHHHH
Q 039940          102 ---------KVLIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAH---------SPGCRNLVL--HEEALIPLL  156 (449)
Q Consensus       102 ---------~~~~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~--~~~~i~~l~  156 (449)
                               ..+  ...++.++.+...     .++++...+++.+..++..         .+.......  -...++.++
T Consensus       335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     111  1445666665533     4788999999998888641         111111110  012334444


Q ss_pred             HHHccccc--------------HHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-----CCHHHHHHHHHHHH
Q 039940          157 AQLNEHAR--------------LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-----DDEEVLRNVCWTLS  217 (449)
Q Consensus       157 ~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~~~~~~~~~l~  217 (449)
                      ..+....+              .+.+..+..++..++...+   ......+++.+...+.+     .+...++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44421111              1355666777777775433   23334455555555543     57788999999999


Q ss_pred             HcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940          218 NLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE  296 (449)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  296 (449)
                      .++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .+ ..+++.++..+.    +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~----~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGLN----SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHHH----SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHhC----hHHHHH
Confidence            998765432221111 23332222221 34778999999999998753211111 11 134556666662    568999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCC-HHHHHHHHH--cCChHHHHhhc
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGT-QEQIKYLVR--EGCIKPLCDLL  371 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~~~~L~~ll  371 (449)
                      |++++.+++...........+ +++..+..++..+  +.+.+..+..+++.++.... .+...++..  ...+..+...+
T Consensus       563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~  641 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC  641 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999755544433333 4677777777763  57889999999999987532 233333222  11233333333


Q ss_pred             cCC--CHHHH---HHHHHHHHHHHHhhhhhhccC--CCCCcccHHHHHHHhcchHHHHHHHhc-C-CCHHHHHHHHHHHH
Q 039940          372 LCA--DPEIV---TVCLKGLENILKVGEAKKNRG--STIGDVNQYARLVEGAEGFKKIEDLKS-H-GNNGIREKAVTILE  442 (449)
Q Consensus       372 ~~~--~~~~~---~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~~~~i~~~a~~~i~  442 (449)
                      +..  +++-+   ..+++.|..++..........  ..+ ....+...+  ...++.+..+.. . .++++.+.+..++.
T Consensus       642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~-~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~  718 (971)
T 2x1g_F          642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQP-IVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMK  718 (971)
T ss_dssp             TC---CHHHHHHHHHHHHHHHHHHHHHTC--------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccccc-CCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            333  33333   345555555554332110000  000 001112222  223555555532 2 36788888887776


Q ss_pred             H
Q 039940          443 T  443 (449)
Q Consensus       443 ~  443 (449)
                      +
T Consensus       719 ~  719 (971)
T 2x1g_F          719 H  719 (971)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.29  E-value=1.8e-05  Score=68.43  Aligned_cols=186  Identities=16%  Similarity=0.124  Sum_probs=135.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940          194 LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI  273 (449)
Q Consensus       194 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  273 (449)
                      ...++.-|.+.+.+.++.++.-|..+...+......+++.+++..|+......+..++..++.++.++..+.+.....+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            34455666677888899999999986656666778899999999999999999999999999999999887444333333


Q ss_pred             hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH----------CCChHHHHHHhh---cCchhHHHHHH
Q 039940          274 NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID----------AGLIVPLVNLLQ---DAEFDIKKEAA  340 (449)
Q Consensus       274 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----------~~~~~~L~~ll~---~~~~~v~~~a~  340 (449)
                      ....+..+..++.+. +..|.+.|...|-.++..++.....+.+          ...++.|+.+|.   ..+.+++..|+
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            567899999999987 8999999999999998644322222111          224889999997   56899999999


Q ss_pred             HHHHHhhccCC-HHHHH----HHHHcCChHHHHhhccCC--CHHHHH
Q 039940          341 WAISNATKAGT-QEQIK----YLVREGCIKPLCDLLLCA--DPEIVT  380 (449)
Q Consensus       341 ~aL~~l~~~~~-~~~~~----~l~~~~~~~~L~~ll~~~--~~~~~~  380 (449)
                      ..+..+....+ .+.+.    .+-+.|+-..+...++..  +++++.
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            88888777644 33233    333455555666667654  555443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.28  E-value=9.5e-05  Score=76.70  Aligned_cols=290  Identities=10%  Similarity=0.066  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHhcCCChh-hhHHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHH
Q 039940           82 LQFEAAWVLTNIASGTSV-NTKVLIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPL  155 (449)
Q Consensus        82 ~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l  155 (449)
                      .+..+..++..++...++ ....+     ++.+-..+.+     .+...++.++.+++.++.......     ...++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l  506 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence            445666677666653331 11111     2333333332     578899999999999986543221     1233444


Q ss_pred             HHHH---c-ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940          156 LAQL---N-EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI  231 (449)
Q Consensus       156 ~~~l---~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  231 (449)
                      +..+   . ++.++.++..++|+++.++..-.. .......+++.++..+.   +.++..+++++.++++..........
T Consensus       507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~  582 (971)
T 2x1g_F          507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA  582 (971)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH
Confidence            4433   2 134788999999999999875422 12456788888888882   78999999999999965543333222


Q ss_pred             HhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCCh-hhHHHHHhcCCHHHHH----HHhccCC-chhHHHHHHHHHHH
Q 039940          232 EAGVCGPLVELLGHP--SPSVLIPALRTVGNIVTGDD-FQTQCVINHGAVPYLL----ALLINNH-KKSIKKESCWTVSN  303 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~----~ll~~~~-~~~v~~~a~~~l~n  303 (449)
                      + .++..+..++..+  +.+.+..++.+++.++...+ +.....++ .+++.++    .++.... +...+.....++..
T Consensus       583 ~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~  660 (971)
T 2x1g_F          583 D-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNM  660 (971)
T ss_dssp             H-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            2 5667777777763  45678888889988876422 22222221 2333333    3333321 22233444444444


Q ss_pred             Hh---c--CC-----------HHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChH
Q 039940          304 IT---A--GN-----------RKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK  365 (449)
Q Consensus       304 l~---~--~~-----------~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~  365 (449)
                      ++   .  +.           ++....+ -..+++.+..++...  +..+.+.++++++.++..-..+...++-  ..++
T Consensus       661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~  737 (971)
T 2x1g_F          661 ISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCL  737 (971)
T ss_dssp             HHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHH
T ss_pred             HHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHH
Confidence            43   2  11           1111122 235788888887653  6799999999999977641111111111  1344


Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          366 PLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       366 ~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .|...+.....   ..+++.+..++...
T Consensus       738 ~l~~~~~~~~~---~~~l~l~~~~i~~~  762 (971)
T 2x1g_F          738 FIVASFQTRCC---APTLEISKTAIVMF  762 (971)
T ss_dssp             HHHHHCC--CC---HHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCc---hHHHHHHHHHHHHh
Confidence            44444444222   23666666666543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.25  E-value=0.0024  Score=66.76  Aligned_cols=358  Identities=10%  Similarity=0.101  Sum_probs=191.5

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhcc---CCCC--c--H-----HHHHH--cCCHHHHHHhhcCCCCHHHHHHHH
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSI---ERSL--P--I-----DEVIQ--AGIVPRFVEFLLREDYPRLQFEAA   87 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~---~~~~--~--~-----~~~~~--~~~i~~L~~ll~~~~~~~~~~~a~   87 (449)
                      +.++.+++.++ .++.....++..|..+...   ....  .  +     ..+..  ..+++.+...+.+....+++..++
T Consensus       138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL  216 (1049)
T 3m1i_C          138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL  216 (1049)
T ss_dssp             THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            56778888886 4444455555555544321   1011  0  0     11221  122333445555443378999999


Q ss_pred             HHHHHhcCCChhhhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCC--Cc---hhhhHhhcCCHHHHHHHH--
Q 039940           88 WVLTNIASGTSVNTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHS--PG---CRNLVLHEEALIPLLAQL--  159 (449)
Q Consensus        88 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~~~~i~~l~~~l--  159 (449)
                      .++.+...--+  ...+.+...++.+.+ ++  .+++++..|+.+|..+....  +.   ....+.  ..++.++..+  
T Consensus       217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~--~l~~~~l~~l~~  290 (1049)
T 3m1i_C          217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTV--LFFQNTLQQIAT  290 (1049)
T ss_dssp             HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHH--HHHHHHHHHHHH
Confidence            99998776322  233555677777773 44  37899999999999998653  21   111110  0111222211  


Q ss_pred             ---------------cccccHHHHHHHHHHHHHhhcCC------CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940          160 ---------------NEHARLSMLRIGTWTLSNLCKGK------PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN  218 (449)
Q Consensus       160 ---------------~~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  218 (449)
                                     ..+.+.+.....+..+..+....      +.........+++.++.+...++.++...++..+..
T Consensus       291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~  370 (1049)
T 3m1i_C          291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN  370 (1049)
T ss_dssp             HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                           01234455555555544332210      111122235667777777777788888888877776


Q ss_pred             ccc----C--ChhHHHHHHHhCcHHHHHHhhCCCCC----------------------cchhhHHHHHHHhhcCChhhHH
Q 039940          219 LSD----G--TNDKIQAVIEAGVCGPLVELLGHPSP----------------------SVLIPALRTVGNIVTGDDFQTQ  270 (449)
Q Consensus       219 l~~----~--~~~~~~~~~~~~~~~~L~~ll~~~~~----------------------~v~~~a~~~l~~l~~~~~~~~~  270 (449)
                      ++.    .  .......++. .+++.++..+..++.                      ..+..+..+|..++...+...-
T Consensus       371 l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l  449 (1049)
T 3m1i_C          371 LVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE  449 (1049)
T ss_dssp             HHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            664    1  1111121222 345566665543211                      0122344455555533222111


Q ss_pred             HHHhcCCHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHhh-----cCchhHHHHHHHHH
Q 039940          271 CVINHGAVPYLLALLIN-NHKKSIKKESCWTVSNITAGNRKQ-IQAVIDAGLIVPLVNLLQ-----DAEFDIKKEAAWAI  343 (449)
Q Consensus       271 ~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~~~~L~~ll~-----~~~~~v~~~a~~aL  343 (449)
                          .-+.+.+-..+.. ..+...+..++++++.++.+.... -..+. ..+++.+..+..     ++++.++..+++++
T Consensus       450 ----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l  524 (1049)
T 3m1i_C          450 ----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVV  524 (1049)
T ss_dssp             ----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence                1123444445543 226778899999999997643222 11211 124555555432     23455666788999


Q ss_pred             HHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          344 SNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       344 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +.++..- ..+-+.+.  .+++.|...+.+.++.++..|+.++.++++.+..
T Consensus       525 gry~~~~-~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          525 GQYPRFL-KAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HHCHHHH-HHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHH-HhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8776431 11112222  2677788888888999999999999999987653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.21  E-value=0.0005  Score=71.24  Aligned_cols=352  Identities=11%  Similarity=0.062  Sum_probs=185.5

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCc-HHH---HHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLP-IDE---VIQ--AGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~-~~~---~~~--~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~   95 (449)
                      ..++.+++.+  ++++.+..|+.++..+......+. ...   ++.  -+..+.+...+...+ .+.....++.+..++.
T Consensus       241 ~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~  317 (963)
T 2x19_B          241 ALIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGE  317 (963)
T ss_dssp             HHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Confidence            4455566666  357788889999999987531111 111   111  111222222334444 4555556666666654


Q ss_pred             CChhhh-------HHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCC--------CchhhhHhh--cCCHH
Q 039940           96 GTSVNT-------KVLIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAHS--------PGCRNLVLH--EEALI  153 (449)
Q Consensus        96 ~~~~~~-------~~~~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~  153 (449)
                      ..+...       ..+  ..+++.++.+...     .++.+...++..+..++...        +........  ...++
T Consensus       318 ~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  395 (963)
T 2x19_B          318 NHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVD  395 (963)
T ss_dssp             HHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            211110       111  1445666666654     35666777777777776421        111111100  01233


Q ss_pred             HHHHHHccccc--------------HHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----cCCCHHHHHHHHHH
Q 039940          154 PLLAQLNEHAR--------------LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI----HLDDEEVLRNVCWT  215 (449)
Q Consensus       154 ~l~~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll----~~~~~~~~~~~~~~  215 (449)
                      .++..+....+              .+.+..+..++..++...+   ......+++.+...+    .+.+...++.++++
T Consensus       396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~a  472 (963)
T 2x19_B          396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYG  472 (963)
T ss_dssp             HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            33443421111              1224445555655553321   122234444555555    45678889999999


Q ss_pred             HHHcccCChhHHHHHHHhCcHHHHHHhh---CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh
Q 039940          216 LSNLSDGTNDKIQAVIEAGVCGPLVELL---GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS  292 (449)
Q Consensus       216 l~~l~~~~~~~~~~~~~~~~~~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  292 (449)
                      ++.++..-....     ...++.++..+   ..+++.++..++++++.++..-.... ..+ ..+++.++..|.   ++.
T Consensus       473 l~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~---~~~  542 (963)
T 2x19_B          473 FQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALG---NPE  542 (963)
T ss_dssp             HHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTT---CGG
T ss_pred             HHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhC---Cch
Confidence            999987643211     12233333322   33567799999999999875422221 222 468888998885   368


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940          293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL  370 (449)
Q Consensus       293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l  370 (449)
                      ++..|++++.+++..........+ ..++..+..++...  +.+.+..+..+++.++.....+.....++ .+++.+...
T Consensus       543 V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~  620 (963)
T 2x19_B          543 LSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQ  620 (963)
T ss_dssp             GHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHH
Confidence            999999999999863322111111 12444555556542  56889999999999987544233322222 134444433


Q ss_pred             c----cCC-CHHHHH---HHHHHHHHHHHhh
Q 039940          371 L----LCA-DPEIVT---VCLKGLENILKVG  393 (449)
Q Consensus       371 l----~~~-~~~~~~---~~~~~l~~l~~~~  393 (449)
                      +    +.. +++.+.   ..+++|..+++..
T Consensus       621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~  651 (963)
T 2x19_B          621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTL  651 (963)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            3    222 444443   5666666666654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.15  E-value=0.001  Score=68.46  Aligned_cols=357  Identities=10%  Similarity=0.092  Sum_probs=196.5

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhcc----CCCC-c--H-----HHHHH--cCCHHHHHHhhcCCCCHHHHHHHH
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSI----ERSL-P--I-----DEVIQ--AGIVPRFVEFLLREDYPRLQFEAA   87 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~----~~~~-~--~-----~~~~~--~~~i~~L~~ll~~~~~~~~~~~a~   87 (449)
                      +.++.+++.++++ +......+..|..+...    .... .  +     +.+..  ..+++.+..++.++..+++...++
T Consensus       138 ~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L  216 (1023)
T 4hat_C          138 EFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATL  216 (1023)
T ss_dssp             THHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5677788887654 33444455555554322    1011 1  1     11111  123444445555444478888899


Q ss_pred             HHHHHhcCCChhhhHHHHhCCChHHHH-HhhCCCChHHHHHHHHHHHHHhcCC---C--chhhhHhh--cCCHHHH----
Q 039940           88 WVLTNIASGTSVNTKVLIDHGAVPIFV-KLLASPSDDVREQAVWALGNIVAHS---P--GCRNLVLH--EEALIPL----  155 (449)
Q Consensus        88 ~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~~~~--~~~i~~l----  155 (449)
                      .++.....-  -....+.+.+.++.+. .++.  +++++..|+.+|..+....   +  .+.+.+..  .+.+..+    
T Consensus       217 ~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i  292 (1023)
T 4hat_C          217 ESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSV  292 (1023)
T ss_dssp             HHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998872  2355677888999999 8885  6789999999999998632   2  12111110  0111111    


Q ss_pred             -------HHHH--cccccHHHHHHHHHHHHHhhcCCCC-----CC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940          156 -------LAQL--NEHARLSMLRIGTWTLSNLCKGKPQ-----PP-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       156 -------~~~l--~~~~~~~~~~~a~~~l~~l~~~~~~-----~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  220 (449)
                             -..+  ....|.+.....+..+..+......     .. ......++..++.+...++.++...++..-..++
T Consensus       293 ~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~  372 (1023)
T 4hat_C          293 MPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLV  372 (1023)
T ss_dssp             CCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Confidence                   1111  1234567777777777655543311     01 1111233446666666678888777776555554


Q ss_pred             cC---C---hhHHHHHHHhCcHHHHHHhhCCCCC---------cc-h--------hhHH----HHHHHhhcCCh-hhHHH
Q 039940          221 DG---T---NDKIQAVIEAGVCGPLVELLGHPSP---------SV-L--------IPAL----RTVGNIVTGDD-FQTQC  271 (449)
Q Consensus       221 ~~---~---~~~~~~~~~~~~~~~L~~ll~~~~~---------~v-~--------~~a~----~~l~~l~~~~~-~~~~~  271 (449)
                      ..   .   ......++. .+++.++.-+..+..         +. +        ....    .+|..++.-.. +..+ 
T Consensus       373 ~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~-  450 (1023)
T 4hat_C          373 ADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE-  450 (1023)
T ss_dssp             HHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred             HHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHH-
Confidence            21   0   111111222 355666666665431         11 0        0111    12222221111 1111 


Q ss_pred             HHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHhhc-----CchhHHHHHHHHHH
Q 039940          272 VINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNR-KQIQAVIDAGLIVPLVNLLQD-----AEFDIKKEAAWAIS  344 (449)
Q Consensus       272 ~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~~~~L~~ll~~-----~~~~v~~~a~~aL~  344 (449)
                          -.++.+.+.+.++ .+...++.++|+++.++.+.. +.-..++. .+++.|++++..     ....++..++|+++
T Consensus       451 ----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG  525 (1023)
T 4hat_C          451 ----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVG  525 (1023)
T ss_dssp             ----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence                1233444444432 278889999999999987533 32223332 478888888864     34556778889998


Q ss_pred             HhhccC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          345 NATKAG--TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       345 ~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      ..+..-  .++..+     .++..|...+.++++.+...|++++.++++.+..
T Consensus       526 ry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          526 QYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             TCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            876541  222222     2567788888778899999999999999987654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.09  E-value=0.0018  Score=67.65  Aligned_cols=341  Identities=11%  Similarity=0.088  Sum_probs=182.1

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC--hh---hhHHHHh--
Q 039940           34 DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT--SV---NTKVLID--  106 (449)
Q Consensus        34 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~--  106 (449)
                      ++..++..++.++..+..-   .....+....+++.+.+.+.. + ++++..|+.+|..+....  +.   ....+..  
T Consensus       207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            4577888888888877642   223445566777777743322 4 799999999999998642  21   1111110  


Q ss_pred             CCChHHHHH-h-------------hCCCChHHHHHHHHHHHHHhc-------CCCchhhhHhhcCCHHHHHHHHcccccH
Q 039940          107 HGAVPIFVK-L-------------LASPSDDVREQAVWALGNIVA-------HSPGCRNLVLHEEALIPLLAQLNEHARL  165 (449)
Q Consensus       107 ~~~i~~L~~-~-------------l~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~~  165 (449)
                      .+++..+.. +             -.+.+.+.....+..+..+..       ..+..+..+  ...++.++... ...+.
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~  358 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER  358 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence            122222211 1             112334444455555544322       111111111  12344444444 45577


Q ss_pred             HHHHHHHHHHHHhhc----CCCCC--ChhhhhchHHHHHHhhcCC-------------------CH---HHHHHHHHHHH
Q 039940          166 SMLRIGTWTLSNLCK----GKPQP--PFDQVRPVLPALAQLIHLD-------------------DE---EVLRNVCWTLS  217 (449)
Q Consensus       166 ~~~~~a~~~l~~l~~----~~~~~--~~~~~~~~l~~l~~ll~~~-------------------~~---~~~~~~~~~l~  217 (449)
                      ++...++..+..++.    .....  .......+++.++..+.-+                   +.   ..+..+..+|.
T Consensus       359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~  438 (1049)
T 3m1i_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV  438 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence            888888888877776    32111  1123355556665555321                   10   22334445555


Q ss_pred             HcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc-----CCc
Q 039940          218 NLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN-----NHK  290 (449)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~  290 (449)
                      .++...+..   +.. -+.+.+-..+..  .++..++.++++++.++.........-.-..+++.+..+...     + .
T Consensus       439 ~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~  513 (1049)
T 3m1i_C          439 YLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K  513 (1049)
T ss_dssp             HHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred             HHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence            555333221   111 123444444543  567789999999999976533321111112245555554332     2 4


Q ss_pred             hhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH--------HHHH
Q 039940          291 KSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI--------KYLV  359 (449)
Q Consensus       291 ~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~  359 (449)
                      +.++..++|+++.++.   ..++...     .+++.++..+.+.++.|+..|++++.+++..+.....        .++ 
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~-  587 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI-  587 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH-
Confidence            5566679999998764   2232221     3566788888888899999999999999985433221        111 


Q ss_pred             HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          360 REGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                       ..++..+..++..-+.+-.....+++..++...+
T Consensus       588 -~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          588 -QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             -HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence             1134444445555455555666777777765443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.06  E-value=0.0015  Score=67.67  Aligned_cols=337  Identities=12%  Similarity=0.089  Sum_probs=186.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh---CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940           75 LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL---ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA  151 (449)
Q Consensus        75 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  151 (449)
                      .+.+ ...++.++.+++.++.+..+..     ...++.++..+   .++++.++..++|+++.++..-....+.  -...
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence            4445 6889999999999997543211     12334444433   3357889999999999987532111122  2357


Q ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCCh-hHHH
Q 039940          152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTN-DKIQ  228 (449)
Q Consensus       152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~-~~~~  228 (449)
                      ++.++..+ ++  +.++..|++++.+++...+..-......+++.+..++...  +.+.+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78888887 33  7899999999999997543222233466777777777653  56788888999998876543 3333


Q ss_pred             HHHHhCcHHHHHHhh----CCC-CCcchh---hHHHHHHHhhcCCh----------------------hhHHHHHhcCCH
Q 039940          229 AVIEAGVCGPLVELL----GHP-SPSVLI---PALRTVGNIVTGDD----------------------FQTQCVINHGAV  278 (449)
Q Consensus       229 ~~~~~~~~~~L~~ll----~~~-~~~v~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~l  278 (449)
                      ..++ .+++.+...+    +.+ +++.+.   ..+.+++.+...-.                      ..... +...++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence            2333 3444444433    222 333333   33444444432110                      00111 223355


Q ss_pred             HHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHh----hcC-chhHHHHHHHHHHHhhc--cC
Q 039940          279 PYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLL----QDA-EFDIKKEAAWAISNATK--AG  350 (449)
Q Consensus       279 ~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll----~~~-~~~v~~~a~~aL~~l~~--~~  350 (449)
                      +.+..++... .+..+.+.++.++..++..-.+..     ...++.++..+    ... .+    ..++.++.++.  +.
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~  756 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH  756 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence            6666665421 156888999999988764111100     01233333332    221 22    23344444433  21


Q ss_pred             CH---HHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccH-HHHHHHhcchHHHHH
Q 039940          351 TQ---EQIKYLVREGCIKPLCDLLL---CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQ-YARLVEGAEGFKKIE  423 (449)
Q Consensus       351 ~~---~~~~~l~~~~~~~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~  423 (449)
                      ++   .....+.+ ..+..+..++.   ..+++++......+..++......-..      ... +...      ++.+.
T Consensus       757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~i------~~~~~  823 (963)
T 2x19_B          757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKAV------FQCAV  823 (963)
T ss_dssp             CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHHH------HHHHH
T ss_pred             CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHHH------HHHHH
Confidence            11   12222211 12333444433   246899999999999999877653210      011 2222      23333


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhcC
Q 039940          424 DLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       424 ~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      ....+++.++...+...+.+++.
T Consensus       824 ~~l~~~~~~~~~~~l~~l~~l~~  846 (963)
T 2x19_B          824 LALKFPEAPTVKASCGFFTELLP  846 (963)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHh
Confidence            34457888888888888887654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.91  E-value=0.0002  Score=73.46  Aligned_cols=307  Identities=11%  Similarity=0.008  Sum_probs=167.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh--hHhhcCCHHH
Q 039940           77 EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN--LVLHEEALIP  154 (449)
Q Consensus        77 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~  154 (449)
                      .+ +++...++.++.....-  -....+.+.+.++.+.+++..  ++++..|+.+|..+........+  .+...-.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 78999999999999872  234556667888999998874  89999999999999865432211  1111101111


Q ss_pred             HHHHHcc-cccHHHHHHHHHHHHHhh------cCCCC-CC-------hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 039940          155 LLAQLNE-HARLSMLRIGTWTLSNLC------KGKPQ-PP-------FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNL  219 (449)
Q Consensus       155 l~~~l~~-~~~~~~~~~a~~~l~~l~------~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  219 (449)
                      .+..+.. ..|.++.+..+..+..++      ...+. ..       .....+.++.++.++.+++.++...++..+...
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            1211211 456666554444332221      22221 01       133467889999999988888877766665544


Q ss_pred             ccC-----C----hhHHHHHHHhCcHHHHHHhhCCCCC----------------cchhhHHHHHHHhhcCChhhHHHHHh
Q 039940          220 SDG-----T----NDKIQAVIEAGVCGPLVELLGHPSP----------------SVLIPALRTVGNIVTGDDFQTQCVIN  274 (449)
Q Consensus       220 ~~~-----~----~~~~~~~~~~~~~~~L~~ll~~~~~----------------~v~~~a~~~l~~l~~~~~~~~~~~~~  274 (449)
                      ...     .    ......++. .+++.++.-+..++.                +.|......+..++.-.++..-...-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            321     0    111121222 355555555554321                12222221122222211211111000


Q ss_pred             cCCHHHHHHHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HCC----ChHHHHHHhh-----cCchhHHHHHHH
Q 039940          275 HGAVPYLLALLI---NNHKKSIKKESCWTVSNITAGNRKQIQAVI-DAG----LIVPLVNLLQ-----DAEFDIKKEAAW  341 (449)
Q Consensus       275 ~~~l~~L~~ll~---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~----~~~~L~~ll~-----~~~~~v~~~a~~  341 (449)
                      ..+.+.+...+.   +. +...++.+..+++.++.+......... ...    +++.+..++.     ..++.|+..+++
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            011122223332   23 567788899999999875322110000 011    3455555554     568999999999


Q ss_pred             HHHHhhccCC--HHHHHHHHHcCChHHHHh--hccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          342 AISNATKAGT--QEQIKYLVREGCIKPLCD--LLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       342 aL~~l~~~~~--~~~~~~l~~~~~~~~L~~--ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +++..+..-.  ++...     .+++.+++  .+.++++.++..|..++.++++....
T Consensus       518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            9999877521  11111     13555555  55667888999999999999998765

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.75  E-value=0.00046  Score=63.55  Aligned_cols=261  Identities=13%  Similarity=0.086  Sum_probs=153.4

Q ss_pred             chhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940           15 LNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA   94 (449)
Q Consensus        15 ~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~   94 (449)
                      .+|..+  ..+.|+..|-++.+++|-.|+..|+.++...+..       .|-.       ...+ .   ..|+++++-++
T Consensus       169 ~eWPfq--fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLA  228 (800)
T 3oc3_A          169 IENVLD--FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILV  228 (800)
T ss_dssp             CCSGGG--TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHH
T ss_pred             CCCHHH--HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHH
Confidence            456665  8899999999999999999999999998654211       1111       1122 1   44555555555


Q ss_pred             CCChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940           95 SGTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW  173 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  173 (449)
                      -+  ...             .+.++ .-..||+.|+.+|+.+ ..-|..      ..++..++..+ ....-+++..++-
T Consensus       229 LD--RFG-------------DYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLL  285 (800)
T 3oc3_A          229 TD--KFN-------------DFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLI  285 (800)
T ss_dssp             HB--CCB-------------BCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHH
T ss_pred             hc--ccc-------------ccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHH
Confidence            31  111             11111 1145788888888887 444332      22333444333 4456778888888


Q ss_pred             HHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC--Ccch
Q 039940          174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS--PSVL  251 (449)
Q Consensus       174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~  251 (449)
                      .+.++ .+--. .   ..++++.++..|.+.|.+|+..++.+|.-++  .++...     .++..+-+.|.+-+  ..-.
T Consensus       286 GLKYL-~DLL~-~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSAST  353 (800)
T 3oc3_A          286 ALGYL-KEFVE-D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSK  353 (800)
T ss_dssp             HHHHT-GGGCC-C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTH
T ss_pred             HHHHH-HHHHH-H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhh
Confidence            88887 11111 1   5677888888888888888888888888887  222223     23444555444422  1223


Q ss_pred             hhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940          252 IPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA  331 (449)
Q Consensus       252 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~  331 (449)
                      ...+..|+.++......   ..+...+|.|...+.+. -..||..+..++..+.  +......+        +-+++-.+
T Consensus       354 gSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~  419 (800)
T 3oc3_A          354 TSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEE  419 (800)
T ss_dssp             HHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCS
T ss_pred             HHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCC
Confidence            34455666666543211   11236788888889888 8889998888887775  22222111        22344455


Q ss_pred             chhHHHHHHHHHH
Q 039940          332 EFDIKKEAAWAIS  344 (449)
Q Consensus       332 ~~~v~~~a~~aL~  344 (449)
                      +.+++..+..+..
T Consensus       420 neeIl~lS~~VWk  432 (800)
T 3oc3_A          420 KDEIREMAIKLLK  432 (800)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            6677776666553

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.68  E-value=0.011  Score=60.92  Aligned_cols=311  Identities=11%  Similarity=0.121  Sum_probs=169.4

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHH-HHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhh
Q 039940           71 VEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIF-VKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLH  148 (449)
Q Consensus        71 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~  148 (449)
                      ...+.....+++...++.+++.+..=  -....+++.+.++.+ ..++.  +++++..|+.+|..+.... +.+.+.+. 
T Consensus       212 ~~iL~~~~~~~lv~~~L~~L~~~~sW--I~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~-  286 (1073)
T 3gjx_A          212 QFVMENSQNAPLVHATLETLLRFLNW--IPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFE-  286 (1073)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHH-
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHHh--cCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHH-
Confidence            33444444478888899999998872  234567788888988 46664  6789999999999988643 22222221 


Q ss_pred             cCCHHHHHH----HH------------cccccHHHHHHHHHHHHHhhcCCC-----C-CChhhhhchHHHHHHhhcCCCH
Q 039940          149 EEALIPLLA----QL------------NEHARLSMLRIGTWTLSNLCKGKP-----Q-PPFDQVRPVLPALAQLIHLDDE  206 (449)
Q Consensus       149 ~~~i~~l~~----~l------------~~~~~~~~~~~a~~~l~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~~~~  206 (449)
                       ..+..++.    .+            ....|++.....+.++..+.....     . ........++..++.+...+|.
T Consensus       287 -~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~  365 (1073)
T 3gjx_A          287 -TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEET  365 (1073)
T ss_dssp             -HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCH
T ss_pred             -HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcH
Confidence             11111111    11            122345666666666655443320     0 1112223455566777777888


Q ss_pred             HHHHHHHHHHHHcccC----C------h-----------hHHHHHHH---hCcHHHHHHhhCCCCC---------c-chh
Q 039940          207 EVLRNVCWTLSNLSDG----T------N-----------DKIQAVIE---AGVCGPLVELLGHPSP---------S-VLI  252 (449)
Q Consensus       207 ~~~~~~~~~l~~l~~~----~------~-----------~~~~~~~~---~~~~~~L~~ll~~~~~---------~-v~~  252 (449)
                      ++...++..-..+...    .      .           .....++.   ..+...++.-+..++.         + +|+
T Consensus       366 ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re  445 (1073)
T 3gjx_A          366 EIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE  445 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence            8887766554443311    0      0           01111111   1233444444444321         1 111


Q ss_pred             -----------hHH-HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcC-CHH-HHHHHHH
Q 039940          253 -----------PAL-RTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAG-NRK-QIQAVID  317 (449)
Q Consensus       253 -----------~a~-~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~-~~~-~~~~l~~  317 (449)
                                 .++ .++..++.-.......+    ..+.+.+.+..+ .+......++|+++.++.. .++ ....+.+
T Consensus       446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~  521 (1073)
T 3gjx_A          446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT  521 (1073)
T ss_dssp             ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence                       011 12222222111111111    233444444432 2577889999999999753 322 2223333


Q ss_pred             CCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          318 AGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       318 ~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                        +++.|+.+....     ...++...+++++.....- ..+.+.+.  .++..|...+.+.++.++..|+.++..+++.
T Consensus       522 --vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl-~~h~~~L~--~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          522 --VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL-RAHWKFLK--TVVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             --HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH-HHCHHHHH--HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             --HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH-HhCHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence              777888777544     2345566667887765541 11222222  2678888888899999999999999999998


Q ss_pred             hhhh
Q 039940          393 GEAK  396 (449)
Q Consensus       393 ~~~~  396 (449)
                      +...
T Consensus       597 C~~~  600 (1073)
T 3gjx_A          597 CRRH  600 (1073)
T ss_dssp             TGGG
T ss_pred             HHHH
Confidence            8764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.61  E-value=0.00031  Score=72.12  Aligned_cols=304  Identities=11%  Similarity=0.041  Sum_probs=165.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC--hhhhHHHHhCCCh
Q 039940           33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT--SVNTKVLIDHGAV  110 (449)
Q Consensus        33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~i  110 (449)
                      +.++.+...++.++.....   -.....++..+.++.+..++.+   ++++..|+.+|..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            4678888888999988875   3456777778889999998875   689999999999998733  3333333322001


Q ss_pred             HHHHHhhC--CCChHHHHHHHHHHHHHh------cCCC-----chhhh--HhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940          111 PIFVKLLA--SPSDDVREQAVWALGNIV------AHSP-----GCRNL--VLHEEALIPLLAQLNEHARLSMLRIGTWTL  175 (449)
Q Consensus       111 ~~L~~~l~--~~~~~~~~~a~~~L~~l~------~~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l  175 (449)
                      ...+..+.  .++.++.+..++.+..++      ...+     +.+..  -.-.+.++.++.++ .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11122222  456666655555444332      1111     00000  11124677777777 556667777666665


Q ss_pred             HHhhcCC---CC--CCh----hhhhchHHHHHHhhcCC-----C-----------HHHHHHHHHHHHHc-ccCChhHHHH
Q 039940          176 SNLCKGK---PQ--PPF----DQVRPVLPALAQLIHLD-----D-----------EEVLRNVCWTLSNL-SDGTNDKIQA  229 (449)
Q Consensus       176 ~~l~~~~---~~--~~~----~~~~~~l~~l~~ll~~~-----~-----------~~~~~~~~~~l~~l-~~~~~~~~~~  229 (449)
                      ..+....   +.  ...    .....+++.++.-+.-+     +           .+.|.... .+... +.-.++..-.
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            5544321   11  111    22344555555544421     0           12343333 33222 2212221111


Q ss_pred             HHHhCcHHHHHHhhC---CCCCcchhhHHHHHHHhhcCChhhHHHH-----HhcCCHHHHHHHhc-----cCCchhHHHH
Q 039940          230 VIEAGVCGPLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCV-----INHGAVPYLLALLI-----NNHKKSIKKE  296 (449)
Q Consensus       230 ~~~~~~~~~L~~ll~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~-----~~~~~l~~L~~ll~-----~~~~~~v~~~  296 (449)
                      ..-.-+.+.+...+.   +.++..++.++.+++.++.+-......+     .-..+++.+..+++     .+ .+.|+..
T Consensus       436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~  514 (980)
T 3ibv_A          436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL  514 (980)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence            000011222223332   2468889999999999987633211100     00123455555554     45 7899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc------CchhHHHHHHHHHHHhhccCC
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD------AEFDIKKEAAWAISNATKAGT  351 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~  351 (449)
                      ++++++..+.--..      ....++.++..+-+      ++..++..|+.++.+++..+.
T Consensus       515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            99999998751100      12345555555544      467899999999999998753

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.60  E-value=0.032  Score=57.50  Aligned_cols=296  Identities=14%  Similarity=0.131  Sum_probs=158.3

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHhcCCC-hhhhHHHHh--CC
Q 039940           33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRF-VEFLLREDYPRLQFEAAWVLTNIASGT-SVNTKVLID--HG  108 (449)
Q Consensus        33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~--~~  108 (449)
                      +.++++...++.+|..+.+=   -....+++.+.++.+ ..++.  + ++.+..|+.||..+.... ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            45677777778888888642   346678888888888 46664  3 789999999999988632 222222211  11


Q ss_pred             ChHHHHHhh-------------CCCChHHHHHHHHHHHHHhcCCCchhhhHhhc-C-------CHHHHHHHHcccccHHH
Q 039940          109 AVPIFVKLL-------------ASPSDDVREQAVWALGNIVAHSPGCRNLVLHE-E-------ALIPLLAQLNEHARLSM  167 (449)
Q Consensus       109 ~i~~L~~~l-------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~  167 (449)
                      ++..+..++             ...+.+.....+.++..+...   ....+... +       ++..++.+- ..++.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            222222222             122334545555555554321   11122111 1       222233333 4568888


Q ss_pred             HHHHHHHHHHhhcC----CC-----C----------CC--hhhhhch----HHHHHHhhcCCC-----------------
Q 039940          168 LRIGTWTLSNLCKG----KP-----Q----------PP--FDQVRPV----LPALAQLIHLDD-----------------  205 (449)
Q Consensus       168 ~~~a~~~l~~l~~~----~~-----~----------~~--~~~~~~~----l~~l~~ll~~~~-----------------  205 (449)
                      .+.+......|...    .+     .          ..  .....++    ...++.-+..++                 
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            88777665544332    11     0          00  1112233    333333333211                 


Q ss_pred             --H------HHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHH-HHHh
Q 039940          206 --E------EVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQ-CVIN  274 (449)
Q Consensus       206 --~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~  274 (449)
                        .      +..+.++..+.++.   ......    -..+.+...+..  .++...+.+||+++.++..-.+..+ .++ 
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-  519 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLD---YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-  519 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHC---HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-
T ss_pred             hhcchHHHHHHHHHHHHHHhcCC---HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-
Confidence              0      12222332232222   111111    123444444443  3577899999999999754332222 222 


Q ss_pred             cCCHHHHHHHhccCC--c--hhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940          275 HGAVPYLLALLINNH--K--KSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT  347 (449)
Q Consensus       275 ~~~l~~L~~ll~~~~--~--~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~  347 (449)
                      ..+++.|+.+...+.  +  ..++...+|+++...+   ..++...     .++..+++.+.+.++.++..|+.|+..++
T Consensus       520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~  594 (1073)
T 3gjx_A          520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIA  594 (1073)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            246777777775442  2  2355556789988764   2333332     25667778888889999999999999998


Q ss_pred             ccCC
Q 039940          348 KAGT  351 (449)
Q Consensus       348 ~~~~  351 (449)
                      ..+.
T Consensus       595 ~~C~  598 (1073)
T 3gjx_A          595 QKCR  598 (1073)
T ss_dssp             HHTG
T ss_pred             HHHH
Confidence            8653

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.58  E-value=0.0072  Score=52.12  Aligned_cols=292  Identities=14%  Similarity=0.123  Sum_probs=170.4

Q ss_pred             HHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHH
Q 039940          133 GNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRN  211 (449)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~  211 (449)
                      .++..++....+-+....++..+...+ +.++.++.+..+..+...+... .......+..+|.++..+. +++.++...
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence            344455555666677888888888888 8889999999999999988764 2233334788999888887 678999999


Q ss_pred             HHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-------CCcchhhHHHHHHHhhcC-------------------C
Q 039940          212 VCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-------SPSVLIPALRTVGNIVTG-------------------D  265 (449)
Q Consensus       212 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~-------------------~  265 (449)
                      ....++|...+.....+..+..+.+..|-..+...       +..-+..||.+++|..+.                   .
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G  424 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG  424 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence            99999999999887777778889998888765431       222344566655554311                   1


Q ss_pred             hh---hHHHHHhcCCHHHHHHHhccCC-----chhHHHHHHHHHHHHhcCC--H-HHH----HHHHHCCChHHHHHHhhc
Q 039940          266 DF---QTQCVINHGAVPYLLALLINNH-----KKSIKKESCWTVSNITAGN--R-KQI----QAVIDAGLIVPLVNLLQD  330 (449)
Q Consensus       266 ~~---~~~~~~~~~~l~~L~~ll~~~~-----~~~v~~~a~~~l~nl~~~~--~-~~~----~~l~~~~~~~~L~~ll~~  330 (449)
                      +.   +...+++.++++.|+..|+-+.     -.++|......+.-+.+..  | +..    +.+.+.+.+-.+.-.+.-
T Consensus       425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW  504 (619)
T 3c2g_A          425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW  504 (619)
T ss_dssp             HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence            11   2233456678888988887542     1356666665554444321  0 000    001112222222222210


Q ss_pred             -----Cc-------hhHHHHHHHHHHHhhccC-CHHH-HHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 039940          331 -----AE-------FDIKKEAAWAISNATKAG-TQEQ-IKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       331 -----~~-------~~v~~~a~~aL~~l~~~~-~~~~-~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~  394 (449)
                           .+       ..+.+.+...|..+.+.+ +... ...+.   .+.-=.++++++  .|.....++..-.++++.++
T Consensus       505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~Y---sIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP  581 (619)
T 3c2g_A          505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSY---SIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP  581 (619)
T ss_dssp             HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTT---TSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhee---eccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence                 01       122233344444444332 2111 11111   122223445543  45556666666666666665


Q ss_pred             hhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940          395 AKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      -.+.             ..  .---..++-+.+|+|+++.+.|..++.+|
T Consensus       582 ~~Ad-------------~W--~i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          582 TRAD-------------IW--TIDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             THHH-------------HS--CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             chhc-------------cc--eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            4321             11  11124567789999999999999998875

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.0015  Score=56.73  Aligned_cols=192  Identities=13%  Similarity=0.084  Sum_probs=125.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHH-HHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh-
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPID-EVI--QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS-   98 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-   98 (449)
                      .+| +-+.|.|.++..|..|+..|.+++......... ...  -....+.+-..+.+.+ ..++..++.++..++.... 
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence            344 567889999999999999999887653211111 111  1234556667888888 8999999999988875211 


Q ss_pred             ----hhhHHHHhCCChHHHHHh-hCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940           99 ----VNTKVLIDHGAVPIFVKL-LASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW  173 (449)
Q Consensus        99 ----~~~~~~~~~~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  173 (449)
                          .......-..+++.|+.- +.+....++..+..++..++...... ..     .+..++..+ ++.++.++..++.
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~  161 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN  161 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence                111111223457777764 78888999999999888776433211 11     123444455 6778999998888


Q ss_pred             HHHHhhcCCC--CCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          174 TLSNLCKGKP--QPP-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       174 ~l~~l~~~~~--~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                      .|..+.....  ... ......+++.+..++.+.|++||..+..++..+...-
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            8887765531  111 2223456677888899999999999999998876543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0055  Score=53.12  Aligned_cols=187  Identities=10%  Similarity=0.120  Sum_probs=124.8

Q ss_pred             HHHhhCCCCCcchhhHHHHHHHhhcCChhhH--HHHH--hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC------
Q 039940          239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCVI--NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN------  308 (449)
Q Consensus       239 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~--~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~------  308 (449)
                      +-.-+.+.+|..|..|+..+..+....+...  ....  -....+.+...+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5577889999999999999988765433211  1111  123456677788888 9999999999999887521      


Q ss_pred             HHHHHHHHHCCChHHHHHH-hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940          309 RKQIQAVIDAGLIVPLVNL-LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE  387 (449)
Q Consensus       309 ~~~~~~l~~~~~~~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~  387 (449)
                      ........ ..+++.|+.= +.+....++..+..++..++......  ..     +++.+...+.+.+|.++..++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence            11111111 2456666653 66678889999998888877543211  11     3566778889999999999999999


Q ss_pred             HHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          388 NILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       388 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      .++........      ....+...     +++.+..+..+.+++|+..|..++-.+|
T Consensus       165 ~~l~~fg~~~~------~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          165 ELMAAFGLTNV------NVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             HHHHHHTTTTC------CHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcC------CchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            99876432210      01111222     2456778889999999999999987655

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.49  E-value=0.022  Score=49.30  Aligned_cols=225  Identities=9%  Similarity=0.096  Sum_probs=158.2

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh----HHHHHHHh-CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND----KIQAVIEA-GVCGPLVELLGHPSPSVLIPALRTVGNIVTGD  265 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  265 (449)
                      .+++..++..+..=+-+.+..+..+..++.+...+    ..+.+.+. .++..|+..-  .++++...+-..|..++.+ 
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~-  153 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRH-  153 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTS-
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHh-
Confidence            47788888888888899999999999888765432    23333321 2333333332  4555665655566666654 


Q ss_pred             hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHhhcCchhHHHHHHHH
Q 039940          266 DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---GLIVPLVNLLQDAEFDIKKEAAWA  342 (449)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~v~~~a~~a  342 (449)
                      +.....++..+.+..+.+.+..+ +-++...|..++..+..........++..   .++...-.++.+++.-+|..++..
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            67777788888888999999998 99999999999999876555555566543   357777888999999999999999


Q ss_pred             HHHhhccC-CHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc--ch
Q 039940          343 ISNATKAG-TQE-QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA--EG  418 (449)
Q Consensus       343 L~~l~~~~-~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  418 (449)
                      |+.+...- +.. ..+++-+..-+..++.+|+++...++..|..++.-++....+.          .+....+...  -.
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~----------~~I~~IL~~Nr~kL  302 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL  302 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC----------hHHHHHHHHHHHHH
Confidence            99998841 112 2233333456889999999999999999999998877654432          2344444443  24


Q ss_pred             HHHHHHHhcCC
Q 039940          419 FKKIEDLKSHG  429 (449)
Q Consensus       419 ~~~l~~l~~~~  429 (449)
                      ++-+..+..+.
T Consensus       303 l~fl~~f~~d~  313 (341)
T 1upk_A          303 IEFLSKFQNDR  313 (341)
T ss_dssp             HHHHHHTTTTC
T ss_pred             HHHHHhCCCCC
Confidence            56666776554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.47  E-value=0.0081  Score=49.64  Aligned_cols=187  Identities=10%  Similarity=0.125  Sum_probs=125.1

Q ss_pred             CHHHHHHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHh-------hCCCCC--cc--h-hhHHHHHHHhhcCChhhHHH
Q 039940          205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVEL-------LGHPSP--SV--L-IPALRTVGNIVTGDDFQTQC  271 (449)
Q Consensus       205 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~l-------l~~~~~--~v--~-~~a~~~l~~l~~~~~~~~~~  271 (449)
                      +++.|+.|+..|+.--+.-++..-.+..+ |.+..|++=       +..+.-  ..  | .+|+..+-.++.+ ++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence            44557777776666444444444444444 555544332       222111  11  1 2344444555654 777778


Q ss_pred             HHhcCCHHHHHHHhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940          272 VINHGAVPYLLALLINNH----KKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA  346 (449)
Q Consensus       272 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l  346 (449)
                      ++++++.-.|..+|+...    ...+|-.+.++++.+.. .+++.+..+++.+++|..++.++.++.-.|..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            899988888888886542    24688899999999986 7888999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHH--------cCChHHHH-hhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          347 TKAGTQEQIKYLVR--------EGCIKPLC-DLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       347 ~~~~~~~~~~~l~~--------~~~~~~L~-~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      ...  .....++..        ..++..++ .+.+++++.+.+.++.+..++.+...
T Consensus       173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            874  444444332        11233333 34456788888998888888776544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.44  E-value=0.0012  Score=55.88  Aligned_cols=181  Identities=15%  Similarity=0.074  Sum_probs=116.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----ChhhHHHH
Q 039940          197 LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG----DDFQTQCV  272 (449)
Q Consensus       197 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~  272 (449)
                      +...+.+.|..-+..++..|.......+.......+ .+++.+.--+.+++..+...++.++..+...    ...... .
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~-~  128 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ-E  128 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH-H
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH-H
Confidence            444555566666666666666554333322111111 1233333334467777887887777766421    000111 0


Q ss_pred             HhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC
Q 039940          273 INHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT  351 (449)
Q Consensus       273 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  351 (449)
                      --.-++|.|+.-+.++ ...+|..+-.++..+.. .++.        .+++.+++-+.+.+..+|..++..+..+....+
T Consensus       129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            0123688899988888 78899888887777654 2222        256677788888899999999999999876422


Q ss_pred             HHHHHHHHHcCCh---HHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940          352 QEQIKYLVREGCI---KPLCDLLLCADPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       352 ~~~~~~l~~~~~~---~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~  394 (449)
                      ..      ....+   +.+..++.+.|..+|..|+.++..++....
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            22      23468   999999999999999999999998876653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.42  E-value=0.0028  Score=53.65  Aligned_cols=178  Identities=11%  Similarity=0.019  Sum_probs=118.5

Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHHhh----cCCC
Q 039940          111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSNLC----KGKP  183 (449)
Q Consensus       111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l~----~~~~  183 (449)
                      +.+...|-+.+..-+..++..|.......+.  ..+.   .+..++..+.   -+.+..+...++.++..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            4455555566777777777777766543322  1221   2222333221   3567777777777766653    3322


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940          184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT  263 (449)
Q Consensus       184 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~  263 (449)
                      .-.......++|.++.-+.++.+.+|..+-.++..+..-.+       -..+++.+..-+++.++.++..++..++.+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            22333346789999999988889999888877766653211       11356778888899999999999999988864


Q ss_pred             CChhhHHHHHhcCCH---HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          264 GDDFQTQCVINHGAV---PYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       264 ~~~~~~~~~~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      .....     ....+   +.+..++.+. |..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            32211     24478   9999999999 99999999999987764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.35  E-value=0.019  Score=49.79  Aligned_cols=201  Identities=12%  Similarity=0.110  Sum_probs=138.6

Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh----hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR----NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      .+...+.+..|+..|..-+-+.|..+..++.++.+.....+    +.+..  -...+..++....++++.-.+-..|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            34555888999999998899999999999999987664322    22221  2222333333344555555555566665


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh---CcHHHHHHhhCCCCCcchhhHH
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA---GVCGPLVELLGHPSPSVLIPAL  255 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~ll~~~~~~v~~~a~  255 (449)
                      +++..-.......+.+-.+...++.++-++...|..++..+...+.......+..   .++...-.++.+++.-++..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            5554322333334445566677788889999999999988876655444444443   4566777889999999999999


Q ss_pred             HHHHHhhcCChh--hH-HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          256 RTVGNIVTGDDF--QT-QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       256 ~~l~~l~~~~~~--~~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      ..|+.+......  .. ..+-+..-+..++.+|+++ +..++.+|..++--+++
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999865322  22 2222456788999999999 99999999999888876

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.05  E-value=0.0058  Score=56.54  Aligned_cols=246  Identities=13%  Similarity=0.098  Sum_probs=158.2

Q ss_pred             ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch--hhhHhhcCCHHHHHHHHc-c--------cccHHHHHHHHHHHHH
Q 039940          109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC--RNLVLHEEALIPLLAQLN-E--------HARLSMLRIGTWTLSN  177 (449)
Q Consensus       109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~-~--------~~~~~~~~~a~~~l~~  177 (449)
                      +...|+.-|-++.+++|..|+.+|+.+.......  +.........-.++-.+. +        ..-..|++.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            5567777778899999999999999987433210  100001122223333331 1        1124799999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      + ..-+..     ..++..++..+..+..+++..++-.|.++..--..     . .++++.++..|.+.+.+|+..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-----L-d~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-----K-DGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-----H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-----H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence            9 555443     24455555566778899999999999998211111     1 2678888899999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHK-KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK  336 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~  336 (449)
                      |..++ . ++...     .++..+...|.+-.| ..-.......|+.++.....   .......+|.|...+...-+.||
T Consensus       323 LiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          323 LCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             hhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence            98888 2 32222     245556666654312 11233445566666653321   01123678889999999999999


Q ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940          337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE  387 (449)
Q Consensus       337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~  387 (449)
                      ..++.++..+.   +....+.+.+        +++-+++++++..+.++..
T Consensus       393 ~AVL~TL~tfL---~~~~LRLIFQ--------NILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS---EESIDFLVAE--------VVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC---CHHHHHHHHH--------HHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hhhHHHHHHH--------HHHhCCcHHHHHHHHHHHH
Confidence            99999998887   2333333333        3455778888888777664

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.95  E-value=0.065  Score=44.33  Aligned_cols=191  Identities=15%  Similarity=0.091  Sum_probs=124.0

Q ss_pred             CCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHh-------ccCC-chhHHHHHHH---HHHHHhcCCHHHHHH
Q 039940          247 SPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALL-------INNH-KKSIKKESCW---TVSNITAGNRKQIQA  314 (449)
Q Consensus       247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll-------~~~~-~~~v~~~a~~---~l~nl~~~~~~~~~~  314 (449)
                      +++.|+.|+.-|+.=-...++....+.. .|.+..|++=+       ..+. ....-...|.   .+..+++ .++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            4556888877776654444444444443 34444443222       1110 1122222333   3344444 4577788


Q ss_pred             HHHCCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940          315 VIDAGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI  389 (449)
Q Consensus       315 l~~~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l  389 (449)
                      +++.++.-.|...++..     -..+|-.++++++.++...+++...++.+.+.++...+.++.+++--+..|..++.++
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            99999888888888665     2578999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940          390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET  443 (449)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~  443 (449)
                      +..+...+.....   .+.|.....-.|  ..+.++..++++.+-+.+.....+
T Consensus       173 L~dd~GL~YiC~t---~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlR  221 (268)
T 2fv2_A          173 LLDDTGLAYICQT---YERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLR  221 (268)
T ss_dssp             HHSHHHHHHHTSS---HHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHcc---HHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHH
Confidence            9877766544322   111222222111  334566777888876665554443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.89  E-value=0.059  Score=44.20  Aligned_cols=144  Identities=15%  Similarity=0.045  Sum_probs=105.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhc-CCCchhh
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVA-HSPGCRN  144 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~-~~~~~~~  144 (449)
                      ++....+.+++. .+++..|+..|+.. ...+         ..++.+.. +-..++..+++.+..++..++. ..|+.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            445556667777 79999999999887 3111         24666666 5567889999999999999985 44431  


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                            .++.+.... .+++..+++.|+..+.-.+.. + ........++|.+..+..+++.-|+..+.+.|..++..++
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  344555555 889999999998877654443 2 1223335678888888888899999999999999999999


Q ss_pred             hHHHHHHH
Q 039940          225 DKIQAVIE  232 (449)
Q Consensus       225 ~~~~~~~~  232 (449)
                      +....+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.87  E-value=0.1  Score=47.50  Aligned_cols=249  Identities=15%  Similarity=0.098  Sum_probs=144.0

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHH
Q 039940          119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALA  198 (449)
Q Consensus       119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~  198 (449)
                      .++...+..|...+......-|...+.     ++..++.++ .+.|..++.+|...|..+|.+      .....+.++|.
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence            357889999999999998877776443     567899999 888999999999999999987      23678889999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-ChhhHHHHHhcCC
Q 039940          199 QLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-DDFQTQCVINHGA  277 (449)
Q Consensus       199 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~  277 (449)
                      ++|+++++.-...+-.+|..+...++.        +.+..+...+..+++.+|+.++..|..-... ..+....-.+.-+
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            999998887777777777777655543        2233344444445677888888877543321 1111111222234


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHh------hcCchhHHHHHHHHHHHhh---
Q 039940          278 VPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLL------QDAEFDIKKEAAWAISNAT---  347 (449)
Q Consensus       278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll------~~~~~~v~~~a~~aL~~l~---  347 (449)
                      +..+.+.|.+- ...--.-....|..+-. .++...+.+++     .+.+..      ...|++.....+.++....   
T Consensus       179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            55566666443 22211222233333322 34444444432     333321      1124444444444444322   


Q ss_pred             -cc-CCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhh
Q 039940          348 -KA-GTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGE  394 (449)
Q Consensus       348 -~~-~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~  394 (449)
                       .. .+.....++.+. +++.+-.+-... .++.+...+.++.-+..+..
T Consensus       253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence             21 244566666665 666555443322 12245556666666665554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.85  E-value=0.011  Score=51.09  Aligned_cols=157  Identities=15%  Similarity=0.237  Sum_probs=115.4

Q ss_pred             HHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHH
Q 039940          216 LSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKK  295 (449)
Q Consensus       216 l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~  295 (449)
                      +.++.-++.+.++-+++.+++..+...++.++.++....+..|...+....-...  --...+|.++..+.-..+.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceEE
Confidence            3455667777888899999999999999999999999999999888654221110  01346788888886444889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-------chhHHHHHHHHHHHhhcc-------------------
Q 039940          296 ESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-------EFDIKKEAAWAISNATKA-------------------  349 (449)
Q Consensus       296 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~-------------------  349 (449)
                      ...+.|+|..++.....+..+..|.++.|...+...       +..-++.||..++|....                   
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999999888777788899999999987543       334455555555554332                   


Q ss_pred             C--CHHHHHHHHHcCChHHHHhhccCC
Q 039940          350 G--TQEQIKYLVREGCIKPLCDLLLCA  374 (449)
Q Consensus       350 ~--~~~~~~~l~~~~~~~~L~~ll~~~  374 (449)
                      |  ++.+...|++.++++.|+.+++-+
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e  450 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCE  450 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1  234556677777888999988754

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.85  E-value=0.00034  Score=58.84  Aligned_cols=64  Identities=13%  Similarity=0.003  Sum_probs=38.8

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC
Q 039940           29 AGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG  108 (449)
Q Consensus        29 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  108 (449)
                      +++.++++.++..++..+.                   ...+..++++++ +.++..++..+.                 
T Consensus        57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L~-----------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRLP-----------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTSC-----------------
T ss_pred             HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHCC-----------------
Confidence            4456788888888876430                   123556666666 677777664310                 


Q ss_pred             ChHHHHHhhCCCChHHHHHHHH
Q 039940          109 AVPIFVKLLASPSDDVREQAVW  130 (449)
Q Consensus       109 ~i~~L~~~l~~~~~~~~~~a~~  130 (449)
                       .+.|..++++++..+|..++.
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~  120 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVAD  120 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCHHHHHHHHH
Confidence             134555666666777766555

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.78  E-value=0.00093  Score=56.17  Aligned_cols=88  Identities=18%  Similarity=0.034  Sum_probs=57.8

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940           72 EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA  151 (449)
Q Consensus        72 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  151 (449)
                      .++++++ +.++..++..+                  ....+..+++++++.+|..++..|.      +           
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------~-----------  100 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------R-----------  100 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------S-----------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------H-----------
Confidence            4567777 89998888743                  1345777888999999998886421      1           


Q ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHH
Q 039940          152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCW  214 (449)
Q Consensus       152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~  214 (449)
                       ..+..++ ++++..|+..++..+   .              .+.+..+++++++.++..+..
T Consensus       101 -~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          101 -EQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             -GGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             -HHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence             1233333 777888888877632   1              013445566777888877766

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.64  E-value=0.076  Score=44.35  Aligned_cols=165  Identities=15%  Similarity=0.126  Sum_probs=113.0

Q ss_pred             hhhHHHHHhcCCHHHHHHHhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchh
Q 039940          266 DFQTQCVINHGAVPYLLALLIN----------NHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFD  334 (449)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~  334 (449)
                      ..-.+.+ ..+++..|+.+|..          ..+.....++..||..+.. +......++. .+.+..+...+.+.++.
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~  111 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPN  111 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence            3344444 34566666666632          1144567778888888854 5566667765 56788888889888999


Q ss_pred             HHHHHHHHHHHhhccCCH----H-HHHHH------HHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940          335 IKKEAAWAISNATKAGTQ----E-QIKYL------VREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGST  402 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~----~-~~~~l------~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  402 (449)
                      ++..++..|..++...++    + ..+.+      -+..-...+++.+. +.+.+.+..++..+..++...++...    
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~----  187 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----  187 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH----
Confidence            999999888777765321    1 11111      12234666777776 45677888899889888887765432    


Q ss_pred             CCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 039940          403 IGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVT  439 (449)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~  439 (449)
                         ......-|...|..+.++.+....++++......
T Consensus       188 ---R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~  221 (233)
T 2f31_A          188 ---RVHIRSELMRLGLHQVLQELREIENEDMKVQLCV  221 (233)
T ss_dssp             ---HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHH
Confidence               2346677889999999999999999998777543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.27  E-value=0.072  Score=43.70  Aligned_cols=143  Identities=8%  Similarity=0.018  Sum_probs=101.5

Q ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHccc-CChhHHHHHH
Q 039940          154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQ-LIHLDDEEVLRNVCWTLSNLSD-GTNDKIQAVI  231 (449)
Q Consensus       154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~  231 (449)
                      .+...|.++...+++..|+..+..+ .        .....++.+.. +...++-.|+..+..++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            4555555677779999999988877 2        12567888887 5556788999999999988874 3332      


Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 039940          232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQ  311 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  311 (449)
                        ..++.+.....+++..+|..|.......+.. +....  -...+++.+-.+..++ +..||+..+|.|..++..+|+.
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence              2567888899999999999998876543332 11000  0011455555556666 8899999999999999999987


Q ss_pred             HHHHHH
Q 039940          312 IQAVID  317 (449)
Q Consensus       312 ~~~l~~  317 (449)
                      ...+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766665

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.12  E-value=0.17  Score=45.77  Aligned_cols=163  Identities=15%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             hhhHHHHHhcCCHHHHHHHhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchh
Q 039940          266 DFQTQCVINHGAVPYLLALLIN----------NHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFD  334 (449)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~  334 (449)
                      ..-.+.+. .+++..|+.+|..          ..+......+..||..+.- +......++. ...+..+...+.+..+.
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~  177 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPN  177 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchH
Confidence            44445555 5677777777742          1144677788899988854 4566666664 56789999999999999


Q ss_pred             HHHHHHHHHHHhhccCCHHH-HHH----H------HHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940          335 IKKEAAWAISNATKAGTQEQ-IKY----L------VREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEAKKNRGST  402 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~~~~-~~~----l------~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  402 (449)
                      ++..++..|..++....++. ...    +      .+..-+..+++.+++ .+.+.+..++..+..++...++...    
T Consensus       178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~----  253 (383)
T 3eg5_B          178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----  253 (383)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----
T ss_pred             HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH----
Confidence            99999999988777543111 111    1      123447778888886 5778888899889888887655432    


Q ss_pred             CCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHH
Q 039940          403 IGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA  437 (449)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a  437 (449)
                         ......-|...|..+.+..+....++++....
T Consensus       254 ---R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi  285 (383)
T 3eg5_B          254 ---RVHIRSELMRLGLHQVLQELREIENEDMKVQL  285 (383)
T ss_dssp             ---HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHH
T ss_pred             ---HHHHHHHHHHCChHHHHHHHhcCCChhHHHHH
Confidence               23456778899999999999888888776553

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.11  E-value=0.22  Score=41.48  Aligned_cols=154  Identities=15%  Similarity=0.142  Sum_probs=92.5

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHhcC
Q 039940           27 MVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----E------DYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        27 l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~   95 (449)
                      .++.|++.. +.....-+..|...+..+.....+.+ ..+++..|++.|..    +      .+.+.+..++.||..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            344555432 22222334444444343323445556 46677777777642    1      125778899999999997


Q ss_pred             CChhhhHHHHh-CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-ch-hhhHh----------hcCCHHHHHHHHccc
Q 039940           96 GTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GC-RNLVL----------HEEALIPLLAQLNEH  162 (449)
Q Consensus        96 ~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~  162 (449)
                       +....+.+.. .+.+..+...+.+++..++..++..|..+|..+. .. ...+.          +..-+.++++.+...
T Consensus        84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A           84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence             5666666665 4688999999999999999999999999986553 22 22222          112344555555334


Q ss_pred             ccHHHHHHHHHHHHHhhcCC
Q 039940          163 ARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       163 ~~~~~~~~a~~~l~~l~~~~  182 (449)
                      .+.+.+..++..+..+....
T Consensus       163 ~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHHHCCC
Confidence            44555555555555555554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.79  E-value=1.1  Score=40.93  Aligned_cols=257  Identities=15%  Similarity=0.067  Sum_probs=151.4

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      .......++... +++......|+..+.++...- .+..+     ..+..+++++.+.+ ..+|.+|++.|-.+|.+  +
T Consensus        27 ~~~~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~F-P~l~~-----~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~--~   96 (507)
T 3u0r_A           27 HKDAYQVILDGV-KGGTKEKRLAAQFIPKFFKHF-PELAD-----SAINAQLDLCEDED-VSIRRQAIKELPQFATG--E   96 (507)
T ss_dssp             GHHHHHHHHHGG-GSCHHHHHHHHHHHHHHGGGC-GGGHH-----HHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT--T
T ss_pred             cHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh--h
Confidence            345556666654 456888999999999997653 33333     34788999999999 89999999999999985  5


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      +...+     ..+|.++|+.+++.-...+-++|..+...+|.        +.+..++..+. .+++.+++.++..|..=.
T Consensus        97 ~i~ki-----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A           97 NLPRV-----ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQIL-QGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             CHHHH-----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHH-HSCHHHHHHHHHHHHHHG
T ss_pred             hhhhH-----HHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHc-ccchHHHHHHHHHHHHHH
Confidence            55444     68999999998877777777777777554432        35556777773 357888888888776544


Q ss_pred             cCC-C-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHHHhCcHHHHHHhhC------CCCCcc
Q 039940          180 KGK-P-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVIEAGVCGPLVELLG------HPSPSV  250 (449)
Q Consensus       180 ~~~-~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~ll~------~~~~~v  250 (449)
                      ..- + ........-++..+.+.|..-..+-..-.+..|..+--... ...+     .+++.+.....      ..+++.
T Consensus       163 ~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~q-----eLv~ii~eQa~L~~~f~~sD~e~  237 (507)
T 3u0r_A          163 KTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQ-----QLVELVAEQADLEQTFNPSDPDC  237 (507)
T ss_dssp             GGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHH-----HHHHHHHHHHTTTSCCCSSCHHH
T ss_pred             hhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHH-----HHHHHHHHHHhccCCCCCcCHHH
Confidence            432 1 22333445566667777755444444444555544432221 1111     22333333322      123444


Q ss_pred             hhhHHHHHHHh----hcC--ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940          251 LIPALRTVGNI----VTG--DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA  306 (449)
Q Consensus       251 ~~~a~~~l~~l----~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~  306 (449)
                      ....+.|+..-    +.+  +...... +-..++|.+-.+-......+.+-....+++.++.
T Consensus       238 vdRlI~C~~~ALP~FS~~v~StkFv~y-~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~  298 (507)
T 3u0r_A          238 VDRLLQCTRQAVPLFSKNVHSTRFVTY-FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSS  298 (507)
T ss_dssp             HHHHHHHHHHHGGGCBTTBCCHHHHHH-HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccCCChHHHHHH-HHHhhccchhhccccccchHHHHHHHHHHHHHcc
Confidence            44444444332    222  1122222 2233555444333322122367777888888875

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.71  E-value=0.58  Score=42.26  Aligned_cols=162  Identities=15%  Similarity=0.112  Sum_probs=110.8

Q ss_pred             hhHHHHHhcCCHHHHHHHhcc----C------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchhH
Q 039940          267 FQTQCVINHGAVPYLLALLIN----N------HKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFDI  335 (449)
Q Consensus       267 ~~~~~~~~~~~l~~L~~ll~~----~------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v  335 (449)
                      ...+.+. .+++..|+.+|..    +      .+......++.||..+.- +......++. .+.+..+...+...++.+
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~  116 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM  116 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            3344443 4566666666531    1      145667788889888854 4566666665 567888988898889999


Q ss_pred             HHHHHHHHHHhhccCCHHH-HH----H------HHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 039940          336 KKEAAWAISNATKAGTQEQ-IK----Y------LVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTI  403 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~~-~~----~------l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  403 (449)
                      +..++..|..++....++. ..    .      ..+..-+..+++.+. +.+.+....++..+..++...++...     
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----  191 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----  191 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----
Confidence            9999888877766533111 11    1      112234666777776 45677888899999888887765442     


Q ss_pred             CcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHH
Q 039940          404 GDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA  437 (449)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a  437 (449)
                        ...+..-|..+|..+.+..+....++++....
T Consensus       192 --R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi  223 (386)
T 2bnx_A          192 --RVHIRSELMRLGLHQVLQELREIENEDMKVQL  223 (386)
T ss_dssp             --HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             --HHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence              33467888899999999999998998886663

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.64  E-value=0.66  Score=41.85  Aligned_cols=157  Identities=15%  Similarity=0.124  Sum_probs=101.4

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHh
Q 039940           25 PAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----------EDYPRLQFEAAWVLTNI   93 (449)
Q Consensus        25 ~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~~~~~a~~~L~~l   93 (449)
                      ...++.|+++- .......+..|+..+........+.+. .+++..|+..|..          ..+.+.+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34566666543 222233455565554443234456666 5678888888741          11257888999999999


Q ss_pred             cCCChhhhHHHHhC-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-ch-hhhHh----------hcCCHHHHHHHHc
Q 039940           94 ASGTSVNTKVLIDH-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GC-RNLVL----------HEEALIPLLAQLN  160 (449)
Q Consensus        94 ~~~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~  160 (449)
                      .. +......++.. ..+..+...+.+.++.++..++.+|.-+|.... .. ...+.          +..-+..++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            97 55566666554 789999999999999999999999999997653 22 22222          2233566677664


Q ss_pred             ccccHHHHHHHHHHHHHhhcCCC
Q 039940          161 EHARLSMLRIGTWTLSNLCKGKP  183 (449)
Q Consensus       161 ~~~~~~~~~~a~~~l~~l~~~~~  183 (449)
                      ...+.+.+..++..+..+....+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCC
Confidence            44566666666666666666654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.64  E-value=0.47  Score=41.18  Aligned_cols=173  Identities=10%  Similarity=0.062  Sum_probs=106.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCC----hHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCc
Q 039940           67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGA----VPIFVKLLAS-PSDDVREQAVWALGNIVAHSPG  141 (449)
Q Consensus        67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~  141 (449)
                      +..+.+++ +-. .+.+.-++..++-... .+.....+.+.+.    +..+...+.+ ..+..+-.+++++.|+.... .
T Consensus       105 l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~  180 (304)
T 3ebb_A          105 LQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-A  180 (304)
T ss_dssp             HHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-H
T ss_pred             HHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-h
Confidence            45666666 333 4667788888887776 5665555554322    2233344433 34667888999999996554 4


Q ss_pred             hhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHH
Q 039940          142 CRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTL  216 (449)
Q Consensus       142 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l  216 (449)
                      .+..+..  ....++..+.   .+.+..++..++..+.|++... ..........++..+..++.. .|.+....++.++
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            5555543  2344444442   3457788888898999888653 112233334456666666653 5889999999999


Q ss_pred             HHcccCChhHHHHHHHhCcHHHHHHhhCC
Q 039940          217 SNLSDGTNDKIQAVIEAGVCGPLVELLGH  245 (449)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~  245 (449)
                      +++...+.+..+.....|+-..+-...+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99998766544433333554444444444

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.40  E-value=0.64  Score=49.14  Aligned_cols=283  Identities=11%  Similarity=0.074  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh--CCCChHHHHHHHHHHHHHhcCC-----CchhhhHhhcCCH
Q 039940           80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL--ASPSDDVREQAVWALGNIVAHS-----PGCRNLVLHEEAL  152 (449)
Q Consensus        80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l--~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i  152 (449)
                      .+.+.+|-..|.++-. ++         .+...+...|  .+.+..+|..|+..|.+.....     ++.+..+ +    
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----
Confidence            6778888888877644 22         2334444433  3467899999999999987432     2222222 2    


Q ss_pred             HHHHHHHccc------ccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC---
Q 039940          153 IPLLAQLNEH------ARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG---  222 (449)
Q Consensus       153 ~~l~~~l~~~------~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---  222 (449)
                      ..++..+...      ....++..++.++..++... |...    ..+++.++.++.+ ++.....++.+|..++..   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2344444322      35778888899999888775 4222    4677788887765 455566677777776532   


Q ss_pred             ----ChhHHHH---HHHh---CcHHHHHHhhCC-------------------CCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940          223 ----TNDKIQA---VIEA---GVCGPLVELLGH-------------------PSPSVLIPALRTVGNIVTGDDFQTQCVI  273 (449)
Q Consensus       223 ----~~~~~~~---~~~~---~~~~~L~~ll~~-------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~  273 (449)
                          ...+...   .+..   .+++.+..++..                   .+..+...++.++.+...--+.  ..+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence                1111111   1111   223333333322                   1223555666666655432221  2233


Q ss_pred             hcC--CHHHHHHHhccCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHC---CChHHHHHHhh--------cCchhHHHH
Q 039940          274 NHG--AVPYLLALLINNHKKSIKKESCWTVSNITAGN--RKQIQAVIDA---GLIVPLVNLLQ--------DAEFDIKKE  338 (449)
Q Consensus       274 ~~~--~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~l~~~---~~~~~L~~ll~--------~~~~~v~~~  338 (449)
                      +..  .++.+..++.   +++++..|+.+|..++...  ++....++..   ..+..++....        +.+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  6777776655   4678999999999999732  4433333321   11224444432        224567777


Q ss_pred             HHHHHHHhhccCCHHHHHHHHH-----------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940          339 AAWAISNATKAGTQEQIKYLVR-----------EGCIKPLCDLLLCADPEIVTVCLKGLENILKV  392 (449)
Q Consensus       339 a~~aL~~l~~~~~~~~~~~l~~-----------~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~  392 (449)
                      .+..+..+..    . ...++.           .++++.+..++.+++..+...++..-..+++.
T Consensus       322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            7777776652    1 122222           12466677777777766666666555545443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.32  E-value=3.5  Score=43.58  Aligned_cols=300  Identities=11%  Similarity=0.086  Sum_probs=168.6

Q ss_pred             hcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHhcCC--
Q 039940           22 EILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL-REDYPRLQFEAAWVLTNIASG--   96 (449)
Q Consensus        22 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~--   96 (449)
                      ..+..+++.+.++  +...+..|-..|.++-..+  +         ....+...|. ...+..++..|+..|.+....  
T Consensus        11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W   79 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW   79 (1204)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence            3355555554454  6778888888887774321  1         2344444333 333378999999999987642  


Q ss_pred             ---ChhhhHHHHhCCChHHHHHhhCC---CChHHHHHHHHHHHHHhcCC-C-chhhhHhhcCCHHHHHHHHcccccHHHH
Q 039940           97 ---TSVNTKVLIDHGAVPIFVKLLAS---PSDDVREQAVWALGNIVAHS-P-GCRNLVLHEEALIPLLAQLNEHARLSML  168 (449)
Q Consensus        97 ---~~~~~~~~~~~~~i~~L~~~l~~---~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~  168 (449)
                         +++.+..+. ..+++.+......   ....++.....++..++... | ..      .+.++.++..+. . ++...
T Consensus        80 ~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~-~-~~~~~  150 (1204)
T 3a6p_A           80 NGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSK-Q-GETQT  150 (1204)
T ss_dssp             GGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHH-T-CHHHH
T ss_pred             ccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhc-C-CHHHH
Confidence               233333333 2344444433211   45889999999999887542 2 11      235667777773 2 45567


Q ss_pred             HHHHHHHHHhhcCC---CCCChhh-----------hhchHHHHHHhhcC-------------------CCHHHHHHHHHH
Q 039940          169 RIGTWTLSNLCKGK---PQPPFDQ-----------VRPVLPALAQLIHL-------------------DDEEVLRNVCWT  215 (449)
Q Consensus       169 ~~a~~~l~~l~~~~---~~~~~~~-----------~~~~l~~l~~ll~~-------------------~~~~~~~~~~~~  215 (449)
                      ..++.+|..++.+.   .......           ...+++.+..++..                   .+..+...++.+
T Consensus       151 e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~  230 (1204)
T 3a6p_A          151 ELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNT  230 (1204)
T ss_dssp             HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHH
Confidence            77888888886542   1111110           01344444444432                   134567778888


Q ss_pred             HHHcccCChhHHHHHHHhC--cHHHHHHhhCCCCCcchhhHHHHHHHhhcCC--hhhHHHHHh---cCCHHHHHHHhc--
Q 039940          216 LSNLSDGTNDKIQAVIEAG--VCGPLVELLGHPSPSVLIPALRTVGNIVTGD--DFQTQCVIN---HGAVPYLLALLI--  286 (449)
Q Consensus       216 l~~l~~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~---~~~l~~L~~ll~--  286 (449)
                      +.+....-+.  ..+.+..  +++.+..++.  +++++..|+.||..++...  +.....++.   ...+..++..+.  
T Consensus       231 l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~  306 (1204)
T 3a6p_A          231 LAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTA  306 (1204)
T ss_dssp             HHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTC
T ss_pred             HHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcC
Confidence            8776655442  2233433  6777776655  5779999999999998754  222111221   111334444432  


Q ss_pred             -----cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------CCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          287 -----NNHKKSIKKESCWTVSNITAGNRKQIQAVID-----------AGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       287 -----~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                           +..+.++.+..+..+..+..   . ...++.           .++++.++.+...++..+...++.....+...
T Consensus       307 ~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          307 DGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence                 11145677777777777752   1 112221           13577777777777777777777665555543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.27  E-value=0.16  Score=44.09  Aligned_cols=112  Identities=13%  Similarity=0.052  Sum_probs=72.5

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC--CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940           70 FVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH--GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL  147 (449)
Q Consensus        70 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  147 (449)
                      +...+.+...+..+..++++++|+.. ++..+..+...  .+++.+...+.+++..++..+..++.|++...-..+..-.
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            34444444346778999999999998 56677766643  3455555555667899999999999999842110000000


Q ss_pred             hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940          148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK  182 (449)
Q Consensus       148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  182 (449)
                      ....+..+...+....|.+....++-++.++...+
T Consensus       231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~  265 (304)
T 3ebb_A          231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISDD  265 (304)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence            11133344455545568888888999999988653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.11  E-value=1.7  Score=45.22  Aligned_cols=172  Identities=16%  Similarity=0.166  Sum_probs=108.7

Q ss_pred             HHHHHHHHcc---cccHHHHHHHHHHHHHh----hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940          152 LIPLLAQLNE---HARLSMLRIGTWTLSNL----CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       152 i~~l~~~l~~---~~~~~~~~~a~~~l~~l----~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                      +..+..++..   ..++.++..++.+++.+    |...+.........+...+...+...+.+-+...+.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            3344555522   13455666666665554    44433334344566666777777777888888999999998742  


Q ss_pred             hHHHHHHHhCcHHHHHHhhCC-----C--CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc-cCCchhHHHH
Q 039940          225 DKIQAVIEAGVCGPLVELLGH-----P--SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI-NNHKKSIKKE  296 (449)
Q Consensus       225 ~~~~~~~~~~~~~~L~~ll~~-----~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~  296 (449)
                               ..++.+..++..     .  ...++..|+++|..++...+...        -+.++.+.. ...++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence                     245666666642     1  23477889999999987654433        334666663 2338899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCH
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQ  352 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~  352 (449)
                      |+..|... ..+..         .+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            99888644 22333         23344555554 4788888888888888887655

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.57  E-value=2.2  Score=38.50  Aligned_cols=155  Identities=15%  Similarity=0.143  Sum_probs=96.5

Q ss_pred             HHHHhcCCCHHH-HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHhcC
Q 039940           27 MVAGVWSDDNSM-QLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----E------DYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        27 l~~~l~s~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~   95 (449)
                      .++.|++....- ....+..|.-.+........+.+. .+++..|+..|..    .      .+.+.+..++.||..+..
T Consensus         9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN   87 (386)
T 2bnx_A            9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   87 (386)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence            445555433221 122344444444433234455564 5667777777642    1      125778899999999998


Q ss_pred             CChhhhHHHHhC-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-ch-hhhHh----------hcCCHHHHHHHHccc
Q 039940           96 GTSVNTKVLIDH-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GC-RNLVL----------HEEALIPLLAQLNEH  162 (449)
Q Consensus        96 ~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~  162 (449)
                       +......+... +++..+...+.++++.++..++..|..+|..+. .. ...+.          +..-+..++..+..+
T Consensus        88 -~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  166 (386)
T 2bnx_A           88 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  166 (386)
T ss_dssp             -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             -CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence             55556665554 788999999999999999999999999986553 22 22222          222455667767545


Q ss_pred             ccHHHHHHHHHHHHHhhcCCC
Q 039940          163 ARLSMLRIGTWTLSNLCKGKP  183 (449)
Q Consensus       163 ~~~~~~~~a~~~l~~l~~~~~  183 (449)
                      .+.+.+..++..+..+....+
T Consensus       167 ~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          167 TSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCS
T ss_pred             ChHHHHHHHHHHHHHHHCCCC
Confidence            566666666666666666654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.40  E-value=2.4  Score=44.03  Aligned_cols=167  Identities=14%  Similarity=0.157  Sum_probs=110.9

Q ss_pred             ChHHHHHhhCC----CChHHHHHHHHHHHHHhc----CCCchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHH
Q 039940          109 AVPIFVKLLAS----PSDDVREQAVWALGNIVA----HSPGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSN  177 (449)
Q Consensus       109 ~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~  177 (449)
                      .+..+..++.+    .++.+++.++-+++.+..    ..+.+..     ..++.+.+.+.   ...+.+-+..++.+|.|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            35566666665    457788888887777753    3222211     22444444442   34466777888999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh--CCCCC
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIHL-------DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL--GHPSP  248 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~  248 (449)
                      +-..          ..++.+.+++..       ....++..|+++|..+....+...+        +.+.++.  ...++
T Consensus       467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  528 (1056)
T ss_dssp             HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence            8764          567778887742       1357888999999999876654433        5566666  34677


Q ss_pred             cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940          249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN  308 (449)
Q Consensus       249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~  308 (449)
                      ++|..|+..|....   +..       ..+..+...+..+.+.+|.......|.+++...
T Consensus       529 EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          529 ELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            89988888774322   221       145667777877658899999999999998743

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=94.23  E-value=1.3  Score=40.46  Aligned_cols=237  Identities=14%  Similarity=0.080  Sum_probs=125.3

Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      ......++...+..|+.++.++|+.-|+..-.+|..+-+.-...|..+.. .+-..+...+.......-....+.+++.+
T Consensus       153 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSI  231 (449)
T 2npp_B          153 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI  231 (449)
T ss_dssp             TTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHH
T ss_pred             hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence            33455556678889999999999999999999998886544444444432 22223444443333233344566777777


Q ss_pred             hcCCCCC-ChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhH-
Q 039940          179 CKGKPQP-PFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPA-  254 (449)
Q Consensus       179 ~~~~~~~-~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a-  254 (449)
                      ..+...+ ......-....|+.+..... ...-.....|+......++.....     ++..   +++. +......+. 
T Consensus       232 inGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~---LLk~WP~tns~Kevl  303 (449)
T 2npp_B          232 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMA---LLKYWPKTHSPKEVM  303 (449)
T ss_dssp             HSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHH---HHHTCCSSCHHHHHH
T ss_pred             HhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHH---HHHhCCCCCchHHHH
Confidence            7775322 22222333455556555443 222334445555444444433331     1222   2332 222222222 


Q ss_pred             -HHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCChHHHHHHhh
Q 039940          255 -LRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID---AGLIVPLVNLLQ  329 (449)
Q Consensus       255 -~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll~  329 (449)
                       +.-+..+... .+...+.+. ..++..+...+.+. +..|.+.|+....     ++... .++.   ..++|.+...+.
T Consensus       304 FL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~-----N~~i~-~li~~n~~~IlPii~p~L~  375 (449)
T 2npp_B          304 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEYIM-SLISDNAAKILPIMFPSLY  375 (449)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHHHH-HHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHC-----CHHHH-HHHHhchhhhHHhhHHHHH
Confidence             3334444432 233222222 23677788888888 8888888764432     22222 2222   124566666552


Q ss_pred             ----cC-chhHHHHHHHHHHHhhccCCHH
Q 039940          330 ----DA-EFDIKKEAAWAISNATKAGTQE  353 (449)
Q Consensus       330 ----~~-~~~v~~~a~~aL~~l~~~~~~~  353 (449)
                          .+ +..++..+..++.-+... ++.
T Consensus       376 ~~s~~HWn~~V~~la~~vlk~l~e~-d~~  403 (449)
T 2npp_B          376 RNSKTHWNKTIHGLIYNALKLFMEM-NQK  403 (449)
T ss_dssp             SCTTCCSSTTHHHHHHHHHHHHHTT-CHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHH-CHH
Confidence                22 778888888888877665 444

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=94.21  E-value=1.4  Score=39.50  Aligned_cols=234  Identities=13%  Similarity=0.076  Sum_probs=116.9

Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      ......++...+..|+.++.++|++-|...-.+|.++-+.-...|..+.. ..-..+...+.......=....+.+++.+
T Consensus       120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsI  198 (403)
T 3fga_B          120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI  198 (403)
T ss_dssp             HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence            33444555567888999999999999999999888875443333333321 11122333332222222223445555555


Q ss_pred             hcCCCCCC-hhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhH-
Q 039940          179 CKGKPQPP-FDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPA-  254 (449)
Q Consensus       179 ~~~~~~~~-~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a-  254 (449)
                      ..+...+- .....-....|+.+-.... .........|+......++.....+     +..   +++. +........ 
T Consensus       199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~---LLk~WP~tns~Kevl  270 (403)
T 3fga_B          199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMA---LLKYWPKTHSPKEVM  270 (403)
T ss_dssp             HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHH---HHHTCCSSCHHHHHH
T ss_pred             HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHH---HHHhCCCCCcHHHHH
Confidence            55542222 2222333445555555443 2222344445544444444333321     222   2322 212222222 


Q ss_pred             -HHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHh-
Q 039940          255 -LRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---GLIVPLVNLL-  328 (449)
Q Consensus       255 -~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~ll-  328 (449)
                       +.-+..+... .+...+.+. ..++..+...+.+. +..|.+.|.....     ++. +..++..   .++|.+...+ 
T Consensus       271 FL~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wn-----Ne~-i~~li~~n~~~IlPii~p~L~  342 (403)
T 3fga_B          271 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEY-IMSLISDNAAKILPIMFPSLY  342 (403)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHH-HHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhc-----cHH-HHHHHHHhHHHHHHHHHHHHH
Confidence             2333444432 222222222 23677788888888 8888887765432     222 2222221   2444444443 


Q ss_pred             ---hcC-chhHHHHHHHHHHHhhcc
Q 039940          329 ---QDA-EFDIKKEAAWAISNATKA  349 (449)
Q Consensus       329 ---~~~-~~~v~~~a~~aL~~l~~~  349 (449)
                         ..+ +..++..+..++.-+...
T Consensus       343 ~~~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          343 RNSKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             HTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHh
Confidence               334 788998888888877664

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=94.09  E-value=0.36  Score=36.37  Aligned_cols=76  Identities=4%  Similarity=-0.030  Sum_probs=60.0

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+..+..-+.+.++.++..|+..|-.++.+++..+...+....++..|..++...++.|+.+++..+.........
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~  118 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN  118 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence            3456667778889999999999999999988877776666666777777777778899999999999877765443

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.61  E-value=0.49  Score=36.01  Aligned_cols=76  Identities=9%  Similarity=-0.080  Sum_probs=62.6

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..|..-+.+.++.++..|+..|-.++.++...+...+....++..|..++..      .++.|+.+++..+.......
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            345677778888999999999999999999988888877777788888888863      47789999999998887665


Q ss_pred             hh
Q 039940          394 EA  395 (449)
Q Consensus       394 ~~  395 (449)
                      ..
T Consensus       129 ~~  130 (149)
T 3g2s_A          129 PE  130 (149)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=93.27  E-value=0.64  Score=39.67  Aligned_cols=135  Identities=11%  Similarity=0.086  Sum_probs=87.7

Q ss_pred             chhhHHHHHHHhhcCChhhHHHHH-hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHH
Q 039940          250 VLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID--AGLIVPLVN  326 (449)
Q Consensus       250 v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--~~~~~~L~~  326 (449)
                      ....|+-.|.-++..-....+.+- +...+..|+ +.... .+.++..|+.+++...+.+|..+..+.+  ..++..++.
T Consensus        44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            345566666666654333333222 333444444 22334 6789999999999999999999988876  345555555


Q ss_pred             Hhhc-------CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHh
Q 039940          327 LLQD-------AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKV  392 (449)
Q Consensus       327 ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~  392 (449)
                      -|..       ....+++.-+.+|.-|+... ..    | ....+..|..++...  ++.++.+++.++..++..
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~  190 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS-ED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKA  190 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccc
Confidence            4433       23356666777777777752 11    1 244667777777766  899999999999999963

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.70  E-value=0.46  Score=36.16  Aligned_cols=75  Identities=9%  Similarity=-0.105  Sum_probs=62.1

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..+..-+.+.++.++..|+..|-.++.+++..+...+....++..|..++..      .++.|+.+++..+.......
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            345667777888999999999999999999888888887777889999988874      37789999999988877654


Q ss_pred             h
Q 039940          394 E  394 (449)
Q Consensus       394 ~  394 (449)
                      .
T Consensus       119 ~  119 (148)
T 1mhq_A          119 P  119 (148)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=92.55  E-value=0.32  Score=36.35  Aligned_cols=75  Identities=12%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc-chHHHHHHHhcCCC--------HHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA-EGFKKIEDLKSHGN--------NGI  433 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~--------~~i  433 (449)
                      +++.|..-|+++++.+..+|+.+|..++..+..            .|..-+++. ..++.+.+....++        ..|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~------------~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS------------EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH------------HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH------------HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            577888889999999999999999999976643            244444433 44555555544433        569


Q ss_pred             HHHHHHHHHHhcCCCC
Q 039940          434 REKAVTILETYWLKGR  449 (449)
Q Consensus       434 ~~~a~~~i~~~~~~~~  449 (449)
                      +.+|..+++-.|++++
T Consensus       118 R~~AkEl~~ll~d~~~  133 (140)
T 1vdy_A          118 RETAHETISAIFSEEN  133 (140)
T ss_dssp             HHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHhCcCC
Confidence            9999999999999874

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.11  E-value=0.41  Score=37.16  Aligned_cols=76  Identities=4%  Similarity=-0.058  Sum_probs=60.4

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+.+++..+.........
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344666777888999999999999999999888777777666777778787765 5789999999988877765443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=91.81  E-value=0.85  Score=35.66  Aligned_cols=76  Identities=9%  Similarity=-0.050  Sum_probs=61.4

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|+.++..      .+..|+.+++..+.......
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            345677778888999999999999999998777777777777788888888863      36789999999998887665


Q ss_pred             hh
Q 039940          394 EA  395 (449)
Q Consensus       394 ~~  395 (449)
                      ..
T Consensus       131 ~~  132 (171)
T 1juq_A          131 PE  132 (171)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=90.00  E-value=1.2  Score=34.47  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTIL  441 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i  441 (449)
                      ++..|..-+.+.++.++..|+.+|..+++.+..            .|...+.....++.+..+... .++.|++++..++
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~------------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK------------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH------------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH------------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            466677778889999999999999999998754            356666666677777777554 6789999999998


Q ss_pred             HHh
Q 039940          442 ETY  444 (449)
Q Consensus       442 ~~~  444 (449)
                      +..
T Consensus       121 ~~W  123 (163)
T 1x5b_A          121 VEW  123 (163)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.88  E-value=2.5  Score=37.83  Aligned_cols=140  Identities=18%  Similarity=0.163  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940          293 IKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL  371 (449)
Q Consensus       293 v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll  371 (449)
                      .+.....-+..++. .++.    +. .++++.++.+..+.+.++|+.++..|...+.. ..+....     +++.|..++
T Consensus        41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL  109 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL  109 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence            45555555555443 2332    12 36888999988888999999999999888764 3333222     577888888


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCC-cccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          372 LCADPEIVTVCLKGLENILKVGEAKKNRGSTIG-DVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       372 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      .++|+.+.+.++.+..+++...-..-....... ..+..++.+..  ..+.+-.+.++.+.-++-.+.|.+++..
T Consensus       110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            889999999988888887744322211100000 00122333322  3456666778889999999999999854

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.49  E-value=6.1  Score=33.80  Aligned_cols=149  Identities=12%  Similarity=0.103  Sum_probs=95.3

Q ss_pred             HHHHHHhhcCC------CHHHHHHHHHHHHHcccCChhHHHHHH-HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940          194 LPALAQLIHLD------DEEVLRNVCWTLSNLSDGTNDKIQAVI-EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD  266 (449)
Q Consensus       194 l~~l~~ll~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~  266 (449)
                      +..+..+++++      +.+-...++..|..++..-.-..+.+- +...+..|+ +.....+.+++.|.++|+...++++
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP  102 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP  102 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence            34444555544      455677888888888855443333222 334444444 3334556789999999999999999


Q ss_pred             hhHHHHHh--cCCHHHHHHHhcc----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHH
Q 039940          267 FQTQCVIN--HGAVPYLLALLIN----N--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIK  336 (449)
Q Consensus       267 ~~~~~~~~--~~~l~~L~~ll~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~  336 (449)
                      .....+.+  ..++..+..-|..    +  ....+.+.-+.+|..|+..+..    + ....+..|.+++...  ++.++
T Consensus       103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k  177 (315)
T 3qml_C          103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ  177 (315)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence            98887764  3445554444432    1  1345777777888888765421    2 135668888888777  88999


Q ss_pred             HHHHHHHHHhhc
Q 039940          337 KEAAWAISNATK  348 (449)
Q Consensus       337 ~~a~~aL~~l~~  348 (449)
                      ..++..+..+..
T Consensus       178 ~Kvl~li~d~f~  189 (315)
T 3qml_C          178 IKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999888887774

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=89.08  E-value=1.2  Score=33.46  Aligned_cols=70  Identities=13%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE  442 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~  442 (449)
                      ++..|..-+.+.++.++..|+.+|..+++.+..            .|...+.....++.+..+....++.|++++..++.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~------------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~  110 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK------------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV  110 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH------------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            566677778888999999999999999988755            25555555566777777766678999999999987


Q ss_pred             Hh
Q 039940          443 TY  444 (449)
Q Consensus       443 ~~  444 (449)
                      ..
T Consensus       111 ~W  112 (140)
T 3ldz_A          111 EW  112 (140)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=88.60  E-value=2  Score=33.57  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc------CCCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS------HGNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~i~~~  436 (449)
                      ++..|..-+.+.++.++..++.+|..+++.+..            .|...+.+...++.|..+..      ..+.+|+++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~------------~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  118 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR------------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  118 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            466777778889999999999999999998765            36666777777888888864      246899999


Q ss_pred             HHHHHHHh
Q 039940          437 AVTILETY  444 (449)
Q Consensus       437 a~~~i~~~  444 (449)
                      +..+|+..
T Consensus       119 il~li~~W  126 (171)
T 1juq_A          119 VIELLYSW  126 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998863

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=88.29  E-value=1.9  Score=32.72  Aligned_cols=70  Identities=13%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc------CCCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS------HGNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~i~~~  436 (449)
                      ++..|..-+.+.++.++..++.+|..+++.+..            .|...+-...+++.|..+..      ..+++|+++
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~------------~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  116 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK------------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  116 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH------------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH------------HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence            566777778889999999999999999998865            36677777778888888864      367899999


Q ss_pred             HHHHHHHh
Q 039940          437 AVTILETY  444 (449)
Q Consensus       437 a~~~i~~~  444 (449)
                      +..+++..
T Consensus       117 il~li~~W  124 (149)
T 3g2s_A          117 ILELLYSW  124 (149)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998863

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=88.20  E-value=1.8  Score=32.85  Aligned_cols=70  Identities=11%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC------CCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH------GNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~i~~~  436 (449)
                      ++..|..-+.+.++.++..|+.+|..+++.+..            .|...+.....++.|..+...      .+++|+++
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  106 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            466677778899999999999999999998754            367777777888888887542      47899999


Q ss_pred             HHHHHHHh
Q 039940          437 AVTILETY  444 (449)
Q Consensus       437 a~~~i~~~  444 (449)
                      +..+++..
T Consensus       107 il~li~~W  114 (148)
T 1mhq_A          107 VIEILFSW  114 (148)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998863

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=88.09  E-value=14  Score=33.03  Aligned_cols=88  Identities=8%  Similarity=0.089  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHh
Q 039940           37 SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKL  116 (449)
Q Consensus        37 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  116 (449)
                      ..+...+....+++... ++.    .-..+++.++.+-.+++ .+++...+..|...+....+...     ..++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46777788888876543 222    22577999999988888 89999999999998874444332     346788888


Q ss_pred             hCCCChHHHHHHHHHHHHH
Q 039940          117 LASPSDDVREQAVWALGNI  135 (449)
Q Consensus       117 l~~~~~~~~~~a~~~L~~l  135 (449)
                      +.++++.+...++.+..++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8888999998888888776

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=86.04  E-value=20  Score=32.74  Aligned_cols=263  Identities=15%  Similarity=0.084  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHhccCC--CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHh
Q 039940           39 QLEAATQFRRLLSIER--SLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKL  116 (449)
Q Consensus        39 ~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  116 (449)
                      .......|..+...+.  ....+..++...+..|++++++++ ++-+...-.+|..+-......|..+... +-..+..+
T Consensus       134 LqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~f  211 (449)
T 2npp_B          134 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRF  211 (449)
T ss_dssp             HHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3344555666654321  122355566677889999999999 8999988888888776444455444332 23445555


Q ss_pred             hCC-CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 039940          117 LAS-PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL  194 (449)
Q Consensus       117 l~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  194 (449)
                      +.. ....-....+.+++.+..+-. ..+..- ..-....++.+.....-...-.+...|+..+...++.    ....++
T Consensus       212 i~e~e~~nGIaeLLeilgSIinGfa~PLKeeh-k~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi  286 (449)
T 2npp_B          212 IYETEHHNGIAELLEILGSIINGFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVV  286 (449)
T ss_dssp             HHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHH-HHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG----GHHHHH
T ss_pred             hcccCCCCCHHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH----hHHHHH
Confidence            432 222223346677777764421 111110 0000112222221111122233455555555544321    112233


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940          195 PALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI  273 (449)
Q Consensus       195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  273 (449)
                      ..|++.=-..+..-...-+.-+..+... .+.....+.. .++..+..++.+++..|.+.|+..+.|     +.....+.
T Consensus       287 ~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~  360 (449)
T 2npp_B          287 MALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLIS  360 (449)
T ss_dssp             HHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHH
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHH
Confidence            3333322223333333333444444433 2333332332 467788888889888888888765522     22221111


Q ss_pred             h--cCCHHHHHHHhc-----cCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          274 N--HGAVPYLLALLI-----NNHKKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       274 ~--~~~l~~L~~ll~-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                      +  ..++|.+...+.     +- +..++..|..++.-+...++.....+
T Consensus       361 ~n~~~IlPii~p~L~~~s~~HW-n~~V~~la~~vlk~l~e~d~~lf~~c  408 (449)
T 2npp_B          361 DNAAKILPIMFPSLYRNSKTHW-NKTIHGLIYNALKLFMEMNQKLFDDC  408 (449)
T ss_dssp             TTHHHHHHHHHHHHTSCTTCCS-STTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hchhhhHHhhHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            1  124566666552     22 67799999999998877777654433

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=85.23  E-value=2.2  Score=35.09  Aligned_cols=76  Identities=12%  Similarity=0.042  Sum_probs=59.7

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+.+++..+.........
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  122 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN  122 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence            355667778888999999999999999998877777776666677777777754 5778999999999888765543

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=85.23  E-value=21  Score=32.11  Aligned_cols=256  Identities=15%  Similarity=0.093  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh
Q 039940           40 LEAATQFRRLLSIERSLP--IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL  117 (449)
Q Consensus        40 ~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l  117 (449)
                      ......|.++...+.-++  .+..++...+..|+.+++++| ++-+...-.+|..+-......|..+.. .+-..+..++
T Consensus       102 qlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fi  179 (403)
T 3fga_B          102 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFI  179 (403)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHh
Confidence            334455555544321111  233445566888999999999 899998888888887655544444432 2224455544


Q ss_pred             CC-CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 039940          118 AS-PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP  195 (449)
Q Consensus       118 ~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  195 (449)
                      .. ..-.-....+.+++.+..+-. ..+..- ..-....++.+.....-...-.+...|+..+...+|.    ....++.
T Consensus       180 ye~e~~~GIaeLLeilgsIinGfa~PLkeeh-k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~----L~~~vi~  254 (403)
T 3fga_B          180 YETEHHNGIAELLEILGSIINGFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVM  254 (403)
T ss_dssp             HTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH-HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG----GHHHHHH
T ss_pred             cCcccCCCHHHHHHHHHHHHcccCCCchHHH-HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch----hHHHHHH
Confidence            32 111222235566666553221 111100 0000111222221111122234455555555554431    1122233


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940          196 ALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN  274 (449)
Q Consensus       196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  274 (449)
                      .+++.=-..++.-...-+.-+..+... ++.....+.. .++..+...+.+++..|.+.|+..+.|     +.....+.+
T Consensus       255 ~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnN-----e~i~~li~~  328 (403)
T 3fga_B          255 ALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISD  328 (403)
T ss_dssp             HHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHT
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhcc-----HHHHHHHHH
Confidence            333222233333333333444444433 2333332332 467788888888988888888766521     222211111


Q ss_pred             --cCCHHHHHHHh----ccCCchhHHHHHHHHHHHHhcCC
Q 039940          275 --HGAVPYLLALL----INNHKKSIKKESCWTVSNITAGN  308 (449)
Q Consensus       275 --~~~l~~L~~ll----~~~~~~~v~~~a~~~l~nl~~~~  308 (449)
                        ..++|.+...+    +..=+..++..+..++..+...+
T Consensus       329 n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d  368 (403)
T 3fga_B          329 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN  368 (403)
T ss_dssp             THHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhC
Confidence              12444444444    22216788888888888876544

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=85.06  E-value=16  Score=30.63  Aligned_cols=141  Identities=19%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940          292 SIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL  370 (449)
Q Consensus       292 ~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l  370 (449)
                      +.+.....-+..++.+ ++....     ++++.++.+..+.+.++|+..+..+...+.. ..+...     .+++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHH
Confidence            4666666666665543 333222     3566777766677889999999998888754 223222     267788888


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCC-cccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          371 LLCADPEIVTVCLKGLENILKVGEAKKNRGSTIG-DVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       371 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      ++++|+.+.+.++.+..+++...-..-......+ ......+.+.  ...+.+-++.++.+..++-.+.|.+++..
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            8888999999999888888766543332210000 0112233332  23566777788899999999999999854

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20

Probab=82.31  E-value=12  Score=33.43  Aligned_cols=192  Identities=12%  Similarity=0.070  Sum_probs=96.0

Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK  180 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~  180 (449)
                      ....++...+..|+.++.++|++-|.....+|..+-+.-...|..+. ..+-..+...+.......-....+.+++.+..
T Consensus       167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsIIn  245 (392)
T 2jak_A          167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIIN  245 (392)
T ss_dssp             HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred             hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence            34455567788999999999999999999999887554444444442 22223344555333333334456667777776


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          181 GKPQP-PFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       181 ~~~~~-~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      +...+ ......-....++.+.+... ...-.....|+......++.....+     +..+++.=-.++..-...-+.-+
T Consensus       246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~el  320 (392)
T 2jak_A          246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL  320 (392)
T ss_dssp             TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHH
Confidence            65322 22222333455555555443 1222234444444444444333311     22222221112222222223333


Q ss_pred             HHhhcCC-hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHH
Q 039940          259 GNIVTGD-DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT  300 (449)
Q Consensus       259 ~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  300 (449)
                      ..+...- +...+.+. ..++..+..++.+. +.+|.+.|...
T Consensus       321 eeiLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~  361 (392)
T 2jak_A          321 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYY  361 (392)
T ss_dssp             HHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred             HHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence            3333322 22222222 23666777777777 77777776543

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=82.27  E-value=4.6  Score=33.09  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh-cCCCHHHHHHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK-SHGNNGIREKAVTIL  441 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~i~~~a~~~i  441 (449)
                      ++..|..-+.+.++.++..++.+|..+++.+..            .|...+.+...++.+..+. ...+++|++++..++
T Consensus        43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~------------~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (220)
T 1dvp_A           43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA------------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (220)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH------------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            455666677889999999999999999998754            2455555555666666663 356789999999888


Q ss_pred             HH
Q 039940          442 ET  443 (449)
Q Consensus       442 ~~  443 (449)
                      +.
T Consensus       111 ~~  112 (220)
T 1dvp_A          111 QT  112 (220)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=82.24  E-value=4.4  Score=33.32  Aligned_cols=70  Identities=14%  Similarity=0.291  Sum_probs=53.2

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHHHHHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGIREKAVTIL  441 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i~~~a~~~i  441 (449)
                      ++..|..-+.+.++.++..|+.+|..+++.+...            |...+.....++.|..+ ....+++|++++..++
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li  113 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI  113 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            4666777788899999999999999999887652            45555555666666655 3456788999999988


Q ss_pred             HHh
Q 039940          442 ETY  444 (449)
Q Consensus       442 ~~~  444 (449)
                      +..
T Consensus       114 ~~W  116 (226)
T 3zyq_A          114 QAW  116 (226)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=81.89  E-value=22  Score=29.80  Aligned_cols=89  Identities=10%  Similarity=0.066  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH
Q 039940           36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK  115 (449)
Q Consensus        36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  115 (449)
                      .......+.....++........     ..+++.++.+..+++ .+++...+..+...+...++...     ..++.|..
T Consensus        29 ~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~   97 (257)
T 3gs3_A           29 PSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSM   97 (257)
T ss_dssp             HHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            36888888888887765422222     345777888776766 89999999999999864443332     34788888


Q ss_pred             hhCCCChHHHHHHHHHHHHH
Q 039940          116 LLASPSDDVREQAVWALGNI  135 (449)
Q Consensus       116 ~l~~~~~~~~~~a~~~L~~l  135 (449)
                      +++++++.+...++.+..++
T Consensus        98 Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           98 LLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             HTTCSCHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHH
Confidence            88888899998888877776

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=81.02  E-value=4  Score=31.30  Aligned_cols=74  Identities=8%  Similarity=0.030  Sum_probs=56.7

Q ss_pred             ChHHHHHHhh-cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQ-DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP-LCDLLLC---ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~-L~~ll~~---~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..|..-+. +.++.++..|+..|-.++.++.+.+...+....+++. |+.++..   .+..|+.+++..+.......
T Consensus        54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f  132 (157)
T 1elk_A           54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF  132 (157)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence            3446666776 4688999999999999999988888777777777877 6777743   24578999998888777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	449
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-100
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-84
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-36
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-15
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-18
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-11
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	7e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-11
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-06
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	7e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-07
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	7e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-06
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	1e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.002
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  307 bits (785), Expect = e-100
 Identities = 229/447 (51%), Positives = 291/447 (65%), Gaps = 7/447 (1%)

Query: 2   QSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEV 61
             +    S  A         + LP M   + SDD   QL A  +FR++LS E   PID V
Sbjct: 56  SDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVV 115

Query: 62  IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS 121
           IQAG+VPR VEF+       LQ EAAW LTNIASGTS  TKV++D  AVP+F++LL + S
Sbjct: 116 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 175

Query: 122 DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181
            +V+EQA+WALGN+   S   R+ VL   A+ P+L  L    + S++R  TWTLSNLC+G
Sbjct: 176 VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRG 234

Query: 182 K-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
           K PQP +  V   LP LA+LI+  D E L + CW +S LSDG  + IQAVI+  +   LV
Sbjct: 235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 294

Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
           ELL H S  V  PALR VGNIVTG+D QTQ VIN G +P L  LL ++ K++IKKE+CWT
Sbjct: 295 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWT 353

Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT--QEQIKYL 358
           +SNITAGN +QIQAVIDA LI PLV LL+ AE+  KKEA WAISNA+  G    + I+YL
Sbjct: 354 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 413

Query: 359 VREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG 418
           V +GCIKPLCDLL  AD  I+ V L  LENILK+GEA K   +   ++N+ A  +E A G
Sbjct: 414 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGG 471

Query: 419 FKKIEDLKSHGNNGIREKAVTILETYW 445
            +KI + + + N+ I EKA  I+ETY+
Sbjct: 472 MEKIFNCQQNENDKIYEKAYKIIETYF 498

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  263 bits (673), Expect = 2e-84
 Identities = 193/427 (45%), Positives = 269/427 (62%), Gaps = 13/427 (3%)

Query: 24  LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
           +  +V G+ S++   QL+A    R+LLS E+  PID +I+AG++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 84  FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
           FE+AW LTNIASGTS  TK ++D GA+P F+ LLASP   + EQAVWALGNI       R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 144 NLVLHEEALIPLLAQLN----EHARLSMLRIGTWTLSNLCKGKPQ-PPFDQVRPVLPALA 198
           +LV+   A+ PLLA L            LR  TWTLSNLC+ K   PP D V  +LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 199 QLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258
           +L+H +D EVL + CW +S L+DG N++I+ V++ GV   LV+LLG     ++ PALR +
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA 318
           GNIVTG D QTQ VI+ GA+    +LL  N K +I+KE+ WT+SNITAG + QIQ V++ 
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI 378
           GL+  LV +L  A+F  +KEAAWAI+N T  GT EQI YLV  G I+PL +LL   D +I
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373

Query: 379 VTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
           + V L  + NI +  E        +G+  + + ++E   G  KIE L+ H N  + + ++
Sbjct: 374 IQVILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 426

Query: 439 TILETYW 445
            ++E Y+
Sbjct: 427 NLIEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 2e-36
 Identities = 64/448 (14%), Positives = 131/448 (29%), Gaps = 70/448 (15%)

Query: 66  IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
            +P+ V++L  +D  + Q   A+ + +         + +   G +   V LL SP+ +V+
Sbjct: 3   TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
           + A  AL N+V  S   +     +  +   ++ L       + +  T  L NL       
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 186 PFDQVRPVLPALAQLI---------------HLDDEEVLRNVCWTLSNLSDGTNDKIQAV 230
                  +     ++I                + D EV  N    L NLS     +    
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 231 IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN--HGAVPYLLALLINN 288
             +G+   L+  +     +      ++V N +      +  +          L     N 
Sbjct: 182 NYSGLIDSLMAYV-QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 289 HKKS------------IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK 336
           + +             +   +          N K    +  +  I   +NL+  ++ D  
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 337 KEAAWAISNATKAGTQEQIKY-----LVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391
            EA         A              ++E  +  +  LL   + ++V      L N+ +
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360

Query: 392 VGEAKKNRGSTI---------------------------------GDVNQYARLVEGAEG 418
                +  G+ +                                     Q A+    +  
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420

Query: 419 FKKIEDL-KSHGNNGIREKAVTILETYW 445
              I +L +S  +    E A  +L   W
Sbjct: 421 LNNIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 37/308 (12%), Positives = 86/308 (27%), Gaps = 28/308 (9%)

Query: 64  AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDD 123
           +G              P + F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 124 VR------EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA--------RLSMLR 169
            R      E  +  L N+             +       A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 170 IGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCW------TLSNLSDGT 223
                L           +      +     L+    ++     C       T S     +
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLA 283
                  ++      +  LL   +  V+      + N+          V+ +   P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 284 LLINNHKKS-----IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD-IKK 337
           LL ++   +     I   +C+TV N+ A   +  +    + ++  ++NL + +      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 338 EAAWAISN 345
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 319 GLIVP-LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377
           GL +P  V  L   +   +   A+ I +      +   + + + G I  L DLL   +  
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQN 59

Query: 378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARL 412
           +       L N++      K        + +   L
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (221), Expect = 7e-20
 Identities = 71/485 (14%), Positives = 130/485 (26%), Gaps = 81/485 (16%)

Query: 22  EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR 81
           +++ A+V  + + ++             LS  R   +  + ++G +P  V+ L       
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPV-DS 116

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
           + F A   L N+          +   G +   V LL   +          L  +   +  
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI 201
            + ++L       L+  +  +    +L   +  L  L       P       + AL   +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 202 HL---------------------------------------DDEEVLRNVCWTLSNLSDG 222
                                                    DD  V+      LSNL+  
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 223 TNDKIQAVIEAGVCGPLVELLGHPSPSVLIP-----ALRTVGNIVTGDDFQTQCVINHGA 277
                  V + G    LV  +        I      ALR + +     +     V  H  
Sbjct: 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356

Query: 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337
           +P ++ LL       + K +   + N+          + + G I  LV LL  A  D ++
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQR 415

Query: 338 EAAWAISNATK--------------------AGTQEQIKYLVREGCIKPLCDLLLCADPE 377
             +   +                        A        +     I     LL      
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 475

Query: 378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA 437
           I  V    L  + +  E               A  +E       + +L    N G+   A
Sbjct: 476 IQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELLHSRNEGVATYA 521

Query: 438 VTILE 442
             +L 
Sbjct: 522 AAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (214), Expect = 5e-19
 Identities = 79/485 (16%), Positives = 142/485 (29%), Gaps = 64/485 (13%)

Query: 15  LNLQTKLEI----LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRF 70
           +N Q   E+    +P +   +  +D  +  +AA    +L   E S     +    +V   
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-AIMRSPQMVSAI 64

Query: 71  VEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVW 130
           V  +   +        A  L N++         +   G +P  VK+L SP D V   A+ 
Sbjct: 65  VRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 123

Query: 131 ALGNIVAHSPGCRNLVLHEEALIPLLAQ-------------------------------- 158
            L N++ H  G +  V     L  ++A                                 
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 159 ----------LNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEV 208
                     +  +    +L   +  L  L       P       + AL   +    + +
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243

Query: 209 LRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 268
           ++N  WTL NLSD    +       G+ G LV+LLG    +V+  A   + N+   +   
Sbjct: 244 VQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 269 TQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA----GNRKQIQAVIDAGLIVPL 324
              V   G +  L+  ++    +    E                     AV     +  +
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 325 VNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK 384
           V LL         +A   +                 +G I  L  LL+ A  +       
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSM 419

Query: 385 G-----LENILKVGEAKKNRGSTIGD---VNQYARLVEGAEGFKKIEDLKSHGNNGIREK 436
           G         +++ E  +     +           ++ G         L       I+  
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 479

Query: 437 AVTIL 441
           A  +L
Sbjct: 480 AAGVL 484

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 6e-15
 Identities = 71/392 (18%), Positives = 125/392 (31%), Gaps = 26/392 (6%)

Query: 20  KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY 79
               L  MVA + +  N   L   T   ++L+         ++ +G     V  +    Y
Sbjct: 141 LAGGLQKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199

Query: 80  PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS 139
            +L       +  + S  S N   +++ G +      L  PS  + +  +W L N+   +
Sbjct: 200 EKLL-WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 140 PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQ 199
                +      L+ LL   + +       I +    N  K K           L     
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 200 LI--HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257
                 D  E        L++          AV        +V+LL  PS   LI A   
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKK--------------------ES 297
           +   +         +   GA+P L+ LL+  H+ + ++                    E 
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438

Query: 298 CWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKY 357
           C    +I A +      +     I   V LL     +I++ AA  +     A  +E  + 
Sbjct: 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL--AQDKEAAEA 496

Query: 358 LVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389
           +  EG   PL +LL   +  + T     L  +
Sbjct: 497 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 5e-18
 Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 6/249 (2%)

Query: 52  IERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVP 111
           +E+      V+   + P   E     D  + +  A  +L ++      N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMD-NAADFCQLSGMH 61

Query: 112 IFV-KLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRI 170
           + V + L + +  +R +A   +G    +    +  VL   AL  LL  L+  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 171 GTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQA 229
             + +S L + +               L + +    +++     + L NL  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 230 VIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH 289
           +   G+   LV L+           L  + ++VT      +          L  LL +  
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRC 239

Query: 290 KKSIKKESC 298
           +   + E  
Sbjct: 240 QLLQQHEEY 248

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 41/308 (13%), Positives = 92/308 (29%), Gaps = 21/308 (6%)

Query: 70  FVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAV 129
            +   L +    ++    W L+  A               +   +K +   +  V+E A 
Sbjct: 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 499

Query: 130 WALGNIVAHSPGCRNLVLHE--EALIPLLAQLNEHARLSMLR-IGTWTLSNLCKGKPQPP 186
            A   +   +       L    + L+   ++      L +   IGT   S          
Sbjct: 500 SAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY 559

Query: 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE-------------- 232
              + P L      +  D+++ L  +   LS+++           E              
Sbjct: 560 IQMLMPPLIQKWN-MLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL 618

Query: 233 --AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK 290
             A +     +    P    +I AL  +  +  G     + ++    +  L+   + +  
Sbjct: 619 AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 678

Query: 291 KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350
             +++ S   + ++T    + ++  I    +  L   L      +   A WAI   +   
Sbjct: 679 PEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQM 737

Query: 351 TQEQIKYL 358
             E   Y+
Sbjct: 738 GIEMQPYI 745

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 43/377 (11%), Positives = 106/377 (28%), Gaps = 24/377 (6%)

Query: 34  DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI 93
           D+       +    R  S      +  V +  ++P  +  L    +          +  +
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419

Query: 94  ASGTSVNTKVLIDHGA--VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA 151
            +      + +I +    +P  ++ L+     VR    W L                +  
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479

Query: 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRN 211
           +  LL ++ +  +  +        + L +         +  +L  L         + L  
Sbjct: 480 MTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI 538

Query: 212 VCWTLSNLSDGTNDKI-QAVIEAGVCGPLVELLGHP--SPSVLIPALRTVGNIVT--GDD 266
           +   +  L+D     + +      +  PL++           L P L  + ++ T     
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 598

Query: 267 FQT-------------QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313
           F               Q  +    +            K     +   +S +  G    I+
Sbjct: 599 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 658

Query: 314 AVIDAGLIVP-LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
            ++    I+  +   +QD   ++++ +   + + TKA  Q     +     +  L   L 
Sbjct: 659 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLN 716

Query: 373 CADPEIVTVCLKGLENI 389
                +       +  I
Sbjct: 717 PEFISVCNNATWAIGEI 733

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 50/321 (15%), Positives = 100/321 (31%), Gaps = 13/321 (4%)

Query: 21  LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYP 80
              L  ++  + S+D   +  +    +  +           +   I    +   + +  P
Sbjct: 45  NNYLIFVLTKLKSEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLN-NIGDSSP 102

Query: 81  RLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140
            ++     ++T IAS   +          +P    LL S   +  E A  AL  I   S 
Sbjct: 103 LIRATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 158

Query: 141 GCRN---LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPAL 197
              +   L      +IP   Q  +H+   +       ++     + Q     +      L
Sbjct: 159 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENL 218

Query: 198 AQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257
             L   ++ EV +NVC  L  L +   D++   +   +   +++       +V   AL  
Sbjct: 219 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEA 274

Query: 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317
               +T  +      +    +P L+ +L+N  K S                    +  I 
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 318 AGLIVPLVNLLQDAEFDIKKE 338
                      Q  E  I++E
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEE 355

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 5e-10
 Identities = 46/310 (14%), Positives = 101/310 (32%), Gaps = 25/310 (8%)

Query: 80  PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS 139
              +F A   L       S+      +   V + +KLL   + +V+  AV  LG +V+  
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 140 PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQ--VRPVLPAL 197
                +    + L   +    E  R     I +  L  +    P           V   +
Sbjct: 77  KE-YQVETIVDTLCTNMLSDKEQLR----DISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 198 AQLIH-----LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
              +       +D  V       ++++       +     + +   L+  L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 253 PALRTVGNIVT--GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310
             +  +G++V   G+            + +LL+ L  N   S  +     ++ I+     
Sbjct: 191 RTIIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244

Query: 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL 370
           +I   ++  +I  +V      + ++++    A  +  +   +E   ++     I  +C  
Sbjct: 245 RIGEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST---IINICLK 300

Query: 371 LLCADPEIVT 380
            L  DP    
Sbjct: 301 YLTYDPNYNY 310

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 38/289 (13%), Positives = 86/289 (29%), Gaps = 44/289 (15%)

Query: 6    FLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAG 65
            F  +      N    +++L  +   V+S   ++  + +           +    +   A 
Sbjct: 755  FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAV 814

Query: 66   IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
            +     +         ++  A   L  +     ++ ++ +      + ++  +SPS++V+
Sbjct: 815  VGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEEVK 870

Query: 126  EQAVWALGNIVAHSP--------------------------------GCRNLVLHEEALI 153
              A +ALG+I   +                                     L  + E + 
Sbjct: 871  SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIW 930

Query: 154  PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVC 213
             LL +  E A      +    L  L    P+        +LP L   +         +V 
Sbjct: 931  ALLLKHCECAEEGTRNVVAECLGKLTLIDPE-------TLLPRLKGYLISGSSYARSSVV 983

Query: 214  WTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262
              +          I  +++    G  ++ L  P  +V   AL T  +  
Sbjct: 984  TAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 109  AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSML 168
             +P     L S S   R   V A+   ++  P   + +L     I    +  E   L++ 
Sbjct: 963  LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVR 1020

Query: 169  RIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEV 208
            R+   T ++    KP    D +  VLP L     +  E +
Sbjct: 1021 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELI 1060

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 32  WSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT 91
             DD+    +AA     LL    +   D+++   +   F++  ++    R +  A     
Sbjct: 336 DDDDDWNPCKAAGVCLMLL---ATCCEDDIVPHVL--PFIKEHIKNPDWRYRDAAVMAFG 390

Query: 92  NIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA 151
            I  G   +    +   A+P  ++L+  PS  VR+ A W +G I    P      +++  
Sbjct: 391 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVY 447

Query: 152 LIPLLAQL 159
           L PLL  L
Sbjct: 448 LAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 38/273 (13%), Positives = 80/273 (29%), Gaps = 25/273 (9%)

Query: 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178
            PS++V+  A  AL N +  +    +       ++ ++ +  +     +       L  +
Sbjct: 184 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 243

Query: 179 CKGKPQPPFDQVRPV-LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCG 237
                Q     + P       + +  D +EV        SN+ D   D      EA   G
Sbjct: 244 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 303

Query: 238 PLVEL----LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA---------------- 277
              E         +   L+P L         +D          A                
Sbjct: 304 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV 363

Query: 278 ---VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD 334
              +P++   + N   +  +  +      I  G        +    +  L+ L++D    
Sbjct: 364 PHVLPFIKEHIKNPDWR-YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 422

Query: 335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPL 367
           ++  AAW +    +   +  I  +     ++ L
Sbjct: 423 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLR 169
           +P   + + +P    R+ AV A G I    P    L       +P L +L +   + +  
Sbjct: 367 LPFIKEHIKNPDWRYRDAAVMAFGCI-LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 425

Query: 170 IGTWTLSNLCKGKPQPPFDQ--VRPVLPALAQ 199
              WT+  +C+  P+   +   + P+L  L +
Sbjct: 426 TAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 31/310 (10%), Positives = 67/310 (21%), Gaps = 47/310 (15%)

Query: 41  EAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100
             A++   L +  + L  DE+ +          LL +     +  +A VL          
Sbjct: 4   RKASKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG------ 47

Query: 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN 160
                   AV + ++  +  +   R+   + LG I        N          L     
Sbjct: 48  -----GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMAL 96

Query: 161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCW------ 214
                 +      + +  CK  P      V                     +        
Sbjct: 97  NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT 156

Query: 215 -TLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
             L        +       A                 +         +            
Sbjct: 157 IPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 216

Query: 274 NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEF 333
           +   +  L   L  N    +  +       +  G++  +  +           L +  + 
Sbjct: 217 DKRVLSVLCDELKKNT---VYDDIIEAAGEL--GDKTLLPVLDTM--------LYKFDDN 263

Query: 334 DIKKEAAWAI 343
           +I   A   +
Sbjct: 264 EIITSAIDKL 273

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 22/161 (13%)

Query: 107 HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLA--QLNEHAR 164
           +  V     L+    + VR    + L            L+  E+  + +    +L     
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLP-----REQLSALMFDEDREVRITVADRLPLEQL 119

Query: 165 LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVC------WTLSN 218
             M     + +               R     L + +  +D +V + V            
Sbjct: 120 EQMAADRDYLVRAYV---------VQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLM 170

Query: 219 LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259
             D   +  + V        L+ELL  P  +V + A+    
Sbjct: 171 TQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 11/148 (7%)

Query: 12  APSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFV 71
           A  L ++   E L ++      D      EAAT    L  +      +      I+P+ +
Sbjct: 430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN--LKKLVEKFGKEWAHAT-IIPKVL 486

Query: 72  EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWA 131
                 +Y        + +  ++     +   +     +P  +++   P  +VR     +
Sbjct: 487 AMSGDPNYLHRM-TTLFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKS 542

Query: 132 LGNIVAHSPGCRNLVLHEEALIPLLAQL 159
           L  I             +  + P+L +L
Sbjct: 543 LQKIGPILDNS----TLQSEVKPILEKL 566

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 16/198 (8%)

Query: 66  IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVR 125
            +   +  L  +   R++      +  +A    V      D     + +  L      +R
Sbjct: 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIR 458

Query: 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185
           E A   L  +V               ++ +    N   R++ L      ++ L +   Q 
Sbjct: 459 EAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC----INVLSEVCGQD 514

Query: 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSD--GTNDKIQAVIEAGVCGPLVELL 243
              +   +LP + ++       V  NV  +L  +      +     V        L +L 
Sbjct: 515 ITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI-----LEKLT 567

Query: 244 GHPSPSVLIPALRTVGNI 261
                 V   A   +  +
Sbjct: 568 QDQDVDVKYFAQEALTVL 585

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 29/246 (11%), Positives = 74/246 (30%), Gaps = 21/246 (8%)

Query: 33  SDDNSMQLEAATQFRRLLS----------IERSLP-IDEVIQAGIVPRFVEFLLREDYPR 81
           +     ++ AA   +  L            +R +  +    +  I    +  L+  + PR
Sbjct: 52  NTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIE-PR 110

Query: 82  LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDD-VREQAVWALGNIVAHSP 140
           +   AA ++  IA     +         + I V    +   + V+  ++ ALG +   + 
Sbjct: 111 IANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167

Query: 141 GCRNLVLHE--EALIPLLAQLNEHARLSMLRIGTWTLSN---LCKGKPQPPFDQVRPVLP 195
                ++      LI ++           +R+          +          +   ++ 
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227

Query: 196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPAL 255
            + +    +D EV       L  +       ++  +E  +    +  +  P+  V    +
Sbjct: 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTV 287

Query: 256 RTVGNI 261
                I
Sbjct: 288 EFWSTI 293

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 26/125 (20%)

Query: 117 LASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH--------ARLSML 168
           +A  +  VR     AL  +             +EA  PLL  L+          A +   
Sbjct: 1   MADENKWVRRDVSTALSRM------------GDEAFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 169 RIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ 228
                 +  L K               +L Q+        +  +         GT    +
Sbjct: 49  FQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKL------AETGTGFARK 102

Query: 229 AVIEA 233
             +  
Sbjct: 103 VAVNY 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	449
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.78
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.75
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.66
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.6
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.58
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.51
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.37
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.3
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.29
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.24
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.19
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.13
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.06
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.83
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.81
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.54
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.39
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.12
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.85
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.74
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.55
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.42
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.93
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.73
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	95.09
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	94.53
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.39
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	91.41
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	91.27
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	90.58
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.86
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	89.1
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	88.99
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	84.05

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.3e-48  Score=368.80  Aligned_cols=426  Identities=53%  Similarity=0.813  Sum_probs=390.2

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      ...+.++.+++.+.+++...+..|+..++++++....++...+++.|++|.|+++++++.+++++..|+++|.+++.+++
T Consensus        73 ~~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~  152 (503)
T d1wa5b_          73 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS  152 (503)
T ss_dssp             ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence            34567999999999999999999999999998877678889999999999999999976658899999999999999888


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      .....+...|+++.++.+|.+++.+++..|+|+|+|++.+++..+..+.+.|++++++.++ .+.+..+++.++|++.++
T Consensus       153 ~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl  231 (503)
T d1wa5b_         153 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNL  231 (503)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999998 677789999999999999


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          179 CKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       179 ~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      +... +........+++|.+..++.++|++++..+++++.+++...++....+.+.|+++.++.++.++++.++..++.+
T Consensus       232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~  311 (503)
T d1wa5b_         232 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA  311 (503)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHH
Confidence            9876 555666778999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK  337 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~  337 (449)
                      +++++.+++.....+.+.|+++.+..+++++ ++.+++.++|+++|++.+++.....+++.|+++.++.++.+.+.+++.
T Consensus       312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~  390 (503)
T d1wa5b_         312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK  390 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHH
Confidence            9999999888888889999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHh
Q 039940          338 EAAWAISNATKAG--TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEG  415 (449)
Q Consensus       338 ~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (449)
                      .|+|+|.|++.++  .++....+++.|+++.|++++++.|+++...++++|.++++.++.......  ...+.+...+.+
T Consensus       391 ~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~--~~~~~~~~~iee  468 (503)
T d1wa5b_         391 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEK  468 (503)
T ss_dssp             HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHHHHHHH
Confidence            9999999999864  356788899999999999999999999999999999999988765443211  235788999999


Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940          416 AEGFKKIEDLKSHGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       416 ~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      +||++.|+.|+.|++++++++|.+++++||++|
T Consensus       469 ~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         469 AGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             TTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999999999999987

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-47  Score=357.93  Aligned_cols=418  Identities=46%  Similarity=0.764  Sum_probs=383.6

Q ss_pred             hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940           21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN  100 (449)
Q Consensus        21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  100 (449)
                      ...++.+++.+.|++++.+..|+..++++++....+....+++.|++|.|+++|++.++++++..|+++|.+++.++++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            46799999999999999999999999999876656668889999999999999987655789999999999999888889


Q ss_pred             hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc----cHHHHHHHHHHHH
Q 039940          101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA----RLSMLRIGTWTLS  176 (449)
Q Consensus       101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~l~  176 (449)
                      +..+.+.|+++.++.+|.+++.++++.|+++|+|++.+++..+..+.+.|++..++..+....    .....+.++|++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999985433    2356778899999


Q ss_pred             HhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHH
Q 039940          177 NLCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPAL  255 (449)
Q Consensus       177 ~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  255 (449)
                      +++... +........++++.+..++.+++++++..+++++.+++..+++....+.+.|+++.++.++.+++++++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            999876 3445556788999999999999999999999999999998888878788889999999999999999999999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH
Q 039940          256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI  335 (449)
Q Consensus       256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v  335 (449)
                      .++++++.+++.....+++.|+++.+..+++++ +++++..|++++++++.+++.....+.+.|+++.++.++.++++++
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v  330 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  330 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHH
Confidence            999999998888888899999999999999998 9999999999999999988888888999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHh
Q 039940          336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEG  415 (449)
Q Consensus       336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (449)
                      +..|++++.+++..++.+....+.+.|+++.|+++++++|++++..++++|.++++..+...       ..+.+...+++
T Consensus       331 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~~~~~~~~~~~  403 (434)
T d1q1sc_         331 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEE  403 (434)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHH
Confidence            99999999999998888999999999999999999999999999999999999999887543       35678999999


Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          416 AEGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       416 ~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      .||++.|+.|++|+|+++++.|.++|++||+
T Consensus       404 ~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         404 CGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=284.31  Aligned_cols=377  Identities=24%  Similarity=0.337  Sum_probs=331.5

Q ss_pred             CCchhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 039940           13 PSLNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT   91 (449)
Q Consensus        13 ~~~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~   91 (449)
                      ++.....+.|++|.+++.+++ .++.++..|+++|.+++++. ......+...|+++.++.++.+++ .+++..|+++|+
T Consensus       110 ~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~  187 (503)
T d1wa5b_         110 PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALG  187 (503)
T ss_dssp             CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred             chHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHH
Confidence            345567788999999999986 56889999999999998765 556777889999999999999998 899999999999


Q ss_pred             HhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHH
Q 039940           92 NIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIG  171 (449)
Q Consensus        92 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  171 (449)
                      |++..+++.+..+.+.|+++.|+.++.+.+..++..++|++.+++.............++++.++..+ .+.+++++..+
T Consensus       188 nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~  266 (503)
T d1wa5b_         188 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDA  266 (503)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHH
T ss_pred             HHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHH
Confidence            99998899999999999999999999999999999999999999977655555555678899999988 77889999999


Q ss_pred             HHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcc
Q 039940          172 TWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV  250 (449)
Q Consensus       172 ~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v  250 (449)
                      +|++.+++...+.. ......++++.++.++.+++..++..++.++++++.+.+.....+.+.|+++.+..++.++++.+
T Consensus       267 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i  346 (503)
T d1wa5b_         267 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI  346 (503)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred             HHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHH
Confidence            99999999876332 23344789999999999999999999999999999998888888999999999999999999999


Q ss_pred             hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHH
Q 039940          251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNL  327 (449)
Q Consensus       251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~l  327 (449)
                      +..++|+++|++.+++.....+.+.++++.++.++.++ +.+++.+|+|+++|++.   ..++.+..+++.|+++.|+++
T Consensus       347 ~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~  425 (503)
T d1wa5b_         347 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL  425 (503)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHH
Confidence            99999999999999888888899999999999999999 99999999999999996   235667788899999999999


Q ss_pred             hhcCchhHHHHHHHHHHHhhccCC----------HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940          328 LQDAEFDIKKEAAWAISNATKAGT----------QEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       328 l~~~~~~v~~~a~~aL~~l~~~~~----------~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~  393 (449)
                      +...++++...++.+|.++...+.          ......+.+.|+++.|..+..++++++...|.++|..+|..+
T Consensus       426 L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         426 LEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999875421          123445667899999999888999999999999999888543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.4e-35  Score=273.07  Aligned_cols=372  Identities=26%  Similarity=0.410  Sum_probs=324.8

Q ss_pred             chhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 039940           15 LNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI   93 (449)
Q Consensus        15 ~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l   93 (449)
                      .+...+.|++|.++++|++ +++.++..|+++|.+++++. ......+++.|+++.++.++.+++ .+++..|+++|+++
T Consensus        49 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl  126 (434)
T d1q1sc_          49 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNI  126 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHH
Confidence            4566788999999999975 56889999999999998764 456778899999999999999988 89999999999999


Q ss_pred             cCCChhhhHHHHhCCChHHHHHhhCCCC-----hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHH
Q 039940           94 ASGTSVNTKVLIDHGAVPIFVKLLASPS-----DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSML  168 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~  168 (449)
                      +.++++.+..+.+.|+++.++.++...+     ......+++++.+++...+.........+.++.+..++ ++.+++++
T Consensus       127 ~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~  205 (434)
T d1q1sc_         127 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVL  205 (434)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHH
T ss_pred             hccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchh
Confidence            9988899999999999999999997644     34566788999999887765555555667788888887 77889999


Q ss_pred             HHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC
Q 039940          169 RIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS  247 (449)
Q Consensus       169 ~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~  247 (449)
                      ..+++++.+++...+.. ......++++.++.++.+++++++..++.++.+++.+++.....+++.|+++.+..++.+++
T Consensus       206 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~  285 (434)
T d1q1sc_         206 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK  285 (434)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS
T ss_pred             hhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc
Confidence            99999999999876322 22334789999999999999999999999999999988888888899999999999999999


Q ss_pred             CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHH
Q 039940          248 PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVN  326 (449)
Q Consensus       248 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~  326 (449)
                      ++++..+++++++++..+......+.+.|+++.++.++.++ +++++..|+|+++|++. ++++....+.+.|+++.|++
T Consensus       286 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~  364 (434)
T d1q1sc_         286 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  364 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence            99999999999999998888888889999999999999999 99999999999999987 56778888999999999999


Q ss_pred             HhhcCchhHHHHHHHHHHHhhcc----CC-HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940          327 LLQDAEFDIKKEAAWAISNATKA----GT-QEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL  390 (449)
Q Consensus       327 ll~~~~~~v~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~  390 (449)
                      ++..++++++..++++|.++...    +. ......+.+.|+++.|..+..+++++++..|.++|.++|
T Consensus       365 ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         365 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999753    22 234556667899999999989999999999999998875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-32  Score=265.47  Aligned_cols=406  Identities=19%  Similarity=0.186  Sum_probs=347.8

Q ss_pred             hhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940           16 NLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS   95 (449)
Q Consensus        16 ~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~   95 (449)
                      ....+.|++|.++++|+++++.++..|+++|.+++.++ ......+.+.|+++.|+.++++++ ++++..+++++.+++.
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhh
Confidence            45667799999999999999999999999999998765 556677889999999999999998 8999999999999998


Q ss_pred             CChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940           96 GTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT  174 (449)
Q Consensus        96 ~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  174 (449)
                      .+++.+..+...|+++.++.++.. ....++..+++++.+++.. +..+..+.+.|+++.++.++ .+.+..++..++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~  250 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWT  250 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHh-cccchhhhhhhhhH
Confidence            888899999999999999999965 5578999999999999764 56777788999999999998 77889999999999


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchh
Q 039940          175 LSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLI  252 (449)
Q Consensus       175 l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~  252 (449)
                      +.+++.....  .....++++.++.++.+++..++..+++++.+++.+++.....+.+.++++.++..+..  +.++++.
T Consensus       251 l~~ls~~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~  328 (529)
T d1jdha_         251 LRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE  328 (529)
T ss_dssp             HHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhccccccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHH
Confidence            9999866432  22336899999999999999999999999999998888888888899999999998853  5567888


Q ss_pred             hHHHHHHHhhcCChh---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940          253 PALRTVGNIVTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ  329 (449)
Q Consensus       253 ~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~  329 (449)
                      .+++++++++.....   ....+...++++.++.++..+.+..++..+++++.|++.. ++....+.+.|+++.+++++.
T Consensus       329 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~  407 (529)
T d1jdha_         329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLV  407 (529)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHh
Confidence            999999999866432   3345667899999999998874567888999999999775 455677889999999999997


Q ss_pred             cCc----------------------hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940          330 DAE----------------------FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE  387 (449)
Q Consensus       330 ~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~  387 (449)
                      +.+                      .++...++.++..++.  .+..+..+.+.|+++.|++++.++++.++..++++|.
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  485 (529)
T d1jdha_         408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC  485 (529)
T ss_dssp             HHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            543                      3566777788888876  5677777788999999999999999999999999999


Q ss_pred             HHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940          388 NILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       388 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      ++....+.              .+.+.+.|+++.|.+|..++|++++..|...+.+.
T Consensus       486 ~L~~~~~~--------------~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         486 ELAQDKEA--------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHTTSHHH--------------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHhcChhh--------------HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            98754332              67889999999999999999999999999988753

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-32  Score=263.44  Aligned_cols=404  Identities=18%  Similarity=0.183  Sum_probs=341.9

Q ss_pred             hhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940           20 KLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS   98 (449)
Q Consensus        20 ~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~   98 (449)
                      ..+.++.+++.|++ ++++++..|+.+|.+++..  .+....+++.|++|.|+.+|++++ ++++..|+++|.+++.+++
T Consensus        57 ~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~  133 (529)
T d1jdha_          57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQE  133 (529)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCT
T ss_pred             hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccc
Confidence            35779999999975 6789999999999999643  677788999999999999999998 8999999999999999888


Q ss_pred             hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940           99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus        99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                      ..+..+.+.|+++.|+.++++++++++..+++++.+++..++..+..+...|+++.++.++.......++..+++++.++
T Consensus       134 ~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~l  213 (529)
T d1jdha_         134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  213 (529)
T ss_dssp             THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            88888999999999999999999999999999999999888888888889999999999997777788999999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      +............++++.+..++.+++.+++..+++++.+++......   ....|+++.|+.++.++++.++..++++|
T Consensus       214 s~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             hccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHH
Confidence            987655555556889999999999999999999999999998654422   22247899999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHhhcC-ch
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLIN-NHKKSIKKESCWTVSNITAGN---RKQIQAVIDAGLIVPLVNLLQDA-EF  333 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~---~~~~~~l~~~~~~~~L~~ll~~~-~~  333 (449)
                      ++++..++.....+.+.++++.++..+.. +..+.++..+++++.+++...   ......+...++++.+++++..+ +.
T Consensus       291 ~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~  370 (529)
T d1jdha_         291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW  370 (529)
T ss_dssp             HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred             HhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchH
Confidence            99999888888888899999999998843 226778999999999998632   23444566789999999999876 45


Q ss_pred             hHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH----------------------HHHHHHHHHHHHHHH
Q 039940          334 DIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP----------------------EIVTVCLKGLENILK  391 (449)
Q Consensus       334 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~----------------------~~~~~~~~~l~~l~~  391 (449)
                      .++..+++++.+++..  ++....+.+.|+++.|++++.+.+.                      ++...+..++..+..
T Consensus       371 ~~~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~  448 (529)
T d1jdha_         371 PLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR  448 (529)
T ss_dssp             HHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc
Confidence            7888999999999884  4667788899999999999865433                      455566666666654


Q ss_pred             hhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940          392 VGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW  445 (449)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~  445 (449)
                      ...              -...+.+.|+++.|.++..+++++++..+...+..+.
T Consensus       449 ~~~--------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  488 (529)
T d1jdha_         449 DVH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             SHH--------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CHH--------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            322              2567888999999999999999999999999887754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-27  Score=221.72  Aligned_cols=366  Identities=17%  Similarity=0.189  Sum_probs=278.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940           65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN  144 (449)
Q Consensus        65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  144 (449)
                      ..+|.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|++|.|+++|++++++++..|+++|++++.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            35899999999999 89999999999999998999999999999999999999999999999999999999988888999


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----------------cCCCHHH
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI----------------HLDDEEV  208 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll----------------~~~~~~~  208 (449)
                      .+.+.|+++.++..+..+.+++++..+++++.+++.......... ..+++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-HHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHH-hcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999778889999999999999999864333333 33444433332                2346889


Q ss_pred             HHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC------CCcchhhHHHHHHHhhc-------------------
Q 039940          209 LRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP------SPSVLIPALRTVGNIVT-------------------  263 (449)
Q Consensus       209 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~v~~~a~~~l~~l~~-------------------  263 (449)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.+...                   
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999987766555555568888888887531      11111111111111100                   


Q ss_pred             -------------------------------CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--
Q 039940          264 -------------------------------GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK--  310 (449)
Q Consensus       264 -------------------------------~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~--  310 (449)
                                                     ........+...++++.++.++....++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                           00111111223346677888876664788899999999999864321  


Q ss_pred             ---HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHH
Q 039940          311 ---QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTV  381 (449)
Q Consensus       311 ---~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~  381 (449)
                         ....+.+.|+++.|++++.+++++++..+++++.+++..  ++....+ ..++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               223344689999999999999999999999999999874  3444444 44678889988854      24568999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCC
Q 039940          382 CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS-HGNNGIREKAVTILETYWLKG  448 (449)
Q Consensus       382 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~i~~~a~~~i~~~~~~~  448 (449)
                      ++.+|.++....+.             ....+.+.|+++.|.++.. ++++.+++.|..++.++|...
T Consensus       397 a~~~L~~l~~~~~~-------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHhcCCHH-------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence            99999999865433             3677889999999999965 567899999999999987653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-26  Score=214.08  Aligned_cols=364  Identities=15%  Similarity=0.156  Sum_probs=269.7

Q ss_pred             hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940           22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT  101 (449)
Q Consensus        22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  101 (449)
                      ..+|.++++|++++++++..|+++|.+++.++ ++.+..+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            35899999999999999999999999998655 778899999999999999999998 8999999999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHH---------------cccccH
Q 039940          102 KVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL---------------NEHARL  165 (449)
Q Consensus       102 ~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l---------------~~~~~~  165 (449)
                      ..+.+.|+++.++.++.+ .+++++..++++|++++...... ...... +++.++..+               ....+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHH-HHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            999999999999998865 67899999999999998765443 333232 334444333               134467


Q ss_pred             HHHHHHHHHHHHhhcCCCCCChh-hhhchHHHHHHhhcCCC------HHHHHHHHHHHHHcc------------------
Q 039940          166 SMLRIGTWTLSNLCKGKPQPPFD-QVRPVLPALAQLIHLDD------EEVLRNVCWTLSNLS------------------  220 (449)
Q Consensus       166 ~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~------~~~~~~~~~~l~~l~------------------  220 (449)
                      .++..+++++.+++......... ...++++.++.++.+..      ......+...+.+..                  
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  237 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence            89999999999998876333222 23567787777765321      111111111111100                  


Q ss_pred             --------------------------------cCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChh
Q 039940          221 --------------------------------DGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTGDDF  267 (449)
Q Consensus       221 --------------------------------~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~  267 (449)
                                                      .............++++.++.++.. .++.++..+.+++.+++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (457)
T d1xm9a1         238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence                                            0000011112223456666666654 4556778888899998765432


Q ss_pred             -----hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC------chhHH
Q 039940          268 -----QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA------EFDIK  336 (449)
Q Consensus       268 -----~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~v~  336 (449)
                           ....+.+.++++.|+.++.++ ++.++..+++++++++... +....+. .++++.++.++...      +.+++
T Consensus       318 ~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~-~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~  394 (457)
T d1xm9a1         318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-LLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-GGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh-hHHHHHH-HhhHHHHHHHHhccccCcCCcHHHH
Confidence                 223344789999999999999 9999999999999998643 3443443 46899999998643      46799


Q ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhh
Q 039940          337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~  393 (449)
                      ..|+.+|.+++.. +++.++.+.+.|+++.|+.++.+. ++.+++.|..+|++|+...
T Consensus       395 ~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence            9999999999976 678888899999999999999865 6789999999999997543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.2e-20  Score=160.26  Aligned_cols=229  Identities=14%  Similarity=0.117  Sum_probs=189.7

Q ss_pred             CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHH
Q 039940          203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYL  281 (449)
Q Consensus       203 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L  281 (449)
                      ..+.+.+..++.+|.+++...+ ....+...|+++.++. ++.+++++++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            3467788999999999996544 4566888899998875 7888899999999999999999888888888899999999


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHc
Q 039940          282 LALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVRE  361 (449)
Q Consensus       282 ~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  361 (449)
                      +.++.+..++.++..+++++++++.+++.....+.+.|+++.|++++.++++.++..++++|.+++.. +++....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997654889999999999999999999888899999999999999999999999999999999876 56778888999


Q ss_pred             CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHh--cchHHHHHHH-----hcCCCHHHH
Q 039940          362 GCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEG--AEGFKKIEDL-----KSHGNNGIR  434 (449)
Q Consensus       362 ~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l-----~~~~~~~i~  434 (449)
                      |+++.|+.++++++++++..++++|.++....+...             ..+..  .+....+..+     ......+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-------------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~  252 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-------------RECREPELGLEELLRHRCQLLQQHEEYQEEL  252 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH-------------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH-------------HHHHHhhhhHHHHHHHHHHhccchHHHHHHH
Confidence            999999999999999999999999999986554421             12222  2222233322     122345567


Q ss_pred             HHHHHHHHHhcC
Q 039940          435 EKAVTILETYWL  446 (449)
Q Consensus       435 ~~a~~~i~~~~~  446 (449)
                      +.+..++++||+
T Consensus       253 ~~~~~ll~~~~~  264 (264)
T d1xqra1         253 EFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            889999999995

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-20  Score=161.30  Aligned_cols=194  Identities=15%  Similarity=0.116  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHH
Q 039940           80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQ  158 (449)
Q Consensus        80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  158 (449)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. +++++++++|..|+++|++++.+++..+..+.+.|+++.++.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6788999999999997 7788889999999999886 7788999999999999999999999888889999999999999


Q ss_pred             HcccccHHHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHH
Q 039940          159 LNEHARLSMLRIGTWTLSNLCKGKPQ-PPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCG  237 (449)
Q Consensus       159 l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  237 (449)
                      +..+.++.++..+++++.+++.+.+. .......++++.+++++.+++..++..++++|.+++..++.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            97778899999999999999988743 33445588999999999999999999999999999988888888899999999


Q ss_pred             HHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940          238 PLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN  274 (449)
Q Consensus       238 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  274 (449)
                      .|+.++.+++++++..++++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999988777666554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-17  Score=158.55  Aligned_cols=340  Identities=13%  Similarity=0.133  Sum_probs=232.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-chhh
Q 039940           66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GCRN  144 (449)
Q Consensus        66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~  144 (449)
                      ++|.+..++++++ ..++..++.+|++++....   .......+++.+..++.+.+.++|..++..+..++..-. ....
T Consensus       243 i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         243 VMPTLRQAAEDKS-WRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHhccccc-HHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3444455555444 4555555555555543111   112223456777777777788888888888877764322 1222


Q ss_pred             hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940          145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                      ...-...++.+...+ .+.++.++..++.++..++....  ........+|.+..++.+++++++..++.++..+...-.
T Consensus       319 ~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~~--~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~  395 (588)
T d1b3ua_         319 NVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhccc--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence            222234455555665 67788888888877776654321  122346678899999999999999998888776654321


Q ss_pred             hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940          225 DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI  304 (449)
Q Consensus       225 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl  304 (449)
                      .  . .....+++.+..++.+.++.+|..++.+++.++.....   ..+...+.+.+..++.++ ...+|..|+++++.+
T Consensus       396 ~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l  468 (588)
T d1b3ua_         396 I--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKL  468 (588)
T ss_dssp             H--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred             h--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHH
Confidence            1  1 12235778899999999999999999999888643111   112233566788888888 899999999999999


Q ss_pred             hcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 039940          305 TAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCL  383 (449)
Q Consensus       305 ~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~  383 (449)
                      +.. .++    .....+++.+.+++.+++...|..++.++..+......    ......+++.+..+++++.+.+|..++
T Consensus       469 ~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~  540 (588)
T d1b3ua_         469 VEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            752 222    12335888999999999999999999999998764222    223445899999999999999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940          384 KGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET  443 (449)
Q Consensus       384 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~  443 (449)
                      ++|..+....+...           +..     .....++.++++++.+|+..|.+.++.
T Consensus       541 ~~l~~i~~~~~~~~-----------~~~-----~i~~~l~~L~~D~d~dVr~~A~~al~~  584 (588)
T d1b3ua_         541 KSLQKIGPILDNST-----------LQS-----EVKPILEKLTQDQDVDVKYFAQEALTV  584 (588)
T ss_dssp             HHHHHHGGGSCHHH-----------HHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHh-----------HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999976654321           122     235778899999999999999998875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4e-16  Score=150.72  Aligned_cols=384  Identities=11%  Similarity=0.082  Sum_probs=282.5

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      ....++.+.++++++++.+|..|+..+..++..-.    .......+++.+..++++++ +.++..|+.++..++...+.
T Consensus       162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~  236 (588)
T d1b3ua_         162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ  236 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCH
Confidence            34457778888889999999999999999986431    22334567888889999888 89999999999998763222


Q ss_pred             hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940          100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC  179 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~  179 (449)
                      .   .....+++.+..++.++++.+|..++.+|++++..-+   ........++.+...+ .+.+++++..++..+..++
T Consensus       237 ~---~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         237 E---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             H---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHH
Confidence            1   1122368999999999999999999999999874321   1222344567777777 7888999999999999998


Q ss_pred             cCCCCCCh--hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940          180 KGKPQPPF--DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT  257 (449)
Q Consensus       180 ~~~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  257 (449)
                      ........  .....++|.+...+.+.++.++..+..++..++..-..  . .....+++.+...+.+++++++..++.+
T Consensus       310 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~  386 (588)
T d1b3ua_         310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISN  386 (588)
T ss_dssp             HTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTT
T ss_pred             HHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            87533322  23477889999999999999999998888877632211  1 1122578899999999999999998888


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940          258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIK  336 (449)
Q Consensus       258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~  336 (449)
                      ++.+......  . -....+++.+..++++. ++.+|..++.++..++.. ..+    .....+.+.+..++.++...+|
T Consensus       387 l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~D~~~~VR  458 (588)
T d1b3ua_         387 LDCVNEVIGI--R-QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIR  458 (588)
T ss_dssp             CHHHHHHSCH--H-HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHH
T ss_pred             HHHHHhhcch--h-hhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChH----hHHHHHHHHHHhhccCCchhHH
Confidence            8777543211  1 11234678888999988 999999999999988641 111    1112355677788888899999


Q ss_pred             HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940          337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA  416 (449)
Q Consensus       337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ..|+.+++.++....++.    ....+++.+..++.+++...|..++.++..+........               + ..
T Consensus       459 ~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---------------~-~~  518 (588)
T d1b3ua_         459 EAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------------T-TK  518 (588)
T ss_dssp             HHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------------H-HH
T ss_pred             HHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH---------------H-HH
Confidence            999999999987544432    223478889999999999999999999998887654321               1 22


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940          417 EGFKKIEDLKSHGNNGIREKAVTILETYWL  446 (449)
Q Consensus       417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~  446 (449)
                      ..++.+.++..++.+.++..+.+.+...+.
T Consensus       519 ~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            357778888888889999888888877543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.4e-14  Score=142.30  Aligned_cols=346  Identities=15%  Similarity=0.192  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH
Q 039940           36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK  115 (449)
Q Consensus        36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  115 (449)
                      ..++..|..+|..++...+..-...     +++.+.+.+.+++ ...++.|+.+++.++.+..+.....+. .+++.++.
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~  443 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQ  443 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHH
Confidence            3456666666666654332222222     2566667778888 799999999999999865443322222 46788999


Q ss_pred             hhCCCChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 039940          116 LLASPSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL  194 (449)
Q Consensus       116 ~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  194 (449)
                      .++++++.+|..++|+|+.++.... ...+. .-...++.++..+ .+.++.++..+++++.+++.............++
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il  521 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYIL  521 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            9999999999999999999874221 11111 1245677788887 6778999999999999998654333222333344


Q ss_pred             HHHHHhhcCCCHHHHHHHH---------------------------------------------HHHHHcccC-------
Q 039940          195 PALAQLIHLDDEEVLRNVC---------------------------------------------WTLSNLSDG-------  222 (449)
Q Consensus       195 ~~l~~ll~~~~~~~~~~~~---------------------------------------------~~l~~l~~~-------  222 (449)
                      +.+...+...+...+..+.                                             .++..++..       
T Consensus       522 ~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         522 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            4443333322221111111                                             111111000       


Q ss_pred             ---------------------------------ChhH-------------------HHHHHHhCcHHHHHHhhCCCCCcc
Q 039940          223 ---------------------------------TNDK-------------------IQAVIEAGVCGPLVELLGHPSPSV  250 (449)
Q Consensus       223 ---------------------------------~~~~-------------------~~~~~~~~~~~~L~~ll~~~~~~v  250 (449)
                                                       ..+.                   ...+....+++.+...+++.++++
T Consensus       602 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~v  681 (888)
T d1qbkb_         602 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV  681 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHH
Confidence                                             0000                   000111234555556666777788


Q ss_pred             hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc
Q 039940          251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD  330 (449)
Q Consensus       251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  330 (449)
                      +..|..+++.++...........+ .+++.+...+.++ ...++..|+|+++.++....+.....+. .+++.|+..+++
T Consensus       682 r~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~  758 (888)
T d1qbkb_         682 RQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINR  758 (888)
T ss_dssp             HHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcC
Confidence            888888888887654443322222 3667777778877 8899999999999998633332222222 477888888877


Q ss_pred             C--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940          331 A--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       331 ~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .  +..++++++.+++.++.. .++......+ .+++.++..+.. +|.+-+..+...+..+++..+.
T Consensus       759 ~~~~~~v~~n~~~~lgrl~~~-~p~~~~~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~  824 (888)
T d1qbkb_         759 PNTPKTLLENTAITIGRLGYV-CPQEVAPMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS  824 (888)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHH-CHHHHGGGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGG
T ss_pred             CCccHHHHHHHHHHHHHHHHH-CHHHHHhhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcH
Confidence            5  456999999999999886 4554432222 256666666654 5666788899999999987664

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.7e-12  Score=135.49  Aligned_cols=408  Identities=10%  Similarity=0.097  Sum_probs=264.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      .+..+++.+.+.|++.|+.|+..|.+........ .+.-....+++.++++|.+++ +++|..|+.+|+.++...++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~-~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccc-cChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            3667888999999999999999998887543211 111112346899999999999 89999999999999875443221


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh-----hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR-----NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN  177 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~  177 (449)
                          ..+++.|+..+.+++...+..+..+|..+...-+...     ........++.+...+.+..+..++..++.++..
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence                1357888888888888889888888887754322110     0011122334455555556678899999999998


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHH
Q 039940          178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL-GHPSPSVLIPALR  256 (449)
Q Consensus       178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~  256 (449)
                      +....+.........+++.+...+.++++.++..++.+++.++...+..   .. ..+++.++..+ .+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            8876654444455778899999999999999999999999998665432   11 14456566544 3556778888999


Q ss_pred             HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH----HHHHHHH--CC-----------
Q 039940          257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK----QIQAVID--AG-----------  319 (449)
Q Consensus       257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~----~~~~l~~--~~-----------  319 (449)
                      +++.++...+...... -..+++.+...+.+. +.++|..+..++..++...+.    ....++.  ..           
T Consensus       234 ~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            9999886544322111 246788999999988 899999999999888763321    1111110  00           


Q ss_pred             -------------------ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 039940          320 -------------------LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT  380 (449)
Q Consensus       320 -------------------~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~  380 (449)
                                         ..+.......+.+..+|..++.+|..++... ++....+. ..+++.+...+.+.++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~-~~~l~~~~-~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFY-KTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHH-TTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHH-HHHHHHHH-HHHHHHHHHHhcCCchHHHH
Confidence                               0001111122235678999999999998763 33333322 45889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCC---CCcccHHHHHHHh--cchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940          381 VCLKGLENILKVGEAKKNRGST---IGDVNQYARLVEG--AEGFKKIEDLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       381 ~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      .++.++..+.............   ....+.....+.+  ...++.+.....+.++.++..+..++..+
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l  458 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTEL  458 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            9999998888654322110000   0000001111111  13456667777788888888887777654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=6.2e-11  Score=101.92  Aligned_cols=256  Identities=14%  Similarity=0.118  Sum_probs=194.7

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940           64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR  143 (449)
Q Consensus        64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  143 (449)
                      ....+.|+++|++++ +.++..|+.+|+.+..  +         ..++.++.+++++++.+|..|+.+|+.+....... 
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence            455778999999999 9999999999998864  2         24799999999999999999999999985433221 


Q ss_pred             hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940          144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT  223 (449)
Q Consensus       144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  223 (449)
                           ...++.+...+.+++++.++..++.++..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 -----~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 -----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             -----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             -----cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence                 11244566666688899999999999999887642    2234577888888888899999999888876542  


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940          224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN  303 (449)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n  303 (449)
                               ...++.+..++...++.++..+..++.........         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     24567788888888888888888888877665432         344566777777 88999999999887


Q ss_pred             HhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHH
Q 039940          304 ITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVC  382 (449)
Q Consensus       304 l~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~  382 (449)
                      +..           ...++.|++.+.+  +.++..++++|+.+..   +         +.++.|..++.+ +|.+++..|
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---~---------~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---H---------HHHHHHHHHHccCCCHHHHHHH
Confidence            632           2367788888874  4689999999998853   2         367777777765 578899999


Q ss_pred             HHHHH
Q 039940          383 LKGLE  387 (449)
Q Consensus       383 ~~~l~  387 (449)
                      ++.|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.3e-10  Score=98.23  Aligned_cols=256  Identities=14%  Similarity=0.103  Sum_probs=188.7

Q ss_pred             hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940           20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV   99 (449)
Q Consensus        20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~   99 (449)
                      +-...+.|+++|.++++.++..|+..|..+..            ...++.++.++++++ +.++..|+.+|+.+......
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~   83 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC   83 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc
Confidence            34456789999999999999999999987731            124799999999999 89999999999998763221


Q ss_pred             hhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940          100 NTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       100 ~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l  178 (449)
                       ....     ++.+.. +++++++.++..++.+|++++...+....     ..++.+...+ .+.++.++..++.++...
T Consensus        84 -~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          84 -EDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             -HHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC
T ss_pred             -ccch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhc
Confidence             1111     233333 46788999999999999999765543222     2344555555 677888998888887764


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV  258 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l  258 (449)
                      ..          ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..++
T Consensus       152 ~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al  212 (276)
T d1oyza_         152 ND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL  212 (276)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ch----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhcccc
Confidence            33          25577888888888999998888888877655542         345567778888888999998888


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHH
Q 039940          259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKK  337 (449)
Q Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~  337 (449)
                      +.+..           ...++.|+..+.++   .+|..++++|+.+.  +         .+.++.|..++... +.+++.
T Consensus       213 ~~~~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~  267 (276)
T d1oyza_         213 SYRKD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIIT  267 (276)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHH
T ss_pred             chhhh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHH
Confidence            76532           24677888888754   58899999999883  2         24778888888765 788999


Q ss_pred             HHHHHHH
Q 039940          338 EAAWAIS  344 (449)
Q Consensus       338 ~a~~aL~  344 (449)
                      .|+.+|.
T Consensus       268 ~A~~~L~  274 (276)
T d1oyza_         268 SAIDKLK  274 (276)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9888764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.9e-11  Score=120.31  Aligned_cols=357  Identities=14%  Similarity=0.134  Sum_probs=215.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940           23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK  102 (449)
Q Consensus        23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  102 (449)
                      .++.+.+.+.++++..|..|+.+|..++.+. .+.....+ ..+++.++..+.+++ +.++..|+++|+.++........
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh
Confidence            3455566777899999999999998886542 11111111 235778888899988 89999999999998752211111


Q ss_pred             HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-chhhhH--------------------hhcCCHHH-------
Q 039940          103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GCRNLV--------------------LHEEALIP-------  154 (449)
Q Consensus       103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~--------------------~~~~~i~~-------  154 (449)
                      .-.-...++.++..+.++++.++..|+++|.+++.... .....+                    .-..++..       
T Consensus       473 ~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         473 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence            12234678889999999999999999999998873211 000000                    00000001       


Q ss_pred             ----------H----HHHHcc--ccc------------------------------------------------------
Q 039940          155 ----------L----LAQLNE--HAR------------------------------------------------------  164 (449)
Q Consensus       155 ----------l----~~~l~~--~~~------------------------------------------------------  164 (449)
                                +    ......  +.+                                                      
T Consensus       553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  632 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE  632 (888)
T ss_dssp             GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence                      1    110000  000                                                      


Q ss_pred             ---HHHHHHHHHHHHHhhcCCCCCCh--hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHH
Q 039940          165 ---LSMLRIGTWTLSNLCKGKPQPPF--DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPL  239 (449)
Q Consensus       165 ---~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L  239 (449)
                         .++...++.++..+.........  ......++.+...+.+.+++++..+..+++.++...........+ .+++.+
T Consensus       633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l  711 (888)
T d1qbkb_         633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPIL  711 (888)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHH
Confidence               00011111111111111000000  001234566677777888999999999998887655443332233 467788


Q ss_pred             HHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHC
Q 039940          240 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRKQIQAVIDA  318 (449)
Q Consensus       240 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  318 (449)
                      ...+.++..+++..|+++++.++..........+ ..+++.|+.+++++. ...++..++.+++.++...++.....+. 
T Consensus       712 ~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~-  789 (888)
T d1qbkb_         712 GTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-  789 (888)
T ss_dssp             HHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG-
T ss_pred             HHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH-
Confidence            8888888888999999999999865443322222 247888999998752 3458899999999998877765543333 


Q ss_pred             CChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHHH
Q 039940          319 GLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL---CADPEIVTVCLKGLENILK  391 (449)
Q Consensus       319 ~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~---~~~~~~~~~~~~~l~~l~~  391 (449)
                      .+++.++..+... +.+-+..|...++.+...+.+....      .+..++....   ...++++.....+|..+-.
T Consensus       790 ~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~------~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~  860 (888)
T d1qbkb_         790 QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ------DFIFFCDAVASWINPKDDLRDMFCKILHGFKN  860 (888)
T ss_dssp             GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGG------GHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHH------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            4778888888663 6677889999999998863322111      1222233222   2356677776666665543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.8e-11  Score=109.88  Aligned_cols=363  Identities=11%  Similarity=0.055  Sum_probs=225.9

Q ss_pred             hcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHH----------HHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 039940           22 EILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDE----------VIQAGIVPRFVEFLLREDYPRLQFEAAWV   89 (449)
Q Consensus        22 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~----------~~~~~~i~~L~~ll~~~~~~~~~~~a~~~   89 (449)
                      +.+..+.+.+.++  +..+|..|+..|.+............          -....+.+.+++.+.+++ +. +..++.+
T Consensus        34 ~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~  111 (458)
T d1ibrb_          34 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQC  111 (458)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHH
Confidence            4466677777543  47788889888888876531111111          112234555667776665 22 2334445


Q ss_pred             HHHhcCCChhhhHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc-cccHH
Q 039940           90 LTNIASGTSVNTKVLIDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE-HARLS  166 (449)
Q Consensus        90 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~  166 (449)
                      +..++..... .  -.-.+.++.+...+.+  .+...+..++.++..++...............++.++..+.. +.+.+
T Consensus       112 ~~~i~~~~~~-~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAEIP-V--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHHGG-G--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHhCC-c--ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            5544431000 0  0112567888888765  457788889999988875432221111122345666666643 34678


Q ss_pred             HHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC
Q 039940          167 MLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG  244 (449)
Q Consensus       167 ~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~  244 (449)
                      ++..++.++.++....+  ...........+.+...+.+++++++..++.++..++...+......+.....+.+.....
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999887652  1222333556777888888899999999999999988655433222222233455566667


Q ss_pred             CCCCcchhhHHHHHHHhhcCChhhHH--------------------HHHhcCCHHHHHHHhccC------CchhHHHHHH
Q 039940          245 HPSPSVLIPALRTVGNIVTGDDFQTQ--------------------CVINHGAVPYLLALLINN------HKKSIKKESC  298 (449)
Q Consensus       245 ~~~~~v~~~a~~~l~~l~~~~~~~~~--------------------~~~~~~~l~~L~~ll~~~------~~~~v~~~a~  298 (449)
                      +.+++++..++..+..++........                    ......+.+.+...+...      .+..++..|.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            77888888899888877642111100                    001112344445544321      1345888888


Q ss_pred             HHHHHHhcCC-HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH
Q 039940          299 WTVSNITAGN-RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE  377 (449)
Q Consensus       299 ~~l~nl~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  377 (449)
                      .++..++... .+...     .+++.+...++++++.+|..|+.+|+.++....++..+.+. ..+++.|...++++++.
T Consensus       349 ~~l~~l~~~~~~~~~~-----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         349 VCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHhccHhhhh-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHH
Confidence            8888887522 22221     25667778888889999999999999998754333222211 24688899999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 039940          378 IVTVCLKGLENILKVGEA  395 (449)
Q Consensus       378 ~~~~~~~~l~~l~~~~~~  395 (449)
                      +|..|+++|.++.+...+
T Consensus       423 VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999987654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.6e-10  Score=103.07  Aligned_cols=388  Identities=12%  Similarity=0.071  Sum_probs=246.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhHH
Q 039940           25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTKV  103 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~  103 (449)
                      -.+++.+.|+|.+.+..|-..|..+...+    .     .+.+..|...+.+++ ...++..|+..|.+...........
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~----~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVEN----L-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH----H-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcC----c-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            35667778999999999999999886431    1     133667777776543 3678888988888877643222111


Q ss_pred             H-----------HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc-cccHHHHHHH
Q 039940          104 L-----------IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE-HARLSMLRIG  171 (449)
Q Consensus       104 ~-----------~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a  171 (449)
                      .           ....+.+.+++.+.+++...+ .++.+++.++......   -.-.+.++.++..+.. ..+...+..+
T Consensus        74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          74 QYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence            1           112345567777776654433 3445555554221000   0012456677777743 3456778888


Q ss_pred             HHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHH-HHHHhCcHHHHHHhhCCCC
Q 039940          172 TWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQ-AVIEAGVCGPLVELLGHPS  247 (449)
Q Consensus       172 ~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~  247 (449)
                      +.++..++... +.........+++.+...+.++  +.+++..++.++..+......... ......+.+.+...+.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            89998888654 3333344567788888888754  578999999999998866543221 1222245677888888899


Q ss_pred             CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH------------
Q 039940          248 PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV------------  315 (449)
Q Consensus       248 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l------------  315 (449)
                      ++++..++.++..++..........+.....+.+...+.+. +..++..|+..+..++..........            
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence            99999999999999865544332222333344555666677 88899999998888864221111110            


Q ss_pred             --------HHCCChHHHHHHhhc-------CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 039940          316 --------IDAGLIVPLVNLLQD-------AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT  380 (449)
Q Consensus       316 --------~~~~~~~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~  380 (449)
                              ....+.+.+...+..       .+..++..+..++..++.....+....     +++.+...++++++.++.
T Consensus       309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence                    001123444444432       234588889999988887644343333     466788888999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940          381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       381 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      .++.+|..+.........        .++.     ...++.|..+..++++.|+..|...+.++
T Consensus       384 aal~~l~~i~~~~~~~~~--------~~~l-----~~i~~~l~~~l~d~~~~VR~~a~~~l~~i  434 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQL--------KPLV-----IQAMPTLIELMKDPSVVVRDTAAWTVGRI  434 (458)
T ss_dssp             HHHHHHHHTSSSSCTTTT--------CTTT-----TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHhHH--------HHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999888754322110        0111     22456677788899999999999988765

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.3e-10  Score=116.40  Aligned_cols=398  Identities=12%  Similarity=0.123  Sum_probs=241.5

Q ss_pred             hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-------------------
Q 039940           18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-------------------   78 (449)
Q Consensus        18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------------------   78 (449)
                      ....+.++.+++.|.+.++++|..|+.+|..+...-......     .+++.|+..+.+++                   
T Consensus        41 ~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~-----~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~  115 (1207)
T d1u6gc_          41 DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP  115 (1207)
T ss_dssp             THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHH-----HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcc
Confidence            344578999999999999999999999998886543111111     12333333333322                   


Q ss_pred             ----------------------------CHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHH
Q 039940           79 ----------------------------YPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVW  130 (449)
Q Consensus        79 ----------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~  130 (449)
                                                  ...++..|+.++..+....+...... ...+++.++..+.+++..+|..|+.
T Consensus       116 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~  194 (1207)
T d1u6gc_         116 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTII  194 (1207)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                        23445555555554433111100000 0124566777778899999999999


Q ss_pred             HHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHH
Q 039940          131 ALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLR  210 (449)
Q Consensus       131 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~  210 (449)
                      +|+.++...+..   . -...++.++..+..+.+...++.++.++..++...+..-......+++.+...+..++++++.
T Consensus       195 ~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~  270 (1207)
T d1u6gc_         195 ALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELRE  270 (1207)
T ss_dssp             HHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHH
T ss_pred             HHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence            999998654321   1 123466777777666666677778888888887654433344578899999999999999999


Q ss_pred             HHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-------------------------------------hCCCCCcchhh
Q 039940          211 NVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-------------------------------------LGHPSPSVLIP  253 (449)
Q Consensus       211 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-------------------------------------l~~~~~~v~~~  253 (449)
                      .++.++..+....+........ .+++.+...                                     ..+..+.+|..
T Consensus       271 ~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~  349 (1207)
T d1u6gc_         271 YCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA  349 (1207)
T ss_dssp             HHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred             HHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHH
Confidence            9998888876543321111100 111111111                                     12234678899


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC---CHH-------------HHHHHH-
Q 039940          254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG---NRK-------------QIQAVI-  316 (449)
Q Consensus       254 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~-------------~~~~l~-  316 (449)
                      ++.++..+....++...... ..+++.++..+.+. ++.+|..+..++..+...   ...             ....+. 
T Consensus       350 a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  427 (1207)
T d1u6gc_         350 AAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS  427 (1207)
T ss_dssp             HHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHH
Confidence            99999999876665544433 45889999999888 889999999988877631   000             000111 


Q ss_pred             -HCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhh
Q 039940          317 -DAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       317 -~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~  393 (449)
                       -..+++.+.+.+.+.++.++..+..++..++.........++..  .++.+...+.+.  ...++..++.++..++...
T Consensus       428 ~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~--~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~  505 (1207)
T d1u6gc_         428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV--LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH  505 (1207)
T ss_dssp             HTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH--HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHh--hHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc
Confidence             12356667777788899999999999998876532221122111  355566666543  4467778888888887654


Q ss_pred             hhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940          394 EAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET  443 (449)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~  443 (449)
                      ....           +...+  ......+.....++.+.+...+...+..
T Consensus       506 ~~~~-----------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~  542 (1207)
T d1u6gc_         506 SPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQ  542 (1207)
T ss_dssp             CGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             cHHH-----------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHH
Confidence            3321           12222  1223444555556666666655554443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=6.6e-08  Score=96.28  Aligned_cols=354  Identities=12%  Similarity=0.077  Sum_probs=223.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhHHH-
Q 039940           27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTKVL-  104 (449)
Q Consensus        27 l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~-  104 (449)
                      |.+.+.|+|+.+|..|-..|.++...+  .       .+.+..|.+.+.+.+ ...+|..|+..|.|............ 
T Consensus        10 L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1          10 LENSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            334567899999999999998885431  1       234677888887643 36788889999988776332211110 


Q ss_pred             -----------HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHH
Q 039940          105 -----------IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT  172 (449)
Q Consensus       105 -----------~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  172 (449)
                                 ....+-..+++.+.++++.+|..+..+++.++... |...  .  ...++.++..+..+.+..++..++
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~~al  156 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKRASL  156 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHHHHH
Confidence                       01123456777888899999999999999987432 1100  0  123556666664455567888899


Q ss_pred             HHHHHhhcCCCCCCh---hhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHcccCChhHHH-HHHHhCcHHHHHHhhCCC
Q 039940          173 WTLSNLCKGKPQPPF---DQVRPVLPALAQLIHL--DDEEVLRNVCWTLSNLSDGTNDKIQ-AVIEAGVCGPLVELLGHP  246 (449)
Q Consensus       173 ~~l~~l~~~~~~~~~---~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~  246 (449)
                      .++..++........   ......++.+...+.+  .+..++..++.++.++...-..... ......+++.+...+.++
T Consensus       157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (861)
T d2bpta1         157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE  236 (861)
T ss_dssp             HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC
Confidence            999999876533222   2224455555555543  3588999999999988765443221 112224667888889999


Q ss_pred             CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH--------------
Q 039940          247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI--------------  312 (449)
Q Consensus       247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~--------------  312 (449)
                      +++++..++.++..++..........+..-+...+....++. ++.++..+...+..++.......              
T Consensus       237 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  315 (861)
T d2bpta1         237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY  315 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999999998765444333222222223334444555 77777777766665542100000              


Q ss_pred             -------HH------------------------------------HHHCCChHHHH----HHhhcCchhHHHHHHHHHHH
Q 039940          313 -------QA------------------------------------VIDAGLIVPLV----NLLQDAEFDIKKEAAWAISN  345 (449)
Q Consensus       313 -------~~------------------------------------l~~~~~~~~L~----~ll~~~~~~v~~~a~~aL~~  345 (449)
                             ..                                    .....+++.+.    ..+.+.+...+..+..++..
T Consensus       316 ~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  395 (861)
T d2bpta1         316 NFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGS  395 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHH
Confidence                   00                                    00011222222    22334467788888888888


Q ss_pred             hhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940          346 ATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       346 l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +.............+ .+++.+...+.++++.++..+++++..+......
T Consensus       396 i~~~~~~~~~~~~l~-~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  444 (861)
T d2bpta1         396 IMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAE  444 (861)
T ss_dssp             TSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHhhcchhhHHHHHH-HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch
Confidence            887766555444333 3788899999999999999999999999987654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=1.5e-09  Score=108.54  Aligned_cols=355  Identities=12%  Similarity=0.156  Sum_probs=211.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH
Q 039940           26 AMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI  105 (449)
Q Consensus        26 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  105 (449)
                      .+...+.++++..+..|+.++..+.... ......-.-..+++.++..+.+++ +.++..++++++.++...+.   .+.
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~~  447 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SID  447 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GSC
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hhh
Confidence            3344556788999999999988887543 222222223456888999999998 89999999999998762211   112


Q ss_pred             hCCChHHHHHhh---CCCChHHHHHHHHHHHHHhcC----CCc-hhhhHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHH
Q 039940          106 DHGAVPIFVKLL---ASPSDDVREQAVWALGNIVAH----SPG-CRNLVLHEEALIPLLAQLN-EHARLSMLRIGTWTLS  176 (449)
Q Consensus       106 ~~~~i~~L~~~l---~~~~~~~~~~a~~~L~~l~~~----~~~-~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~  176 (449)
                      ....++.++..+   ...++.++..+++++..++..    .+. .....  ...+..++.... ...+..++..+..++.
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~  525 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            223344444433   135677888888888877632    111 11111  123344444442 2345678888888888


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhh----cCCC-----------HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH
Q 039940          177 NLCKGKPQPPFDQVRPVLPALAQLI----HLDD-----------EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE  241 (449)
Q Consensus       177 ~l~~~~~~~~~~~~~~~l~~l~~ll----~~~~-----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  241 (449)
                      .+....+...........+.+...+    ....           ..++..++.++..+....+.......+ .+++.+..
T Consensus       526 ~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T d2bpta1         526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhh
Confidence            8877654433333334444433333    2111           123444444555444322221111111 34566666


Q ss_pred             hhCC-CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 039940          242 LLGH-PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL  320 (449)
Q Consensus       242 ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  320 (449)
                      .+.. ++..++..++.+++.++..........++ .+++.+...+.+. ++.++..|+.+++.++............ .+
T Consensus       605 ~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i  681 (861)
T d2bpta1         605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HH
Confidence            6655 45668888999999887654443333332 4788899999988 8899999999999998643333323322 36


Q ss_pred             hHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC----C-------HHHHHHHHHHHH
Q 039940          321 IVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA----D-------PEIVTVCLKGLE  387 (449)
Q Consensus       321 ~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~----~-------~~~~~~~~~~l~  387 (449)
                      ++.|++.+.+.  +..++..++.+++.++.........++-+  +++.+...+...    +       .++++.++.++.
T Consensus       682 ~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  759 (861)
T d2bpta1         682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            77888888765  57899999999999987543343343322  345555444332    2       135677777777


Q ss_pred             HHHHhh
Q 039940          388 NILKVG  393 (449)
Q Consensus       388 ~l~~~~  393 (449)
                      .++...
T Consensus       760 ~i~~~~  765 (861)
T d2bpta1         760 GIVAGL  765 (861)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            776543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.4e-08  Score=95.44  Aligned_cols=363  Identities=12%  Similarity=0.083  Sum_probs=229.8

Q ss_pred             hhcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCCcHH-----------HHHHcCCHHHHHHhhcCCCCHHHHHHHH
Q 039940           21 LEILPAMVAGVWS--DDNSMQLEAATQFRRLLSIERSLPID-----------EVIQAGIVPRFVEFLLREDYPRLQFEAA   87 (449)
Q Consensus        21 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~-----------~~~~~~~i~~L~~ll~~~~~~~~~~~a~   87 (449)
                      .+-+..+.+.+.+  .+..+|..|+..|.+..... .....           .-....+...++..+.+++  .++..++
T Consensus        34 ~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~-~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a  110 (876)
T d1qgra_          34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSAS  110 (876)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHH
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-ccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence            3456666666654  35789999999999887542 11100           0112334556777887765  3445677


Q ss_pred             HHHHHhcCCC-hhhhHHHHhCCChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc-cc
Q 039940           88 WVLTNIASGT-SVNTKVLIDHGAVPIFVKLLASP--SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE-HA  163 (449)
Q Consensus        88 ~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~  163 (449)
                      .+++.++... +...    =.++++.+.+.+.++  +..++..++.+|..++..-....-.-.....++.++..+.. +.
T Consensus       111 ~~i~~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~  186 (876)
T d1qgra_         111 QCVAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP  186 (876)
T ss_dssp             HHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred             HHHHHHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCc
Confidence            7888877521 1000    025789999888654  47788999999999875322111111112346666776643 34


Q ss_pred             cHHHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH
Q 039940          164 RLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE  241 (449)
Q Consensus       164 ~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  241 (449)
                      +.+++..++.++.+......  .........+++.+...+.+++++++..++.++..++...++.....+...+.+.+..
T Consensus       187 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~  266 (876)
T d1qgra_         187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE  266 (876)
T ss_dssp             CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            57888899988888776541  1122223456777788888899999999999999998766554444444456667777


Q ss_pred             hhCCCCCcchhhHHHHHHHhhcCChhhHHH--------------------HHhcCCHHHHHHHhccC------CchhHHH
Q 039940          242 LLGHPSPSVLIPALRTVGNIVTGDDFQTQC--------------------VINHGAVPYLLALLINN------HKKSIKK  295 (449)
Q Consensus       242 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~--------------------~~~~~~l~~L~~ll~~~------~~~~v~~  295 (449)
                      ...+..++++..++..+..++.........                    .....+++.+...+...      .+..++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  346 (876)
T d1qgra_         267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK  346 (876)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHH
Confidence            788888888888888777776432111100                    01112334444444322      1334777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC
Q 039940          296 ESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD  375 (449)
Q Consensus       296 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~  375 (449)
                      .|..++..++.....   .++. .+++.+...+.+.+...+..++.+++.+.............. ..++.+...+.+++
T Consensus       347 ~a~~~l~~l~~~~~~---~~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~  421 (876)
T d1qgra_         347 AAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPS  421 (876)
T ss_dssp             HHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHhhh---hhhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCc
Confidence            787887777642111   1111 134556666677788999999999999988655555444332 36888889999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 039940          376 PEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       376 ~~~~~~~~~~l~~l~~~~~~  395 (449)
                      +.++..+++++..+++....
T Consensus       422 ~~vr~~a~~~l~~~~~~~~~  441 (876)
T d1qgra_         422 VVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHCGG
T ss_pred             cHHHHHHHHHHHHHHHHcch
Confidence            99999999999999987654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-08  Score=101.83  Aligned_cols=363  Identities=12%  Similarity=0.072  Sum_probs=219.5

Q ss_pred             HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC-CcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCC
Q 039940           19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERS-LPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASG   96 (449)
Q Consensus        19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~   96 (449)
                      .+...-..+++.+.+++. .+..++.++..++..... ..+     .++++.+++.+.+++ ...++..++.+|..++..
T Consensus        87 ~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~W-----peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~  160 (876)
T d1qgra_          87 ARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNSTEHMKESTLEAIGYICQD  160 (876)
T ss_dssp             HHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcccc-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            344455677778777654 344566667666543210 112     356888988887654 256788899999998752


Q ss_pred             ChhhhHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCCchhhhHhh-cCCHHHHHHHHcccccHHHHHHHHH
Q 039940           97 TSVNTKVLIDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSPGCRNLVLH-EEALIPLLAQLNEHARLSMLRIGTW  173 (449)
Q Consensus        97 ~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~  173 (449)
                      .......-....+++.++..+.+  ++..++..++.++.+.....+........ .-.++.+...+ .+++++++..++.
T Consensus       161 ~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~  239 (876)
T d1qgra_         161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQ  239 (876)
T ss_dssp             SCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHH
Confidence            21111111112467888888865  45789999999998876443221111111 11233344444 6788999999999


Q ss_pred             HHHHhhcCCCCCChhhh-hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHH--------------------HHHH
Q 039940          174 TLSNLCKGKPQPPFDQV-RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ--------------------AVIE  232 (449)
Q Consensus       174 ~l~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------~~~~  232 (449)
                      ++..++...+....... ..+.+.+.....+.+.+++..++..+..++........                    ....
T Consensus       240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (876)
T d1qgra_         240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL  319 (876)
T ss_dssp             HHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHH
Confidence            99999887644333322 34555666677778888888888777666542211100                    0111


Q ss_pred             hCcHHHHHHhhCC-------CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940          233 AGVCGPLVELLGH-------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT  305 (449)
Q Consensus       233 ~~~~~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~  305 (449)
                      ..+++.+...+..       .+..++..+..++..++.......   + ..+++.+...+.+. +...+..++.+++.+.
T Consensus       320 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~  394 (876)
T d1qgra_         320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCIL  394 (876)
T ss_dssp             HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhccc-hHHHHHHHHHHHHhhh
Confidence            1344455555443       233467777777777664322211   1 12345566667777 8889999999999987


Q ss_pred             cC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 039940          306 AG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK  384 (449)
Q Consensus       306 ~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~  384 (449)
                      .+ .......... .+++.+...+.++++.++..++++++.++..........-.-...++.+...+. .++.++..+++
T Consensus       395 ~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~  472 (876)
T d1qgra_         395 EGPEPSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCW  472 (876)
T ss_dssp             SSSCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHH
Confidence            64 3444333332 578899999999999999999999999886421110000000113444454443 46788999999


Q ss_pred             HHHHHHHhhhh
Q 039940          385 GLENILKVGEA  395 (449)
Q Consensus       385 ~l~~l~~~~~~  395 (449)
                      ++.++......
T Consensus       473 ~l~~l~~~~~~  483 (876)
T d1qgra_         473 AFSSLAEAAYE  483 (876)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998876543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=6.9e-07  Score=79.06  Aligned_cols=320  Identities=11%  Similarity=0.139  Sum_probs=200.2

Q ss_pred             CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhH---hhcC-CH-HHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940          108 GAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLV---LHEE-AL-IPLLAQLNEHARLSMLRIGTWTLSNLCKG  181 (449)
Q Consensus       108 ~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~-~i-~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  181 (449)
                      .++..++.++.. ..+++.+..+..+..+...++.....+   .+.. .. .++...+ ...+.-+...++..+..++..
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~  152 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQN  152 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhc
Confidence            467888888875 668888888888888877665432222   1111 12 2223333 445566667777777777766


Q ss_pred             CCCCCh--hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH--HhCcHHHHHHhhCC----C-------
Q 039940          182 KPQPPF--DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI--EAGVCGPLVELLGH----P-------  246 (449)
Q Consensus       182 ~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~L~~ll~~----~-------  246 (449)
                      ......  .........+..+....+.+...-++.++..+...++.+ ..+.  +...++.++..+..    .       
T Consensus       153 ~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R-~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         153 GLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             TTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             cccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHH-HHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence            432211  111222233444445677888888888898888765543 2232  22334444444422    1       


Q ss_pred             ------CCcchhhHHHHHHHhhcCChhhHHHHHhc--CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC----HH-HHH
Q 039940          247 ------SPSVLIPALRTVGNIVTGDDFQTQCVINH--GAVPYLLALLINNHKKSIKKESCWTVSNITAGN----RK-QIQ  313 (449)
Q Consensus       247 ------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~----~~-~~~  313 (449)
                            ...+...++.|++-++.. +.....+.+.  +.++.++.+++.....++.+-++.++.|++...    +. ...
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~  310 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  310 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence                  235678899999999874 5555556554  458888999876657888899999999998631    11 233


Q ss_pred             HHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccC---------------------CHHHH-HHHHHc--------
Q 039940          314 AVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAG---------------------TQEQI-KYLVRE--------  361 (449)
Q Consensus       314 ~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~---------------------~~~~~-~~l~~~--------  361 (449)
                      .++..++++.+-.+...+  |+++....- .|.......                     +|-+. +.|+.+        
T Consensus       311 ~~v~~~~l~~l~~L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         311 LLLLGNALPTVQSLSERKYSDEELRQDIS-NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHHCHHHHHHHHHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHcchhHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            455666666554444333  666544332 222222110                     11111 223322        


Q ss_pred             --CChHHHHhhcc----------CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC
Q 039940          362 --GCIKPLCDLLL----------CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG  429 (449)
Q Consensus       362 --~~~~~L~~ll~----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  429 (449)
                        .+++.|+.+++          +.|+.+...|+.=+..+++..+..             ...+.+.|+.+.+.+|+.|+
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-------------r~il~~lg~K~~vM~Lm~h~  456 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNHS  456 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSCS
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcCC
Confidence              24788888885          347778888888899999888764             56778899999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 039940          430 NNGIREKAVTILETY  444 (449)
Q Consensus       430 ~~~i~~~a~~~i~~~  444 (449)
                      |++|+..|...+++.
T Consensus       457 d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         457 DSRVKYEALKATQAI  471 (477)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988875

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=4.8e-07  Score=80.09  Aligned_cols=307  Identities=14%  Similarity=0.082  Sum_probs=188.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940           25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVI-QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKV  103 (449)
Q Consensus        25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  103 (449)
                      +.+...+.+++.-....+...+..+++.. .......- .......+-.+...++ .+.+..|+.++..+.. .++.|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            45556667777777778888888887654 33332111 1112333333445566 7889999999999998 6888887


Q ss_pred             HHhC--CChHHHHHhhCC-----------------CChHHHHHHHHHHHHHhcCCCchhhhHhhc--CCHHHHHHHHccc
Q 039940          104 LIDH--GAVPIFVKLLAS-----------------PSDDVREQAVWALGNIVAHSPGCRNLVLHE--EALIPLLAQLNEH  162 (449)
Q Consensus       104 ~~~~--~~i~~L~~~l~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~  162 (449)
                      +...  ..++.++..+..                 .+..++..++.+++-++... .....+.+.  +.++.++..+..+
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHhhhHHHHHHHHHHHhh
Confidence            7543  345555555521                 12577889999999998754 344444343  3477888888778


Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCC------hhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHcccCChhHHHHHHHhC
Q 039940          163 ARLSMLRIGTWTLSNLCKGKPQPP------FDQVRPVLPALAQLIHL--DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAG  234 (449)
Q Consensus       163 ~~~~~~~~a~~~l~~l~~~~~~~~------~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  234 (449)
                      ..+.+.+-++.++.|++.......      .....++++.+..+...  .|+++....-. |......   ..+   +..
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~-L~~~L~~---~~k---~lT  353 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISN-LKEILEN---EYQ---ELT  353 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHH-HHHHHHH---HHH---TCC
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHH-HHHHHHH---HHH---hcC
Confidence            889999999999999997642211      11223445544443332  36666544322 2111110   000   000


Q ss_pred             cH-HHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc----------cCCchhHHHHHHHHH
Q 039940          235 VC-GPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI----------NNHKKSIKKESCWTV  301 (449)
Q Consensus       235 ~~-~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~----------~~~~~~v~~~a~~~l  301 (449)
                      -+ +....+...  .-..+...--+---|.....+..      ..++..|+++|+          +. |+.+..-||.=+
T Consensus       354 sfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~------~~llk~L~~lL~~~~~~~~~~~s~-D~~~lAVAc~Di  426 (477)
T d1ho8a_         354 SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN------YKIFRQLIELLQAKVRNGDVNAKQ-EKIIIQVALNDI  426 (477)
T ss_dssp             HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG------GHHHHHHHHHHHHHHHTTCCCSHH-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccc------hHHHHHHHHHHhhcccccccccCC-CcceeehhhhhH
Confidence            00 111111111  11122222222233433332222      235778899986          33 778888999999


Q ss_pred             HHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940          302 SNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA  349 (449)
Q Consensus       302 ~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~  349 (449)
                      +.++++-|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..+
T Consensus       427 Gefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         427 THVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            999998778777777789999999999999999999999999988754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.54  E-value=1.1e-08  Score=73.87  Aligned_cols=109  Identities=18%  Similarity=0.217  Sum_probs=88.7

Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChH
Q 039940          243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIV  322 (449)
Q Consensus       243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~  322 (449)
                      |+++++.+|..|+++|+.+.            ...++.|+..+.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            46788899999999887652            13567888999998 99999999999997732  22         467


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940          323 PLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE  387 (449)
Q Consensus       323 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~  387 (449)
                      .|..++.++++.||..|+++|+.+.   ++.         .++.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8889999999999999999999884   332         4667778899999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.39  E-value=4.1e-08  Score=70.82  Aligned_cols=108  Identities=19%  Similarity=0.219  Sum_probs=86.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHH
Q 039940           75 LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIP  154 (449)
Q Consensus        75 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  154 (449)
                      .+++ +.++..|+++|+.+..            ..++.|+..+.++++.+|..++++|+++..           .+.++.
T Consensus         2 ~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~   57 (111)
T d1te4a_           2 ADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP   57 (111)
T ss_dssp             CSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred             CCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence            4455 5777777777765432            357889999999999999999999987631           234678


Q ss_pred             HHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 039940          155 LLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLS  217 (449)
Q Consensus       155 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~  217 (449)
                      +...+ +++++.++..++++|..+..          ...++.|..+++++++.++..++.+|.
T Consensus        58 L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88888 78899999999999998743          367899999999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.0021  Score=52.96  Aligned_cols=224  Identities=9%  Similarity=0.102  Sum_probs=160.5

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh----HHHHHHHh-CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 039940          191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND----KIQAVIEA-GVCGPLVELLGHPSPSVLIPALRTVGNIVTGD  265 (449)
Q Consensus       191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~  265 (449)
                      .+.+..++..|..=+-+.+..+..+..++.+...+    ..+.+... +++..|+..-  .++++...+-..|..++.+ 
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~-  144 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRH-  144 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTS-
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhh-
Confidence            46788888888888999999999999998865432    23333322 3333443332  4566666666666666665 


Q ss_pred             hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC---ChHHHHHHhhcCchhHHHHHHHH
Q 039940          266 DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG---LIVPLVNLLQDAEFDIKKEAAWA  342 (449)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~ll~~~~~~v~~~a~~a  342 (449)
                      +.....++....+..+.+.+..+ +-++...|..++..+....+.....++..+   ++..+-.++.+++.-+|..+...
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            77778888888999999999999 999999999999998876666666666533   57777788999999999999999


Q ss_pred             HHHhhccC-CHHHH-HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcc--h
Q 039940          343 ISNATKAG-TQEQI-KYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAE--G  418 (449)
Q Consensus       343 L~~l~~~~-~~~~~-~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  418 (449)
                      |+.+...- +.... +++-+..-+..++.++++....++..|..++.-+.....+.          .++...+....  .
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp----------~~I~~IL~~Nr~kL  293 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL  293 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCC----------HHHHHHHHHhHHHH
Confidence            99998741 11222 33333456889999999999999999999998777766442          23455554442  4


Q ss_pred             HHHHHHHhcC
Q 039940          419 FKKIEDLKSH  428 (449)
Q Consensus       419 ~~~l~~l~~~  428 (449)
                      ++-|.....+
T Consensus       294 l~fl~~f~~d  303 (330)
T d1upka_         294 IEFLSKFQND  303 (330)
T ss_dssp             HHHHHHTTTT
T ss_pred             HHHHHhCCCC
Confidence            5556666544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.015  Score=47.83  Aligned_cols=202  Identities=12%  Similarity=0.085  Sum_probs=150.6

Q ss_pred             HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh----hHHHHHh-cCCHHHHHHHhccCCchhHHHHHHHHHH
Q 039940          228 QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF----QTQCVIN-HGAVPYLLALLINNHKKSIKKESCWTVS  302 (449)
Q Consensus       228 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~  302 (449)
                      +.+...+++..++..|..-+.+.|..+..+++++.+....    ..+.+.. ..++..|+....   ++++--.+...|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHH
Confidence            3466678899999999988999999999999999765322    2233432 234444444443   5566666777777


Q ss_pred             HHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcC---ChHHHHhhccCCCHHHH
Q 039940          303 NITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREG---CIKPLCDLLLCADPEIV  379 (449)
Q Consensus       303 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~~~~L~~ll~~~~~~~~  379 (449)
                      .++.+ +.....++....+..+.+.+..++.++...|..++..+... .+.....++..+   .+..+..++++++.-++
T Consensus       140 Ecik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh-CHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            77664 56677888888899999999999999999999999999887 455555555533   46677889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940          380 TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY  444 (449)
Q Consensus       380 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~  444 (449)
                      ..++..|..++-...+..          .....+.+..-++.+..|..+++..|+-.|-.+..-|
T Consensus       218 RqSlKLLgelLldr~N~~----------vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvF  272 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  272 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHH----------HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhh
Confidence            999999999997766543          2344555556788889999999999988887766533

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.12  E-value=0.04  Score=46.82  Aligned_cols=174  Identities=16%  Similarity=0.141  Sum_probs=110.6

Q ss_pred             HHHHHHHHcc---cccHHHHHHHHHHHHHhhc----CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940          152 LIPLLAQLNE---HARLSMLRIGTWTLSNLCK----GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN  224 (449)
Q Consensus       152 i~~l~~~l~~---~~~~~~~~~a~~~l~~l~~----~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  224 (449)
                      +..+..++..   ..++.+...+..+++++..    ..+.........+...+.+.....+.+-+...+.+|+|+..  +
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p  202 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P  202 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H
Confidence            3355555532   2356677777766665543    33334344445555556666667777777888999999852  2


Q ss_pred             hHHHHHHHhCcHHHHHHhhCCC-------CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc-cCCchhHHHH
Q 039940          225 DKIQAVIEAGVCGPLVELLGHP-------SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI-NNHKKSIKKE  296 (449)
Q Consensus       225 ~~~~~~~~~~~~~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~  296 (449)
                               +.++.+..++.+.       ...+|..|++++.+++...+...        .+.+..++. ...++++|..
T Consensus       203 ---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRia  265 (336)
T d1lsha1         203 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  265 (336)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHH
Confidence                     3456677777542       34589999999999987655432        233445543 3337889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHH
Q 039940          297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQ  354 (449)
Q Consensus       297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~  354 (449)
                      |+..+... .-+..         .+..+...+.. .+..|.......|.++....+|+.
T Consensus       266 A~~~lm~t-~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         266 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHhc-CCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcch
Confidence            98888764 22333         34455555644 488899999999999998766543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.053  Score=53.41  Aligned_cols=299  Identities=9%  Similarity=0.033  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch--------hhhHh--hc
Q 039940           80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC--------RNLVL--HE  149 (449)
Q Consensus        80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~--------~~~~~--~~  149 (449)
                      ..++..++++++..+.....  ...  ..+++.++.+|.+++..++..|++++..++......        .+.+.  -.
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67888999999998873221  111  246899999999999999999999999998533211        00010  01


Q ss_pred             CCHHHHHHHHcccccH----HHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----C-CCHHHHHHHHHHHHHcc
Q 039940          150 EALIPLLAQLNEHARL----SMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH----L-DDEEVLRNVCWTLSNLS  220 (449)
Q Consensus       150 ~~i~~l~~~l~~~~~~----~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----~-~~~~~~~~~~~~l~~l~  220 (449)
                      ..+..++..+......    .....++.++..+..............+++.+...+.    + .++.....+..++..+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            1233344444222211    1123455555555544333333333455555555442    2 25667777777777776


Q ss_pred             cCC-hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHH
Q 039940          221 DGT-NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCW  299 (449)
Q Consensus       221 ~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  299 (449)
                      ... ++... -....++|.+...+.....+....++..+..+..........+.  ..++.++...... ..........
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~-~~~~~~~~~~  703 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNVWE-LKGNIPAVTR  703 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGGGC-CTTTHHHHHH
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH--HHHHHHhhHHHHH-HhhhHHHHHH
Confidence            432 33323 23346778888888777777777777777666543322111110  1223332222212 2223334444


Q ss_pred             HHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHH
Q 039940          300 TVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEI  378 (449)
Q Consensus       300 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~  378 (449)
                      .+.++....++....  ..+++..+..++....  ....+...+..+......+....... ..+..+...+++ ..+.+
T Consensus       704 ~l~~~~~~~~~~~~~--~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l~-~i~~~~~~~l~~~~~~~~  778 (959)
T d1wa5c_         704 LLKSFIKTDSSIFPD--LVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIK-QIAVLLLQRLQNSKTERY  778 (959)
T ss_dssp             HHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHGGGSSCCHHH
T ss_pred             HHHHHHHhCHHhhcc--hHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHhHHH-HHHHHHHHHHHhcccHHH
Confidence            444443211110000  0112334444454332  23456666666665544333222121 244555555554 34556


Q ss_pred             HHHHHHHHHHHHH
Q 039940          379 VTVCLKGLENILK  391 (449)
Q Consensus       379 ~~~~~~~l~~l~~  391 (449)
                      ....+..+..++-
T Consensus       779 ~~~~~~~~~~~~~  791 (959)
T d1wa5c_         779 VKKLTVFFGLISN  791 (959)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665553

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.035  Score=54.80  Aligned_cols=302  Identities=9%  Similarity=0.067  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh----C--CCChHHHHHHHHHHHHHhcCCCchhhhHhh----cCC
Q 039940           82 LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL----A--SPSDDVREQAVWALGNIVAHSPGCRNLVLH----EEA  151 (449)
Q Consensus        82 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l----~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~  151 (449)
                      .+..|...+..++...++.....+    .+.+...+    .  +.+...++.++.+++.+.............    ...
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~  452 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIF----LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             HHHHHHHHHHHHHHhccccchHHH----HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence            455666667776654333221111    22222222    2  356788888888888886432111111000    011


Q ss_pred             HHH----HHHHHc--ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940          152 LIP----LLAQLN--EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND  225 (449)
Q Consensus       152 i~~----l~~~l~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~  225 (449)
                      .+.    +...+.  ......++..++|+++..+....   ......+++.++.++.+++..++..+++++..++.....
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~  529 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence            111    222231  22346788899999999887642   234578899999999999999999999999998753221


Q ss_pred             H-----------HHHHHHhCcHHHHHHhhCCCCCc-----chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH----h
Q 039940          226 K-----------IQAVIEAGVCGPLVELLGHPSPS-----VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL----L  285 (449)
Q Consensus       226 ~-----------~~~~~~~~~~~~L~~ll~~~~~~-----v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l----l  285 (449)
                      .           ....++ .++..++..+......     ....++.++..+.....+...... ..+++.+...    .
T Consensus       530 ~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~  607 (959)
T d1wa5c_         530 NTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMA  607 (959)
T ss_dssp             SSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHT
T ss_pred             cccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            0           000111 2344445544332221     223456666555432111111111 1123333333    3


Q ss_pred             ccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCCh
Q 039940          286 INNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCI  364 (449)
Q Consensus       286 ~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~  364 (449)
                      +++.++.....+..+++.+.. .+++....+ ...++|.+...+.....+....+...+..+...... .-..+  ...+
T Consensus       608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~~l~  683 (959)
T d1wa5c_         608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSAT-IPESI--KPLA  683 (959)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSS-CCTTT--GGGH
T ss_pred             cCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCC-ccHHH--HHHH
Confidence            344356666777777777764 233333333 235678888888777666777777666666543210 00000  0122


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940          365 KPLCDLLLCADPEIVTVCLKGLENILKVGEAK  396 (449)
Q Consensus       365 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~  396 (449)
                      +.++.............+..++.+++..+...
T Consensus       684 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  715 (959)
T d1wa5c_         684 QPLLAPNVWELKGNIPAVTRLLKSFIKTDSSI  715 (959)
T ss_dssp             HHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGG
T ss_pred             HHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHh
Confidence            33333233333344566777777777766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.55  E-value=0.00055  Score=55.11  Aligned_cols=151  Identities=18%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940          195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN  274 (449)
Q Consensus       195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  274 (449)
                      ..|..+++++++.|+..+...|.                  .+.+..++.++++.|+..+...+.               
T Consensus        69 ~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~d~~VR~~aa~~l~---------------  115 (233)
T d1lrva_          69 EALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADRLP---------------  115 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHHSC---------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCCChhHHHHHHhccC---------------
Confidence            45677888899999988875431                  133445555666666655543321               


Q ss_pred             cCCHHHHHHHhccCCchhHHHHHHHHH-----HHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH----
Q 039940          275 HGAVPYLLALLINNHKKSIKKESCWTV-----SNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS----  344 (449)
Q Consensus       275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l-----~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~----  344 (449)
                         .+.|..++.++ ++.||..++..+     ..+.. .++..+..+...-..+.|..++++.++.|+..++..+.    
T Consensus       116 ---~~~L~~Ll~D~-d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L  191 (233)
T d1lrva_         116 ---LEQLEQMAADR-DYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDL  191 (233)
T ss_dssp             ---TGGGGGGTTCS-SHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGG
T ss_pred             ---HHHHHHHhcCC-CHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHHH
Confidence               11233334444 444444443321     11111 12222222222223455666677777777777765432    


Q ss_pred             -HhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 039940          345 -NATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCL  383 (449)
Q Consensus       345 -~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~  383 (449)
                       .++...+...+....+. ....++..|.+++++|+..+.
T Consensus       192 ~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         192 LELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             GGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence             33333333333333332 233444555666666665544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.42  E-value=0.0016  Score=52.29  Aligned_cols=154  Identities=10%  Similarity=0.108  Sum_probs=92.3

Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940          236 CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV  315 (449)
Q Consensus       236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  315 (449)
                      +..|..+++++++.||..++..|+                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456778899999999998875431                  23466677777 8999988765431             


Q ss_pred             HHCCChHHHHHHhhcCchhHHHHHHHH-----HHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH---
Q 039940          316 IDAGLIVPLVNLLQDAEFDIKKEAAWA-----ISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE---  387 (449)
Q Consensus       316 ~~~~~~~~L~~ll~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~---  387 (449)
                           .+.|..++.++++.||..++..     |..++...+++.+......-..+.|..+++++++.++..+...+.   
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~  190 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDD  190 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGG
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHH
Confidence                 2344455666666666666543     333334445555555555555677777888888888877775542   


Q ss_pred             --HHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 039940          388 --NILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVT  439 (449)
Q Consensus       388 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~  439 (449)
                        .+....            .-.......+..+.+.+..| .+++++|++.+.+
T Consensus       191 L~~l~~D~------------d~~VR~aaae~~~~~ll~~L-~D~d~~VR~aA~~  231 (233)
T d1lrva_         191 LLELLHDP------------DWTVRLAAVEHASLEALREL-DEPDPEVRLAIAG  231 (233)
T ss_dssp             GGGGGGCS------------SHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHHC
T ss_pred             HHHHHhCC------------CHHHHHHHHHhccHHHHHHh-CCCCHHHHHHHHH
Confidence              111111            01122222233344555555 6888998887753

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.29  Score=41.38  Aligned_cols=165  Identities=14%  Similarity=0.107  Sum_probs=114.8

Q ss_pred             hhhHHHHHhcCCHHHHHHHhcc----C------CchhHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHhhcCchh
Q 039940          266 DFQTQCVINHGAVPYLLALLIN----N------HKKSIKKESCWTVSNITAGNRKQIQAVI-DAGLIVPLVNLLQDAEFD  334 (449)
Q Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~----~------~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~~~~~L~~ll~~~~~~  334 (449)
                      ....+.+ ..+++..|+.+|..    +      .+.....++..||..+.. +......++ ..+.+..+...+.++.+.
T Consensus        36 ~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~  113 (343)
T d2bnxa1          36 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPN  113 (343)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred             chHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCchH
Confidence            3344444 34566666666521    1      134577788899988865 445555665 467899999999999999


Q ss_pred             HHHHHHHHHHHhhccCC-HHH----------HHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940          335 IKKEAAWAISNATKAGT-QEQ----------IKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEAKKNRGST  402 (449)
Q Consensus       335 v~~~a~~aL~~l~~~~~-~~~----------~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~  402 (449)
                      ++..|...|..++.... ++.          .....+.+-+..+++.++.. +.+.+..++..+..++...++...    
T Consensus       114 tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~----  189 (343)
T d2bnxa1         114 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----  189 (343)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH----
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH----
Confidence            99999999988875321 111          12222345678888888765 577888899889888877665542    


Q ss_pred             CCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 039940          403 IGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVT  439 (449)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~  439 (449)
                         ......-|..+|..+.+..+....++++......
T Consensus       190 ---R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~~  223 (343)
T d2bnxa1         190 ---RVHIRSELMRLGLHQVLQELREIENEDMKVQLCV  223 (343)
T ss_dssp             ---HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHCChHHHHHHHHccCChHHHHHHHH
Confidence               3346788889999999999999999887665433

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.36  Score=40.79  Aligned_cols=157  Identities=14%  Similarity=0.115  Sum_probs=99.7

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc----C-----C-CCHHHHHHHHHHHHHhc
Q 039940           26 AMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL----R-----E-DYPRLQFEAAWVLTNIA   94 (449)
Q Consensus        26 ~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~----~-----~-~~~~~~~~a~~~L~~l~   94 (449)
                      ..+..|++.- .+.....+..|.--+..+.....+.+ ..+++..|+.+|.    .     . .+...+..++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            4455665543 23334445555444444323345555 4556777777663    1     1 12457888999999999


Q ss_pred             CCChhhhHHH-HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC--CchhhhHh----------hcCCHHHHHHHHcc
Q 039940           95 SGTSVNTKVL-IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS--PGCRNLVL----------HEEALIPLLAQLNE  161 (449)
Q Consensus        95 ~~~~~~~~~~-~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~----------~~~~i~~l~~~l~~  161 (449)
                      . +......+ -..+++..+...+.+++..++..|+.+|..+|...  +.....+.          +.+-+.++++.+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 45555554 45588999999999999999999999999998543  22222221          23456677777755


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCC
Q 039940          162 HARLSMLRIGTWTLSNLCKGKPQ  184 (449)
Q Consensus       162 ~~~~~~~~~a~~~l~~l~~~~~~  184 (449)
                      ..+.+.+..++..+..+....+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            55677777777777777766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.095  Score=38.02  Aligned_cols=76  Identities=9%  Similarity=-0.080  Sum_probs=63.0

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..+..-+.+.++.++..|+..|-.++..+++.+...+.+.+++..|..++..      .+..|+.+++..+.......
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            344567778888999999999999999999889988888888899999988863      46689999999998887655


Q ss_pred             hh
Q 039940          394 EA  395 (449)
Q Consensus       394 ~~  395 (449)
                      ++
T Consensus       126 p~  127 (145)
T d1ujka_         126 PE  127 (145)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.12  Score=37.33  Aligned_cols=76  Identities=9%  Similarity=-0.103  Sum_probs=62.8

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..|..-+.++++.++..|+..|-.++.++++.+...+...++++.|..++..      .++.|+.+++.++.......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            344566677888999999999999999999888888888888889999998863      46789999999998887765


Q ss_pred             hh
Q 039940          394 EA  395 (449)
Q Consensus       394 ~~  395 (449)
                      .+
T Consensus       119 ~~  120 (143)
T d1mhqa_         119 PE  120 (143)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.39  E-value=1.8  Score=36.07  Aligned_cols=165  Identities=15%  Similarity=0.165  Sum_probs=109.0

Q ss_pred             hHHHHHhhCC----CChHHHHHHHHHHHHHhc----CCCchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHHh
Q 039940          110 VPIFVKLLAS----PSDDVREQAVWALGNIVA----HSPGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSNL  178 (449)
Q Consensus       110 i~~L~~~l~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l  178 (449)
                      +..+..++.+    .++.++..+.-+++++..    ..+.+..     ..++.+...+.   ...+.+-...++.+|+|+
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  199 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  199 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhcc
Confidence            5666667764    467888888888887763    3333222     23444444442   345566667788999998


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCC-------CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCc
Q 039940          179 CKGKPQPPFDQVRPVLPALAQLIHLD-------DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPS  249 (449)
Q Consensus       179 ~~~~~~~~~~~~~~~l~~l~~ll~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~  249 (449)
                      -..          ..++.+..++...       ...++..+++++.++....+....        +.+..+..+  .+++
T Consensus       200 g~p----------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~E  261 (336)
T d1lsha1         200 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  261 (336)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCH----------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChH
Confidence            632          6778888888532       467999999999999877664333        334444433  4577


Q ss_pred             chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 039940          250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG  307 (449)
Q Consensus       250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~  307 (449)
                      +|..|+..+...  . +..       ..+..+...+..+.+.+|+......|.+++..
T Consensus       262 vRiaA~~~lm~t--~-P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         262 LRIRSCIVFFES--K-PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHHT--C-CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc--C-CCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            888888777432  1 221       14566777777666889999999999999873

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.51  Score=34.22  Aligned_cols=75  Identities=9%  Similarity=-0.051  Sum_probs=60.9

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG  393 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~  393 (449)
                      .+..+..-+.+.++.++..|+..|-.++..+++.+...+....++..|..++..      .+..|+.+++..+.......
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            345666677888999999999999999999888888888777888888888864      35679999999998887665


Q ss_pred             h
Q 039940          394 E  394 (449)
Q Consensus       394 ~  394 (449)
                      +
T Consensus       120 ~  120 (151)
T d1juqa_         120 P  120 (151)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.27  E-value=0.29  Score=35.36  Aligned_cols=76  Identities=4%  Similarity=-0.038  Sum_probs=60.6

Q ss_pred             ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhh
Q 039940          320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEA  395 (449)
Q Consensus       320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~  395 (449)
                      .+..|..-+.++++.++..|+..|-.++.+++..+...+...+.+..|..++++. +..++.+++..+.........
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  119 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS  119 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            3456667788889999999999999999987777777776777888888887654 667999999999888775543

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=4  Score=33.84  Aligned_cols=216  Identities=12%  Similarity=0.067  Sum_probs=116.3

Q ss_pred             CCCHHHHHHHHHHHHHhcC---CChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHH
Q 039940           77 EDYPRLQFEAAWVLTNIAS---GTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALI  153 (449)
Q Consensus        77 ~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  153 (449)
                      +.|+.++. +-..+..+..   -++......++...+..|+.++.++|++-|.....+|.++-+.-+..|..+. .....
T Consensus       100 ~sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir-~~i~~  177 (343)
T d2jaka1         100 AAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINN  177 (343)
T ss_dssp             TTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHH
T ss_pred             CCCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHH
Confidence            34454443 3344444433   1233334445556788999999999999999999999998766666666553 23344


Q ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHH
Q 039940          154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVI  231 (449)
Q Consensus       154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~  231 (449)
                      .+.+.+..+....-...+++.++.+..+-..+ ......-....++.+.+... ...-.....++......++.....+ 
T Consensus       178 if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-  256 (343)
T d2jaka1         178 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-  256 (343)
T ss_dssp             HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             HHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-
Confidence            55555544445555666777788877775333 33333445555666665543 2233334444444444444333211 


Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHH
Q 039940          232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTV  301 (449)
Q Consensus       232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l  301 (449)
                          +..+++.=-.++..-...-+.-+..+...- +...+.+. ..++..+...++++ +.+|.+.|....
T Consensus       257 ----i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         257 ----VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             ----HHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             ----HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence                222222211233333333344455554432 22222222 23667777788888 787877765443

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.86  E-value=0.92  Score=32.55  Aligned_cols=69  Identities=17%  Similarity=0.199  Sum_probs=54.8

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS-HGNNGIREKAVTIL  441 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~i~~~a~~~i  441 (449)
                      ++..|..-++++++.++..|+.+|..+++.+..            .|...+...+.++.+..+.. .....|++++..++
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~------------~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA------------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccch------------HHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            466677778889999999999999999998755            25666666677788877754 45778999999998


Q ss_pred             HH
Q 039940          442 ET  443 (449)
Q Consensus       442 ~~  443 (449)
                      +.
T Consensus       111 ~~  112 (145)
T d1dvpa1         111 QT  112 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=1.6  Score=31.10  Aligned_cols=69  Identities=12%  Similarity=0.089  Sum_probs=55.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc------CCCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS------HGNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~i~~~  436 (449)
                      ++..|..-+.++++.++..++.+|..+++.+..            .|...+....+++.+..+..      ..++.|+++
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~------------~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~k  106 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            466677778889999999999999999998744            36777777788888888864      356889999


Q ss_pred             HHHHHHH
Q 039940          437 AVTILET  443 (449)
Q Consensus       437 a~~~i~~  443 (449)
                      +..+++.
T Consensus       107 il~li~~  113 (143)
T d1mhqa_         107 VIEILFS  113 (143)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=1.6  Score=31.26  Aligned_cols=70  Identities=13%  Similarity=0.149  Sum_probs=56.9

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc------CCCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS------HGNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~i~~~  436 (449)
                      ++..|..-+.++++.++..++.+|..+++.+..            .|...+.+.++++.|..+..      ..+..|+++
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~------------~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~k  113 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK------------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  113 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCH------------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhH------------HHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHH
Confidence            466677778889999999999999999988644            36777888888888888864      356789999


Q ss_pred             HHHHHHHh
Q 039940          437 AVTILETY  444 (449)
Q Consensus       437 a~~~i~~~  444 (449)
                      +..+++..
T Consensus       114 il~li~~W  121 (145)
T d1ujka_         114 ILELLYSW  121 (145)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.05  E-value=2.5  Score=30.33  Aligned_cols=70  Identities=13%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC------CCHHHHHH
Q 039940          363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH------GNNGIREK  436 (449)
Q Consensus       363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~i~~~  436 (449)
                      ++..|..-+.++++.++..++.+|..+++.+..            .|...+....+++.+..+...      ..+.|+++
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~------------~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~k  107 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR------------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  107 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccH------------HHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHH
Confidence            466677778889999999999999999998765            367777777888888888643      36789999


Q ss_pred             HHHHHHHh
Q 039940          437 AVTILETY  444 (449)
Q Consensus       437 a~~~i~~~  444 (449)
                      +..+++..
T Consensus       108 il~ll~~W  115 (151)
T d1juqa_         108 VIELLYSW  115 (151)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888763