Citrus Sinensis ID: 039967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE
Secondary Structure (PSIPRED)
ccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccccccccEEccccEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEccHHHHHccccccEEEccccEEEEcccccccccccccEEEccccEEccccccccccccccccEEcccccccccccccccccEEcccccccccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccEEEEccccccccccHHHccccccEEEEEccccEEccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccccHHccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHcc
Coil and Loop (DISEMBL)
fafssfphlvhlnlsfnilfgiippqignlsnlqyldlgsnqlsgvipleighlNQLRILYFDVnqlhgsipleigQLSLINVLALCHNYFVCNLAnfylnnnslfnsiplvlgnlnslstmdlsqnqfsgsiplslgnlsnldklylysnsfsgsipSIIGNLKSLLQldlsenqligsiplsfgnlssLTLMSLFnnslsgslppilgnlKSLSALGLHInqlsgvipssignlSSLRALYLYnnglysfvpEEIRYLTSLSELELCTNHlsgviphsignLTGLLLLNMCEnhlsgpipksfknLTSVERVLLNqnnlsgkvnvpklGTFIISVnnisesippeigdspklqvldlssnnivgeipvqLGKLFSLNKLILNLnqlsggmplelGSLIELQYLDlstnklkssipkSIGNLLRLCYLDLSNNQFGHKILVELE
Flexible Loop (DISEMBL)
FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQnnlsgkvnvpkLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE
Low Complexity Region (SEG)
FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCnlanfylnnnslfnsIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE
Disordered region (IsUnstruct)
*****FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESI********KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILV***
Disordered Region (DISOPRED)
FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL*
Disordered Region (DISEMBL)
FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE
Disordered Region (DISPRO)
*AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.988	0.421	0.388	2e-78
Q9LP24	1120	Probable leucine-rich rep	no	no	0.988	0.392	0.371	1e-75
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.979	0.396	0.378	3e-70
O49318	1124	Probable leucine-rich rep	no	no	0.961	0.380	0.383	1e-65
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.961	0.388	0.365	2e-64
Q9LHP4	1141	Receptor-like protein kin	no	no	0.937	0.365	0.392	3e-64
P93194	1109	Receptor-like protein kin	N/A	no	0.939	0.376	0.378	8e-63
Q9FL28	1173	LRR receptor-like serine/	no	no	0.973	0.369	0.357	1e-61
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.970	0.345	0.381	6e-60
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.952	0.338	0.361	1e-59

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  293 bits (751), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/479 (38%), Positives = 267/479 (55%), Gaps = 39/479 (8%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F FSS P+L  ++LS N   G I P  G  S L+Y DL  NQL G IP E+G L+ L  L
Sbjct: 112 FPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTL 171

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFV----------CNLANFYLNNNSLFNSIP 110
           +   N+L+GSIP EIG+L+ +  +A+  N               L N YL  NSL  SIP
Sbjct: 172 HLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIP 231

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             +GNL +L  + L +N  +G IP S GNL N+  L ++ N  SG IP  IGN+ +L  L
Sbjct: 232 SEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTL 291

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
            L  N+L G IP + GN+ +L ++ L+ N L+GS+PP LG ++S+  L +  N+L+G +P
Sbjct: 292 SLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVP 351

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
            S G L++L  L+L +N L   +P  I   T L+ L+L TN+ +G +P +I     L  L
Sbjct: 352 DSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENL 411

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVP---------------------- 328
            + +NH  GP+PKS ++  S+ RV    N+ SG ++                        
Sbjct: 412 TLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLS 471

Query: 329 -------KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL 381
                  KL  FI+S N+I+ +IPPEI +  +L  LDLSSN I GE+P  +  +  ++KL
Sbjct: 472 ANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKL 531

Query: 382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
            LN N+LSG +P  +  L  L+YLDLS+N+  S IP ++ NL RL Y++LS N     I
Sbjct: 532 QLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTI 590

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  284 bits (726), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 196/527 (37%), Positives = 275/527 (52%), Gaps = 87/527 (16%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F F S  +L +++LS N+L G IPPQ GNLS L Y DL +N L+G I   +G+L  L +L
Sbjct: 96  FPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVL 155

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFV----------CNLANFYLNNNSLFNSIP 110
           Y   N L   IP E+G +  +  LAL  N              NL   YL  N L   IP
Sbjct: 156 YLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIP 215

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             LGN+ S++ + LSQN+ +GSIP +LGNL NL  LYLY N  +G IP  IGN++S+  L
Sbjct: 216 PELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNL 275

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
            LS+N+L GSIP S GNL +LTL+SLF N L+G +PP LGN++S+  L L  N+L+G IP
Sbjct: 276 ALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIP 335

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS---------------- 274
           SS+GNL +L  LYLY N L   +P E+  + S+ +L+L  N L+                
Sbjct: 336 SSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYL 395

Query: 275 --------GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV- 325
                   GVIP  +GN+  ++ L++ +N L+G +P SF N T +E + L  N+LSG + 
Sbjct: 396 YLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIP 455

Query: 326 ----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL--------- 372
               N   L T I+  NN +   P  +    KLQ + L  N++ G IP  L         
Sbjct: 456 PGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRA 515

Query: 373 --------GKLF-------------------------------SLNKLILNLNQLSGGMP 393
                   G +F                                L  LI++ N ++G +P
Sbjct: 516 RFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIP 575

Query: 394 LELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
            E+ ++ +L  LDLSTN L   +P++IGNL  L  L L+ NQ   ++
Sbjct: 576 TEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRV 622

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 180/475 (37%), Positives = 248/475 (52%), Gaps = 39/475 (8%)

Query: 9   LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
           L  L L  N LFG IP QIGNLS+LQ L + SN L+GVIP  +  L QLRI+    N   
Sbjct: 141 LKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFS 200

Query: 69  GSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIPLVLGNLNS 118
           G IP EI     + VL L  N            + NL +  L  N L   IP  +GN++ 
Sbjct: 201 GVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISR 260

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L  + L +N F+GSIP  +G L+ + +LYLY+N  +G IP  IGNL    ++D SENQL 
Sbjct: 261 LEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLT 320

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
           G IP  FG++ +L L+ LF N L G +P  LG L  L  L L IN+L+G IP  +  L  
Sbjct: 321 GFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPY 380

Query: 239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298
           L  L L++N L   +P  I + ++ S L++  N LSG IP        L+LL++  N LS
Sbjct: 381 LVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLS 440

Query: 299 GPIPKSFKNLTSVERVLLNQNNLSGKV-----------------------------NVPK 329
           G IP+  K   S+ +++L  N L+G +                              +  
Sbjct: 441 GNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKN 500

Query: 330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389
           L    ++ NN +  IPPEIG+  K+   ++SSN + G IP +LG   ++ +L L+ N+ S
Sbjct: 501 LERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFS 560

Query: 390 GGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           G +  ELG L+ L+ L LS N+L   IP S G+L RL  L L  N     I VEL
Sbjct: 561 GYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVEL 615

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  250 bits (639), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 170/443 (38%), Positives = 243/443 (54%), Gaps = 15/443 (3%)

Query: 9   LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
           +  L+LS   L GI+ P IG L NL YL+L  N L+G IP EIG+ ++L +++ + NQ  
Sbjct: 87  VTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFG 146

Query: 69  GSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIPLVLGNLNS 118
           GSIP+EI +LS +    +C+N            + NL       N+L   +P  LGNLN 
Sbjct: 147 GSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNK 206

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L+T    QN FSG+IP  +G   NL  L L  N  SG +P  IG L  L ++ L +N+  
Sbjct: 207 LTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFS 266

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
           G IP   GNL+SL  ++L+ NSL G +P  +GN+KSL  L L+ NQL+G IP  +G LS 
Sbjct: 267 GFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSK 326

Query: 239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298
           +  +    N L   +P E+  ++ L  L L  N L+G+IP+ +  L  L  L++  N L+
Sbjct: 327 VMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLT 386

Query: 299 GPIPKSFKNLTSVERVLLNQNNLSGKVN-----VPKLGTFIISVNNISESIPPEIGDSPK 353
           GPIP  F+NLTS+ ++ L  N+LSG +         L     S N +S  IPP I     
Sbjct: 387 GPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN 446

Query: 354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413
           L +L+L SN I G IP  + +  SL +L +  N+L+G  P EL  L+ L  ++L  N+  
Sbjct: 447 LILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFS 506

Query: 414 SSIPKSIGNLLRLCYLDLSNNQF 436
             +P  IG   +L  L L+ NQF
Sbjct: 507 GPLPPEIGTCQKLQRLHLAANQF 529

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 251/471 (53%), Gaps = 43/471 (9%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
           +SS P ++ LNLS  +L G + P IG L +L+ LDL  N LSG IP EIG+ + L IL  
Sbjct: 69  YSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKL 128

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
           + NQ  G IP+EIG+L               +L N  + NN +  S+P+ +GNL SLS +
Sbjct: 129 NNNQFDGEIPVEIGKL--------------VSLENLIIYNNRISGSLPVEIGNLLSLSQL 174

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
               N  SG +P S+GNL  L       N  SGS+PS IG  +SL+ L L++NQL G +P
Sbjct: 175 VTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELP 234

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
              G L  L+ + L+ N  SG +P  + N  SL  L L+ NQL G IP  +G+L SL  L
Sbjct: 235 KEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFL 294

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
           YLY NGL   +P EI  L+   E++   N L+G IP  +GN+ GL LL + EN L+G IP
Sbjct: 295 YLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIP 354

Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPK---LGTFIISV--NNISESIPPEIGDSPKLQVL 357
                L ++ ++ L+ N L+G + +      G F++ +  N++S +IPP++G    L VL
Sbjct: 355 VELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVL 414

Query: 358 DLS------------------------SNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP 393
           D+S                        +NN+ G IP  +    +L +L L  N L G  P
Sbjct: 415 DMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFP 474

Query: 394 LELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
             L   + +  ++L  N+ + SIP+ +GN   L  L L++N F  ++  E+
Sbjct: 475 SNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREI 525

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  246 bits (628), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 173/441 (39%), Positives = 245/441 (55%), Gaps = 24/441 (5%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           L+LS N L G IP  +  L NL+ L L SNQL+G IP +I   ++L+ L    N L GSI
Sbjct: 134 LDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSI 193

Query: 72  PLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSG 131
           P E+G+LS + V+ +               N  +   IP  +G+ ++L+ + L++   SG
Sbjct: 194 PTELGKLSGLEVIRIG-------------GNKEISGQIPSEIGDCSNLTVLGLAETSVSG 240

Query: 132 SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSL 191
           ++P SLG L  L+ L +Y+   SG IPS +GN   L+ L L EN L GSIP   G L+ L
Sbjct: 241 NLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKL 300

Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS 251
             + L+ NSL G +P  +GN  +L  + L +N LSG IPSSIG LS L    + +N    
Sbjct: 301 EQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSG 360

Query: 252 FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV 311
            +P  I   +SL +L+L  N +SG+IP  +G LT L L     N L G IP    + T +
Sbjct: 361 SIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDL 420

Query: 312 ERVLLNQNNLSGKV--------NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
           + + L++N+L+G +        N+ KL   +IS N++S  IP EIG+   L  L L  N 
Sbjct: 421 QALDLSRNSLTGTIPSGLFMLRNLTKL--LLIS-NSLSGFIPQEIGNCSSLVRLRLGFNR 477

Query: 364 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL 423
           I GEIP  +G L  +N L  + N+L G +P E+GS  ELQ +DLS N L+ S+P  + +L
Sbjct: 478 ITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSL 537

Query: 424 LRLCYLDLSNNQFGHKILVEL 444
             L  LD+S NQF  KI   L
Sbjct: 538 SGLQVLDVSANQFSGKIPASL 558

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  241 bits (615), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 166/438 (37%), Positives = 236/438 (53%), Gaps = 20/438 (4%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
           S   HL  + LS N  FG IP Q+GN S L+++DL SN  +G IP  +G L  LR L   
Sbjct: 89  SHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLF 148

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMD 123
            N L G  P  +        L++ H      L   Y   N L  SIP  +GN++ L+T+ 
Sbjct: 149 FNSLIGPFPESL--------LSIPH------LETVYFTGNGLNGSIPSNIGNMSELTTLW 194

Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
           L  NQFSG +P SLGN++ L +LYL  N+  G++P  + NL++L+ LD+  N L+G+IPL
Sbjct: 195 LDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPL 254

Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
            F +   +  +SL NN  +G LPP LGN  SL   G     LSG IPS  G L+ L  LY
Sbjct: 255 DFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLY 314

Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 303
           L  N     +P E+    S+ +L+L  N L G IP  +G L+ L  L++  N+LSG +P 
Sbjct: 315 LAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPL 374

Query: 304 SFKNLTSVERVLLNQNNLSGKVNV-----PKLGTFIISVNNISESIPPEIGDSPKLQVLD 358
           S   + S++ + L QNNLSG++ V      +L +  +  N+ +  IP ++G +  L+VLD
Sbjct: 375 SIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLD 434

Query: 359 LSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK 418
           L+ N   G IP  L     L +L+L  N L G +P +LG    L+ L L  N L+  +P 
Sbjct: 435 LTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPD 494

Query: 419 SIGNLLRLCYLDLSNNQF 436
            +     L + DLS N F
Sbjct: 495 FVEK-QNLLFFDLSGNNF 511

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  237 bits (605), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 177/495 (35%), Positives = 253/495 (51%), Gaps = 62/495 (12%)

Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
           H+V ++L    L G++ P I NL+ LQ LDL SN  +G IP EIG L +L  L   +N  
Sbjct: 73  HVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYF 132

Query: 68  HGSIPLEIGQLSLINVLALCHNYF-------VCN-----LANFYLNN------------- 102
            GSIP  I +L  I  L L +N         +C      L  F  NN             
Sbjct: 133 SGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLV 192

Query: 103 ---------NSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
                    N L  SIP+ +G L +L+ +DLS NQ +G IP   GNL NL  L L  N  
Sbjct: 193 HLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLL 252

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLK 213
            G IP+ IGN  SL+QL+L +NQL G IP   GNL  L  + ++ N L+ S+P  L  L 
Sbjct: 253 EGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLT 312

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
            L+ LGL  N L G I   IG L SL  L L++N      P+ I  L +L+ L +  N++
Sbjct: 313 QLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNI 372

Query: 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-------- 325
           SG +P  +G LT L  L+  +N L+GPIP S  N T ++ + L+ N ++G++        
Sbjct: 373 SGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN 432

Query: 326 --------------------NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV 365
                               N   L T  ++ NN++ ++ P IG   KL++L +S N++ 
Sbjct: 433 LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLT 492

Query: 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425
           G IP ++G L  LN L L+ N  +G +P E+ +L  LQ L + +N L+  IP+ + ++  
Sbjct: 493 GPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKL 552

Query: 426 LCYLDLSNNQFGHKI 440
           L  LDLSNN+F  +I
Sbjct: 553 LSVLDLSNNKFSGQI 567

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  231 bits (590), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 241/448 (53%), Gaps = 16/448 (3%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
           F  F +L+HL+LS N L G IP  + NL++L+ L L SNQL+G IP ++G L  +R L  
Sbjct: 91  FGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRI 150

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFV----------CNLANFYLNNNSLFNSIPLV 112
             N+L G IP  +G L  + +LAL                  + +  L +N L   IP  
Sbjct: 151 GDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAE 210

Query: 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           LGN + L+    ++N  +G+IP  LG L NL+ L L +NS +G IPS +G +  L  L L
Sbjct: 211 LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSL 270

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232
             NQL G IP S  +L +L  + L  N+L+G +P    N+  L  L L  N LSG +P S
Sbjct: 271 MANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKS 330

Query: 233 I-GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLN 291
           I  N ++L  L L    L   +P E+    SL +L+L  N L+G IP ++  L  L  L 
Sbjct: 331 ICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLY 390

Query: 292 MCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPP 346
           +  N L G +  S  NLT+++ ++L  NNL GK+      + KL    +  N  S  IP 
Sbjct: 391 LHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQ 450

Query: 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD 406
           EIG+   L+++D+  N+  GEIP  +G+L  LN L L  N+L GG+P  LG+  +L  LD
Sbjct: 451 EIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILD 510

Query: 407 LSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
           L+ N+L  SIP S G L  L  L L NN
Sbjct: 511 LADNQLSGSIPSSFGFLKGLEQLMLYNN 538

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 238/465 (51%), Gaps = 41/465 (8%)

Query: 11  HLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN----- 65
           +LNL  N L G+IP ++  L+NLQ LDL SN L+GVI  E   +NQL  L    N     
Sbjct: 268 YLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGS 327

Query: 66  --------------------QLHGSIPLEIGQLSLINVLALCHN----------YFVCNL 95
                               QL G IP EI     + +L L +N          + +  L
Sbjct: 328 LPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVEL 387

Query: 96  ANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG 155
            N YLNNNSL  ++   + NL +L    L  N   G +P  +G L  L+ +YLY N FSG
Sbjct: 388 TNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSG 447

Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSL 215
            +P  IGN   L ++D   N+L G IP S G L  LT + L  N L G++P  LGN   +
Sbjct: 448 EMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQM 507

Query: 216 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSG 275
           + + L  NQLSG IPSS G L++L    +YNN L   +P+ +  L +L+ +   +N  +G
Sbjct: 508 TVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNG 567

Query: 276 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKL 330
            I    G+ +  L  ++ EN   G IP      T+++R+ L +N  +G++      + +L
Sbjct: 568 SISPLCGS-SSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISEL 626

Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
               IS N++S  IP E+G   KL  +DL++N + G IP  LGKL  L +L L+ N+  G
Sbjct: 627 SLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVG 686

Query: 391 GMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
            +P E+ SL  +  L L  N L  SIP+ IGNL  L  L+L  NQ
Sbjct: 687 SLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQ 731

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
225456159	1038	PREDICTED: probable LRR receptor-like se	0.997	0.427	0.472	1e-95
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.997	0.430	0.469	3e-94
225456161	1037	PREDICTED: probable LRR receptor-like se	0.997	0.428	0.474	4e-94
359491509	1032	PREDICTED: probable LRR receptor-like se	0.997	0.430	0.467	1e-92
147772402	996	hypothetical protein VITISV_022117 [Viti	0.964	0.430	0.467	8e-90
359491512	1078	PREDICTED: probable LRR receptor-like se	0.966	0.398	0.447	2e-86
255545702	1008	receptor protein kinase, putative [Ricin	0.964	0.425	0.447	3e-82
359484864	1091	PREDICTED: probable LRR receptor-like se	0.993	0.405	0.439	8e-82
60327204	848	Hcr2-p3 [Solanum pimpinellifolium]	0.997	0.523	0.448	1e-81
297846642	1007	hypothetical protein ARALYDRAFT_891227 [	0.957	0.423	0.411	2e-81

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 228/483 (47%), Positives = 295/483 (61%), Gaps = 39/483 (8%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F+FSSFP+L ++++S N L G IPPQIG L  L+YLDL  NQ SG IP EIG L  L +L
Sbjct: 107 FSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSINQFSGGIPSEIGLLTNLEVL 166

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIP 110
           +   NQL+GSIP EIGQL+ +  LAL  N            + NLA+ YL  N L  SIP
Sbjct: 167 HLVQNQLNGSIPHEIGQLASLYELALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSIP 226

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             +GNL +L  +  + N  +G IP + GNL  L  LYL++NS SG IP  IGNLKSL +L
Sbjct: 227 PEMGNLTNLVEIYSNNNNLTGPIPSTFGNLKRLTVLYLFNNSLSGPIPPEIGNLKSLQEL 286

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
            L EN L G IP+S  +LS LTL+ L+ N LSG +P  +GNLKSL  L L  NQL+G IP
Sbjct: 287 SLYENNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIP 346

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
           +S+GNL++L  L+L +N L  ++P+EI  L  L  LE+ TN L G +P  I     L+  
Sbjct: 347 TSLGNLTNLEILFLRDNQLSGYIPQEIGKLHKLVVLEIDTNQLFGSLPEGICQAGSLVRF 406

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------------------------- 325
            + +NHLSGPIPKS KN  ++ R L   N L+G +                         
Sbjct: 407 AVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNISEVVGDCPNLEFIDLSYNRFHGELS 466

Query: 326 ----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL 381
                 P+L    I+ NNI+ SIP + G S  L +LDLSSN++VGEIP ++G L SL  L
Sbjct: 467 HNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLGL 526

Query: 382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441
           ILN NQLSG +P ELGSL  L+YLDLS N+L  SIP+ +G+ L L YL+LSNN+  H I 
Sbjct: 527 ILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIP 586

Query: 442 VEL 444
           V++
Sbjct: 587 VQM 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 227/483 (46%), Positives = 292/483 (60%), Gaps = 39/483 (8%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F+FSSFP+L + +++ N L G IPPQIG LS L+YLDL +NQ SG IP EIG L  L +L
Sbjct: 104 FSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQFSGRIPSEIGLLTNLEVL 163

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIP 110
           +   NQL+GSIP EIGQL  +  L+L  N            + NL N YL+ N L   IP
Sbjct: 164 HLVENQLNGSIPHEIGQLKSLCDLSLYTNKLEGSIPASLGNLSNLTNLYLDENKLSGLIP 223

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             +GNL  L  + L+ N  +G IP +LGNL +L  L LY+N  SG IP+ IGNLK L  L
Sbjct: 224 PEMGNLTKLVELCLNANNLTGPIPSTLGNLKSLTLLRLYNNQLSGPIPTEIGNLKHLRNL 283

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
            LS N L G IP+S G+LS L  + LF+N LSG +P  +GNL+SL  L +  NQL+G IP
Sbjct: 284 SLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEMGNLRSLVDLEISQNQLNGSIP 343

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
           +S+GNL +L  LYL +N L S +P EI  L  L ELE+ TN LSG +P  I     L   
Sbjct: 344 TSLGNLINLEILYLRDNKLSSSIPPEIGKLHKLVELEIDTNQLSGFLPEGICQGGSLENF 403

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------------------------- 325
            + +N L GPIP+S KN  S+ R  L +N L+G +                         
Sbjct: 404 TVFDNFLIGPIPESLKNCPSLARARLQRNQLTGNISEAFGVCPNLYHINLSNNKFYGELS 463

Query: 326 ----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL 381
                  KL    I+ NNI+ SIP + G S +L VL+LSSN++VGEIP +LG + SL KL
Sbjct: 464 QNWGRCHKLQWLDIAGNNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKL 523

Query: 382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441
           ILN N+LSG +P ELGSL +L YLDLS N+L  SIP+ +GN L L YL+LSNN+  H I 
Sbjct: 524 ILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIP 583

Query: 442 VEL 444
           V++
Sbjct: 584 VQM 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 229/483 (47%), Positives = 292/483 (60%), Gaps = 39/483 (8%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F+FSSFP+L ++++S N L G IPPQIG LS L+YLDL  NQ SG IP EIG L  L +L
Sbjct: 107 FSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSINQFSGGIPPEIGLLTNLEVL 166

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIP 110
           +   NQL+GSIP EIGQL+ +  LAL  N            + NLA+ YL  N L  SIP
Sbjct: 167 HLVQNQLNGSIPHEIGQLTSLYELALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSIP 226

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             +GNL +L  +    N  +G IP + GNL +L  LYL++NS SG IP  IGNLKSL  L
Sbjct: 227 PEMGNLTNLVQLYSDTNNLTGPIPSTFGNLKHLTVLYLFNNSLSGPIPPEIGNLKSLQGL 286

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
            L  N L G IP+S  +LS LTL+ L+ N LSG +P  +GNLKSL  L L  NQL+G IP
Sbjct: 287 SLYGNNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIP 346

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
           +S+GNL++L  L+L +N L  + P+EI  L  L  LE+ TN L G +P  I     L   
Sbjct: 347 TSLGNLTNLEILFLRDNRLSGYFPQEIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERF 406

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------------------------- 325
            + +NHLSGPIPKS KN  ++ R L   N L+G V                         
Sbjct: 407 TVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNVSEVVGDCPNLEFIDLSYNRFHGELS 466

Query: 326 ----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL 381
                 P+L    I+ NNI+ SIP + G S  L +LDLSSN++VGEIP ++G L SL  L
Sbjct: 467 HNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLILLDLSSNHLVGEIPKKMGSLTSLLGL 526

Query: 382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441
           ILN NQLSG +P ELGSL  L+YLDLS N+L  SIP+ +G+ L L YL+LSNN+  H I 
Sbjct: 527 ILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIP 586

Query: 442 VEL 444
           V++
Sbjct: 587 VQM 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 226/483 (46%), Positives = 290/483 (60%), Gaps = 39/483 (8%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F+FSSFP+L + +++ N L G IPPQIG LS L+YLDL +NQ SG IP EIG L  L +L
Sbjct: 104 FSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQFSGRIPSEIGLLTNLEVL 163

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIP 110
           +   NQL+GSIP EIGQL  +  L+L  N            + NL N YL+ N L   IP
Sbjct: 164 HLVENQLNGSIPHEIGQLKSLCDLSLYTNKLEGTIPASLGNLSNLTNLYLDENKLSGLIP 223

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             +GNL  L  + L+ N  +G IP +LGNL +L  L LY+N  SG IP+ IGNLK L  L
Sbjct: 224 PEMGNLTKLVELCLNANNLTGPIPSTLGNLKSLTLLRLYNNQLSGPIPTEIGNLKHLRNL 283

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
            LS N L G IP+S G+LS L  + LF+N LSG +P  +GNL+SL  L +  NQL+G IP
Sbjct: 284 SLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEMGNLRSLVDLEISQNQLNGSIP 343

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
           + +GNL +L  LYL +N L S +P EI  L  L ELE+ TN LSG +P  I     L   
Sbjct: 344 TLLGNLINLEILYLRDNKLSSSIPPEIGKLHKLVELEIDTNQLSGFLPEGICQGGSLENF 403

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------------------------- 325
            + +N L GPIP+S KN  S+ R  L  N L+G +                         
Sbjct: 404 TVFDNFLIGPIPESLKNCPSLARARLQGNQLTGNISEAFGVCPNLYHINLSNNKFYGELS 463

Query: 326 ----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL 381
                  KL    I+ NNI+ SIP + G S +L VL+LSSN++VGEIP +LG + SL KL
Sbjct: 464 QNWGRCHKLQWLDIAGNNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKL 523

Query: 382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441
           ILN N+LSG +P ELGSL +L YLDLS N+L  SIP+ +GN L L YL+LSNN+  H I 
Sbjct: 524 ILNDNRLSGNIPPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIP 583

Query: 442 VEL 444
           V++
Sbjct: 584 VQM 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera]

 Score =  337 bits (864), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 219/468 (46%), Positives = 277/468 (59%), Gaps = 39/468 (8%)

Query: 16  FNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI 75
            N L G IPPQIG LS L+YLDL  NQ SG IP EIG L  L +L+   NQL+GSIP EI
Sbjct: 80  MNNLSGPIPPQIGLLSELKYLDLSINQFSGGIPSEIGLLTNLEVLHLVQNQLNGSIPHEI 139

Query: 76  GQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
           GQL+ +  LAL  N            + NLA  YL  N L +SIP  +GNL +L  +   
Sbjct: 140 GQLASLYELALYTNQLEGSIPASLGNLSNLAYLYLYENQLSDSIPPEMGNLTNLVEIYSD 199

Query: 126 QNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF 185
            N   G IP + GNL  L  LYL++N  SG IP  IGNLKSL  L L EN L G IP S 
Sbjct: 200 TNNLIGPIPSTFGNLKRLTVLYLFNNRLSGHIPPEIGNLKSLQGLSLYENNLSGPIPASL 259

Query: 186 GNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY 245
           G+LS LTL+ L+ N LSG +P  +GNLKSL  L L  NQL+G IP+S+GNL++L  L+L 
Sbjct: 260 GDLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLETLFLR 319

Query: 246 NNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
           +N L  ++P+EI  L  L  LE+ TN L G +P  I     L    + +NHLSGPIPKS 
Sbjct: 320 DNQLSGYIPQEIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSL 379

Query: 306 KNLTSVERVLLNQNNLSGKV-----------------------------NVPKLGTFIIS 336
           KN  ++ R L   N L+G +                               P+L    ++
Sbjct: 380 KNCKNLTRALFGGNQLTGNISEVVGDCPNLEYINVSYNSFHGELSHNWGRYPRLQRLEMA 439

Query: 337 VNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL 396
            NNI+ SIP + G S  L +LDLSSN++ GEIP ++G + SL KLILN NQLSG +P EL
Sbjct: 440 WNNITGSIPEDFGISTDLTLLDLSSNHLFGEIPKKMGSVTSLWKLILNDNQLSGNIPPEL 499

Query: 397 GSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           GSL +L YLDLS N+L  SIP+ +G+ L L YL+LSNN+  H I V++
Sbjct: 500 GSLADLGYLDLSANRLNGSIPEHLGDCLGLNYLNLSNNKLSHGIPVQM 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 213/476 (44%), Positives = 280/476 (58%), Gaps = 46/476 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F+FSSFP+L ++++  N L G IPPQIG LS L+YLDL +NQ SG IP EIG L  L +L
Sbjct: 135 FSFSSFPNLAYVDVCINNLSGPIPPQIGLLSKLKYLDLSTNQFSGGIPPEIGLLTNLEVL 194

Query: 61  YF---DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLN 117
           +      NQL GSIP  +G LS              NLA+ YL  N L  SIP  +GNL 
Sbjct: 195 HLLALYTNQLEGSIPASLGNLS--------------NLASLYLYENQLSGSIPPEMGNLA 240

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
           +L  +    N  +G IP + GNL  L  LYL++N  SG IP  IGNL SL  + L  N L
Sbjct: 241 NLVEIYSDTNNLTGLIPSTFGNLKRLTTLYLFNNQLSGHIPPEIGNLTSLQGISLYANNL 300

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
            G IP S G+LS LTL+ L+ N LSG +PP +GNLKSL  L L  NQL+G IP+S+GNL+
Sbjct: 301 SGPIPASLGDLSGLTLLHLYANQLSGPIPPEIGNLKSLVDLELSENQLNGSIPTSLGNLT 360

Query: 238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL 297
           +L  L+L +N L  + P+EI  L  L  LE+ TN LSG +P  I     L+   + +N L
Sbjct: 361 NLEILFLRDNHLSGYFPKEIGKLHKLVVLEIDTNRLSGSLPEGICQGGSLVRFTVSDNLL 420

Query: 298 SGPIPKSFKNLTSVERVLLNQNNLSGKV-----------------------------NVP 328
           SGPIPKS KN  ++ R L   N L+G +                               P
Sbjct: 421 SGPIPKSMKNCRNLTRALFGGNQLTGNISEVVGDCPNLEYIDLSYNRFHGELSHNWGRCP 480

Query: 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
           +L    ++ N+I+ SIP + G S  L +LDLSSN++VGEIP ++G L SL +L LN NQL
Sbjct: 481 QLQRLEMAGNDITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLELKLNDNQL 540

Query: 389 SGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           SG +P ELGSL  L +LDLS N+L  SI +++G  L L YL+LSNN+  ++I  ++
Sbjct: 541 SGSIPPELGSLFSLAHLDLSANRLNGSITENLGACLNLHYLNLSNNKLSNRIPAQM 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 211/472 (44%), Positives = 282/472 (59%), Gaps = 43/472 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           +FS+FP L  L+LS N L   IP +I  L  L +LDL SNQLSGVIP +IG L  L  L 
Sbjct: 103 SFSAFPDLEFLDLSCNSLSSTIPLEITQLPKLIFLDLSSNQLSGVIPPDIGLLTNLNTLR 162

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
              N+L GSIP  +G L+               LA  +L +N    SIP  +GNL +L  
Sbjct: 163 LSANRLDGSIPSSVGNLT--------------ELAWLHLYDNRFSGSIPSEMGNLKNLVE 208

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           + +  N  +GSIP + G+L+ L +L+LY+N  SG IP  +G+LKSL  L L  N L G I
Sbjct: 209 LFMDTNLLTGSIPSTFGSLTKLVQLFLYNNQLSGHIPQELGDLKSLTSLSLFGNNLSGPI 268

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           P S G L+SLT++ L+ N LSG++P  LGNL SLS L L  N+L+G IP+S+GNLS L  
Sbjct: 269 PASLGGLTSLTILHLYQNQLSGTIPKELGNLNSLSNLELSENKLTGSIPASLGNLSRLEL 328

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L+L NN L   +PE+I  L+ LS L+L +N L+G +P +I     L   ++ +N L GPI
Sbjct: 329 LFLKNNQLSGPIPEQIANLSKLSLLQLQSNQLTGYLPQNICQSKVLQNFSVNDNRLEGPI 388

Query: 302 PKSFKNLTSVERVLLNQNNLSGKVN-----------------------------VPKLGT 332
           PKS ++  S+ R+ L  N   G ++                              P LGT
Sbjct: 389 PKSMRDCKSLVRLHLEGNQFIGNISEDFGVYPYLQFVDIRYNKFHGEISSKWGMCPHLGT 448

Query: 333 FIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM 392
            +IS NNIS  IPPEIG++ +LQ LD SSN +VG IP +LGKL SL ++ L  NQLS G+
Sbjct: 449 LLISGNNISGIIPPEIGNAARLQGLDFSSNQLVGRIPKELGKLTSLVRVNLEDNQLSDGV 508

Query: 393 PLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           P E GSL +L+ LDLS N+   SIP +IGNL++L YL+LSNNQF  +I ++L
Sbjct: 509 PSEFGSLTDLESLDLSANRFNQSIPGNIGNLVKLNYLNLSNNQFSQEIPIQL 560

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484864|ref|XP_002273966.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 222/505 (43%), Positives = 283/505 (56%), Gaps = 63/505 (12%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
           F S P+LV L+L  N L G IP +IG L +L  L L +N LSG IP  IG+L  L  LY 
Sbjct: 118 FLSLPNLVTLDLYNNSLSGSIPQEIGLLRSLNNLKLSTNNLSGPIPPSIGNLRNLTTLYL 177

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIPLV 112
             N+L GSIP EIG L  +N L L  N            + NL   YL+ N L  SIP  
Sbjct: 178 HTNKLSGSIPQEIGLLRSLNDLELSANNLSGPIPPSIGNLRNLTTLYLHTNKLSGSIPQE 237

Query: 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           +G L SL+ ++LS N  +G IP S+GNL NL  LYL++N  SGSIP  IG L+SL  L+L
Sbjct: 238 IGLLRSLNDLELSTNNLNGPIPPSIGNLRNLTTLYLHTNKLSGSIPKEIGMLRSLNDLEL 297

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232
           S N L G IP S G L +LT + L NN LSGS+P  +G L+SL  L L  N LSG IP  
Sbjct: 298 STNNLNGPIPPSIGKLRNLTTLYLHNNKLSGSIPLEIGLLRSLFNLSLSTNNLSGPIPPF 357

Query: 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-------- 284
           IGNL +L  LYL NN     +P EI  L SL +L L TN LSG IP  I NL        
Sbjct: 358 IGNLRNLTKLYLDNNRFSGSIPREIGLLRSLHDLALATNKLSGPIPQEIDNLIHLKSLHL 417

Query: 285 -----TGLLLLNMC-----------ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV--- 325
                TG L   MC            NH +GPIP S +N TS+ RV L +N L G +   
Sbjct: 418 EENNFTGHLPQQMCLGGALENFTAMGNHFTGPIPMSLRNCTSLFRVRLERNQLEGNITEV 477

Query: 326 --------------------------NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDL 359
                                         L +  IS NN+S  IPP++G++ +L  LDL
Sbjct: 478 FGVYPNLNFMDLSSNNLYGELSHKWGQCGSLTSLNISHNNLSGIIPPQLGEAIQLHRLDL 537

Query: 360 SSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKS 419
           SSN+++G+IP +LGKL S+  L+L+ NQLSG +PLE+G+L  L++L L++N L  SIPK 
Sbjct: 538 SSNHLLGKIPRELGKLTSMFHLVLSNNQLSGNIPLEVGNLFNLEHLSLTSNNLSGSIPKQ 597

Query: 420 IGNLLRLCYLDLSNNQFGHKILVEL 444
           +G L +L +L+LS N+FG  I  E+
Sbjct: 598 LGMLSKLFFLNLSKNKFGESIPDEI 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327204|gb|AAX19025.1| Hcr2-p3 [Solanum pimpinellifolium]

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 206/459 (44%), Positives = 280/459 (61%), Gaps = 15/459 (3%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F FSS P+L +L+LS N + G IPP+IGNL+NL YL+L +NQ+SG IP +IG L +L+I+
Sbjct: 89  FPFSSLPYLENLDLSNNNISGTIPPEIGNLTNLVYLNLNTNQISGTIPPQIGSLAKLQII 148

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIP 110
               N L+G IP EIG L  +  L+L  N+           + NL+  +L  N L  SIP
Sbjct: 149 RIFNNHLNGFIPEEIGYLRSLTKLSLGINFLSGSIPASLGNMTNLSFLFLYENQLSGSIP 208

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             +G L+SL+ + L  N  +GSIP SLGNL+NL  L+LY N  SGSIP  IG L SL +L
Sbjct: 209 EEIGYLSSLTELHLGNNSLNGSIPASLGNLNNLSFLFLYENQLSGSIPEEIGYLSSLTEL 268

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
           DLS+N L GSIP S GNL++L+ + L+NN LS S+P  +G L SL+ L L  N L+G IP
Sbjct: 269 DLSDNALNGSIPASLGNLNNLSSLYLYNNQLSDSIPEEIGYLSSLTELNLGNNSLNGSIP 328

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
           +S+GNL++L +LYLY N L   +PEEI YL+SL+ L L  N L+G+IP S GN+  L  L
Sbjct: 329 ASLGNLNNLSSLYLYANQLSDSIPEEIGYLSSLTNLYLGNNSLNGLIPASFGNMRNLQAL 388

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIP 345
            + +N+L G IP    NLTS+E + +++NNL GKV     N+  L    +S N+ S  +P
Sbjct: 389 FLNDNNLIGEIPSYVCNLTSLELLYMSKNNLKGKVPQCLGNISDLRVLSMSSNSFSGDLP 448

Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYL 405
             I +   LQ+LD   NN+ G IP   G + SL    +  N+LSG +P        L  L
Sbjct: 449 SSISNLTSLQILDFGRNNLEGAIPQCFGNISSLEVFDMQNNKLSGTLPTNFSIGCALISL 508

Query: 406 DLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           +L  N+L   IP+S+ N  +L  LDL +NQ      V L
Sbjct: 509 NLHGNELADEIPRSLDNCKKLQVLDLGDNQLNDTFPVWL 547

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846642|ref|XP_002891202.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata] gi|297337044|gb|EFH67461.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 193/469 (41%), Positives = 275/469 (58%), Gaps = 43/469 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F FSS P+L +++ S N   G IPPQ GNL  L Y DL +N L+  IP E+G+L  L+ L
Sbjct: 99  FPFSSLPNLAYIDFSMNRFSGTIPPQFGNLFKLIYFDLSTNHLTREIPPELGNLQNLKGL 158

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
               N+L GSIP  IG+L  + VL L  NY              L   IP  LGN+  + 
Sbjct: 159 SLSNNKLAGSIPSSIGKLKNLTVLYLYKNY--------------LTGVIPPDLGNMEYMI 204

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
            ++LS N+ +GSIP SLGNL NL  LYL+ N  +G IP  +GN++S++ L LSEN+L GS
Sbjct: 205 DLELSHNKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNMESMISLALSENKLTGS 264

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR 240
           IP S GNL +LT++ L  N ++G +PP LGN++S+  L L  N L+G IPSS GN + L+
Sbjct: 265 IPSSLGNLKNLTVLYLHQNYITGVIPPELGNMESMIDLELSQNNLTGSIPSSFGNFTKLK 324

Query: 241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP 300
           +LYL  N L   +P  +   + L+EL+L  N+ SG +P +I     L  + + +NHL GP
Sbjct: 325 SLYLSYNHLSGAIPPGVANSSELTELQLAINNFSGFLPKNICKGGKLQFIALYDNHLKGP 384

Query: 301 IPKSFKNLTSVER------------------------VLLNQNNLSGKV-----NVPKLG 331
           IPKS ++  S+ R                        + L+ N  +G++       PKLG
Sbjct: 385 IPKSLRDCKSLIRAKFVGNKFVGNISEAFGVYPDLNFIDLSHNKFNGEISSNWQKSPKLG 444

Query: 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391
             I+S NNI+ +IPPEI +  +L  LDLS+NN+ GE+P  +G L +L++L LN NQLSG 
Sbjct: 445 ALIMSNNNITGAIPPEIWNMKQLGELDLSANNLSGELPEAIGNLTNLSRLRLNGNQLSGR 504

Query: 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
           +P  +  L  L+ LDLS+N+  S IP++  + L+L  ++LS N F  +I
Sbjct: 505 VPAGISFLTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSRNNFDGRI 553

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.982	0.390	0.408	2.3e-77
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.988	0.421	0.360	8.5e-68
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.934	0.364	0.393	1.2e-66
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.970	0.392	0.380	1.3e-66
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.968	0.383	0.375	3.9e-66
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.939	0.379	0.383	9.5e-66
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.930	0.373	0.379	2e-64
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.973	0.381	0.38	4.8e-64
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.961	0.392	0.382	1.1e-63
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.939	0.368	0.376	3.5e-63

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 2.3e-77, P = 2.3e-77
 Identities = 187/458 (40%), Positives = 261/458 (56%)

Query:     1 FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
             F F S  +L +++LS N+L G IPPQ GNLS L Y DL +N L+G I   +G+L  L +L
Sbjct:    96 FPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVL 155

Query:    61 YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXX----------XXXIP 110
             Y   N L   IP E+G +  +  LAL  N                             IP
Sbjct:   156 YLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIP 215

Query:   111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
               LGN+ S++ + LSQN+ +GSIP +LGNL NL  LYLY N  +G IP  IGN++S+  L
Sbjct:   216 PELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNL 275

Query:   171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
              LS+N+L GSIP S GNL +LTL+SLF N L+G +PP LGN++S+  L L  N+L+G IP
Sbjct:   276 ALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIP 335

Query:   231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
             SS+GNL +L  LYLY N L   +P E+  + S+ +L+L  N L+G IP S GNL  L  L
Sbjct:   336 SSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYL 395

Query:   291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIP 345
              +  N+L+G IP+   N+ S+  + L+QN L+G V     N  KL +  + VN++S +IP
Sbjct:   396 YLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIP 455

Query:   346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG---SLIEL 402
             P + +S  L  L L +NN  G  P  + K   L  + L+ N L G +P  L    SLI  
Sbjct:   456 PGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRA 515

Query:   403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
             ++L    NK    I ++ G    L ++D S+N+F  +I
Sbjct:   516 RFLG---NKFTGDIFEAFGIYPDLNFIDFSHNKFHGEI 550

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 8.5e-68, P = 8.5e-68
 Identities = 164/455 (36%), Positives = 248/455 (54%)

Query:     1 FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
             F FSS P+L  ++LS N   G I P  G  S L+Y DL  NQL G IP E+G L+ L  L
Sbjct:   112 FPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTL 171

Query:    61 YFDVNQLHGSIPLEIGQLSLINVLALCHNYF----------VCXXXXXXXXXXXXXXXIP 110
             +   N+L+GSIP EIG+L+ +  +A+  N            +                IP
Sbjct:   172 HLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIP 231

Query:   111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
               +GNL +L  + L +N  +G IP S GNL N+  L ++ N  SG IP  IGN+ +L  L
Sbjct:   232 SEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTL 291

Query:   171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
              L  N+L G IP + GN+ +L ++ L+ N L+GS+PP LG ++S+  L +  N+L+G +P
Sbjct:   292 SLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVP 351

Query:   231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
              S G L++L  L+L +N L   +P  I   T L+ L+L TN+ +G +P +I     L  L
Sbjct:   352 DSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENL 411

Query:   291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-----VPKLGTFIISVNNISESIP 345
              + +NH  GP+PKS ++  S+ RV    N+ SG ++      P L    +S NN    + 
Sbjct:   412 TLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLS 471

Query:   346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYL 405
                  S KL    LS+N+I G IP ++  +  L++L L+ N+++G +P  + ++  +  L
Sbjct:   472 ANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKL 531

Query:   406 DLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
              L+ N+L   IP  I  L  L YLDLS+N+F  +I
Sbjct:   532 QLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEI 566

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.2e-66, P = 1.2e-66
 Identities = 174/442 (39%), Positives = 248/442 (56%)

Query:    12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLR-ILYFDVNQLHGS 70
             L+LS N L G IP  +  L NL+ L L SNQL+G IP +I   ++L+ ++ FD N L GS
Sbjct:   134 LDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFD-NLLTGS 192

Query:    71 IPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFS 130
             IP E+G+LS + V+ +  N  +                IP  +G+ ++L+ + L++   S
Sbjct:   193 IPTELGKLSGLEVIRIGGNKEI-------------SGQIPSEIGDCSNLTVLGLAETSVS 239

Query:   131 GSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSS 190
             G++P SLG L  L+ L +Y+   SG IPS +GN   L+ L L EN L GSIP   G L+ 
Sbjct:   240 GNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTK 299

Query:   191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLY 250
             L  + L+ NSL G +P  +GN  +L  + L +N LSG IPSSIG LS L    + +N   
Sbjct:   300 LEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFS 359

Query:   251 SFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTS 310
               +P  I   +SL +L+L  N +SG+IP  +G LT L L     N L G IP    + T 
Sbjct:   360 GSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTD 419

Query:   311 VERVLLNQNNLSGKV--------NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
             ++ + L++N+L+G +        N+ KL   +IS N++S  IP EIG+   L  L L  N
Sbjct:   420 LQALDLSRNSLTGTIPSGLFMLRNLTKL--LLIS-NSLSGFIPQEIGNCSSLVRLRLGFN 476

Query:   363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422
              I GEIP  +G L  +N L  + N+L G +P E+GS  ELQ +DLS N L+ S+P  + +
Sbjct:   477 RITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSS 536

Query:   423 LLRLCYLDLSNNQFGHKILVEL 444
             L  L  LD+S NQF  KI   L
Sbjct:   537 LSGLQVLDVSANQFSGKIPASL 558

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 170/447 (38%), Positives = 241/447 (53%)

Query:     9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
             L  L L  N LFG IP QIGNLS+LQ L + SN L+GVIP  +  L QLRI+    N   
Sbjct:   141 LKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFS 200

Query:    69 GSIPLEIGQLSLINVLALCHNYF----------VCXXXXXXXXXXXXXXXIPLVLGNLNS 118
             G IP EI     + VL L  N            +                IP  +GN++ 
Sbjct:   201 GVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISR 260

Query:   119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
             L  + L +N F+GSIP  +G L+ + +LYLY+N  +G IP  IGNL    ++D SENQL 
Sbjct:   261 LEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLT 320

Query:   179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
             G IP  FG++ +L L+ LF N L G +P  LG L  L  L L IN+L+G IP  +  L  
Sbjct:   321 GFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPY 380

Query:   239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298
             L  L L++N L   +P  I + ++ S L++  N LSG IP        L+LL++  N LS
Sbjct:   381 LVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLS 440

Query:   299 GPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPK 353
             G IP+  K   S+ +++L  N L+G +     N+  L    +  N +S +I  ++G    
Sbjct:   441 GNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKN 500

Query:   354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413
             L+ L L++NN  GEIP ++G L  +    ++ NQL+G +P ELGS + +Q LDLS NK  
Sbjct:   501 LERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFS 560

Query:   414 SSIPKSIGNLLRLCYLDLSNNQFGHKI 440
               I + +G L+ L  L LS+N+   +I
Sbjct:   561 GYIAQELGQLVYLEILRLSDNRLTGEI 587

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 3.9e-66, P = 3.9e-66
 Identities = 169/450 (37%), Positives = 246/450 (54%)

Query:    12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
             L+LS   L GI+ P IG L NL YL+L  N L+G IP EIG+ ++L +++ + NQ  GSI
Sbjct:    90 LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149

Query:    72 PLEIGQLSLINVLALCHNYF----------VCXXXXXXXXXXXXXXXIPLVLGNLNSLST 121
             P+EI +LS +    +C+N            +                +P  LGNLN L+T
Sbjct:   150 PVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209

Query:   122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
                 QN FSG+IP  +G   NL  L L  N  SG +P  IG L  L ++ L +N+  G I
Sbjct:   210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269

Query:   182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
             P   GNL+SL  ++L+ NSL G +P  +GN+KSL  L L+ NQL+G IP  +G LS +  
Sbjct:   270 PKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME 329

Query:   242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
             +    N L   +P E+  ++ L  L L  N L+G+IP+ +  L  L  L++  N L+GPI
Sbjct:   330 IDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPI 389

Query:   302 PKSFKNLTSVERVLLNQNNLSGKVNVPK-LGTF----II--SVNNISESIPPEIGDSPKL 354
             P  F+NLTS+ ++ L  N+LSG +  P+ LG +    ++  S N +S  IPP I     L
Sbjct:   390 PPGFQNLTSMRQLQLFHNSLSGVI--PQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNL 447

Query:   355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
              +L+L SN I G IP  + +  SL +L +  N+L+G  P EL  L+ L  ++L  N+   
Sbjct:   448 ILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSG 507

Query:   415 SIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
              +P  IG   +L  L L+ NQF   +  E+
Sbjct:   508 PLPPEIGTCQKLQRLHLAANQFSSNLPNEI 537

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 9.5e-66, P = 9.5e-66
 Identities = 169/441 (38%), Positives = 244/441 (55%)

Query:     3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
             +SS P ++ LNLS  +L G + P IG L +L+ LDL  N LSG IP EIG+ + L IL  
Sbjct:    69 YSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKL 128

Query:    63 DVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTM 122
             + NQ  G IP+EIG+L  +  L + +N                   +P+ +GNL SLS +
Sbjct:   129 NNNQFDGEIPVEIGKLVSLENLIIYNNRI--------------SGSLPVEIGNLLSLSQL 174

Query:   123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
                 N  SG +P S+GNL  L       N  SGS+PS IG  +SL+ L L++NQL G +P
Sbjct:   175 VTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELP 234

Query:   183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
                G L  L+ + L+ N  SG +P  + N  SL  L L+ NQL G IP  +G+L SL  L
Sbjct:   235 KEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFL 294

Query:   243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
             YLY NGL   +P EI  L+   E++   N L+G IP  +GN+ GL LL + EN L+G IP
Sbjct:   295 YLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIP 354

Query:   303 KSFKNLTSVERVLLNQNNLSGKVNVP---KLGTFIISV--NNISESIPPEIGDSPKLQVL 357
                  L ++ ++ L+ N L+G + +      G F++ +  N++S +IPP++G    L VL
Sbjct:   355 VELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVL 414

Query:   358 DLSSNNIVGEIPVQLGKLFSLNKLILNL--NQLSGGMPLELGSLIELQYLDLSTNKLKSS 415
             D+S N++ G IP  L  L S N +ILNL  N LSG +P  + +   L  L L+ N L   
Sbjct:   415 DMSDNHLSGRIPSYLC-LHS-NMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGR 472

Query:   416 IPKSIGNLLRLCYLDLSNNQF 436
              P ++   + +  ++L  N+F
Sbjct:   473 FPSNLCKQVNVTAIELGQNRF 493

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 664 (238.8 bits), Expect = 2.0e-64, P = 2.0e-64
 Identities = 166/437 (37%), Positives = 235/437 (53%)

Query:     8 HLVHLN---LSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV 64
             HL HL    LS N  FG IP Q+GN S L+++DL SN  +G IP  +G L  LR L    
Sbjct:    90 HLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFF 149

Query:    65 NQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDL 124
             N L G  P E    SL+++  L   YF                 IP  +GN++ L+T+ L
Sbjct:   150 NSLIGPFP-E----SLLSIPHLETVYFT---------GNGLNGSIPSNIGNMSELTTLWL 195

Query:   125 SQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS 184
               NQFSG +P SLGN++ L +LYL  N+  G++P  + NL++L+ LD+  N L+G+IPL 
Sbjct:   196 DDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLD 255

Query:   185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL 244
             F +   +  +SL NN  +G LPP LGN  SL   G     LSG IPS  G L+ L  LYL
Sbjct:   256 FVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYL 315

Query:   245 YNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS 304
               N     +P E+    S+ +L+L  N L G IP  +G L+ L  L++  N+LSG +P S
Sbjct:   316 AGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLS 375

Query:   305 FKNLTSVERVLLNQNNLSGKVNVP-----KLGTFIISVNNISESIPPEIGDSPKLQVLDL 359
                + S++ + L QNNLSG++ V      +L +  +  N+ +  IP ++G +  L+VLDL
Sbjct:   376 IWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLDL 435

Query:   360 SSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKS 419
             + N   G IP  L     L +L+L  N L G +P +LG    L+ L L  N L+  +P  
Sbjct:   436 TRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDF 495

Query:   420 IGNLLRLCYLDLSNNQF 436
             +     L + DLS N F
Sbjct:   496 VEKQ-NLLFFDLSGNNF 511

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 4.8e-64, P = 4.8e-64
 Identities = 171/450 (38%), Positives = 229/450 (50%)

Query:    12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
             LNLS+N L G IP  +GNL +LQYL L  N L G +P  I + + L  L    N++ G I
Sbjct:   191 LNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVI 250

Query:    72 PLEIGQLSLINVLALCHNYF--------VCXXXXXXXXXXXXXXXI---PLVLGNLNS-L 119
             P   G L  + VL+L +N F         C                   P    N  + L
Sbjct:   251 PAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGL 310

Query:   120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
               +DL +N+ SG  PL L N+ +L  L +  N FSG IP  IGNLK L +L L+ N L G
Sbjct:   311 QVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTG 370

Query:   180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
              IP+      SL ++    NSL G +P  LG +K+L  L L  N  SG +PSS+ NL  L
Sbjct:   371 EIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQL 430

Query:   240 RALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG 299
               L L  N L    P E+  LTSLSEL+L  N  SG +P SI NL+ L  LN+  N  SG
Sbjct:   431 ERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSG 490

Query:   300 PIPKSFKNLTSVERVLLNQNNLSGKVNV-----PKLGTFIISVNNISESIPPEIGDSPKL 354
              IP S  NL  +  + L++ N+SG+V V     P +    +  NN S  +P        L
Sbjct:   491 EIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSL 550

Query:   355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
             + ++LSSN+  GEIP   G L  L  L L+ N +SG +P E+G+   L+ L+L +N+L  
Sbjct:   551 RYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMG 610

Query:   415 SIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
              IP  +  L RL  LDL  N    +I  E+
Sbjct:   611 HIPADLSRLPRLKVLDLGQNNLSGEIPPEI 640

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 173/452 (38%), Positives = 237/452 (52%)

Query:    12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQ-LHGS 70
             L+L+ N L G+IP ++GNL NL  L L  N+L+G IP  IG L  L I     N+ L G 
Sbjct:   149 LSLNTNNLEGVIPSELGNLVNLIELTLFDNKLAGEIPRTIGELKNLEIFRAGGNKNLRGE 208

Query:    71 IPLEIGQLSLINVLALCHNYF----------VCXXXXXXXXXXXXXXXIPLVLGNLNSLS 120
             +P EIG    +  L L               +                IP  +GN   L 
Sbjct:   209 LPWEIGNCESLVTLGLAETSLSGRLPASIGNLKKVQTIALYTSLLSGPIPDEIGNCTELQ 268

Query:   121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
              + L QN  SGSIP+S+G L  L  L L+ N+  G IP+ +G    L  +DLSEN L G+
Sbjct:   269 NLYLYQNSISGSIPVSMGRLKKLQSLLLWQNNLVGKIPTELGTCPELFLVDLSENLLTGN 328

Query:   181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR 240
             IP SFGNL +L  + L  N LSG++P  L N   L+ L +  NQ+SG IP  IG L+SL 
Sbjct:   329 IPRSFGNLPNLQELQLSVNQLSGTIPEELANCTKLTHLEIDNNQISGEIPPLIGKLTSLT 388

Query:   241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI---GNLTGLLLLNMCENHL 297
               + + N L   +PE +     L  ++L  N+LSG IP+ I    NLT LLLL+   N+L
Sbjct:   389 MFFAWQNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLLS---NYL 445

Query:   298 SGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSP 352
             SG IP    N T++ R+ LN N L+G +     N+  L    IS N +  +IPPEI    
Sbjct:   446 SGFIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENRLIGNIPPEISGCT 505

Query:   353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
              L+ +DL SN + G +P  L K  SL  + L+ N L+G +P  +GSL EL  L+L+ N+ 
Sbjct:   506 SLEFVDLHSNGLTGGLPGTLPK--SLQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRF 563

Query:   413 KSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
                IP+ I +   L  L+L +N F  +I  EL
Sbjct:   564 SGEIPREISSCRSLQLLNLGDNGFTGEIPNEL 595

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 3.5e-63, P = 3.5e-63
 Identities = 165/438 (37%), Positives = 242/438 (55%)

Query:     9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL-YFDVNQL 67
             L+ ++LS N L G IP  +G L NLQ L L SN L+G IP E+G    L+ L  FD N L
Sbjct:   132 LIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFD-NYL 190

Query:    68 HGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQN 127
               ++PLE+G++S +  +    N                   IP  +GN  +L  + L+  
Sbjct:   191 SENLPLELGKISTLESIRAGGN-------------SELSGKIPEEIGNCRNLKVLGLAAT 237

Query:   128 QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN 187
             + SGS+P+SLG LS L  L +YS   SG IP  +GN   L+ L L +N L G++P   G 
Sbjct:   238 KISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGK 297

Query:   188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
             L +L  M L+ N+L G +P  +G +KSL+A+ L +N  SG IP S GNLS+L+ L L +N
Sbjct:   298 LQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSN 357

Query:   248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
              +   +P  +   T L + ++  N +SG+IP  IG L  L +    +N L G IP     
Sbjct:   358 NITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAG 417

Query:   308 LTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
               +++ + L+QN L+G +      +  L   ++  N IS  IP EIG+   L  L L +N
Sbjct:   418 CQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNN 477

Query:   363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422
              I GEIP  +G L +L+ L L+ N LSG +PLE+ +  +LQ L+LS N L+  +P S+ +
Sbjct:   478 RITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSS 537

Query:   423 LLRLCYLDLSNNQFGHKI 440
             L +L  LD+S+N    KI
Sbjct:   538 LTKLQVLDVSSNDLTGKI 555

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-75
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-69
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  253 bits (648), Expect = 2e-75
 Identities = 174/441 (39%), Positives = 239/441 (54%), Gaps = 20/441 (4%)

Query: 5   SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV 64
           S P+L  L+LS N+L G IP  IG+ S+L+ LDLG N L G IP  + +L  L  L    
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 65  NQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDL 124
           NQL G IP E+GQ+               +L   YL  N+L   IP  +G L SL+ +DL
Sbjct: 198 NQLVGQIPRELGQMK--------------SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 125 SQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS 184
             N  +G IP SLGNL NL  L+LY N  SG IP  I +L+ L+ LDLS+N L G IP  
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL 244
              L +L ++ LF+N+ +G +P  L +L  L  L L  N+ SG IP ++G  ++L  L L
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363

Query: 245 YNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS 304
             N L   +PE +    +L +L L +N L G IP S+G    L  + + +N  SG +P  
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Query: 305 FKNLTSVERVLLNQNNLSGKVN-----VPKLGTFIISVNNISESIPPEIGDSPKLQVLDL 359
           F  L  V  + ++ NNL G++N     +P L    ++ N     +P   G S +L+ LDL
Sbjct: 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDL 482

Query: 360 SSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKS 419
           S N   G +P +LG L  L +L L+ N+LSG +P EL S  +L  LDLS N+L   IP S
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Query: 420 IGNLLRLCYLDLSNNQFGHKI 440
              +  L  LDLS NQ   +I
Sbjct: 543 FSEMPVLSQLDLSQNQLSGEI 563

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  237 bits (605), Expect = 2e-69
 Identities = 175/469 (37%), Positives = 231/469 (49%), Gaps = 47/469 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLS-NLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           A    P++  +NLS N L G IP  I   S +L+YL+L +N  +G IP   G +  L  L
Sbjct: 88  AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
               N L G IP +IG  S + VL L                N L   IP  L NL SL 
Sbjct: 146 DLSNNMLSGEIPNDIGSFSSLKVLDL--------------GGNVLVGKIPNSLTNLTSLE 191

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
            + L+ NQ  G IP  LG + +L  +YL  N+ SG IP  IG L SL  LDL  N L G 
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR 240
           IP S GNL +L  + L+ N LSG +PP + +L+ L +L L  N LSG IP  +  L +L 
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG-------------NLTGL 287
            L+L++N     +P  +  L  L  L+L +N  SG IP ++G             NLTG 
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 288 LLLNMCE-----------NHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLG 331
           +   +C            N L G IPKS     S+ RV L  N+ SG++      +P + 
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431

Query: 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391
              IS NN+   I     D P LQ+L L+ N   G +P   G    L  L L+ NQ SG 
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGA 490

Query: 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
           +P +LGSL EL  L LS NKL   IP  + +  +L  LDLS+NQ   +I
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  225 bits (574), Expect = 3e-65
 Identities = 154/428 (35%), Positives = 232/428 (54%), Gaps = 16/428 (3%)

Query: 5   SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV 64
           SF  L  L+L  N+L G IP  + NL++L++L L SNQL G IP E+G +  L+ +Y   
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 65  NQLHGSIPLEIGQLSLINVLALCHNYF----------VCNLANFYLNNNSLFNSIPLVLG 114
           N L G IP EIG L+ +N L L +N            + NL   +L  N L   IP  + 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
           +L  L ++DLS N  SG IP  +  L NL+ L+L+SN+F+G IP  + +L  L  L L  
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 234
           N+  G IP + G  ++LT++ L  N+L+G +P  L +  +L  L L  N L G IP S+G
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
              SLR + L +N     +P E   L  +  L++  N+L G I     ++  L +L++  
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIG 349
           N   G +P SF +   +E + L++N  SG V     ++ +L    +S N +S  IP E+ 
Sbjct: 462 NKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409
              KL  LDLS N + G+IP    ++  L++L L+ NQLSG +P  LG++  L  +++S 
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580

Query: 410 NKLKSSIP 417
           N L  S+P
Sbjct: 581 NHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  191 bits (487), Expect = 3e-53
 Identities = 145/362 (40%), Positives = 196/362 (54%), Gaps = 19/362 (5%)

Query: 92  VCNLANFYLNNNSLFNSIPLVLGNLNS-----------LSTMDLSQNQFSGSIPLSLGNL 140
           VC       NN+S   SI L   N++            + T++LS NQ SG IP  +   
Sbjct: 57  VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT 116

Query: 141 S-NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199
           S +L  L L +N+F+GSIP   G++ +L  LDLS N L G IP   G+ SSL ++ L  N
Sbjct: 117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Query: 200 SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRY 259
            L G +P  L NL SL  L L  NQL G IP  +G + SL+ +YL  N L   +P EI  
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 260 LTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319
           LTSL+ L+L  N+L+G IP S+GNL  L  L + +N LSGPIP S  +L  +  + L+ N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 320 NLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGK 374
           +LSG++      +  L    +  NN +  IP  +   P+LQVL L SN   GEIP  LGK
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 375 LFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
             +L  L L+ N L+G +P  L S   L  L L +N L+  IPKS+G    L  + L +N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 435 QF 436
            F
Sbjct: 415 SF 416

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  155 bits (392), Expect = 1e-40
 Identities = 127/344 (36%), Positives = 172/344 (50%), Gaps = 16/344 (4%)

Query: 4   SSFPHLVHLNLSF---NILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           SS  +L +L   F   N L G IPP I +L  L  LDL  N LSG IP  +  L  L IL
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC----------NLANFYLNNNSLFNSIP 110
           +   N   G IP+ +  L  + VL L  N F            NL    L+ N+L   IP
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
             L +  +L  + L  N   G IP SLG   +L ++ L  NSFSG +PS    L  +  L
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
           D+S N L G I     ++ SL ++SL  N   G LP   G+ K L  L L  NQ SG +P
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVP 492

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
             +G+LS L  L L  N L   +P+E+     L  L+L  N LSG IP S   +  L  L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFI 334
           ++ +N LSG IPK+  N+ S+ +V ++ N+L G  ++P  G F+
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG--SLPSTGAFL 594

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  100 bits (251), Expect = 1e-22
 Identities = 71/186 (38%), Positives = 98/186 (52%), Gaps = 4/186 (2%)

Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVL-LNQNNL 321
           +  ++L   ++SG I  +I  L  +  +N+  N LSGPIP      +S  R L L+ NN 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 322 SGKV---NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSL 378
           +G +   ++P L T  +S N +S  IP +IG    L+VLDL  N +VG+IP  L  L SL
Sbjct: 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 379 NKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
             L L  NQL G +P ELG +  L+++ L  N L   IP  IG L  L +LDL  N    
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Query: 439 KILVEL 444
            I   L
Sbjct: 251 PIPSSL 256

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
           +D L L +    G IP+ I  L+ L  ++LS N + G+IP S G+++SL ++ L  NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS 262
           GS+P  LG L SL  L L+ N LSG +P+++G     RA + + +            L  
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN---------AGLCG 530

Query: 263 LSELELCTNHLS--GVIPHSIGNLTGLLLLNMC 293
           +  L  C  HLS    I  + G     L L +C
Sbjct: 531 IPGLRACGPHLSVGAKIGIAFGVSVAFLFLVIC 563

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query: 241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP 300
            L L N GL  F+P +I  L  L  + L  N + G IP S+G++T L +L++  N  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 301 IPKSFKNLTSVERVLLNQNNLSGKV 325
           IP+S   LTS+  + LN N+LSG+V
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 38/92 (41%), Positives = 52/92 (56%)

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           +  + L      G IP  +  L +L  + L  NS  G+IP  +G++ SL  LDLS N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILG 210
           GSIP S G L+SL +++L  NSLSG +P  LG
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 37/87 (42%), Positives = 54/87 (62%)

Query: 100 LNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS 159
           L+N  L   IP  +  L  L +++LS N   G+IP SLG++++L+ L L  NSF+GSIP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 160 IIGNLKSLLQLDLSENQLIGSIPLSFG 186
            +G L SL  L+L+ N L G +P + G
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 15/99 (15%)

Query: 65  NQ-LHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMD 123
           NQ L G IP +I +L               +L +  L+ NS+  +IP  LG++ SL  +D
Sbjct: 427 NQGLRGFIPNDISKLR--------------HLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIG 162
           LS N F+GSIP SLG L++L  L L  NS SG +P+ +G
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
           S   HL  +NLS N + G IPP +G++++L+ LDL  N  +G IP  +G L  LRIL  +
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 64  VNQLHGSIPLEIGQLSL 80
            N L G +P  +G   L
Sbjct: 499 GNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 7e-12
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           +  LGL    L G IP+ I  L  L+++ L  N +   +P  +  +TSL  L+L  N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKS 304
           G IP S+G LT L +LN+  N LSG +P +
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 33/71 (46%), Positives = 42/71 (59%)

Query: 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
            L +  +S N+I  +IPP +G    L+VLDLS N+  G IP  LG+L SL  L LN N L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 389 SGGMPLELGSL 399
           SG +P  LG  
Sbjct: 503 SGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 9e-11
 Identities = 32/81 (39%), Positives = 46/81 (56%)

Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQ 403
           IP +I     LQ ++LS N+I G IP  LG + SL  L L+ N  +G +P  LG L  L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 404 YLDLSTNKLKSSIPKSIGNLL 424
            L+L+ N L   +P ++G  L
Sbjct: 494 ILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 23/142 (16%)

Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP---------------- 369
           N  ++ +  +S  NIS  I   I   P +Q ++LS+N + G IP                
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 370 -------VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422
                  +  G + +L  L L+ N LSG +P ++GS   L+ LDL  N L   IP S+ N
Sbjct: 127 NNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 423 LLRLCYLDLSNNQFGHKILVEL 444
           L  L +L L++NQ   +I  EL
Sbjct: 187 LTSLEFLTLASNQLVGQIPREL 208

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 14/103 (13%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           L L    L G IP  I  L +LQ ++L  N + G IP  +G +  L +L    N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 72  PLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLG 114
           P  +GQL+ + +L               LN NSL   +P  LG
Sbjct: 483 PESLGQLTSLRILN--------------LNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 31/78 (39%), Positives = 44/78 (56%)

Query: 357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI 416
           L L +  + G IP  + KL  L  + L+ N + G +P  LGS+  L+ LDLS N    SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 417 PKSIGNLLRLCYLDLSNN 434
           P+S+G L  L  L+L+ N
Sbjct: 483 PESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 82/240 (34%), Positives = 109/240 (45%), Gaps = 28/240 (11%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
            L +  LN N L ++I  +L  L +L+++DL  N  +   PL     SNL +L L  N  
Sbjct: 94  PLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 154 SGSIPSIIGNLKSLLQLDLSENQL----------------------IGSIPLSFGNLSSL 191
             S+PS + NL +L  LDLS N L                      I  +P     LS+L
Sbjct: 153 E-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL 211

Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS 251
             + L NNS+   L   L NLK+LS L L  N+L   +P SIGNLS+L  L L NN + S
Sbjct: 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS 269

Query: 252 FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV 311
                +  LT+L EL+L  N LS  +P     L  L LL      L     K    L + 
Sbjct: 270 I--SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNN 327

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 84/282 (29%), Positives = 124/282 (43%), Gaps = 28/282 (9%)

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS 166
             +P  L  L SL  +  S    S     +L NL  L  L L  N    +I S +  L +
Sbjct: 60  LLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTN 117

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
           L  LDL  N +    PL     S+L  + L +N +  SLP  L NL +L  L L  N LS
Sbjct: 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176

Query: 227 GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG 286
             +P  + NLS+L  L L  N +   +P EI  L++L EL+L  N +  ++  S+ NL  
Sbjct: 177 -DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLS-SLSNLKN 233

Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP 346
           L  L    N+    +P+S  NL+++E + L+ N +S                        
Sbjct: 234 LSGLE-LSNNKLEDLPESIGNLSNLETLDLSNNQIS---------------------SIS 271

Query: 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
            +G    L+ LDLS N++   +P+    L  L  L+  L  L
Sbjct: 272 SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 383 LNLNQ--LSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
           L L+   L G +P ++  L  LQ ++LS N ++ +IP S+G++  L  LDLS N F   I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIG 52
           +  S   L  L+LS+N   G IP  +G L++L+ L+L  N LSG +P  +G
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 21/207 (10%)

Query: 27  IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86
           +  L+NL  LDL +N ++ + PL     + L+ L    N++  S+P  +  L        
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNL-------- 162

Query: 87  CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKL 146
                  NL N  L+ N L + +P +L NL++L+ +DLS N+ S  +P  +  LS L++L
Sbjct: 163 ------PNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL 214

Query: 147 YLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLP 206
            L +NS    + S + NLK+L  L+LS N+L   +P S GNLS+L  + L NN +S    
Sbjct: 215 DLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS--I 270

Query: 207 PILGNLKSLSALGLHINQLSGVIPSSI 233
             LG+L +L  L L  N LS  +P   
Sbjct: 271 SSLGSLTNLRELDLSGNSLSNALPLIA 297

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 8  HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
          +L  L+LS N L  I       L NL+ LDL  N L+ + P     L  LR L    N L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 62/256 (24%), Positives = 100/256 (39%), Gaps = 67/256 (26%)

Query: 191 LTLMSLFNNSLSGSLPPIL-GNLKSLSALGLHINQLSGVIPSSIGNL------------- 236
           +T + L NN L  SLP  L GN+K+L A    +  +   +P +I  +             
Sbjct: 201 ITTLILDNNELK-SLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPER 259

Query: 237 --SSLRALYLYNNGLYSF---VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLN 291
             S+L++L L++N +      +PEE+RYL       +  N +  +  H    +T L + +
Sbjct: 260 LPSALQSLDLFHNKISCLPENLPEELRYL------SVYDNSIRTLPAHLPSGITHLNVQS 313

Query: 292 MCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS 351
                L   +P   K L + E  L                       ++  S+PPE    
Sbjct: 314 NSLTALPETLPPGLKTLEAGENAL----------------------TSLPASLPPE---- 347

Query: 352 PKLQVLDLSSNNIV---GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
             LQVLD+S N I      +P  +  L      + NL       P  L +   LQ +  S
Sbjct: 348 --LQVLDVSKNQITVLPETLPPTITTLDVSRNALTNL-------PENLPA--ALQIMQAS 396

Query: 409 TNKLKSSIPKSIGNLL 424
            N L   +P+S+ +  
Sbjct: 397 RNNL-VRLPESLPHFR 411

Length = 754

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 40/226 (17%)

Query: 165 KSLLQLDLSENQLI------GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL 218
            SL +L LS N+         S+         L  + L +N+L      +L +L   S+L
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 219 G---LHINQLSGVIPSSIG-----NLSSLRALYLYNNGLYSFVPEEI----RYLTSLSEL 266
               L+ N L       +         +L  L L  N L     E +    R    L EL
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 267 ELCTNHLSG----VIPHSIGNLTGLLLLNMCENHL----SGPIPKSFKNLTSVERVLLNQ 318
            L  N +       +   +     L +L++  N L    +  + ++  +L S+E + L  
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 319 NNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI 364
           NNL+                  +      +  +  L  L LS N+I
Sbjct: 231 NNLTDA--------------GAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PLN03150	623	hypothetical protein; Provisional	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
PLN03150	623	hypothetical protein; Provisional	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.81
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.51
KOG4341	483	consensus F-box protein containing LRR [General fu	98.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.12
KOG4341	483	consensus F-box protein containing LRR [General fu	98.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.77
PRK15386	426	type III secretion protein GogB; Provisional	97.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.72
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.49
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.83
KOG4308	478	consensus LRR-containing protein [Function unknown	93.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.06
smart00370	26	LRR Leucine-rich repeats, outliers.	87.06
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.88
KOG4308	478	consensus LRR-containing protein [Function unknown	86.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.2e-48  Score=403.23  Aligned_cols=438  Identities=37%  Similarity=0.563  Sum_probs=306.0

Q ss_pred             cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967            4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV   83 (445)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   83 (445)
                      ..+++||+|++++|.+....+.  ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++
T Consensus       115 ~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             ccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            4677888888888777654442  44667777777777776667777777777777777777776667777777777777


Q ss_pred             EEecCcccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCcc
Q 039967           84 LALCHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF  153 (445)
Q Consensus        84 l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  153 (445)
                      +++++|.+.          .+|+++++++|.+....|..+.++++|++|++++|.+....|..+..+++|++|.+.+|.+
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            777766542          5667777777777666777777777777777777776666666677777777777777766


Q ss_pred             ccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccc
Q 039967          154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI  233 (445)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  233 (445)
                      ....|..+.++++|+.|++++|.+....|..+..+++|+.|++.+|.+....|..+..+++|+.+++++|.+....+..+
T Consensus       273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  352 (968)
T PLN00113        273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL  352 (968)
T ss_pred             eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence            65566666666777777777776665666666666667777766666665566666666666666666666654555555


Q ss_pred             cCCCcccEEEeeCccccccChhh------------------------hcccccccEEecccCccCCCccccccccCCccE
Q 039967          234 GNLSSLRALYLYNNGLYSFVPEE------------------------IRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL  289 (445)
Q Consensus       234 ~~~~~L~~L~l~~~~~~~~~~~~------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  289 (445)
                      ..+++|+.+++++|.+....+..                        +..+++|+.|++.+|.+....+..+..++.|+.
T Consensus       353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  432 (968)
T PLN00113        353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF  432 (968)
T ss_pred             hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence            55566666666665554434444                        444455555555555554444444555555556


Q ss_pred             EEcCCCcccCCCCccccccCccceeeccCccccccc----cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc
Q 039967          290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV  365 (445)
Q Consensus       290 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  365 (445)
                      +++++|.+.+..+..+..+++|+.|++++|.+.+..    ..++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus       433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  512 (968)
T PLN00113        433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS  512 (968)
T ss_pred             EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence            666665555555555555666666666666554221    2456777888888887777777778888888888888888


Q ss_pred             cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967          366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       366 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  443 (445)
                      +..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+++++++|++.+.+|..
T Consensus       513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            888888888888888888888888888888888888999999999888888888888888999999999988888853

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-47  Score=399.30  Aligned_cols=440  Identities=38%  Similarity=0.574  Sum_probs=369.2

Q ss_pred             CccCCCCCcEEeccCCcCCCCCC-cccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCC
Q 039967            2 AFSSFPHLVHLNLSFNILFGIIP-PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSL   80 (445)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   80 (445)
                      +|+.+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|.  ..+++|++|++++|.+.+..|..+..+++
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence            36789999999999999875444 4455899999999999998866664  45789999999999999889999999999


Q ss_pred             ccEEEecCcccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEecc
Q 039967           81 INVLALCHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS  150 (445)
Q Consensus        81 L~~l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  150 (445)
                      |+++++++|.+.          ++|++|++++|.+....|..+..+++|++|++++|.+....|..+..+++|++|++.+
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            999999988653          6899999999999989999999999999999999999888899999999999999999


Q ss_pred             CccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCC
Q 039967          151 NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP  230 (445)
Q Consensus       151 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  230 (445)
                      |.+....|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|+.+++++|.+....+
T Consensus       246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~  325 (968)
T PLN00113        246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP  325 (968)
T ss_pred             ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence            99887888999999999999999999988888889999999999999999988888889999999999999999887777


Q ss_pred             ccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCc
Q 039967          231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTS  310 (445)
Q Consensus       231 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  310 (445)
                      ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+...++++.+++++|.+.+..|..+..+++
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  405 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS  405 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence            88899999999999999998777888888899999999988876555555555555555555555555444444444445


Q ss_pred             cceeec------------------------cCccccccc-----cCCCcceEEcccCccccCCCccccCCCCCcEEECCC
Q 039967          311 VERVLL------------------------NQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS  361 (445)
Q Consensus       311 L~~L~l------------------------~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  361 (445)
                      |+.|++                        ++|.+.+..     .+++|+.|++.+|++.+..+..+ ..++|+.|++++
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~  484 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSR  484 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcC
Confidence            555544                        444443221     25566666666666655555443 346788888888


Q ss_pred             CccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967          362 NNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       362 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      |.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|+|++|.+++..|..+..+++|++|++++|++++.+|
T Consensus       485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence            88888888888899999999999999988889999999999999999999998899999999999999999999999999


Q ss_pred             CCC
Q 039967          442 VEL  444 (445)
Q Consensus       442 ~~~  444 (445)
                      ..+
T Consensus       565 ~~l  567 (968)
T PLN00113        565 KNL  567 (968)
T ss_pred             hhH
Confidence            654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-37  Score=278.04  Aligned_cols=375  Identities=24%  Similarity=0.240  Sum_probs=272.5

Q ss_pred             CcEEeccCCcCCCCCCcccCC-C-CCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            9 LVHLNLSFNILFGIIPPQIGN-L-SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      -+.|+.++..+..+....+.. + +.-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.......+++.+.+
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            344555665555443322222 1 23556888888887777777788888888888888776 56766666666777777


Q ss_pred             cCcccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc
Q 039967           87 CHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS  156 (445)
Q Consensus        87 ~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  156 (445)
                      .+|.+.          +.|+.++++.|.+++.....|..-.++++|++++|.+++.....|..+.+|-.|.++.|.++..
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            766554          5677777777777766666677777888888888888877777888888888888888888855


Q ss_pred             cCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCC
Q 039967          157 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL  236 (445)
Q Consensus       157 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  236 (445)
                      .+..|.++++|+.|++..|++...-.-.|+++++|+.|.+..|.+.......|..+.++++|++..|.+......++.++
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence            55577788888888888888764445567888888888888888887767778888888888888888876667778888


Q ss_pred             CcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeec
Q 039967          237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL  316 (445)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  316 (445)
                      ++|+.|++++|.+..+-++.|..+++|+.|+++.|.++...+..+..+..|+.|+++.|++.......|.++.+|++|++
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            88888888888888877778888888888888888888777778888888888888888887666667788888888888


Q ss_pred             cCcccccc--------ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccC
Q 039967          317 NQNNLSGK--------VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL  385 (445)
Q Consensus       317 ~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  385 (445)
                      +.|.+.-.        ..+++|+.|++.+|++......++.+++.|++|++.+|.+...-+.+|+.+ .|++|.+..
T Consensus       373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            88876521        115566666666666654444555666666666666666655555566555 555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-37  Score=273.87  Aligned_cols=385  Identities=23%  Similarity=0.212  Sum_probs=288.7

Q ss_pred             CcEEeccCcccCCCCCccccCC--CCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCcc
Q 039967           33 LQYLDLGSNQLSGVIPLEIGHL--NQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP  110 (445)
Q Consensus        33 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~  110 (445)
                      -+.|+.+...+.......+...  +.-+.|++++|.+....+..|.++++|+++++..|..               ..+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---------------t~IP  118 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---------------TRIP  118 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh---------------hhcc
Confidence            4556788777765544455433  2456799999999988888899999888888776654               2555


Q ss_pred             ccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCC
Q 039967          111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSS  190 (445)
Q Consensus       111 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  190 (445)
                      ..-....+|+.|++.+|.++.+....+..++-|++++++.|.++..--..|..-.++++|++++|+|+......|..+.+
T Consensus       119 ~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  119 RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence            54444456777777777777666666777777777777777776444445666677777888777777666667777777


Q ss_pred             CcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEeccc
Q 039967          191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT  270 (445)
Q Consensus       191 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  270 (445)
                      |..|+++.|+++...+..|+.+++|+.|++..|.+.-.--.+|.++++|+.|.+..|.+.....+.|..+.++++|+++.
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET  278 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence            77888888887766666777778888888877777644345677778888888877777776667777777888888887


Q ss_pred             CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCC
Q 039967          271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIP  345 (445)
Q Consensus       271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~  345 (445)
                      |++......++..++.|+.|++++|.+...-+..+..+++|+.|+++.|.+....     .+..|+.|.+++|.++-.-.
T Consensus       279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e  358 (873)
T KOG4194|consen  279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE  358 (873)
T ss_pred             chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence            7777656667777778888888888777666666777778888888877765322     26677777888877765555


Q ss_pred             ccccCCCCCcEEECCCCcccc---ccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967          346 PEIGDSPKLQVLDLSSNNIVG---EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       346 ~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      ..+..+.+|++||+++|.+..   ..+..|..+++|++|.+.||++..+...+|.++++|+.|||.+|.+..+.+.+|..
T Consensus       359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence            578889999999999998662   34566778999999999999998666688999999999999999999899999988


Q ss_pred             CCCccEEeCCC
Q 039967          423 LLRLCYLDLSN  433 (445)
Q Consensus       423 ~~~L~~l~l~~  433 (445)
                      + .|++|.+..
T Consensus       439 m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  439 M-ELKELVMNS  448 (873)
T ss_pred             c-hhhhhhhcc
Confidence            8 888876543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2e-34  Score=261.47  Aligned_cols=370  Identities=27%  Similarity=0.375  Sum_probs=236.5

Q ss_pred             ccCCCCCcEEeccCCcCC-CCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc
Q 039967            3 FSSFPHLVHLNLSFNILF-GIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI   81 (445)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   81 (445)
                      .+-++-+|-+++++|++. .-.|..+..++++++|.+....+. ..|+.++.+++|++|.+++|++. .+--.++.++.|
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL   80 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence            456788899999999998 446888888999999999999888 88999999999999999999876 233344555544


Q ss_pred             cEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccc
Q 039967           82 NVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSII  161 (445)
Q Consensus        82 ~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  161 (445)
                      +.+.+..|+..             .+.+|..+-.+..|+.||+++|++. ..|..+...+++-.|++++|.|..+....|
T Consensus        81 Rsv~~R~N~LK-------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lf  146 (1255)
T KOG0444|consen   81 RSVIVRDNNLK-------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLF  146 (1255)
T ss_pred             HHHhhhccccc-------------cCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHH
Confidence            44444333221             3356666667777777777777776 566666666677777777777663333345


Q ss_pred             cCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccE
Q 039967          162 GNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA  241 (445)
Q Consensus       162 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  241 (445)
                      -++..|-.||+++|++. .+|..+..+..|++|.+++|++.                        ......+..+++|++
T Consensus       147 inLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~------------------------hfQLrQLPsmtsL~v  201 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN------------------------HFQLRQLPSMTSLSV  201 (1255)
T ss_pred             HhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh------------------------HHHHhcCccchhhhh
Confidence            56666666666666654 44444555555555555555443                        222223334444444


Q ss_pred             EEeeCcccc-ccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcc
Q 039967          242 LYLYNNGLY-SFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN  320 (445)
Q Consensus       242 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  320 (445)
                      |++++.+-+ ..+|..+..+.+|..++++.|++. ..|+.+..+++|+.|++++|.++ +.........+|+.|++++|+
T Consensus       202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence            444443221 113334444555555555555554 44555555555555555555555 333334444555555555555


Q ss_pred             ccccc----cCCCcceEEcccCccc-cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh
Q 039967          321 LSGKV----NVPKLGTFIISVNNIS-ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE  395 (445)
Q Consensus       321 ~~~~~----~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  395 (445)
                      ++..+    .++.|+.|...+|+++ +.+|..++.+..|+++...+|.+. ..|+++..|.+|+.|.++.|.+. ++|++
T Consensus       280 Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea  357 (1255)
T KOG0444|consen  280 LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA  357 (1255)
T ss_pred             hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence            54221    2444444444445544 346777888888888888888876 78888888888888888888887 78888


Q ss_pred             hcCCccCceeecCCCccccccC
Q 039967          396 LGSLIELQYLDLSTNKLKSSIP  417 (445)
Q Consensus       396 ~~~~~~L~~L~l~~~~~~~~~~  417 (445)
                      ++-++.|++||+.+|.-.-..|
T Consensus       358 IHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  358 IHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhcCCcceeeccCCcCccCCC
Confidence            8888888888888887664444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=3.8e-35  Score=252.44  Aligned_cols=422  Identities=30%  Similarity=0.407  Sum_probs=319.6

Q ss_pred             cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967            4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV   83 (445)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   83 (445)
                      ..+.-+.+|++..|+.... |.+++++..+..++.+++.+. ..|.++.....|+.++++++.+. ..++.+..+..+..
T Consensus        65 ~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED  141 (565)
T ss_pred             hcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence            3456677888888877666 556777888888888888887 77888888888888888888876 57778888888888


Q ss_pred             EEecCcccc---------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc
Q 039967           84 LALCHNYFV---------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS  154 (445)
Q Consensus        84 l~l~~~~~~---------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  154 (445)
                      ++..+++..         .++..+++.++.+....+..+. |+.|++||...|.++ ..|..++.+..|..|.+..|++.
T Consensus       142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence            887777664         5567778888887766666555 889999999988887 67788999999999999999887


Q ss_pred             cccCccccCCCCcCEEeCCCccccccccccc-cCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccc
Q 039967          155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSF-GNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI  233 (445)
Q Consensus       155 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  233 (445)
                       ..| .|.+|..|+.+.++.|.+. ..|++. ..++++.+|++.+|.+. ..|+.+..+.+|+.+|+++|.++ ..+.++
T Consensus       220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL  294 (565)
T KOG0472|consen  220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL  294 (565)
T ss_pred             -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence             666 6888999999999988876 566555 48899999999999998 67888888899999999999887 677788


Q ss_pred             cCCCcccEEEeeCccccccChhhhc-----------------------------------------ccccccEEecccCc
Q 039967          234 GNLSSLRALYLYNNGLYSFVPEEIR-----------------------------------------YLTSLSELELCTNH  272 (445)
Q Consensus       234 ~~~~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------~~~~L~~L~l~~~~  272 (445)
                      +.+ .|+.|.+.||++..+..+.+.                                         ...+.+.|++++-.
T Consensus       295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q  373 (565)
T KOG0472|consen  295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ  373 (565)
T ss_pred             ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence            888 888888888865332111111                                         11233445555444


Q ss_pred             cCCCcccccccc--CCccEEEcCCCcccCCCCccccccCccce-eeccCccccc----cccCCCcceEEcccCccccCCC
Q 039967          273 LSGVIPHSIGNL--TGLLLLNMCENHLSGPIPKSFKNLTSVER-VLLNQNNLSG----KVNVPKLGTFIISVNNISESIP  345 (445)
Q Consensus       273 ~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~  345 (445)
                      ++..+.+.|..-  .-++.+++++|++. ++|..+..+..+.. +.++.+.+.-    .+.+++|..|++++|.+. .+|
T Consensus       374 lt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  374 LTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             cccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcc
Confidence            443333333221  23566777777766 55555554444433 3444444331    123889999999998886 567


Q ss_pred             ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCC
Q 039967          346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR  425 (445)
Q Consensus       346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  425 (445)
                      ..+..+-.|+.++++.|.+. ..|........++++..++|++....+..+.+|.+|..||+.+|.+. ..|..+.++.+
T Consensus       452 ~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn  529 (565)
T KOG0472|consen  452 EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN  529 (565)
T ss_pred             hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence            77777888999999999987 77888888888999999999998777777999999999999999997 78889999999


Q ss_pred             ccEEeCCCCcccccCCC
Q 039967          426 LCYLDLSNNQFGHKILV  442 (445)
Q Consensus       426 L~~l~l~~~~~~~~~~~  442 (445)
                      |+++.++||+|.  .|.
T Consensus       530 L~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  530 LRHLELDGNPFR--QPR  544 (565)
T ss_pred             eeEEEecCCccC--CCH
Confidence            999999999998  453

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=5.7e-31  Score=248.89  Aligned_cols=411  Identities=30%  Similarity=0.351  Sum_probs=291.7

Q ss_pred             CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967            6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA   85 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   85 (445)
                      +-+|++|++++|.+... |..+..+++|+.|+++.|.|. ..|....++.+|+++.+.++.+. ..|.+++.+.+|+.++
T Consensus        44 ~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD  120 (1081)
T ss_pred             eeeeEEeeccccccccC-CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence            34588999998877655 556777888999999988888 56677888889999998887765 6788888888888888


Q ss_pred             ecCcccc----------------------------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccc
Q 039967           86 LCHNYFV----------------------------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSL  137 (445)
Q Consensus        86 l~~~~~~----------------------------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  137 (445)
                      ++++.|.                            ..++.+++..+.+...++..+..+..  .|++..|.+. .  ..+
T Consensus       121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dl  195 (1081)
T KOG0618|consen  121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDL  195 (1081)
T ss_pred             cchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhh
Confidence            8888775                            22334444444444444433333333  3566665554 1  234


Q ss_pred             cCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCE
Q 039967          138 GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSA  217 (445)
Q Consensus       138 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  217 (445)
                      ..+++|+.+....+++....    -.-++|+.|+...|.+....+  .....+|+.++++.+.+. .+|.++..+++|+.
T Consensus       196 s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~  268 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEA  268 (1081)
T ss_pred             hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceE
Confidence            44556666666555544211    123667777777777652221  233456778888888777 55677788888888


Q ss_pred             EEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCC-ccEEEcCCCc
Q 039967          218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG-LLLLNMCENH  296 (445)
Q Consensus       218 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~  296 (445)
                      ++...|.+. ..+..+...++|+.+....|.+.. .+......+.|+.|++..|.+.......+..... +..++.+.++
T Consensus       269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence            888877775 444455566777777777777766 3445556778888888888777544444444443 6777777777


Q ss_pred             ccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchh
Q 039967          297 LSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ  371 (445)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  371 (445)
                      +.......-...+.|+.|.+.+|.+++.+     .+++|+.|.+++|++.......+.+++.|++|+++||+++ .+|..
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence            66433333345567888888888887653     3889999999999998777788899999999999999998 77788


Q ss_pred             hccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccC-ccccCCCCccEEeCCCCccc
Q 039967          372 LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP-KSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       372 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +..+..|++|+..+|.+. .+| .+..++.|+.+|++.|++..... ..... ++|++|+++||.+.
T Consensus       426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL  489 (1081)
T ss_pred             HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence            999999999999999998 778 77889999999999999885433 33333 89999999999753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=1.6e-31  Score=230.19  Aligned_cols=387  Identities=32%  Similarity=0.439  Sum_probs=282.3

Q ss_pred             cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967           27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF  106 (445)
Q Consensus        27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~  106 (445)
                      ..+..-++.+.+++|.+. ...+.+.+++.|.+|++.++... ..|+++.++..++.++.+++...              
T Consensus        41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--------------  104 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--------------  104 (565)
T ss_pred             hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--------------
Confidence            344556888899999887 55567778889999999999887 67888888887777776665432              


Q ss_pred             CCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccccc
Q 039967          107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG  186 (445)
Q Consensus       107 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  186 (445)
                       .+|..+....++..++++.+.+. ..++.+..+..++.+...+|+++ ..|..+.++.++..+++.++.+. ..|+..-
T Consensus       105 -~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i  180 (565)
T KOG0472|consen  105 -ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI  180 (565)
T ss_pred             -hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence             56667777778888888888777 56667777777777777777777 66777777788888888887776 3444444


Q ss_pred             CCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEE
Q 039967          187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL  266 (445)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  266 (445)
                      .++.|++++...|... ..|..++.+..|+.+++..|++. ..+ .|.+|..|++++++.|.+.-.+.....+++++..|
T Consensus       181 ~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  181 AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence            5777888888777776 56666777888888888888776 333 67777888888887777766555566677778888


Q ss_pred             ecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc---------------------
Q 039967          267 ELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV---------------------  325 (445)
Q Consensus       267 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------  325 (445)
                      ++++|.++ +.|..+..+++|.+||+++|.++ ..|..++++ +|+.|.+.||.+...-                     
T Consensus       258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~  334 (565)
T KOG0472|consen  258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD  334 (565)
T ss_pred             eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence            88888776 55666677777888888888777 566667766 7777777777643100                     


Q ss_pred             -------------------c------CCCcc--------------------------eEEcccCcccc------------
Q 039967          326 -------------------N------VPKLG--------------------------TFIISVNNISE------------  342 (445)
Q Consensus       326 -------------------~------~~~L~--------------------------~L~l~~~~~~~------------  342 (445)
                                         .      ..+.+                          .++++.|++.+            
T Consensus       335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelv  414 (565)
T KOG0472|consen  335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELV  414 (565)
T ss_pred             CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence                               0      11122                          23333333321            


Q ss_pred             -----------CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCc
Q 039967          343 -----------SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK  411 (445)
Q Consensus       343 -----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  411 (445)
                                 -.+..+..++.|..|++++|.+. .+|..++.+-.|++++++.|.+. ..|+....+..++.+-.++|+
T Consensus       415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             HHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence                       11223455788888999988876 77888888888999999998777 778888888888888888899


Q ss_pred             cccccCccccCCCCccEEeCCCCcccccCCC
Q 039967          412 LKSSIPKSIGNLLRLCYLDLSNNQFGHKILV  442 (445)
Q Consensus       412 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  442 (445)
                      +....+..+.++.+|.++++.+|.+- ++|.
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp  522 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP  522 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence            98777777999999999999999876 5553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=3.7e-30  Score=233.91  Aligned_cols=361  Identities=29%  Similarity=0.404  Sum_probs=301.8

Q ss_pred             CCCcEEeccCcccC-CCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967           31 SNLQYLDLGSNQLS-GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI  109 (445)
Q Consensus        31 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~  109 (445)
                      +=.+..++++|.++ +..|..+.+|..++-|.++...+.                                       .+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~---------------------------------------~v   47 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE---------------------------------------QV   47 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh---------------------------------------hC
Confidence            33455566666555 345555555655555555555443                                       56


Q ss_pred             cccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc-cccCccccCCCCcCEEeCCCccccccccccccCC
Q 039967          110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS-GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL  188 (445)
Q Consensus       110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  188 (445)
                      |+.++.+.+|++|.+.+|++. .+-..+..++.|+.+.+..|.+. ...|..+..+..|..||++.|++. ..|..+...
T Consensus        48 PeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A  125 (1255)
T KOG0444|consen   48 PEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA  125 (1255)
T ss_pred             hHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh
Confidence            677778888888888888887 44567788899999999988875 246777788999999999999987 678889889


Q ss_pred             CCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEec
Q 039967          189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL  268 (445)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  268 (445)
                      +++-+|.+++|.|..+....+-++..|-.|++++|.+. ..+..+.++..|++|.+++|++.-+....+..+++|+.|++
T Consensus       126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            99999999999998666677788899999999999987 56667888999999999999987766667777888999999


Q ss_pred             ccCccC-CCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc----cCCCcceEEcccCccccC
Q 039967          269 CTNHLS-GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV----NVPKLGTFIISVNNISES  343 (445)
Q Consensus       269 ~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~L~~L~l~~~~~~~~  343 (445)
                      ++..-+ ...|..+..+.+|..+|++.|.+. ..|+.+..+++|+.|++++|+++...    ...+|++|+++.|+++ .
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~  282 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-V  282 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-c
Confidence            887544 346677888999999999999998 88999999999999999999988543    3679999999999998 7


Q ss_pred             CCccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967          344 IPPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      +|.++..++.|+.|+..+|+++ +-+|++++++..|+.+..++|.+. ..|+.++.|+.|+.|.|+.|.+. ..|+++.-
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl  360 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL  360 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh
Confidence            8889999999999999999977 458899999999999999999998 88999999999999999999987 79999999


Q ss_pred             CCCccEEeCCCCccc
Q 039967          423 LLRLCYLDLSNNQFG  437 (445)
Q Consensus       423 ~~~L~~l~l~~~~~~  437 (445)
                      ++.|+.|++..|+-.
T Consensus       361 L~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  361 LPDLKVLDLRENPNL  375 (1255)
T ss_pred             cCCcceeeccCCcCc
Confidence            999999999999765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=8.9e-29  Score=234.16  Aligned_cols=402  Identities=31%  Similarity=0.376  Sum_probs=258.2

Q ss_pred             CcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967            9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH   88 (445)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   88 (445)
                      +..|++..|.+-..+-+.+.+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++.+|+.+.+..
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence            445555555444433344445556777777777776 66667777777777777777665 4556666666666665555


Q ss_pred             cccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCC-------------------CceEEec
Q 039967           89 NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN-------------------LDKLYLY  149 (445)
Q Consensus        89 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------L~~L~l~  149 (445)
                      +..               ...|..+..+.+|++|++++|.+. ..|..+..+..                   ++.+.+.
T Consensus       101 n~l---------------~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~  164 (1081)
T KOG0618|consen  101 NRL---------------QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLR  164 (1081)
T ss_pred             chh---------------hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhh
Confidence            433               244555555555555555555544 22222222222                   3344444


Q ss_pred             cCccccccCccccCCCCcCEEeCCCccccccccccccCC--------------------CCCcEEEccCCccCCCCCccc
Q 039967          150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL--------------------SSLTLMSLFNNSLSGSLPPIL  209 (445)
Q Consensus       150 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~  209 (445)
                      .+.+...++..+.++.+  .|++++|.+. ..  .+..+                    ++++.|++..|.++...+.  
T Consensus       165 ~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--  237 (1081)
T KOG0618|consen  165 LNVLGGSFLIDIYNLTH--QLDLRYNEME-VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--  237 (1081)
T ss_pred             hhhcccchhcchhhhhe--eeecccchhh-hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--
Confidence            44443334444444444  4666666544 11  11222                    4555555555555422111  


Q ss_pred             cCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccE
Q 039967          210 GNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL  289 (445)
Q Consensus       210 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  289 (445)
                      ....+|+.++++.+.+. ..+.++..+++|+.++...|.+.. .+..+....+|+.+.+..|.+. ..+......+.|++
T Consensus       238 p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  238 PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT  314 (1081)
T ss_pred             cccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence            12245666777766666 333666666777777777766644 4445555566677777766665 34445566677777


Q ss_pred             EEcCCCcccCCCCccccccCc-cceeeccCccccc-----cccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCc
Q 039967          290 LNMCENHLSGPIPKSFKNLTS-VERVLLNQNNLSG-----KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN  363 (445)
Q Consensus       290 L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  363 (445)
                      |++..|.+.......+..... ++.++.+.+.+..     ...++.|+.|++.+|.+++.....+.++++|+.|++++|.
T Consensus       315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            777777766332222222222 5555555555442     2337789999999999999999999999999999999999


Q ss_pred             cccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc-ccCC
Q 039967          364 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG-HKIL  441 (445)
Q Consensus       364 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~  441 (445)
                      +....+..+.+++.|+.|+++||++. .+|.....++.|++|...+|.+. ..| .+..+++|+.+|++.|.++ ..+|
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~  470 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP  470 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence            98666677889999999999999998 88899999999999999999997 667 8899999999999999988 3344

>PLN03210 Resistant to P

Probab=99.92  E-value=2.1e-23  Score=218.48  Aligned_cols=341  Identities=21%  Similarity=0.221  Sum_probs=223.6

Q ss_pred             CCCccccCCCCCcEEEecCccc------ccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCC
Q 039967           46 VIPLEIGHLNQLRILYFDVNQL------HGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSL  119 (445)
Q Consensus        46 ~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L  119 (445)
                      ..+.+|.+|++|+.|.+..+..      ....|..+..++             .+|+.|.+.++++. .+|..+ ...+|
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp-------------~~Lr~L~~~~~~l~-~lP~~f-~~~~L  613 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP-------------PKLRLLRWDKYPLR-CMPSNF-RPENL  613 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcC-------------cccEEEEecCCCCC-CCCCcC-CccCC
Confidence            3445677788888887755432      112344443333             35566666655543 444444 45677


Q ss_pred             cEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCC
Q 039967          120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN  199 (445)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  199 (445)
                      +.|++.++.+. .++..+..+++|+.++++++......|. +..+++|++|++++|.....+|..+..+++|+.|.+.+|
T Consensus       614 ~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        614 VKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             cEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            78888877776 4555667777888888876653324443 666778888888777655566777777788888888776


Q ss_pred             ccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCC----
Q 039967          200 SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSG----  275 (445)
Q Consensus       200 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----  275 (445)
                      .....+|..+ ++++|+.|++++|......+.   ..++|+.|++.++.+..+ |..+ .+++|++|.+.++....    
T Consensus       692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchhhcccc
Confidence            5444555544 567788888877754323222   235677788877776553 3222 45677777776543211    


Q ss_pred             ---CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccc-cc---cccCCCcceEEcccCccccCCCccc
Q 039967          276 ---VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL-SG---KVNVPKLGTFIISVNNISESIPPEI  348 (445)
Q Consensus       276 ---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~---~~~~~~L~~L~l~~~~~~~~~~~~~  348 (445)
                         ..+.....+++|+.|++++|.....+|..+..+++|+.|++++|.. ..   ...+++|+.|++++|......+.. 
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-  844 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-  844 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-
Confidence               1111123346888888888877667788888888888888888742 21   223677888888887654443332 


Q ss_pred             cCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                        .++|+.|++++|.+. ..|..+..+++|+.|++++|+....++.....+++|+.+++++|...
T Consensus       845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence              367888999988887 67778888899999999988776667777778888889999888654

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=5e-23  Score=215.66  Aligned_cols=340  Identities=24%  Similarity=0.274  Sum_probs=222.8

Q ss_pred             CcccCCCCCCcEEeccCcc------cCCCCCccccCCC-CCcEEEecCcccccCCCcccccCCCccEEEecCcccccccc
Q 039967           24 PPQIGNLSNLQYLDLGSNQ------LSGVIPLEIGHLN-QLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLA   96 (445)
Q Consensus        24 ~~~~~~~~~L~~L~l~~~~------~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~   96 (445)
                      ...|.++++|+.|.+..+.      +....|..+..++ +|+.|.+.++.+. .+|..+ ...              +|+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~--------------~L~  614 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPE--------------NLV  614 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-Ccc--------------CCc
Confidence            4557777788888775542      2223455555553 5888888777665 445444 223              444


Q ss_pred             eEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc
Q 039967           97 NFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ  176 (445)
Q Consensus        97 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  176 (445)
                      +|++.++.+. .++..+..+++|+.|+++++......| .+..+++|++|++.+|......|..+.++++|+.|++++|.
T Consensus       615 ~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        615 KLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             EEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            4555554433 345556677788888887765333444 36677788888887776544667777778888888888776


Q ss_pred             ccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc-----
Q 039967          177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS-----  251 (445)
Q Consensus       177 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----  251 (445)
                      ....+|..+ .+++|+.|.+.+|.....+|..   ..+|+.|+++++.+. ..+..+ .+++|+.|.+.++....     
T Consensus       693 ~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~  766 (1153)
T PLN03210        693 NLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERV  766 (1153)
T ss_pred             CcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccc
Confidence            544556544 6777888888777554444432   356777788777765 333332 45677777766543211     


Q ss_pred             --cChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc-cc-C
Q 039967          252 --FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-VN-V  327 (445)
Q Consensus       252 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~  327 (445)
                        ..+.....+++|+.|++++|......+..+..+++|+.|++++|.....+|... .+++|+.|++++|..... +. .
T Consensus       767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~  845 (1153)
T PLN03210        767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS  845 (1153)
T ss_pred             cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence              111122334678888888886666677778888888888888875444555544 578888888888753322 22 4


Q ss_pred             CCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967          328 PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS  389 (445)
Q Consensus       328 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  389 (445)
                      ++++.|++.++.+. ..|.++..+++|++|++++|.....++..+..+++|+.+++++|+..
T Consensus       846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            57888888888886 46677888899999999998755466767778889999999998754

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.1e-24  Score=185.07  Aligned_cols=399  Identities=23%  Similarity=0.237  Sum_probs=212.3

Q ss_pred             CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecC-cccccCCCcccccCCCccEEEe
Q 039967            8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV-NQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      ....++|..|.|..+++..|+.+++||+|+|+.|.|+.+-|++|.+++.|..|.+-+ |.|.......|.++..|+.+.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345677777777777777777777777777777777777777777777766665554 6666555555666665555544


Q ss_pred             cCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc------------
Q 039967           87 CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS------------  154 (445)
Q Consensus        87 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------  154 (445)
                      ..+              .+.-...+.|+.++++..|.+..|.+..+....|..+..++.+.+..+.+.            
T Consensus       148 Nan--------------~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  148 NAN--------------HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             Chh--------------hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence            433              223344455666666666666666665444446666666666655554421            


Q ss_pred             cccCccccCCCCcCEEeCCCcccccccccccc-CCCCCcEEEccCCccCCCCC-ccccCCCCcCEEEccCccccCCCCcc
Q 039967          155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG-NLSSLTLMSLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSS  232 (445)
Q Consensus       155 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~  232 (445)
                      ...+..++......-..+.+.++....+..|. .+.++..=....+......| ..|..+++|+++++++|+++.+-..+
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence            01111122222222222222222111111111 01111110111111111222 23556666666666666666565666


Q ss_pred             ccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCC-CCccccccCcc
Q 039967          233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP-IPKSFKNLTSV  311 (445)
Q Consensus       233 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L  311 (445)
                      |.+...++.|++..|++..+....|.++.+|+.|++.+|+++...+.+|....+|.+|++-.|++... -..|+...  |
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W--l  371 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW--L  371 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH--H
Confidence            66666666666666666555555666666666666666666655555666666666666665544311 00111100  0


Q ss_pred             ceeeccCccccccccCC---CcceEEcccCcccc------------CCCccccCCCCCcE-EECCCCccccccchhhccc
Q 039967          312 ERVLLNQNNLSGKVNVP---KLGTFIISVNNISE------------SIPPEIGDSPKLQV-LDLSSNNIVGEIPVQLGKL  375 (445)
Q Consensus       312 ~~L~l~~~~~~~~~~~~---~L~~L~l~~~~~~~------------~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~~  375 (445)
                      +     .....+.+.+.   .++.+.+....+.+            ..+.+...|+-+.+ ...++..++ .+|..+.  
T Consensus       372 r-----~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--  443 (498)
T KOG4237|consen  372 R-----KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--  443 (498)
T ss_pred             h-----hCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--
Confidence            0     00000111111   23333333222211            01112233444433 344544444 4444442  


Q ss_pred             cCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCC
Q 039967          376 FSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN  434 (445)
Q Consensus       376 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  434 (445)
                      ..-..+|+.+|.+. .+|..  .+.+| .+|+++|++....-..|.++++|.++-|++|
T Consensus       444 ~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  444 VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            24568999999998 55554  44678 9999999998767778999999999988875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=4.6e-24  Score=184.03  Aligned_cols=382  Identities=22%  Similarity=0.243  Sum_probs=256.6

Q ss_pred             CCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccc
Q 039967           32 NLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL  111 (445)
Q Consensus        32 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~  111 (445)
                      ....|.|..|.|++..+.+|+.+++|+.||+++|.|...-|.+|..++.|..+-+             +++|.|++...+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvl-------------yg~NkI~~l~k~  134 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVL-------------YGNNKITDLPKG  134 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHh-------------hcCCchhhhhhh
Confidence            5677889999999888899999999999999999999888888888886544433             233566666667


Q ss_pred             cccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccc-----------
Q 039967          112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS-----------  180 (445)
Q Consensus       112 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------  180 (445)
                      .|+++..++.|.+..+.+.-...+.|..++.+..|.+-+|.+....-..|..+..++++.+..+++...           
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence            888888888888888888777778888888888888888887743333777888888888776663211           


Q ss_pred             -ccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEE--E-ccCccccCC-CCccccCCCcccEEEeeCccccccChh
Q 039967          181 -IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL--G-LHINQLSGV-IPSSIGNLSSLRALYLYNNGLYSFVPE  255 (445)
Q Consensus       181 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L--~-l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~  255 (445)
                       .|-.++......-..+.+.++.+.....+...  ++.+  . -+.+..... ....|.++++|+++++++|.++.+...
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~  292 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG  292 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence             11112222222222333333333333322211  1211  1 112222212 224688999999999999999999999


Q ss_pred             hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEc
Q 039967          256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFII  335 (445)
Q Consensus       256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l  335 (445)
                      +|.+...+++|.+..|++.......|..+.+|+.|++.+|+++...|.+|.....|..|++-+|.+-..+.+..|.. ++
T Consensus       293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-Wl  371 (498)
T KOG4237|consen  293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-WL  371 (498)
T ss_pred             hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-HH
Confidence            99999999999999999986666778899999999999999998899999999999999999888754443322221 11


Q ss_pred             ccCccccCCCccccCCCCCcEEECCCCcccc---ccchh---------hccccCCCEEEccCCeeecccchhhcCCccCc
Q 039967          336 SVNNISESIPPEIGDSPKLQVLDLSSNNIVG---EIPVQ---------LGKLFSLNKLILNLNQLSGGMPLELGSLIELQ  403 (445)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  403 (445)
                      ......+..+.  +.-..++.+++++..+.+   ..|+.         -..|+-+.++.=..++....+|..+-  ..-.
T Consensus       372 r~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~t  447 (498)
T KOG4237|consen  372 RKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVT  447 (498)
T ss_pred             hhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhH
Confidence            12222222221  122346667776665431   12222         13455666655545554435554332  2577


Q ss_pred             eeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       404 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      .|.+.+|.++....+   .+..| .+++++|+|+
T Consensus       448 elyl~gn~~~~vp~~---~~~~l-~~dls~n~i~  477 (498)
T KOG4237|consen  448 ELYLDGNAITSVPDE---LLRSL-LLDLSNNRIS  477 (498)
T ss_pred             HHhcccchhcccCHH---HHhhh-hcccccCcee
Confidence            899999999855444   45667 8899999887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.1e-18  Score=168.69  Aligned_cols=261  Identities=25%  Similarity=0.403  Sum_probs=124.9

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      .-..|+++++.++ .+|..+.  ++|+.|.+.+|.++ .+|.   .+++|++|++++|.++. +|.   ..++|+.|++.
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence            3445666666665 3444443  35666666666655 3333   23566666666666552 332   13456666666


Q ss_pred             CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCc
Q 039967          198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI  277 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  277 (445)
                      +|.+. .+|..   ...|+.|++++|.+... +.   ..++|+.|++++|.+... +.   ....|+.|++.+|.+... 
T Consensus       271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L-  337 (788)
T PRK15387        271 SNPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-  337 (788)
T ss_pred             CCchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCccccc-
Confidence            66554 22321   23455666666655422 11   124566666666655542 21   123455555665555422 


Q ss_pred             cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEE
Q 039967          278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVL  357 (445)
Q Consensus       278 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  357 (445)
                      +.   .+.+|++|++++|.+. .+|..   ..+|+.|.+++|.+...+..                       ..+|+.|
T Consensus       338 P~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l-----------------------~~~L~~L  387 (788)
T PRK15387        338 PT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL-----------------------PSGLKEL  387 (788)
T ss_pred             cc---cccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc-----------------------ccccceE
Confidence            21   1235666666666555 22321   23455555555554432221                       1334555


Q ss_pred             ECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          358 DLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      ++++|.+.. .|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|+++ ..|..+.++++|+.|++++|+++
T Consensus       388 dLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        388 IVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             EecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            555555442 2211   234555555555544 23321   124455555555554 34444555555555555555555


Q ss_pred             ccCC
Q 039967          438 HKIL  441 (445)
Q Consensus       438 ~~~~  441 (445)
                      +.+|
T Consensus       459 ~~~~  462 (788)
T PRK15387        459 ERTL  462 (788)
T ss_pred             chHH
Confidence            4444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=6.7e-18  Score=165.17  Aligned_cols=261  Identities=27%  Similarity=0.376  Sum_probs=180.0

Q ss_pred             cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeC
Q 039967           93 CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL  172 (445)
Q Consensus        93 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  172 (445)
                      .+-..|+++++.+. .+|..+.  ++|+.|++.+|.++ .+|.   ..++|++|++.+|.++ .+|..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence            34668899999887 5666564  48999999999998 4553   3589999999999988 45543   478999999


Q ss_pred             CCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcccccc
Q 039967          173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF  252 (445)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  252 (445)
                      .+|.+. .+|.   .+++|+.|.+.+|.+. .+|.   ..++|+.|++++|.+... +.   ...+|+.|++++|.+..+
T Consensus       270 s~N~L~-~Lp~---lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        270 FSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL  337 (788)
T ss_pred             cCCchh-hhhh---chhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CC---CcccccccccccCccccc
Confidence            999876 3444   2367889999999988 4454   347899999999988743 22   124688899999988764


Q ss_pred             ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc-CCCcc
Q 039967          253 VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VPKLG  331 (445)
Q Consensus       253 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~L~  331 (445)
                       +.   ...+|++|++++|.+... +.   .+.+|+.|++++|.+. .+|..   ...|+.|++++|.+...+. .++|+
T Consensus       338 -P~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~  405 (788)
T PRK15387        338 -PT---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLPSELK  405 (788)
T ss_pred             -cc---cccccceEecCCCccCCC-CC---CCcccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcccCCC
Confidence             32   225799999999998843 32   2468899999999988 35543   3578899999888764332 23555


Q ss_pred             eEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc
Q 039967          332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP  393 (445)
Q Consensus       332 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  393 (445)
                      .|++++|++.. +|..   ..+|+.|++++|.++ .+|..+.+++.|+.|++++|++.+..+
T Consensus       406 ~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        406 ELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             EEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            56666655543 2221   134555555555555 445555555555556665555554333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=5e-19  Score=162.00  Aligned_cols=161  Identities=24%  Similarity=0.278  Sum_probs=93.5

Q ss_pred             ccccEEecccCccCCCc----cccccccCCccEEEcCCCcccCCC----CccccccCccceeeccCccccccccCCCcce
Q 039967          261 TSLSELELCTNHLSGVI----PHSIGNLTGLLLLNMCENHLSGPI----PKSFKNLTSVERVLLNQNNLSGKVNVPKLGT  332 (445)
Q Consensus       261 ~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~  332 (445)
                      ++|+.+++++|.+....    ...+..++.|++|++++|.+.+..    +..+..+++|+.|++++|.+.+...      
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------  210 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA------  210 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH------
Confidence            45555666555554211    122333445666666655554221    1122233445555555444321100      


Q ss_pred             EEcccCccccCCCccccCCCCCcEEECCCCccccccchhhcc-----ccCCCEEEccCCeeec----ccchhhcCCccCc
Q 039967          333 FIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGK-----LFSLNKLILNLNQLSG----GMPLELGSLIELQ  403 (445)
Q Consensus       333 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~  403 (445)
                               ......+..+++|++|++++|.+.+.....+..     .+.|++|++++|.+++    .+...+..+++|+
T Consensus       211 ---------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~  281 (319)
T cd00116         211 ---------SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL  281 (319)
T ss_pred             ---------HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence                     112234566788999999999887543333322     3789999999998752    2334556668899


Q ss_pred             eeecCCCcccccc----CccccCC-CCccEEeCCCCcc
Q 039967          404 YLDLSTNKLKSSI----PKSIGNL-LRLCYLDLSNNQF  436 (445)
Q Consensus       404 ~L~l~~~~~~~~~----~~~~~~~-~~L~~l~l~~~~~  436 (445)
                      .+++++|.+.+..    +..+... +.|+++++.+++|
T Consensus       282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            9999999998653    3344444 6899999998876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=6e-16  Score=152.51  Aligned_cols=181  Identities=26%  Similarity=0.440  Sum_probs=94.2

Q ss_pred             cccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeecc
Q 039967          238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLN  317 (445)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  317 (445)
                      +|+.|++++|.+..+ +..+.  ++|+.|++++|.+.. .+..+.  ++|+.|++++|.+. .+|..+.  +.|+.|+++
T Consensus       242 ~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        242 TIQEMELSINRITEL-PERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             cccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence            444555555444432 22221  245555555554442 222221  34555555555544 2222221  245555555


Q ss_pred             Cccccccc--cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh
Q 039967          318 QNNLSGKV--NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE  395 (445)
Q Consensus       318 ~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  395 (445)
                      +|.+...+  ..++|+.|++.+|.++. +|..+.  ++|+.|++++|.+. .+|..+  .++|+.|++++|++. .+|..
T Consensus       313 ~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        313 SNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             CCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHh
Confidence            55544322  13456666666665553 333332  56777777777766 444444  257777777777776 44544


Q ss_pred             hcCCccCceeecCCCccccccCccc----cCCCCccEEeCCCCccc
Q 039967          396 LGSLIELQYLDLSTNKLKSSIPKSI----GNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       396 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~  437 (445)
                      +.  .+|+.|++++|++. ..|..+    ..++.+..+++.+|+++
T Consensus       386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            43  36777777777776 344333    33466777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.5e-17  Score=152.14  Aligned_cols=281  Identities=23%  Similarity=0.256  Sum_probs=141.8

Q ss_pred             EEecCCcCC-CCccccccCCCCCcEEEccCCcccCC----CCccccCCCCCceEEeccCccccccCccccCCCCcCEEeC
Q 039967           98 FYLNNNSLF-NSIPLVLGNLNSLSTMDLSQNQFSGS----IPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL  172 (445)
Q Consensus        98 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  172 (445)
                      +++..+.+. ......+..+..|+.+++.++.++..    ++..+...++++++.+.++.+.. .+..            
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~------------   69 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRG------------   69 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchH------------
Confidence            344444443 23333445555566666666665321    22233444556666655544321 0000            


Q ss_pred             CCccccccccccccCCCCCcEEEccCCccCCCCCccccCC---CCcCEEEccCccccCC----CCccccCC-CcccEEEe
Q 039967          173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL---KSLSALGLHINQLSGV----IPSSIGNL-SSLRALYL  244 (445)
Q Consensus       173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l  244 (445)
                           ....+..+..+++|+.|+++++.+....+..+..+   ++|+++++++|.+...    ....+..+ ++|+.+++
T Consensus        70 -----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L  144 (319)
T cd00116          70 -----LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL  144 (319)
T ss_pred             -----HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence                 00111223334444444444444432222222222   2255555555544311    11123344 66777777


Q ss_pred             eCcccccc----ChhhhcccccccEEecccCccCCCcc----ccccccCCccEEEcCCCcccCCC----CccccccCccc
Q 039967          245 YNNGLYSF----VPEEIRYLTSLSELELCTNHLSGVIP----HSIGNLTGLLLLNMCENHLSGPI----PKSFKNLTSVE  312 (445)
Q Consensus       245 ~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~  312 (445)
                      ++|.+...    ....+..+++|++|++++|.+.....    ..+...++|++|++++|.+.+..    ...+..+++|+
T Consensus       145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~  224 (319)
T cd00116         145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE  224 (319)
T ss_pred             CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence            77766521    22344555677778877777653221    22344467888888888765332    23344556677


Q ss_pred             eeeccCccccccccCCCcceEEcccCccccCCCccc-cCCCCCcEEECCCCccccc----cchhhccccCCCEEEccCCe
Q 039967          313 RVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGE----IPVQLGKLFSLNKLILNLNQ  387 (445)
Q Consensus       313 ~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~  387 (445)
                      .|++++|.+.+...               ......+ ...+.|+.|++++|.+++.    .+..+..+++|+.+++++|+
T Consensus       225 ~L~ls~n~l~~~~~---------------~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         225 VLNLGDNNLTDAGA---------------AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             EEecCCCcCchHHH---------------HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            77776665542100               0000000 1236788888888877632    33445566788888888888


Q ss_pred             eecc----cchhhcCC-ccCceeecCCCc
Q 039967          388 LSGG----MPLELGSL-IELQYLDLSTNK  411 (445)
Q Consensus       388 ~~~~----~~~~~~~~-~~L~~L~l~~~~  411 (445)
                      +...    ....+... +.|+++++.++.
T Consensus       290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         290 FGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            7633    33344444 678888887765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.62  E-value=3.2e-15  Score=147.42  Aligned_cols=245  Identities=26%  Similarity=0.464  Sum_probs=130.8

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967          117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL  196 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  196 (445)
                      .+...|+++++.++ .+|..+.  ++++.|++.+|.+. .+|..+.  ++|++|++++|.+. .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            34556666666665 3443332  45666677766666 3444332  46677777766655 3444332  35666777


Q ss_pred             cCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCC
Q 039967          197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV  276 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  276 (445)
                      ++|.+. .+|..+.  .+|+.|++++|.+. ..+..+.  ++|+.|++++|.+... +..+  .++|+.|++++|.+.. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-
Confidence            766665 3343332  35666777666665 2333222  3667777777666553 2222  1356666776666653 


Q ss_pred             ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc--CCCcceEEcccCccccCCCccccCCCCC
Q 039967          277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN--VPKLGTFIISVNNISESIPPEIGDSPKL  354 (445)
Q Consensus       277 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L  354 (445)
                      .+..+  .++|+.|++++|.+.. +|..+.  ++|+.|++++|.+...+.  .+.|+.|++++|++.. +|..+.  +.|
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-LP~~l~--~sL  390 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-LPENLP--AAL  390 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-CCHhHH--HHH
Confidence            22222  2566777777776653 443332  466666666666542211  3455556666555542 233222  246


Q ss_pred             cEEECCCCccccccchhh----ccccCCCEEEccCCeee
Q 039967          355 QVLDLSSNNIVGEIPVQL----GKLFSLNKLILNLNQLS  389 (445)
Q Consensus       355 ~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~  389 (445)
                      +.|++++|.+. .+|..+    ..++.+..+++.+|++.
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            66666666665 333332    22355666666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=9e-18  Score=128.98  Aligned_cols=164  Identities=33%  Similarity=0.574  Sum_probs=113.0

Q ss_pred             cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967           27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF  106 (445)
Q Consensus        27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~  106 (445)
                      +.++.+++.|.+++|.++ ..|..++.+.+|++|++.+|++. ..|..++.++.|+.++++-+..               
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl---------------   91 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------------   91 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------------
Confidence            344556666666666666 44445666666666666666665 5666666666666655543322               


Q ss_pred             CCccccccCCCCCcEEEccCCcccC-CCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccc
Q 039967          107 NSIPLVLGNLNSLSTMDLSQNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF  185 (445)
Q Consensus       107 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  185 (445)
                      ...|+.|+.++.|++||+..|++.+ ..|..|-.|..|+-|.+.+|.+. ..|..++.+.+|+.|.+.+|.+. .+|..+
T Consensus        92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkei  169 (264)
T KOG0617|consen   92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEI  169 (264)
T ss_pred             hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHH
Confidence            2567777888888888888777654 46777777778888888888776 67777788888888888888766 577777


Q ss_pred             cCCCCCcEEEccCCccCCCCCcccc
Q 039967          186 GNLSSLTLMSLFNNSLSGSLPPILG  210 (445)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~~~~~~  210 (445)
                      +.++.|++|.+.+|+++ .+|..+.
T Consensus       170 g~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  170 GDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             HHHHHHHHHhcccceee-ecChhhh
Confidence            88888888888888877 4454343

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=8.3e-17  Score=123.71  Aligned_cols=156  Identities=34%  Similarity=0.533  Sum_probs=92.4

Q ss_pred             CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967            5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL   84 (445)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   84 (445)
                      +++++++|.++.|+++.++ ..++.+.+|+.|++++|.+. ..|..++.++.|++|+++.|.+. ..|.+|+.++.|+++
T Consensus        31 ~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4455566666666665553 34566666666666666665 55556666666666666655554 456666666666666


Q ss_pred             EecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCC
Q 039967           85 ALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNL  164 (445)
Q Consensus        85 ~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  164 (445)
                      ++.++...             ....|..|..|..|+.|.++.|++. .+|..++++.+|+.|.+++|.+. .+|..++.+
T Consensus       108 dltynnl~-------------e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l  172 (264)
T KOG0617|consen  108 DLTYNNLN-------------ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL  172 (264)
T ss_pred             hccccccc-------------cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence            55554331             2244555556666666666666665 55556666666666666666554 455666666


Q ss_pred             CCcCEEeCCCcccc
Q 039967          165 KSLLQLDLSENQLI  178 (445)
Q Consensus       165 ~~L~~L~l~~~~~~  178 (445)
                      .+|+.|.+.+|+++
T Consensus       173 t~lrelhiqgnrl~  186 (264)
T KOG0617|consen  173 TRLRELHIQGNRLT  186 (264)
T ss_pred             HHHHHHhcccceee
Confidence            66666666666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=5.9e-12  Score=108.30  Aligned_cols=236  Identities=19%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             cCCCCcCEEeCCCccccc----cccccccCCCCCcEEEccCCccC---CCCC-------ccccCCCCcCEEEccCccccC
Q 039967          162 GNLKSLLQLDLSENQLIG----SIPLSFGNLSSLTLMSLFNNSLS---GSLP-------PILGNLKSLSALGLHINQLSG  227 (445)
Q Consensus       162 ~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~~  227 (445)
                      ..+..+..+++++|.+..    .....+...+.|+...+++.--.   ...|       ..+..+|+|++++++.|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            345677788888877542    12233455566777666553211   1111       123344566666666666543


Q ss_pred             CCCcc----ccCCCcccEEEeeCccccccChhhh-------------cccccccEEecccCccCCCcc----ccccccCC
Q 039967          228 VIPSS----IGNLSSLRALYLYNNGLYSFVPEEI-------------RYLTSLSELELCTNHLSGVIP----HSIGNLTG  286 (445)
Q Consensus       228 ~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~  286 (445)
                      ..+..    +.++..|+.|++.+|.+.......+             ...+.|+.+...+|++-....    ..+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            33222    2345666666666665543222221             122344444444444432211    12233344


Q ss_pred             ccEEEcCCCcccCC----CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967          287 LLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN  362 (445)
Q Consensus       287 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  362 (445)
                      |+.+.+..|++...    ....+..|++|+.|+|++|.++....               ..+...+..+++|+++++++|
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---------------~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---------------VALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---------------HHHHHHhcccchheeeccccc
Confidence            44444444443322    11234444444444444444331110               012223334455555555555


Q ss_pred             ccccccchhh-----ccccCCCEEEccCCeeec----ccchhhcCCccCceeecCCCcc
Q 039967          363 NIVGEIPVQL-----GKLFSLNKLILNLNQLSG----GMPLELGSLIELQYLDLSTNKL  412 (445)
Q Consensus       363 ~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~  412 (445)
                      .+.......+     ...|+|+.+.+.+|.++.    .+..+....|.|+.|+|++|.+
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            5554433332     234555555555555531    1112233445555555555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1e-11  Score=109.88  Aligned_cols=210  Identities=25%  Similarity=0.245  Sum_probs=102.7

Q ss_pred             CCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCccccccC--hhhhcccccccEEecccCccCCCccc-cccccCC
Q 039967          211 NLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNGLYSFV--PEEIRYLTSLSELELCTNHLSGVIPH-SIGNLTG  286 (445)
Q Consensus       211 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~  286 (445)
                      ++.+|+++.++++.+..... .-...+++++.|+++.|-+..+.  ......+|+|+.|+++.|.+...... ....++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34555556665555442221 12234555556666555444331  12334455555555555554421111 1123344


Q ss_pred             ccEEEcCCCcccCC-CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc
Q 039967          287 LLLLNMCENHLSGP-IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV  365 (445)
Q Consensus       287 L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  365 (445)
                      ++.|.++.|+++.. +......                   +|+++.|++.+|...........-+..|++||+++|.+.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~-------------------fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLT-------------------FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHh-------------------CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            44444444444311 1112233                   555555555555321111222233456777777777655


Q ss_pred             ccc-chhhccccCCCEEEccCCeeeccc-chh-----hcCCccCceeecCCCccccc-cCccccCCCCccEEeCCCCccc
Q 039967          366 GEI-PVQLGKLFSLNKLILNLNQLSGGM-PLE-----LGSLIELQYLDLSTNKLKSS-IPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       366 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +.. ....+.++.|+.|+++.|++.+.- |..     ...+++|++|+++.|++.+- ....+..+++|+.+.+..|+++
T Consensus       260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            322 123456677777777777765321 111     34567777777777777421 2234455667777777777766


Q ss_pred             cc
Q 039967          438 HK  439 (445)
Q Consensus       438 ~~  439 (445)
                      .+
T Consensus       340 ~e  341 (505)
T KOG3207|consen  340 KE  341 (505)
T ss_pred             cc
Confidence            43

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=2.3e-11  Score=102.58  Aligned_cols=129  Identities=31%  Similarity=0.358  Sum_probs=69.4

Q ss_pred             CCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcc
Q 039967          285 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI  364 (445)
Q Consensus       285 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  364 (445)
                      +.|+.+|+++|.++ .+.+.+.-.|.++.|+++.|.+.                   ..  ..++.+++|+.||+++|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-------------------~v--~nLa~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-------------------TV--QNLAELPQLQLLDLSGNLL  341 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-------------------ee--hhhhhcccceEeecccchh
Confidence            44555555555554 34444444455555555544432                   11  1244556666666666665


Q ss_pred             ccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccccc-CccccCCCCccEEeCCCCcccc
Q 039967          365 VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI-PKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       365 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      + ....+=.++-++++|.+++|.+...  ..++.+=+|..||+++|++.... ...+.++|+|+.+.+.+||+.+
T Consensus       342 s-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  342 A-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             H-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            5 3333334566666666666666411  23444446666667666665332 2456666777777777766653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=9.3e-11  Score=94.50  Aligned_cols=100  Identities=32%  Similarity=0.284  Sum_probs=41.5

Q ss_pred             CcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhh-ccccCCCEEEccCCeeeccc-chhhcCCccCceee
Q 039967          329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLD  406 (445)
Q Consensus       329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  406 (445)
                      +|+.|++++|.+...  +.+..++.|++|++++|.++...+ .+ ..+++|++|++++|++.+.. ...+..+++|++|+
T Consensus        43 ~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   43 KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             T--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            344444444444322  345667888888888888874433 33 35788888888888886432 24566788888888


Q ss_pred             cCCCccccccC---ccccCCCCccEEeC
Q 039967          407 LSTNKLKSSIP---KSIGNLLRLCYLDL  431 (445)
Q Consensus       407 l~~~~~~~~~~---~~~~~~~~L~~l~l  431 (445)
                      +.+|++.....   ..+..+|+|+.||-
T Consensus       120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  120 LEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ccCCcccchhhHHHHHHHHcChhheeCC
Confidence            88888874422   23467888887654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=7.2e-12  Score=107.75  Aligned_cols=233  Identities=18%  Similarity=0.174  Sum_probs=163.3

Q ss_pred             cCCCCCcEEeccCCcCCCC----CCcccCCCCCCcEEeccCcc---cCCCCCc-------cccCCCCCcEEEecCccccc
Q 039967            4 SSFPHLVHLNLSFNILFGI----IPPQIGNLSNLQYLDLGSNQ---LSGVIPL-------EIGHLNQLRILYFDVNQLHG   69 (445)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~---~~~~~~~-------~l~~~~~L~~L~l~~~~~~~   69 (445)
                      ..+..++.++|++|.+...    ....+.+.+.|+..+++.-.   ..+..|+       ++..+++|+.|++|+|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            3567889999999988754    34556667788888887642   2223333       34577899999999999885


Q ss_pred             CCCccc----ccCCCccEEEecCcccccccceEEecCCcCCCCccc-------------cccCCCCCcEEEccCCcccCC
Q 039967           70 SIPLEI----GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-------------VLGNLNSLSTMDLSQNQFSGS  132 (445)
Q Consensus        70 ~~~~~~----~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~  132 (445)
                      .-++.+    +++.              +|++|++.+|.+...--.             ..+.-+.|+++.+++|.+.+.
T Consensus       107 ~g~~~l~~ll~s~~--------------~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  107 KGIRGLEELLSSCT--------------DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             cchHHHHHHHHhcc--------------CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            444444    3333              556666666655332111             234457899999999988743


Q ss_pred             C----CccccCCCCCceEEeccCcccc----ccCccccCCCCcCEEeCCCcccccc----ccccccCCCCCcEEEccCCc
Q 039967          133 I----PLSLGNLSNLDKLYLYSNSFSG----SIPSIIGNLKSLLQLDLSENQLIGS----IPLSFGNLSSLTLMSLFNNS  200 (445)
Q Consensus       133 ~----~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~  200 (445)
                      .    ...|...+.|+.+.+..|.+..    .....+..+++|+.||+.+|.++..    +...+..++.|+.+.+++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            2    2346777999999999988752    2345678899999999999987643    34556788999999999998


Q ss_pred             cCCCCCccc-----cCCCCcCEEEccCccccCC----CCccccCCCcccEEEeeCcccc
Q 039967          201 LSGSLPPIL-----GNLKSLSALGLHINQLSGV----IPSSIGNLSSLRALYLYNNGLY  250 (445)
Q Consensus       201 ~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  250 (445)
                      +.......+     ...|.|+++.+.+|.+...    ........+.|+.|++++|.+.
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            764333222     3468999999999987532    2234455789999999999883

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=1.4e-10  Score=116.82  Aligned_cols=128  Identities=34%  Similarity=0.401  Sum_probs=68.4

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCceEEeccCc--cccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEE
Q 039967          117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS--FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLM  194 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  194 (445)
                      ...+...+.++.+. ..+.... .++|++|-+.++.  +....+..|..+|.|+.||+++|.-...+|..++.+-+||.|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            44455555555443 2222222 2356666665554  332333345556666666666655444566666666666666


Q ss_pred             EccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCc
Q 039967          195 SLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN  247 (445)
Q Consensus       195 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  247 (445)
                      ++.+..+. .+|..+.++..|.+|++..+......+.....+.+|++|.+..-
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            66666665 55666666666666666655443233333344566666665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4.3e-11  Score=106.02  Aligned_cols=207  Identities=22%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             CCCCCcEEeccCCcCCCCCC-cccCCCCCCcEEeccCcccCCCC--CccccCCCCCcEEEecCcccccCCCcc-cccCCC
Q 039967            5 SFPHLVHLNLSFNILFGIIP-PQIGNLSNLQYLDLGSNQLSGVI--PLEIGHLNQLRILYFDVNQLHGSIPLE-IGQLSL   80 (445)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~   80 (445)
                      ++.+||.+.|.++.+..... .....|++++.|+++.|-+....  .....++|+|+.|+++.|.+....... -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34556666666555443321 23444666666666666443211  122235566666666666544221111 124455


Q ss_pred             ccEEEecCcccccccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccC-
Q 039967           81 INVLALCHNYFVCNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP-  158 (445)
Q Consensus        81 L~~l~l~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-  158 (445)
                      |+.+.+++|              .++. ++...+..+|+|+.|++.+|...........-+..|+.|++++|.+. ..+ 
T Consensus       199 lK~L~l~~C--------------Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~  263 (505)
T KOG3207|consen  199 LKQLVLNSC--------------GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQ  263 (505)
T ss_pred             hheEEeccC--------------CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccc
Confidence            555555554              4332 23334555666777777666321122223344456666677666654 222 


Q ss_pred             -ccccCCCCcCEEeCCCcccccc-cccc-----ccCCCCCcEEEccCCccCC-CCCccccCCCCcCEEEccCcccc
Q 039967          159 -SIIGNLKSLLQLDLSENQLIGS-IPLS-----FGNLSSLTLMSLFNNSLSG-SLPPILGNLKSLSALGLHINQLS  226 (445)
Q Consensus       159 -~~~~~l~~L~~L~l~~~~~~~~-~~~~-----l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~  226 (445)
                       ...+.++.|+.|+++.|.+..+ .|+.     ...+++|+.|.+..|.+.+ .....+..+++|..+.+..+.+.
T Consensus       264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence             3345666667777666665432 2221     2456677777777776631 11122344566666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=6e-11  Score=100.09  Aligned_cols=205  Identities=20%  Similarity=0.147  Sum_probs=126.3

Q ss_pred             cccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCc-cccccChhhhccc
Q 039967          182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN-GLYSFVPEEIRYL  260 (445)
Q Consensus       182 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~  260 (445)
                      |-.+..+.+|+.+.++.+.-..+ -.....-|.|+++.+.+..++...  .+-..+.+...-.... ...+........+
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~--~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVP--SLLPETILADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             ccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccc--cccchhhhcCccCCCCCccCCceEEecchH
Confidence            33344556777777776654321 122223477777777665543211  1111111111100000 0111111223345


Q ss_pred             ccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCcc
Q 039967          261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNI  340 (445)
Q Consensus       261 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~  340 (445)
                      +.|+++++++|.+. ...+.+.-.+.++.|+++.|++...  +.++.+++|+.|++++|.+.                  
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls------------------  342 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA------------------  342 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH------------------
Confidence            67889999999887 4456777889999999999988732  22677788888888887664                  


Q ss_pred             ccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCcccc
Q 039967          341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKS  414 (445)
Q Consensus       341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~  414 (445)
                        .+..+-..+.+++.|.+++|.+.  ..+++.++-+|..|++++|++.... ...++++|.|+.+.+.+|++..
T Consensus       343 --~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  343 --ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             --hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence              33345556678888888888875  2346778888888888888886332 2467888888888888888863

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=4e-10  Score=106.16  Aligned_cols=175  Identities=37%  Similarity=0.546  Sum_probs=80.2

Q ss_pred             CcccEEEeeCccccccChhhhcccc-cccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceee
Q 039967          237 SSLRALYLYNNGLYSFVPEEIRYLT-SLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVL  315 (445)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  315 (445)
                      +.++.+++.++.+... +....... +|+.|+++++.+.. .+..+..++.|+.|++++|++. .++......+.|+.++
T Consensus       116 ~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccC-ccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            4455555555555442 22222332 55566665555542 2234455556666666666555 3333333455555555


Q ss_pred             ccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh
Q 039967          316 LNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE  395 (445)
Q Consensus       316 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  395 (445)
                      +++|++...                    +........|+++.+++|.+. ..+..+.++..+..+.+.++++. ..+..
T Consensus       193 ls~N~i~~l--------------------~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         193 LSGNKISDL--------------------PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             ccCCccccC--------------------chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence            555555422                    222122233444444444322 23333444444444444444443 22334


Q ss_pred             hcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967          396 LGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       396 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      ++.+++++.|++++|.++....  +..+.+++.++++++.++.
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             hccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence            4444445555555555543222  4444555555555554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.99  E-value=3.1e-10  Score=114.34  Aligned_cols=106  Identities=33%  Similarity=0.425  Sum_probs=71.8

Q ss_pred             ccceEEecCCc--CCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEe
Q 039967           94 NLANFYLNNNS--LFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD  171 (445)
Q Consensus        94 ~L~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  171 (445)
                      +|++|-+.++.  +.......|..++.|++||+++|.-...+|+.++.+-+|++|++.++.+. .+|..+.+++.|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45566665554  33344444677788888888876554467777887888888888887777 6777777888888888


Q ss_pred             CCCccccccccccccCCCCCcEEEccCCc
Q 039967          172 LSENQLIGSIPLSFGNLSSLTLMSLFNNS  200 (445)
Q Consensus       172 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  200 (445)
                      +..+......+.....+++||+|.+....
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccc
Confidence            77766443444545557777777776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.8e-09  Score=71.45  Aligned_cols=59  Identities=44%  Similarity=0.540  Sum_probs=32.9

Q ss_pred             CCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCc
Q 039967          377 SLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ  435 (445)
Q Consensus       377 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  435 (445)
                      +|++|++++|++....+..|.++++|++|++++|++....+.+|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555553333455555555555555555555555555555566666555554

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.6e-09  Score=87.35  Aligned_cols=106  Identities=31%  Similarity=0.356  Sum_probs=23.5

Q ss_pred             CCCCCcEEEccCCcccCCCCcccc-CCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccc-cCCCCCc
Q 039967          115 NLNSLSTMDLSQNQFSGSIPLSLG-NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF-GNLSSLT  192 (445)
Q Consensus       115 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~  192 (445)
                      +...++.|++.++.++.+ . .++ .+.+|+.|++++|.+.. + ..+..+++|++|++++|.+... ...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccc-c-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            334455566666655522 1 232 34555556666555542 1 2344555555555555555432 2222 2355555


Q ss_pred             EEEccCCccCCCCC-ccccCCCCcCEEEccCccc
Q 039967          193 LMSLFNNSLSGSLP-PILGNLKSLSALGLHINQL  225 (445)
Q Consensus       193 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  225 (445)
                      +|.+++|.+..... ..+..+++|+.|++.+|++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            55555555542111 2233444444444444444

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=5.1e-09  Score=103.38  Aligned_cols=112  Identities=31%  Similarity=0.501  Sum_probs=88.9

Q ss_pred             cceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCC
Q 039967          330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST  409 (445)
Q Consensus       330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  409 (445)
                      ++.|++.++.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67778888888777777888888888888888888878888888888888888888888878888888888888888888


Q ss_pred             CccccccCccccC-CCCccEEeCCCCcccccCC
Q 039967          410 NKLKSSIPKSIGN-LLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       410 ~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~  441 (445)
                      |++.+..|..+.. ...+..+++.+|+.....|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            8888777777754 3466677888777654443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=3.1e-09  Score=70.32  Aligned_cols=61  Identities=39%  Similarity=0.528  Sum_probs=45.9

Q ss_pred             CCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967          352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL  412 (445)
Q Consensus       352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  412 (445)
                      |+|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677788888877766666777788888888888877756666777888888888887764

...

>PLN03150 hypothetical protein; Provisional

Probab=98.84  E-value=3.9e-09  Score=104.15  Aligned_cols=92  Identities=35%  Similarity=0.545  Sum_probs=87.2

Q ss_pred             CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS  432 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  432 (445)
                      .++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+..|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCC
Q 039967          433 NNQFGHKILVEL  444 (445)
Q Consensus       433 ~~~~~~~~~~~~  444 (445)
                      +|+++|++|..+
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            999999999754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.81  E-value=6.1e-09  Score=98.13  Aligned_cols=180  Identities=39%  Similarity=0.550  Sum_probs=105.4

Q ss_pred             ccCCCCCcEEEccCCcccCCCCccccCCC-CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCC
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLS-NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSL  191 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  191 (445)
                      +...+.++.+++..+.++ ..+....... +|+.++++++.+. ..+..+..++.|+.|++++|++.. .+......+.|
T Consensus       112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhh
Confidence            344466777777777776 3444455553 7777777777766 444556677777777777777663 34433366777


Q ss_pred             cEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccC
Q 039967          192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN  271 (445)
Q Consensus       192 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  271 (445)
                      +.|.++++.+. ..|........|+++.++++... .....+....++..+.+.++.+.. .+..+..++.+++|++++|
T Consensus       189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccc
Confidence            77777777776 34443334445677777666422 223344555566666655555443 1344555556666666666


Q ss_pred             ccCCCccccccccCCccEEEcCCCcccCC
Q 039967          272 HLSGVIPHSIGNLTGLLLLNMCENHLSGP  300 (445)
Q Consensus       272 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  300 (445)
                      .+.....  +....+++.++++++.+...
T Consensus       266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         266 QISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccccc--ccccCccCEEeccCcccccc
Confidence            6653332  55556666666666655533

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=2.7e-10  Score=104.38  Aligned_cols=170  Identities=36%  Similarity=0.517  Sum_probs=96.5

Q ss_pred             cEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCc
Q 039967          240 RALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN  319 (445)
Q Consensus       240 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  319 (445)
                      ...+++.|.+.. .+...+.+..|+.+.+..|.+. ..+..+..+..|++++++.|++. ..|..++.++ |+.+.+++|
T Consensus        78 ~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            445555565544 4455555666677777666665 45556667777777777777766 4454444433 555666665


Q ss_pred             cccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCC
Q 039967          320 NLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL  399 (445)
Q Consensus       320 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  399 (445)
                      ++.                    .+|..++..+.|..||.+.|.+. ..|..++.+.+|+.|.+..|++. .+|+.++ .
T Consensus       154 kl~--------------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~  210 (722)
T KOG0532|consen  154 KLT--------------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-S  210 (722)
T ss_pred             ccc--------------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-C
Confidence            554                    34444445555555555555554 44445555555555555555555 4444444 2


Q ss_pred             ccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       400 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      -.|..||++.|+++ .+|..|.++..|++|-+.+||+.
T Consensus       211 LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  211 LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            34555555555554 45555555555555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.71  E-value=4.5e-10  Score=102.92  Aligned_cols=172  Identities=31%  Similarity=0.463  Sum_probs=108.2

Q ss_pred             CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEec
Q 039967            8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALC   87 (445)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   87 (445)
                      .-..++++.|.+..+ |..+..+-.|+.+.++.|.+. ..|.+++++..|++++++.|++. ..|..+-.++        
T Consensus        76 dt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--------  144 (722)
T KOG0532|consen   76 DTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--------  144 (722)
T ss_pred             chhhhhccccccccC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--------
Confidence            344556666666655 334555666777777777776 66667777777777777777765 4555554444        


Q ss_pred             CcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCc
Q 039967           88 HNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL  167 (445)
Q Consensus        88 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  167 (445)
                             |+.+.+++|.+. ..|..++..+.|.+||.+.|++. ..|..+..+..|+.+++..|.+. .+|..+. .-.|
T Consensus       145 -------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpL  213 (722)
T KOG0532|consen  145 -------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPL  213 (722)
T ss_pred             -------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCce
Confidence                   344444444433 45555666667777777777666 45666666677777777666665 4455454 3456


Q ss_pred             CEEeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967          168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS  202 (445)
Q Consensus       168 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (445)
                      ..||++.|++. .+|..|..++.|++|.+.+|.+.
T Consensus       214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             eeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            66777776665 56666677777777777776665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=8.6e-10  Score=93.14  Aligned_cols=172  Identities=20%  Similarity=0.159  Sum_probs=100.7

Q ss_pred             cccEEEeeCcccccc-ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCc-ccCC-CCccccccCcccee
Q 039967          238 SLRALYLYNNGLYSF-VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH-LSGP-IPKSFKNLTSVERV  314 (445)
Q Consensus       238 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L  314 (445)
                      .|+.++++.-.++.. ....+..|.+|+.|.+.++.+.+.....++.-.+|+.++++.+. ++.. ..-.+..|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            455555555444321 22344555566666666665554444445555566666666552 2211 12234556666666


Q ss_pred             eccCcccccccc-------CCCcceEEcccCccc---cCCCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEc
Q 039967          315 LLNQNNLSGKVN-------VPKLGTFIISVNNIS---ESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLIL  383 (445)
Q Consensus       315 ~l~~~~~~~~~~-------~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  383 (445)
                      ++++|.+.....       -+.|..|+++++.-.   .....-...||+|.+||+++|. ++......|.+++.|++|++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            666665432211       335556666654321   1122234578999999999886 55555567788999999999


Q ss_pred             cCCeeecccch---hhcCCccCceeecCCCc
Q 039967          384 NLNQLSGGMPL---ELGSLIELQYLDLSTNK  411 (445)
Q Consensus       384 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~~  411 (445)
                      +.|-.  ..|+   .+...|+|.+||+.||-
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            99865  3343   45778999999998874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=3.1e-08  Score=83.91  Aligned_cols=196  Identities=22%  Similarity=0.136  Sum_probs=106.0

Q ss_pred             CCcCEEEccCccccCC--CCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccC-CCccccccccCCccE
Q 039967          213 KSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS-GVIPHSIGNLTGLLL  289 (445)
Q Consensus       213 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~  289 (445)
                      ..++++++.+|.+++.  ....+..+|.|++|+++.|++...+...-....+|+.+.+.+..+. ......+..++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            4444455555544321  1112334455555555555544322111112334555555444332 111123344455555


Q ss_pred             EEcCCCcccCCCCc---cccccCccceeeccCccccccc-------cCCCcceEEcccCccccC-CCccccCCCCCcEEE
Q 039967          290 LNMCENHLSGPIPK---SFKNLTSVERVLLNQNNLSGKV-------NVPKLGTFIISVNNISES-IPPEIGDSPKLQVLD  358 (445)
Q Consensus       290 L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~-------~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~  358 (445)
                      +.++.|.......+   .-.-.+.+++++..+|....+.       .+|++..+.++.|++... ..+.....|.+..|.
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            55555532211110   1112235666666666543221       288999999999887644 344566678888899


Q ss_pred             CCCCcccccc-chhhccccCCCEEEccCCeeecccch------hhcCCccCceeecC
Q 039967          359 LSSNNIVGEI-PVQLGKLFSLNKLILNLNQLSGGMPL------ELGSLIELQYLDLS  408 (445)
Q Consensus       359 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~  408 (445)
                      ++.+.+.+.. ...+.+++.|..|.++++++.+.+..      -++.++++++|+=+
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            9998887542 25678899999999999988543322      14567888887644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.47  E-value=1.7e-09  Score=95.53  Aligned_cols=289  Identities=17%  Similarity=0.119  Sum_probs=146.0

Q ss_pred             CCCceEEeccCcccc--ccCccccCCCCcCEEeCCCccccc-cccccc-cCCCCCcEEEccCCc-cCCCC-CccccCCCC
Q 039967          141 SNLDKLYLYSNSFSG--SIPSIIGNLKSLLQLDLSENQLIG-SIPLSF-GNLSSLTLMSLFNNS-LSGSL-PPILGNLKS  214 (445)
Q Consensus       141 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l-~~l~~L~~L~l~~~~-~~~~~-~~~~~~l~~  214 (445)
                      ..||.+.+.++.-..  ..-....++|++++|++.+|.... ..-..+ ..+++|+++.+..|. ++... ......+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            366777777765321  122234567888888888876321 111111 456778888887743 33221 123346788


Q ss_pred             cCEEEccCccccCC--CCccccCCCcccEEEeeCcccccc--ChhhhcccccccEEecccCccC-CCcc-ccccccCCcc
Q 039967          215 LSALGLHINQLSGV--IPSSIGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLSELELCTNHLS-GVIP-HSIGNLTGLL  288 (445)
Q Consensus       215 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~-~~~~-~~l~~~~~L~  288 (445)
                      |+.+++++|.....  ...-.+++..++.+...||.-...  ....-..+..+..+++.+|... +... ..-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            88888888764211  112334566667776666643221  1111233445666666666332 2211 1123456778


Q ss_pred             EEEcCCCcc-cCCCCccc-cccCccceeeccCcc-cccc------ccCCCcceEEcccCccccC--CCccccCCCCCcEE
Q 039967          289 LLNMCENHL-SGPIPKSF-KNLTSVERVLLNQNN-LSGK------VNVPKLGTFIISVNNISES--IPPEIGDSPKLQVL  357 (445)
Q Consensus       289 ~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~-~~~~------~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L  357 (445)
                      +++.+++.- .+.....+ .++.+|+.+.+.+|+ +++.      .+++.|+.+++..+.....  +...-.+|+.|+++
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            888887743 32222333 467788888887775 2211      1255555555555443221  11122355666666


Q ss_pred             ECCCCc-cccccchhh----ccccCCCEEEccCCeee-cccchhhcCCccCceeecCCCc-cccccCccc-cCCCCccEE
Q 039967          358 DLSSNN-IVGEIPVQL----GKLFSLNKLILNLNQLS-GGMPLELGSLIELQYLDLSTNK-LKSSIPKSI-GNLLRLCYL  429 (445)
Q Consensus       358 ~l~~~~-~~~~~~~~~----~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~l  429 (445)
                      .++.|. +++.....+    .....++.+.+++|+.. +...+.+..+++|+.+++.+|+ +++.....| .++|++++.
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            666654 333311122    23455666666666553 1222344555666666666664 222333334 245555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.44  E-value=3.5e-08  Score=93.17  Aligned_cols=127  Identities=31%  Similarity=0.350  Sum_probs=58.8

Q ss_pred             CCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEE
Q 039967          140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALG  219 (445)
Q Consensus       140 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  219 (445)
                      +..++.+.+..+.+. ..-..+..+.+|+.+++.++.+..+. ..+..+++|++|++++|.|+..  ..+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            344444455555544 22233445566666666666654321 1144555666666666655532  1233444455555


Q ss_pred             ccCccccCCCCccccCCCcccEEEeeCccccccCh-hhhcccccccEEecccCcc
Q 039967          220 LHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVP-EEIRYLTSLSELELCTNHL  273 (445)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  273 (445)
                      +.+|.+....  .+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+
T Consensus       147 l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  147 LSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             eccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            5555554221  22234455555555554444322 1 23334444444444433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.7e-09  Score=90.17  Aligned_cols=180  Identities=20%  Similarity=0.193  Sum_probs=115.5

Q ss_pred             CCcEEeccCcccCC-CCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCcc
Q 039967           32 NLQYLDLGSNQLSG-VIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP  110 (445)
Q Consensus        32 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~  110 (445)
                      +|+.++++...|+. .....+++|++|+.|.+.+..+.+.+...+++..+|..++++.+...   +         .....
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~---t---------~n~~~  253 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF---T---------ENALQ  253 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc---c---------hhHHH
Confidence            47777777766652 22234567777777777777776666666777776666666554321   0         11233


Q ss_pred             ccccCCCCCcEEEccCCcccCCCC-ccccCC-CCCceEEeccCccc---cccCccccCCCCcCEEeCCCccc-ccccccc
Q 039967          111 LVLGNLNSLSTMDLSQNQFSGSIP-LSLGNL-SNLDKLYLYSNSFS---GSIPSIIGNLKSLLQLDLSENQL-IGSIPLS  184 (445)
Q Consensus       111 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l-~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~  184 (445)
                      ..+..|..|..|+++||....... ..+... ++|..|+++|+.-.   .....-...+|+|-.||+++|-. .......
T Consensus       254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~  333 (419)
T KOG2120|consen  254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  333 (419)
T ss_pred             HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence            457788899999999987653322 122222 68888888887521   11222345789999999998753 3333445


Q ss_pred             ccCCCCCcEEEccCCccCCCCCcc---ccCCCCcCEEEccCccc
Q 039967          185 FGNLSSLTLMSLFNNSLSGSLPPI---LGNLKSLSALGLHINQL  225 (445)
Q Consensus       185 l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~  225 (445)
                      |.+++.|++|.++.|...  .|..   +.+.|.|..|++.++--
T Consensus       334 ~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence            678899999999988653  3332   45678899999887643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=6.6e-09  Score=98.16  Aligned_cols=124  Identities=28%  Similarity=0.240  Sum_probs=80.2

Q ss_pred             CccEEEcCCCcccCCCCccccccCccceeeccCcccccccc---CCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967          286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN---VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN  362 (445)
Q Consensus       286 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  362 (445)
                      .|.+.++++|.+. .+...+.-+++++.|++++|++.+.-.   ++.|++|++++|.+.-..-....+|. |..|.++||
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            4566666666665 455566666777777777777654322   66666777777666544444445555 888888888


Q ss_pred             ccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccc
Q 039967          363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      .++..  .+++++.+|+.|++++|-+.+.- -+.+..+..|++|.|.||++-
T Consensus       243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            77633  35677888888888887665321 134456667888888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.35  E-value=4.3e-08  Score=92.54  Aligned_cols=247  Identities=26%  Similarity=0.290  Sum_probs=132.3

Q ss_pred             CCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEE
Q 039967          163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL  242 (445)
Q Consensus       163 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  242 (445)
                      .+..++.+.+..+.+.. ....+..++++..+.+.++.+... ...+..+++|+.+++++|.+....  .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhh
Confidence            34555555566555442 223355666677777777766532 222445566666666666654322  33444455666


Q ss_pred             EeeCccccccChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccc
Q 039967          243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL  321 (445)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  321 (445)
                      ++.+|.+..+  ..+..++.|+.+++.+|.+..... . ...+.+++.+.+++|.+...  ..+..+..+..+.+.    
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~----  216 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLL----  216 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcc----
Confidence            6666655442  122234455555555555442222 1 23444444455555444311  111122222222333    


Q ss_pred             cccccCCCcceEEcccCccccCCCccccCCC--CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCC
Q 039967          322 SGKVNVPKLGTFIISVNNISESIPPEIGDSP--KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL  399 (445)
Q Consensus       322 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  399 (445)
                                     .+.+...  ..+....  +|+.++++++++. ..+..+..+..+..+++.++.+...  ..+...
T Consensus       217 ---------------~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~  276 (414)
T KOG0531|consen  217 ---------------DNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERL  276 (414)
T ss_pred             ---------------cccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cccccc
Confidence                           3333211  1122223  3899999999987 3335677788899999998887532  233445


Q ss_pred             ccCceeecCCCccccc---cCcc-ccCCCCccEEeCCCCcccccCCC
Q 039967          400 IELQYLDLSTNKLKSS---IPKS-IGNLLRLCYLDLSNNQFGHKILV  442 (445)
Q Consensus       400 ~~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~l~l~~~~~~~~~~~  442 (445)
                      +.+..+...++.+...   .... ....+.++.+.+.+++.-+..+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             chHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence            6777777777776522   1222 45678899999999988766553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=2.6e-07  Score=78.44  Aligned_cols=198  Identities=21%  Similarity=0.197  Sum_probs=120.3

Q ss_pred             ccceEEecCCcCCC--CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc-cCccccCCCCcCEE
Q 039967           94 NLANFYLNNNSLFN--SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS-IPSIIGNLKSLLQL  170 (445)
Q Consensus        94 ~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L  170 (445)
                      .++++++.+|.++.  .+...+.++|.|+.|+++.|.+...+...-....+|+.+.+.++.+... ....+..+|.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            56667777777653  3444678899999999999988744332224567999999999887532 33456678888999


Q ss_pred             eCCCccccc--ccccccc-CCCCCcEEEccCCccCC--CCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEe
Q 039967          171 DLSENQLIG--SIPLSFG-NLSSLTLMSLFNNSLSG--SLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYL  244 (445)
Q Consensus       171 ~l~~~~~~~--~~~~~l~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l  244 (445)
                      .++.|.+..  .-.+... .-+.++++.+..|....  ..-..-.-+|++..+.+..|++..... ..+..++.+..|.+
T Consensus       152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL  231 (418)
T KOG2982|consen  152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL  231 (418)
T ss_pred             hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence            888885321  1111111 22466666666664320  001111234777777777776653322 23445566777888


Q ss_pred             eCcccccc-ChhhhcccccccEEecccCccCCCccc------cccccCCccEEE
Q 039967          245 YNNGLYSF-VPEEIRYLTSLSELELCTNHLSGVIPH------SIGNLTGLLLLN  291 (445)
Q Consensus       245 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~  291 (445)
                      +.+++.++ ..+.+..++.|..|.+..+.+.+....      .++.+++++.|+
T Consensus       232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             cccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            88877664 235667788888888887766532211      124455566554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.28  E-value=1.5e-07  Score=78.78  Aligned_cols=229  Identities=19%  Similarity=0.163  Sum_probs=129.0

Q ss_pred             ccCCCCCcEEEccCCcccCCCCc----cccCCCCCceEEeccCcc---c-------cccCccccCCCCcCEEeCCCcccc
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPL----SLGNLSNLDKLYLYSNSF---S-------GSIPSIIGNLKSLLQLDLSENQLI  178 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~---~-------~~~~~~~~~l~~L~~L~l~~~~~~  178 (445)
                      +..+..++.+++++|.+.+....    .+..-.+|+..++++--.   .       ..+..++..||+|+.+++++|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            45578888999999988754333    345557787777765311   0       134455678999999999999876


Q ss_pred             cccccc----ccCCCCCcEEEccCCccCCCCCccc-------------cCCCCcCEEEccCccccCCC----CccccCCC
Q 039967          179 GSIPLS----FGNLSSLTLMSLFNNSLSGSLPPIL-------------GNLKSLSALGLHINQLSGVI----PSSIGNLS  237 (445)
Q Consensus       179 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~----~~~~~~~~  237 (445)
                      ...|+.    +.+.+.|++|.+++|.........+             ..-|.|+++....|.+....    ...+....
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            555543    3566788888888886542222111             23355566555555543111    11222233


Q ss_pred             cccEEEeeCccccccChhhhcccccccEEecccCccCCCccc-----cccccCCccEEEcCCCcccCCCC----cccccc
Q 039967          238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPH-----SIGNLTGLLLLNMCENHLSGPIP----KSFKNL  308 (445)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~  308 (445)
                      .|+.+.+..|.+                        ...+..     .+..+++|+.|++.+|.++...+    .+++.+
T Consensus       186 ~lk~vki~qNgI------------------------rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W  241 (388)
T COG5238         186 NLKEVKIQQNGI------------------------RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW  241 (388)
T ss_pred             CceeEEeeecCc------------------------CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence            455555555444                        322111     12334566666666665543322    344556


Q ss_pred             CccceeeccCcccccccc-----------CCCcceEEcccCccccCCCcc------c-cCCCCCcEEECCCCccc
Q 039967          309 TSVERVLLNQNNLSGKVN-----------VPKLGTFIISVNNISESIPPE------I-GDSPKLQVLDLSSNNIV  365 (445)
Q Consensus       309 ~~L~~L~l~~~~~~~~~~-----------~~~L~~L~l~~~~~~~~~~~~------~-~~~~~L~~L~l~~~~~~  365 (445)
                      +.|++|.+.+|-++....           .|+|..|...++..-......      . ..+|-|..+.+.+|.+.
T Consensus       242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            667777777776653322           666777766666553221111      1 24566666777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.12  E-value=5.4e-08  Score=92.23  Aligned_cols=181  Identities=28%  Similarity=0.291  Sum_probs=116.6

Q ss_pred             cccccCCCCCcEEEccCCcccCCCCccccCC-CCCceEEeccCc--cccccCc---cccC---CCCcCEEeCCCcccccc
Q 039967          110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNL-SNLDKLYLYSNS--FSGSIPS---IIGN---LKSLLQLDLSENQLIGS  180 (445)
Q Consensus       110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~--~~~~~~~---~~~~---l~~L~~L~l~~~~~~~~  180 (445)
                      |-.+..+.+|++|.+.++++..  ...+..+ .+|++|...+.-  +.+.+..   .+.+   ..+|.+.+++.|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            4456777888888888888763  1223222 355555433221  0001111   0111   235777777777765 5


Q ss_pred             ccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhccc
Q 039967          181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL  260 (445)
Q Consensus       181 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  260 (445)
                      .+..++-++.++.|++++|.++...  .+..+++|++||+++|.+.........++. |+.|.+.+|.++..  .-+.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence            6677788888888888888887442  677888888888888888755444444554 88888888887663  235577


Q ss_pred             ccccEEecccCccCCC-ccccccccCCccEEEcCCCccc
Q 039967          261 TSLSELELCTNHLSGV-IPHSIGNLTGLLLLNMCENHLS  298 (445)
Q Consensus       261 ~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~  298 (445)
                      .+|+.||++.|-+.+. ....+..+..|+.|.+.||++.
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7888888888766532 2234566677888888888765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.03  E-value=1.2e-07  Score=84.12  Aligned_cols=291  Identities=15%  Similarity=0.073  Sum_probs=160.7

Q ss_pred             CCCcEEEccCCcccCC--CCccccCCCCCceEEeccCcc-cccc-CccccCCCCcCEEeCCCcc-ccccccc-cccCCCC
Q 039967          117 NSLSTMDLSQNQFSGS--IPLSLGNLSNLDKLYLYSNSF-SGSI-PSIIGNLKSLLQLDLSENQ-LIGSIPL-SFGNLSS  190 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~-~~~~-~~~~~~l~~L~~L~l~~~~-~~~~~~~-~l~~l~~  190 (445)
                      ..|+.|.++++.-...  .-..-..+|+++.|.+.++.. ++.. ...-.+|++|+++++..|. +++..-. .-..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3577777777653211  111235667777777776652 1111 1122357778888777755 2221111 1245677


Q ss_pred             CcEEEccCCccCC--CCCccccCCCCcCEEEccCccccCC--CCccccCCCcccEEEeeCcccccc--Chhhhccccccc
Q 039967          191 LTLMSLFNNSLSG--SLPPILGNLKSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLS  264 (445)
Q Consensus       191 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~  264 (445)
                      |+++.++.++-..  -......++..++.+...+|.-...  ....-+.+.-+..+++..|.....  ....-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            7777777665321  1112233444455554444432100  000112233445555555533221  112334566778


Q ss_pred             EEecccCccC-CCccccc-cccCCccEEEcCCCcc-cCCCCccc-cccCccceeeccCcccccc-------ccCCCcceE
Q 039967          265 ELELCTNHLS-GVIPHSI-GNLTGLLLLNMCENHL-SGPIPKSF-KNLTSVERVLLNQNNLSGK-------VNVPKLGTF  333 (445)
Q Consensus       265 ~L~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~-------~~~~~L~~L  333 (445)
                      .+..+++... ......+ ....+|+.+.++.|+. ++.-...+ .+++.|+.+++.++..+..       ..++.++.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            8877776432 2222223 4457888888888753 22211222 3677888888887764422       237888888


Q ss_pred             EcccCccccCC-----CccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccc--hhhcCCccCcee
Q 039967          334 IISVNNISESI-----PPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMP--LELGSLIELQYL  405 (445)
Q Consensus       334 ~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L  405 (445)
                      .+++|......     ...-..+..|+.+.+++|+.+ +.....+.+|+.|+.+.+-+|+....-+  ..-..+|++++.
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            88877654332     223356788999999999855 4455677889999999999997642222  223467787776


Q ss_pred             ec
Q 039967          406 DL  407 (445)
Q Consensus       406 ~l  407 (445)
                      .+
T Consensus       458 a~  459 (483)
T KOG4341|consen  458 AY  459 (483)
T ss_pred             hh
Confidence            55

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.99  E-value=2.4e-05  Score=60.87  Aligned_cols=60  Identities=17%  Similarity=0.234  Sum_probs=25.8

Q ss_pred             CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEec
Q 039967            2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD   63 (445)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~   63 (445)
                      +|..+++|+.+.+.. .+..+....|..+++|+.+.+..+ +......+|.++++++.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            555566666666553 344444555555555666655543 433444455555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.98  E-value=1.5e-05  Score=64.15  Aligned_cols=88  Identities=27%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC---ccccC
Q 039967          347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP---KSIGN  422 (445)
Q Consensus       347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~  422 (445)
                      .+..++.|.+|.+.+|.|+...|..-.-++.|+.|.+.+|.+.... ...+..+|.|++|.+-+|++....-   -.+..
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence            4556677777777777777655555455677777777777664211 2345567777777777777764332   23456


Q ss_pred             CCCccEEeCCCC
Q 039967          423 LLRLCYLDLSNN  434 (445)
Q Consensus       423 ~~~L~~l~l~~~  434 (445)
                      +|+|+.||+++-
T Consensus       139 lp~l~~LDF~kV  150 (233)
T KOG1644|consen  139 LPSLRTLDFQKV  150 (233)
T ss_pred             cCcceEeehhhh
Confidence            777777776653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=8e-05  Score=68.14  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=15.7

Q ss_pred             CCCcEEECCCCccccccchhhccccCCCEEEccCC
Q 039967          352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN  386 (445)
Q Consensus       352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  386 (445)
                      ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45666666655543 2332222  45555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.87  E-value=5.7e-06  Score=69.60  Aligned_cols=207  Identities=18%  Similarity=0.123  Sum_probs=131.7

Q ss_pred             CCCCcEEeccCCcCCCCC----CcccCCCCCCcEEeccCccc---CCCCC-------ccccCCCCCcEEEecCcccccCC
Q 039967            6 FPHLVHLNLSFNILFGII----PPQIGNLSNLQYLDLGSNQL---SGVIP-------LEIGHLNQLRILYFDVNQLHGSI   71 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~~~-------~~l~~~~~L~~L~l~~~~~~~~~   71 (445)
                      +..+..++|++|.|....    ...+.+-++|+..+++.-..   .+..+       .++.+||+|+.+++|+|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            556788888888876553    34455566788877765322   11222       33457888888888888887655


Q ss_pred             Cccc----ccCCCccEEEecCcccccccceEEecCCcCCCCccc-------------cccCCCCCcEEEccCCcccCCCC
Q 039967           72 PLEI----GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-------------VLGNLNSLSTMDLSQNQFSGSIP  134 (445)
Q Consensus        72 ~~~~----~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~  134 (445)
                      |..+    ++-.              ++.+|++.+|.+-...-.             ..+.-|.|+++.+..|.+.....
T Consensus       109 ~e~L~d~is~~t--------------~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238         109 PEELGDLISSST--------------DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             chHHHHHHhcCC--------------CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence            5543    3344              445555555543221111             22344789999999998863221


Q ss_pred             ----ccccCCCCCceEEeccCccccc-----cCccccCCCCcCEEeCCCcccccc----ccccccCCCCCcEEEccCCcc
Q 039967          135 ----LSLGNLSNLDKLYLYSNSFSGS-----IPSIIGNLKSLLQLDLSENQLIGS----IPLSFGNLSSLTLMSLFNNSL  201 (445)
Q Consensus       135 ----~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~  201 (445)
                          ..+..-.+|+.+.+..|.|...     ....+..+.+|+.||+.+|.++..    +..++...+.|+.|.++.|-.
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence                1244447999999999987522     122345789999999999987643    334456677899999999876


Q ss_pred             CCCCCcc----c--cCCCCcCEEEccCcccc
Q 039967          202 SGSLPPI----L--GNLKSLSALGLHINQLS  226 (445)
Q Consensus       202 ~~~~~~~----~--~~l~~L~~L~l~~~~~~  226 (445)
                      .......    +  ...|+|..|.++++...
T Consensus       255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            5432221    1  13488899988888654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.6e-05  Score=48.00  Aligned_cols=35  Identities=40%  Similarity=0.583  Sum_probs=13.2

Q ss_pred             CCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       378 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      |++|++++|++. .++..++.+++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444443 22323344444444444444433

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.82  E-value=1.3e-05  Score=48.28  Aligned_cols=38  Identities=39%  Similarity=0.576  Sum_probs=31.7

Q ss_pred             ccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967          400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       400 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      ++|++|++++|++++ .+..+.++++|++|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            479999999999995 45569999999999999999984

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=4.3e-05  Score=61.60  Aligned_cols=83  Identities=24%  Similarity=0.157  Sum_probs=37.4

Q ss_pred             CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCC-CccccCCCCcCEEEc
Q 039967          142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL-PPILGNLKSLSALGL  220 (445)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l  220 (445)
                      +...+++.+|.+.  ....|..++.|.+|.+..|+++.+-|.--..+++|+.|.+.+|.+.... ...+..+|.|+.|.+
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            3444555555443  1233445555555555555555443332234445555555555443210 112334455555555


Q ss_pred             cCcccc
Q 039967          221 HINQLS  226 (445)
Q Consensus       221 ~~~~~~  226 (445)
                      -+|++.
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            544443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.77  E-value=1.3e-06  Score=65.49  Aligned_cols=59  Identities=20%  Similarity=0.185  Sum_probs=35.4

Q ss_pred             CcEEeccCCcCCCC--CCcccCCCCCCcEEeccCcccCCCCCccc-cCCCCCcEEEecCcccc
Q 039967            9 LVHLNLSFNILFGI--IPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRILYFDVNQLH   68 (445)
Q Consensus         9 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~   68 (445)
                      +-.++|+.|.+.-+  ...++....+|+.+++++|.+.+. |..| .+.+..+.+++++|.+.
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis   90 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS   90 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh
Confidence            34556666644322  134455566777777887777733 3344 34567777777777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=8.4e-05  Score=68.00  Aligned_cols=73  Identities=10%  Similarity=0.118  Sum_probs=47.7

Q ss_pred             ccccCCccEEEcCCCcccCCCCccccccCccceeeccCccc-cccc--cCCCcceEEcccCccccCCCccccCCCCCcEE
Q 039967          281 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL-SGKV--NVPKLGTFIISVNNISESIPPEIGDSPKLQVL  357 (445)
Q Consensus       281 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  357 (445)
                      +..+..++.|++++|.+. .+|.   -.++|+.|.+++|.- ...+  ..++|+.|++.+|.....+|      ++|+.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP------~sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP------ESVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc------cccceE
Confidence            344688999999999777 4452   234699999988643 2221  24589999999884322333      457777


Q ss_pred             ECCCCc
Q 039967          358 DLSSNN  363 (445)
Q Consensus       358 ~l~~~~  363 (445)
                      +++++.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            776554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.69  E-value=0.00012  Score=56.92  Aligned_cols=9  Identities=11%  Similarity=0.335  Sum_probs=3.3

Q ss_pred             CCCcCEEEc
Q 039967          212 LKSLSALGL  220 (445)
Q Consensus       212 l~~L~~L~l  220 (445)
                      +++++.+.+
T Consensus        80 ~~~l~~i~~   88 (129)
T PF13306_consen   80 CTNLKNIDI   88 (129)
T ss_dssp             -TTECEEEE
T ss_pred             ccccccccc
Confidence            344444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=1.4e-05  Score=79.14  Aligned_cols=107  Identities=22%  Similarity=0.283  Sum_probs=59.4

Q ss_pred             CCCcEEEecCccc-ccCCCccc-ccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCC
Q 039967           55 NQLRILYFDVNQL-HGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGS  132 (445)
Q Consensus        55 ~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  132 (445)
                      .+|++|++++... ....+..+ ..+|+|+.+.+++..+.             ..++..-..++|+|..||+++++++..
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-------------~~dF~~lc~sFpNL~sLDIS~TnI~nl  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-------------NDDFSQLCASFPNLRSLDISGTNISNL  188 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-------------chhHHHHhhccCccceeecCCCCccCc
Confidence            4677777776542 22333333 34666666666554331             112233455667777777777776643


Q ss_pred             CCccccCCCCCceEEeccCcccc-ccCccccCCCCcCEEeCCCcc
Q 039967          133 IPLSLGNLSNLDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLSENQ  176 (445)
Q Consensus       133 ~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~  176 (445)
                        ..+..+++|+.|.+.+-.+.. .....+.++++|+.||++...
T Consensus       189 --~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  189 --SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             --HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence              456666777766666655431 122234456777777776544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=5.1e-06  Score=62.39  Aligned_cols=132  Identities=23%  Similarity=0.301  Sum_probs=83.3

Q ss_pred             CccEEEcCCCcccCCCCc---cccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967          286 GLLLLNMCENHLSGPIPK---SFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN  362 (445)
Q Consensus       286 ~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  362 (445)
                      .+..++++.|++- .++.   .+.....|+.+++++|.+.                   ...+......+..+.+++++|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-------------------~fp~kft~kf~t~t~lNl~~n   87 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-------------------KFPKKFTIKFPTATTLNLANN   87 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-------------------hCCHHHhhccchhhhhhcchh
Confidence            3455666666554 2222   2334456777777777765                   222233344567788888888


Q ss_pred             ccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccc-cCCCCccEEeCCCCcccccCC
Q 039967          363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      .+. ..|..+..+++|+.|+++.|++. ..|..+..+.++-+||.-++.+..+....| ...+.|.  ++.+++|.+.-|
T Consensus        88 eis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~--~lgnepl~~~~~  163 (177)
T KOG4579|consen   88 EIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALI--KLGNEPLGDETK  163 (177)
T ss_pred             hhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHH--HhcCCcccccCc
Confidence            877 66667888888888888888877 666666667788888888887764333333 2233333  557777776655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.58  E-value=3.2e-05  Score=76.77  Aligned_cols=151  Identities=21%  Similarity=0.192  Sum_probs=103.2

Q ss_pred             cCCccEEEcCCCcccCC-CCc-cccccCccceeeccCcccccc------ccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967          284 LTGLLLLNMCENHLSGP-IPK-SFKNLTSVERVLLNQNNLSGK------VNVPKLGTFIISVNNISESIPPEIGDSPKLQ  355 (445)
Q Consensus       284 ~~~L~~L~l~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  355 (445)
                      -.+|++|+++|...... -+. .-.-+|+|+.|.+.+-.+...      ..+|+|..||+++.+++..  ..++++++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            36899999988643211 111 223678999999988765422      3488999999999888744  6677888888


Q ss_pred             EEECCCCcccc-ccchhhccccCCCEEEccCCeeecc------cchhhcCCccCceeecCCCccccccCccc-cCCCCcc
Q 039967          356 VLDLSSNNIVG-EIPVQLGKLFSLNKLILNLNQLSGG------MPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLC  427 (445)
Q Consensus       356 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~  427 (445)
                      +|.+.+-.+.. .....+..+++|+.|+++.......      ..+.-..+|+|+.||.|++.+.....+.+ ...++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            88888777663 2334556788999999987765321      12233457899999999888876655544 4577777


Q ss_pred             EEeCCCCcc
Q 039967          428 YLDLSNNQF  436 (445)
Q Consensus       428 ~l~l~~~~~  436 (445)
                      .+.+-+|..
T Consensus       279 ~i~~~~~~~  287 (699)
T KOG3665|consen  279 QIAALDCLA  287 (699)
T ss_pred             hhhhhhhhc
Confidence            776665433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=7.3e-06  Score=69.19  Aligned_cols=95  Identities=28%  Similarity=0.245  Sum_probs=60.5

Q ss_pred             ccceeeccCccccccc---cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcccccc-chhhccccCCCEEEccC
Q 039967          310 SVERVLLNQNNLSGKV---NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEI-PVQLGKLFSLNKLILNL  385 (445)
Q Consensus       310 ~L~~L~l~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~  385 (445)
                      +.++|+..||.+.++.   .+|.|+.|.++-|+++..  ..+..|+.|++|+|..|.|.+.. ...+.++++|++|.|..
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            3344444444444332   255666666666666533  45678888888988888876432 23456788888999888


Q ss_pred             Ceeecccch-----hhcCCccCceee
Q 039967          386 NQLSGGMPL-----ELGSLIELQYLD  406 (445)
Q Consensus       386 ~~~~~~~~~-----~~~~~~~L~~L~  406 (445)
                      |+..+..+.     .+..+|+|++||
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            887654432     255678888876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.33  E-value=2.4e-05  Score=76.12  Aligned_cols=187  Identities=19%  Similarity=0.081  Sum_probs=91.9

Q ss_pred             CCCCCcEEEccCCccCCC--CCccccCCCCcCEEEccCc-cccCCC----CccccCCCcccEEEeeCcc-ccccChhhhc
Q 039967          187 NLSSLTLMSLFNNSLSGS--LPPILGNLKSLSALGLHIN-QLSGVI----PSSIGNLSSLRALYLYNNG-LYSFVPEEIR  258 (445)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~  258 (445)
                      ..+.|+.+.+.++.....  ........+.|+.++++.+ ......    ......+++|+.++++++. +.......+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            357777777776643322  2234455677888887763 111010    1122345677777777766 4433222332


Q ss_pred             -ccccccEEecccCc-cCCCccc-cccccCCccEEEcCCCcccCC--CCccccccCccceeeccCccccccccCCCcceE
Q 039967          259 -YLTSLSELELCTNH-LSGVIPH-SIGNLTGLLLLNMCENHLSGP--IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF  333 (445)
Q Consensus       259 -~~~~L~~L~l~~~~-~~~~~~~-~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L  333 (445)
                       .+++|+.|.+.+|. ++..... ....++.|+.|++++|.....  .......|+.++.+.+.....     ++.++.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-----c~~l~~~  340 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-----CPSLTDL  340 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----CccHHHH
Confidence             26677777766665 3433222 234566677777777644311  122233455555544333221     3334444


Q ss_pred             EcccCccc---cCCCccccCCCCCcEEECCCCcccccc-chhhccccCC
Q 039967          334 IISVNNIS---ESIPPEIGDSPKLQVLDLSSNNIVGEI-PVQLGKLFSL  378 (445)
Q Consensus       334 ~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L  378 (445)
                      .+.++...   .........|+.++.+.+..+...+.. ...+..|+.|
T Consensus       341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            43332221   111223456677777777666633222 2333444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.00019  Score=60.52  Aligned_cols=83  Identities=31%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             ccCCCCCcEEECCCC--ccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC---cccc
Q 039967          348 IGDSPKLQVLDLSSN--NIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP---KSIG  421 (445)
Q Consensus       348 ~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~  421 (445)
                      +..++.|+.|+++.|  .+...+......+|+|+++++++|++...- ...+..+++|..||+.+|..+....   ..|.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            445566677777766  444444444556677777777777664211 1234455667777777776664221   2344


Q ss_pred             CCCCccEEe
Q 039967          422 NLLRLCYLD  430 (445)
Q Consensus       422 ~~~~L~~l~  430 (445)
                      -+++|+.++
T Consensus       141 ll~~L~~LD  149 (260)
T KOG2739|consen  141 LLPSLKYLD  149 (260)
T ss_pred             Hhhhhcccc
Confidence            566666443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.96  E-value=8e-05  Score=72.41  Aligned_cols=217  Identities=18%  Similarity=0.114  Sum_probs=106.6

Q ss_pred             CCCcCEEEccCccccCC--CCccccCCCcccEEEeeCc-ccccc----ChhhhcccccccEEecccCc-cCCCccccccc
Q 039967          212 LKSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNN-GLYSF----VPEEIRYLTSLSELELCTNH-LSGVIPHSIGN  283 (445)
Q Consensus       212 l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~  283 (445)
                      .+.|+.+.+..+.....  .......++.|+.++++++ .....    .......+++|+.+++..+. +.+.....+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            46666666665532211  1223345666777776652 11110    11223344566666666665 33333333322


Q ss_pred             -cCCccEEEcCCCc-ccCCC-CccccccCccceeeccCccccccc-------cCCCcceEEcccCccccCCCccccCCCC
Q 039967          284 -LTGLLLLNMCENH-LSGPI-PKSFKNLTSVERVLLNQNNLSGKV-------NVPKLGTFIISVNNISESIPPEIGDSPK  353 (445)
Q Consensus       284 -~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~  353 (445)
                       +++|+.|.+.+|. +++.. ......++.|++|++++|......       .+++++.+.+..          ...|+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~----------~~~c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS----------LNGCPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh----------cCCCcc
Confidence             5666666666554 33332 223345666666666665432111       133333322211          111444


Q ss_pred             CcEEECCCCccc---cccchhhccccCCCEEEccCCeeeccc-chhhcCCccC--------------ceeecCCCccccc
Q 039967          354 LQVLDLSSNNIV---GEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIEL--------------QYLDLSTNKLKSS  415 (445)
Q Consensus       354 L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L--------------~~L~l~~~~~~~~  415 (445)
                      ++.+.++++...   ........+++.++.+.+..+...... ...+.+++.|              +.|+++.|.....
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~  416 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD  416 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence            555555544331   122334567888888888887743222 2344455544              7777777764422


Q ss_pred             -cCccccC-CCCccEEeCCCCcccc
Q 039967          416 -IPKSIGN-LLRLCYLDLSNNQFGH  438 (445)
Q Consensus       416 -~~~~~~~-~~~L~~l~l~~~~~~~  438 (445)
                       ....... +..++.+++.+|+..+
T Consensus       417 ~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  417 KGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             cchHHHhhhhhccccCCccCccccc
Confidence             2223333 6677778887776553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.00079  Score=56.84  Aligned_cols=88  Identities=28%  Similarity=0.328  Sum_probs=67.6

Q ss_pred             cCCCCCcEEECCCCccccccchhhccccCCCEEEccCC--eeecccchhhcCCccCceeecCCCccccc-cCccccCCCC
Q 039967          349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN--QLSGGMPLELGSLIELQYLDLSTNKLKSS-IPKSIGNLLR  425 (445)
Q Consensus       349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~  425 (445)
                      .....|+.+.+.++.++..  ..+..+++|++|.++.|  ++.+.++.....+|+|++|++++|++... ....+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3446677778888887622  35678999999999999  66656665566679999999999999742 2345677889


Q ss_pred             ccEEeCCCCcccc
Q 039967          426 LCYLDLSNNQFGH  438 (445)
Q Consensus       426 L~~l~l~~~~~~~  438 (445)
                      |..|++.+|.-++
T Consensus       118 L~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcccCCccc
Confidence            9999999997765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=8.4e-05  Score=63.01  Aligned_cols=100  Identities=23%  Similarity=0.143  Sum_probs=75.9

Q ss_pred             CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc-hhhcCCccCcee
Q 039967          327 VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSLIELQYL  405 (445)
Q Consensus       327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L  405 (445)
                      +.+++.|+.++|.+++..  ....|+.|++|.|+-|+|+..-  .+..|++|++|||..|.+.+... +-+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            556788889999887542  3357899999999999998544  47789999999999999874332 236789999999


Q ss_pred             ecCCCccccccCc-----cccCCCCccEEe
Q 039967          406 DLSTNKLKSSIPK-----SIGNLLRLCYLD  430 (445)
Q Consensus       406 ~l~~~~~~~~~~~-----~~~~~~~L~~l~  430 (445)
                      =|..|.=-+....     .+..+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999986655432     345688888765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.00032  Score=56.72  Aligned_cols=84  Identities=26%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             CCcEEECCCCccccccchhhccccCCCEEEccCCeeeccc-chhh-cCCccCceeecCCCc-cccccCccccCCCCccEE
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLEL-GSLIELQYLDLSTNK-LKSSIPKSIGNLLRLCYL  429 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l  429 (445)
                      -++.+|-+++.+..+..+.+..+++++.|++.+|.-.+-. -+-+ +..++|+.|+|++|. |++.....+..+++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3677888888887777777788888888888888764211 1112 134688888888885 555556667778888877


Q ss_pred             eCCCCcc
Q 039967          430 DLSNNQF  436 (445)
Q Consensus       430 ~l~~~~~  436 (445)
                      .+.+=+.
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            7766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.41  E-value=0.0061  Score=30.37  Aligned_cols=17  Identities=47%  Similarity=0.599  Sum_probs=8.6

Q ss_pred             ccEEeCCCCcccccCCCC
Q 039967          426 LCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       426 L~~l~l~~~~~~~~~~~~  443 (445)
                      |++|++++|+++ ++|.+
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            445555555554 45544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.09  E-value=0.01  Score=29.57  Aligned_cols=21  Identities=62%  Similarity=0.923  Sum_probs=11.3

Q ss_pred             cCceeecCCCccccccCccccC
Q 039967          401 ELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       401 ~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      +|++||+++|+++ ..|..|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 33333443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.0098  Score=48.39  Aligned_cols=83  Identities=20%  Similarity=0.062  Sum_probs=48.9

Q ss_pred             cceEEcccCccccCCCccccCCCCCcEEECCCCcccc-ccchhhc-cccCCCEEEccCCee-ecccchhhcCCccCceee
Q 039967          330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVG-EIPVQLG-KLFSLNKLILNLNQL-SGGMPLELGSLIELQYLD  406 (445)
Q Consensus       330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~  406 (445)
                      ++.++-+++.+...-.+-+..++.++.|.+.+|..-+ .....++ -.++|+.|+|++|.. ++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4445555555544444455566777777777776432 2222222 357788888888764 433445667777888887


Q ss_pred             cCCCcc
Q 039967          407 LSTNKL  412 (445)
Q Consensus       407 l~~~~~  412 (445)
                      |.+=+-
T Consensus       183 l~~l~~  188 (221)
T KOG3864|consen  183 LYDLPY  188 (221)
T ss_pred             hcCchh
Confidence            766543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.74  E-value=0.00067  Score=64.54  Aligned_cols=37  Identities=16%  Similarity=0.182  Sum_probs=18.6

Q ss_pred             CccEEEcCCCcccCC----CCccccccCccceeeccCcccc
Q 039967          286 GLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLS  322 (445)
Q Consensus       286 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  322 (445)
                      .+++|++..|.+...    +...+....+++.++++.|.+.
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence            344455555554433    2233344556666666666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.32  E-value=0.063  Score=24.68  Aligned_cols=13  Identities=54%  Similarity=0.782  Sum_probs=5.9

Q ss_pred             cCceeecCCCccc
Q 039967          401 ELQYLDLSTNKLK  413 (445)
Q Consensus       401 ~L~~L~l~~~~~~  413 (445)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666654

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.20  E-value=0.075  Score=26.99  Aligned_cols=17  Identities=53%  Similarity=0.737  Sum_probs=8.2

Q ss_pred             CCCcEEECCCCcccccc
Q 039967          352 PKLQVLDLSSNNIVGEI  368 (445)
Q Consensus       352 ~~L~~L~l~~~~~~~~~  368 (445)
                      ++|++|++++|.+++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            45566666666655443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.06  E-value=0.56  Score=24.20  Aligned_cols=18  Identities=44%  Similarity=0.589  Sum_probs=8.5

Q ss_pred             CCCcEEeccCCcCCCCCC
Q 039967            7 PHLVHLNLSFNILFGIIP   24 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~   24 (445)
                      ++|++|++++|.+..+++
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555554444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.06  E-value=0.56  Score=24.20  Aligned_cols=18  Identities=44%  Similarity=0.589  Sum_probs=8.5

Q ss_pred             CCCcEEeccCCcCCCCCC
Q 039967            7 PHLVHLNLSFNILFGIIP   24 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~   24 (445)
                      ++|++|++++|.+..+++
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555554444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.88  E-value=0.012  Score=49.06  Aligned_cols=83  Identities=20%  Similarity=0.158  Sum_probs=42.1

Q ss_pred             CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967            5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL   84 (445)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   84 (445)
                      .....++||++.+....+ ..-|..++.+.+|+++.+.+. ..|..+++...++.++...|... ..|.++.+.++++..
T Consensus        40 ~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            334455555555544333 233444555556666655555 55555555555555555544433 345555555555444


Q ss_pred             EecCcc
Q 039967           85 ALCHNY   90 (445)
Q Consensus        85 ~l~~~~   90 (445)
                      +..++.
T Consensus       117 e~k~~~  122 (326)
T KOG0473|consen  117 EQKKTE  122 (326)
T ss_pred             hhccCc
Confidence            444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.14  E-value=0.0063  Score=58.04  Aligned_cols=176  Identities=23%  Similarity=0.222  Sum_probs=116.1

Q ss_pred             ccEEecccCccCCCcc----ccccccCCccEEEcCCCcccCCCCc----ccccc-CccceeeccCcccccccc-------
Q 039967          263 LSELELCTNHLSGVIP----HSIGNLTGLLLLNMCENHLSGPIPK----SFKNL-TSVERVLLNQNNLSGKVN-------  326 (445)
Q Consensus       263 L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~-------  326 (445)
                      +..+.+.+|.+.....    ..+...+.|..+++++|.+.+....    .+... ..++.|.+..|.+.....       
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6777888887764433    3456678899999999988744222    22222 346667777777664332       


Q ss_pred             --CCCcceEEcccCcccc----CCCcccc----CCCCCcEEECCCCccccc----cchhhccccC-CCEEEccCCeeecc
Q 039967          327 --VPKLGTFIISVNNISE----SIPPEIG----DSPKLQVLDLSSNNIVGE----IPVQLGKLFS-LNKLILNLNQLSGG  391 (445)
Q Consensus       327 --~~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~  391 (445)
                        ...++.+++..|.+..    ..+..+.    ...++++|.+.+|.++..    ....+...++ +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence              5567777777777642    1122233    356788899988887732    3334455555 77788888887643


Q ss_pred             c----chhhcCC-ccCceeecCCCccccccCc----cccCCCCccEEeCCCCcccc
Q 039967          392 M----PLELGSL-IELQYLDLSTNKLKSSIPK----SIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       392 ~----~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~  438 (445)
                      .    ...+..+ ..++.+++..|.++.....    .+..+++++++.+.+|++..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2    2234445 5789999999999876653    44678899999999998774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	445
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-41
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-33
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-41
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-32
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-12
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-09
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-12
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		5e-09
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-08
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		8e-12
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-09
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-11
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-11
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		7e-10
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-08
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-11
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-09
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-11
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-11
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-11
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-11
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-11
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-09
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		5e-11
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-11
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-07
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		9e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-06
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-05
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-05
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		5e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		8e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		8e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		8e-05
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		2e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		3e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		4e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		4e-04
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		7e-04
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 163/495 (32%), Positives = 234/495 (47%), Gaps = 72/495 (14%)
Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
           A S+   L  LN+S N   G IPP    L +LQYL L  N+ +G IP  + G  + L  L
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNSL 119
               N  +G++P   G  SL+  LAL  N F                 +P+  L  +  L
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNF--------------SGELPMDTLLKMRGL 342
Query: 120 STMDLSQNQFSGSIPLSLGNLS---------------------------NLDKLYLYSNS 152
             +DLS N+FSG +P SL NLS                            L +LYL +N 
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
           F+G IP  + N   L+ L LS N L G+IP S G+LS L  + L+ N L G +P  L  +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272
           K+L  L L  N L+G IPS + N ++L  + L NN L   +P+ I  L +L+ L+L  N 
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FK-------NLTSVERVLLNQNN---- 320
            SG IP  +G+   L+ L++  N  +G IP + FK       N  + +R +  +N+    
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 321 -LSGKVNVPKL-GTFIISVNNISESIP-------------PEIGDSPKLQVLDLSSNNIV 365
              G  N+ +  G     +N +S   P             P   ++  +  LD+S N + 
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425
           G IP ++G +  L  L L  N +SG +P E+G L  L  LDLS+NKL   IP+++  L  
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 426 LCYLDLSNNQFGHKI 440
           L  +DLSNN     I
Sbjct: 703 LTEIDLSNNNLSGPI 717

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  138 bits (347), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 172/336 (51%), Gaps = 13/336 (3%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L  +D+S N FS  IP  LG+ S L  L +  N  SG     I     L  L++S NQ +
Sbjct: 199 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL-GNLKSLSALGLHINQLSGVIPSSIGNLS 237
           G IP     L SL  +SL  N  +G +P  L G   +L+ L L  N   G +P   G+ S
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 238 SLRALYLYNNGLYSFVP-EEIRYLTSLSELELCTNHLSGVIPHSIGNLTG-LLLLNMCEN 295
            L +L L +N     +P + +  +  L  L+L  N  SG +P S+ NL+  LL L++  N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 296 HLSGPI-PKSFKN-LTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEI 348
           + SGPI P   +N   +++ + L  N  +GK+     N  +L +  +S N +S +IP  +
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
           G   KL+ L L  N + GEIP +L  + +L  LIL+ N L+G +P  L +   L ++ LS
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
            N+L   IPK IG L  L  L LSNN F   I  EL
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 163/495 (32%), Positives = 234/495 (47%), Gaps = 72/495 (14%)
Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
           A S+   L  LN+S N   G IPP    L +LQYL L  N+ +G IP  + G  + L  L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNSL 119
               N  +G++P   G  SL+  LAL  N F                 +P+  L  +  L
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNF--------------SGELPMDTLLKMRGL 345
Query: 120 STMDLSQNQFSGSIPLSLGNLS---------------------------NLDKLYLYSNS 152
             +DLS N+FSG +P SL NLS                            L +LYL +N 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
           F+G IP  + N   L+ L LS N L G+IP S G+LS L  + L+ N L G +P  L  +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272
           K+L  L L  N L+G IPS + N ++L  + L NN L   +P+ I  L +L+ L+L  N 
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FK-------NLTSVERVLLNQNN---- 320
            SG IP  +G+   L+ L++  N  +G IP + FK       N  + +R +  +N+    
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 321 -LSGKVNVPKL-GTFIISVNNISESIP-------------PEIGDSPKLQVLDLSSNNIV 365
              G  N+ +  G     +N +S   P             P   ++  +  LD+S N + 
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425
           G IP ++G +  L  L L  N +SG +P E+G L  L  LDLS+NKL   IP+++  L  
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 426 LCYLDLSNNQFGHKI 440
           L  +DLSNN     I
Sbjct: 706 LTEIDLSNNNLSGPI 720

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 172/336 (51%), Gaps = 13/336 (3%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L  +D+S N FS  IP  LG+ S L  L +  N  SG     I     L  L++S NQ +
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL-GNLKSLSALGLHINQLSGVIPSSIGNLS 237
           G IP     L SL  +SL  N  +G +P  L G   +L+ L L  N   G +P   G+ S
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 238 SLRALYLYNNGLYSFVP-EEIRYLTSLSELELCTNHLSGVIPHSIGNLTG-LLLLNMCEN 295
            L +L L +N     +P + +  +  L  L+L  N  SG +P S+ NL+  LL L++  N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 296 HLSGPI-PKSFKN-LTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEI 348
           + SGPI P   +N   +++ + L  N  +GK+     N  +L +  +S N +S +IP  +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
           G   KL+ L L  N + GEIP +L  + +L  LIL+ N L+G +P  L +   L ++ LS
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
            N+L   IPK IG L  L  L LSNN F   I  EL
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 54/291 (18%)
Query: 109 IPLVLGNLNSLSTMDLSQ-NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
           IP  L NL  L+ + +   N   G IP ++  L+ L  LY+   + SG+IP  +  +K+L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSG 227
           + LD S                         N+LSG+LPP + +L +L  +    N++SG
Sbjct: 128 VTLDFSY------------------------NALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
            IP S G+ S L                        + + +  N L+G IP +  NL  L
Sbjct: 164 AIPDSYGSFSKL-----------------------FTSMTISRNRLTGKIPPTFANLN-L 199
Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS---GKVNVPK-LGTFIISVNNISES 343
             +++  N L G     F +  + +++ L +N+L+   GKV + K L    +  N I  +
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
           +P  +     L  L++S NN+ GEIP Q G L   +      N+   G PL
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 10/238 (4%)
Query: 205 LPPILGNLKSLSALGLH-INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
           +P  L NL  L+ L +  IN L G IP +I  L+ L  LY+ +  +   +P+ +  + +L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV-ERVLLNQNNLS 322
             L+   N LSG +P SI +L  L+ +    N +SG IP S+ + + +   + +++N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 323 GKVNVPKLG----TFI-ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS 377
           GK+  P        F+ +S N +        G     Q + L+ N++  ++  ++G   +
Sbjct: 188 GKI-PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
           LN L L  N++ G +P  L  L  L  L++S N L   IP+  GNL R      +NN+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS-NNIVGE 367
           T  +   +N  +LSG +N+PK              IP  + + P L  L +   NN+VG 
Sbjct: 45  TDTQTYRVNNLDLSG-LNLPK-----------PYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
           IP  + KL  L+ L +    +SG +P  L  +  L  LD S N L  ++P SI +L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 428 YLDLSNNQFGHKI 440
            +    N+    I
Sbjct: 153 GITFDGNRISGAI 165

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
            LV + ++ N +  I P  + NL+NL  L L +NQ++ + PL+ + +LN+L +      D
Sbjct: 90  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 147
Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
           ++ L G   L+  QLS  N +                        I  VL  L +L ++ 
Sbjct: 148 ISALSGLTSLQ--QLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 204
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
            + NQ S   P  LG L+NLD+L L  N     G++ S    L +L  LDL+ NQ+    
Sbjct: 205 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 258
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           PLS   L+ LT + L  N +S   P  L  L +L+ L L+ NQL  + P  I NL +L  
Sbjct: 259 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 312
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L LY N +    P  +  LT L  L    N +S V   S+ NLT +  L+   N +S   
Sbjct: 313 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT 368
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
           P    NLT + ++ LN         N    V++P       +V N++ ++  P  I D  
Sbjct: 369 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 420
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
                D++ N  +   E+      PV +GK
Sbjct: 421 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 450

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 188/405 (46%), Gaps = 75/405 (18%)
Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           L+NL  ++  +NQL+ + PL+  +L +L  +  + NQ+    P                 
Sbjct: 66  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 106
Query: 90  YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                  L NL +L+ + L  NQ +   PL   NL+NL++L L 
Sbjct: 107 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 141
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
           SN+ S  I ++ G L SL QL    NQ+    PL+  NL++L  + + +N +S  S+   
Sbjct: 142 SNTIS-DISALSG-LTSLQQLSFG-NQVTDLKPLA--NLTTLERLDISSNKVSDISVLAK 196
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL+SL A     NQ+S + P  +G L++L  L L  N L       +  LT+L++L+L
Sbjct: 197 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 249
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
             N +S + P  +  LT L  L +  N +S   P     LT++  + LN+N   ++S   
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 305
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           N+  L    +  NNIS+  P  +    KLQ L   +NN V ++   L  L ++N L    
Sbjct: 306 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFANNKVSDVS-SLANLTNINWLSAGH 361
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
           NQ+S   PL  L  + +L   D + TN     K   SIP ++ N+
Sbjct: 362 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 406

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 21/232 (9%)
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L  + +L A  L I  + GV       L++L  +   NN L    P  ++ LT L ++ +
Sbjct: 44  LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 96
Query: 269 CTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNV 327
             N ++ + P  ++ NLTGL L N   N ++   P   KNLT++ R+ L+ N +S    +
Sbjct: 97  NNNQIADITPLANLTNLTGLTLFN---NQITDIDP--LKNLTNLNRLELSSNTISDISAL 151
Query: 328 PKLGTFI-ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN 386
             L +   +S  N    + P + +   L+ LD+SSN  V +I V L KL +L  LI   N
Sbjct: 152 SGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNN 208
Query: 387 QLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
           Q+S   PL  G L  L  L L+ N+LK     ++ +L  L  LDL+NNQ  +
Sbjct: 209 QISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 256

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
            LV + ++ N +  I P  + NL+NL  L L +NQ++ + PL+ + +LN+L +      D
Sbjct: 91  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 148
Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
           ++ L G   L+  QLS  N +                        I  VL  L +L ++ 
Sbjct: 149 ISALSGLTSLQ--QLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 205
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
            + NQ S   P  LG L+NLD+L L  N     G++ S    L +L  LDL+ NQ+    
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 259
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           PLS   L+ LT + L  N +S   P  L  L +L+ L L+ NQL  + P  I NL +L  
Sbjct: 260 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L LY N +    P  +  LT L  L    N +S V   S+ NLT +  L+   N +S   
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
           P    NLT + ++ LN         N    V++P       +V N++ ++  P  I D  
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 421
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
                D++ N  +   E+      PV +GK
Sbjct: 422 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 451

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 187/405 (46%), Gaps = 75/405 (18%)
Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           L+NL  ++  +NQL+ + PL+  +L +L  +  + NQ+    P                 
Sbjct: 67  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 107
Query: 90  YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                  L NL +L+ + L  NQ +   PL   NL+NL++L L 
Sbjct: 108 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 142
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
           SN+ S  I ++ G L SL QL    NQ+    PL+  NL++L  + + +N +S  S+   
Sbjct: 143 SNTIS-DISALSG-LTSLQQLSFG-NQVTDLKPLA--NLTTLERLDISSNKVSDISVLAK 197
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL+SL A     NQ+S + P  +G L++L  L L  N L       +  LT+L++L+L
Sbjct: 198 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
             N +S + P  +  LT L  L +  N +S   P     LT++  + LN+N   ++S   
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 306
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           N+  L    +  NNIS+  P  +    KLQ L    NN V ++   L  L ++N L    
Sbjct: 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 362
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
           NQ+S   PL  L  + +L   D + TN     K   SIP ++ N+
Sbjct: 363 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 21/232 (9%)
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L  + +L A  L I  + GV       L++L  +   NN L    P  ++ LT L ++ +
Sbjct: 45  LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 97
Query: 269 CTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNV 327
             N ++ + P  ++ NLTGL L N   N ++   P   KNLT++ R+ L+ N +S    +
Sbjct: 98  NNNQIADITPLANLTNLTGLTLFN---NQITDIDP--LKNLTNLNRLELSSNTISDISAL 152
Query: 328 PKLGTFI-ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN 386
             L +   +S  N    + P + +   L+ LD+SSN  V +I V L KL +L  LI   N
Sbjct: 153 SGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNN 209
Query: 387 QLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
           Q+S   PL  G L  L  L L+ N+LK     ++ +L  L  LDL+NNQ  +
Sbjct: 210 QISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 188/405 (46%), Gaps = 74/405 (18%)
Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           L+NL  ++  +NQL+ + PL+  +L +L  +  + NQ+    P                 
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90  YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                  L NL +L+ + L  NQ +   PL   NL+NL++L L 
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
           SN+ S  I ++ G L SL QL  S NQ+    PL   NL++L  + + +N +S  S+   
Sbjct: 138 SNTISD-ISALSG-LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 193
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL+SL A     NQ+S + P  +G L++L  L L  N L       +  LT+L++L+L
Sbjct: 194 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
             N +S + P  +  LT L  L +  N +S   P     LT++  + LN+N   ++S   
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           N+  L    +  NNIS+  P  +    KLQ L   SNN V ++   L  L ++N L    
Sbjct: 303 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFSNNKVSDVS-SLANLTNINWLSAGH 358
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
           NQ+S   PL  L  + +L   D + TN     K   SIP ++ N+
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 59/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L++LT ++  NN L+   P  L NL  L  + ++ NQ++ + P  + NL++L  L L+NN
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
            +    P  ++ LT+L+ LEL +N +S +   ++  LT L  L+   N ++   P    N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
           LT++ER                                           LD+SSN  V +
Sbjct: 172 LTTLER-------------------------------------------LDISSNK-VSD 187
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
           I V L KL +L  LI   NQ+S   PL  G L  L  L L+ N+LK     ++ +L  L 
Sbjct: 188 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 428 YLDLSNNQFGH 438
            LDL+NNQ  +
Sbjct: 243 DLDLANNQISN 253

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 1/223 (0%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN-QLIGSIP 182
           L  N+ S     S  +  NL  L+L+SN+ +G   +    L  L QLDLS+N QL    P
Sbjct: 38  LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
            +F  L  L  + L    L    P +   L +L  L L  N L  +  ++  +L +L  L
Sbjct: 98  TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
           +L+ N + S      R L SL  L L  NH++ V PH+  +L  L+ L +  N+LS    
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPA 217
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
           +    L S++ + LN N          L  ++      S  +P
Sbjct: 218 EVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 260

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
            LV + ++ N +  I P  + NL+NL  L L +NQ++ + PL+ + +LN+L +      D
Sbjct: 86  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
           ++ L G   L+  QL+  N +                        I  VL  L +L ++ 
Sbjct: 144 ISALSGLTSLQ--QLNFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 200
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
            + NQ S   P  LG L+NLD+L L  N     G++ S    L +L  LDL+ NQ+    
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 254
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           PLS   L+ LT + L  N +S   P  L  L +L+ L L+ NQL  + P  I NL +L  
Sbjct: 255 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 308
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L LY N +    P  +  LT L  L    N +S V   S+ NLT +  L+   N +S   
Sbjct: 309 LTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLT 364
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
           P    NLT + ++ LN         N    V++P       +V N++ ++  P  I D  
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 416
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
                D++ N  +   E+      PV +GK
Sbjct: 417 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 446

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 188/405 (46%), Gaps = 75/405 (18%)
Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           L+NL  ++  +NQL+ + PL+  +L +L  +  + NQ+    P                 
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90  YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                  L NL +L+ + L  NQ +   PL   NL+NL++L L 
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
           SN+ S  I ++ G L SL QL+   NQ+    PL   NL++L  + + +N +S  S+   
Sbjct: 138 SNTIS-DISALSG-LTSLQQLNFG-NQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 192
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL+SL A     NQ+S + P  +G L++L  L L  N L       +  LT+L++L+L
Sbjct: 193 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
             N +S + P  +  LT L  L +  N +S   P     LT++  + LN+N   ++S   
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           N+  L    +  NNIS+  P  +    KLQ L   SNN V ++   L  L ++N L    
Sbjct: 302 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFSNNKVSDVS-SLANLTNINWLSAGH 357
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
           NQ+S   PL  L  + +L   D + TN     K   SIP ++ N+
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 60/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L++LT ++  NN L+   P  L NL  L  + ++ NQ++ + P  + NL++L  L L+NN
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
            +    P  ++ LT+L+ LEL +N +S +   ++  LT L  LN   N ++   P    N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LAN 170
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
           LT++ER                                           LD+SSN  V +
Sbjct: 171 LTTLER-------------------------------------------LDISSNK-VSD 186
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
           I V L KL +L  LI   NQ+S   PL  G L  L  L L+ N+LK     ++ +L  L 
Sbjct: 187 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 241
Query: 428 YLDLSNNQFGH 438
            LDL+NNQ  +
Sbjct: 242 DLDLANNQISN 252

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
            LV + ++ N +  I P  + NL+NL  L L +NQ++ + PL+ + +LN+L +      D
Sbjct: 86  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
           ++ L G   L+  QL+  N +                        I  VL  L +L ++ 
Sbjct: 144 ISALSGLTSLQ--QLNFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 200
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
            + NQ S   P  LG L+NLD+L L  N     G++ S    L +L  LDL+ NQ+    
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 254
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           PLS   L+ LT + L  N +S   P  L  L +L+ L L+ NQL  + P  I NL +L  
Sbjct: 255 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 308
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L LY N +    P  +  LT L  L    N +S V   S+ NLT +  L+   N +S   
Sbjct: 309 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 364
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
           P    NLT + ++ LN         N    V++P       +V N++ ++  P  I D  
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 416
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
                D++ N  +   E+      PV +GK
Sbjct: 417 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 446

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 187/405 (46%), Gaps = 75/405 (18%)
Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           L+NL  ++  +NQL+ + PL+  +L +L  +  + NQ+    P                 
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90  YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                  L NL +L+ + L  NQ +   PL   NL+NL++L L 
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
           SN+ S  I ++ G L SL QL+   NQ+    PL   NL++L  + + +N +S  S+   
Sbjct: 138 SNTIS-DISALSG-LTSLQQLNFG-NQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 192
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL+SL A     NQ+S + P  +G L++L  L L  N L       +  LT+L++L+L
Sbjct: 193 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
             N +S + P  +  LT L  L +  N +S   P     LT++  + LN+N   ++S   
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           N+  L    +  NNIS+  P  +    KLQ L    NN V ++   L  L ++N L    
Sbjct: 302 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 357
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
           NQ+S   PL  L  + +L   D + TN     K   SIP ++ N+
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 60/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L++LT ++  NN L+   P  L NL  L  + ++ NQ++ + P  + NL++L  L L+NN
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
            +    P  ++ LT+L+ LEL +N +S +   ++  LT L  LN   N ++   P    N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LAN 170
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
           LT++ER                                           LD+SSN  V +
Sbjct: 171 LTTLER-------------------------------------------LDISSNK-VSD 186
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
           I V L KL +L  LI   NQ+S   PL  G L  L  L L+ N+LK     ++ +L  L 
Sbjct: 187 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 241
Query: 428 YLDLSNNQFGH 438
            LDL+NNQ  +
Sbjct: 242 DLDLANNQISN 252

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 142/297 (47%), Gaps = 43/297 (14%)
Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           A S    L  LN S N +  + P  + NL+ L+ LD+ SN++S +  L    L  L  L 
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLI 201
Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLST 121
              NQ+    PL  G L+ ++ L+L  N                       L +L +L+ 
Sbjct: 202 ATNNQISDITPL--GILTNLDELSLNGNQLKDIG----------------TLASLTNLTD 243
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           +DL+ NQ S   PLS   L+ L +L L +N  S   P  +  L +L  L+L+ENQL    
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 299
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           P+S  NL +LT ++L+ N++S   P  + +L  L  L  + N++S V  SS+ NL+++  
Sbjct: 300 PIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 353
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV---------IPHSIGNLTGLLL 289
           L   +N +    P  +  LT +++L L     +           IP+++ N+TG L+
Sbjct: 354 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 408

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 176/406 (43%), Gaps = 83/406 (20%)
Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI------- 59
            LV + ++ N +  I P  + NL+NL  L L +NQ++ + PL+ + +LN+L +       
Sbjct: 86  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 60  ------------LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXX 107
                       L F  NQ+    PL    L+ +  L +  N                  
Sbjct: 144 ISALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSDIS------------ 189
Query: 108 XIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLK 165
               VL  L +L ++  + NQ S   P  LG L+NLD+L L  N     G++ S    L 
Sbjct: 190 ----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
           +L  LDL+ NQ+    PLS   L+ LT + L  N +S   P  L  L +L+ L L+ NQL
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
             + P  I NL +L  L LY N +    P  +  LT L  L    N +S V   S+ NLT
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 349
Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVN 338
            +  L+   N +S   P    NLT + ++ LN         N    V++P       +V 
Sbjct: 350 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVK 401
Query: 339 NISESI--PPEIGDSPKLQVLDLSSN--NIVGEI------PVQLGK 374
           N++ ++  P  I D       D++ N  +   E+      PV +GK
Sbjct: 402 NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 447

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 188/405 (46%), Gaps = 74/405 (18%)
Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           L+NL  ++  +NQL+ + PL+  +L +L  +  + NQ+    P                 
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90  YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                  L NL +L+ + L  NQ +   PL   NL+NL++L L 
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
           SN+ S  I ++ G L SL QL+ S NQ+    PL   NL++L  + + +N +S  S+   
Sbjct: 138 SNTIS-DISALSG-LTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 193
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL+SL A     NQ+S + P  +G L++L  L L  N L       +  LT+L++L+L
Sbjct: 194 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
             N +S + P  +  LT L  L +  N +S   P     LT++  + LN+N   ++S   
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           N+  L    +  NNIS+  P  +    KLQ L    NN V ++   L  L ++N L    
Sbjct: 303 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 358
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
           NQ+S   PL  L  + +L   D + TN     K   SIP ++ N+
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 59/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L++LT ++  NN L+   P  L NL  L  + ++ NQ++ + P  + NL++L  L L+NN
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
            +    P  ++ LT+L+ LEL +N +S +   ++  LT L  LN   N ++   P    N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LAN 171
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
           LT++ER                                           LD+SSN  V +
Sbjct: 172 LTTLER-------------------------------------------LDISSNK-VSD 187
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
           I V L KL +L  LI   NQ+S   PL  G L  L  L L+ N+LK     ++ +L  L 
Sbjct: 188 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 428 YLDLSNNQFGH 438
            LDL+NNQ  +
Sbjct: 243 DLDLANNQISN 253

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 176/406 (43%), Gaps = 83/406 (20%)
Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI------- 59
            LV + ++ N +  I P  + NL+NL  L L +NQ++ + PL+ + +LN+L +       
Sbjct: 86  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 60  ------------LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXX 107
                       L F  NQ+    PL    L+ +  L +  N                  
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDIS------------ 189
Query: 108 XIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLK 165
               VL  L +L ++  + NQ S   P  LG L+NLD+L L  N     G++ S    L 
Sbjct: 190 ----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
           +L  LDL+ NQ+    PLS   L+ LT + L  N +S   P  L  L +L+ L L+ NQL
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
             + P  I NL +L  L LY N +    P  +  LT L  L    N +S V   S+ NLT
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 349
Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVN 338
            +  L+   N +S   P    NLT + ++ LN         N    V++P       +V 
Sbjct: 350 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVK 401
Query: 339 NISESI--PPEIGDSPKLQVLDLSSN--NIVGEI------PVQLGK 374
           N++ ++  P  I D       D++ N  +   E+      PV +GK
Sbjct: 402 NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 447

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 187/405 (46%), Gaps = 74/405 (18%)
Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           L+NL  ++  +NQL+ + PL+  +L +L  +  + NQ+    P                 
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90  YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                  L NL +L+ + L  NQ +   PL   NL+NL++L L 
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
           SN+ S  I ++ G L SL QL  S NQ+    PL   NL++L  + + +N +S  S+   
Sbjct: 138 SNTIS-DISALSG-LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 193
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL+SL A     NQ+S + P  +G L++L  L L  N L       +  LT+L++L+L
Sbjct: 194 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
             N +S + P  +  LT L  L +  N +S   P     LT++  + LN+N   ++S   
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           N+  L    +  NNIS+  P  +    KLQ L    NN V ++   L  L ++N L    
Sbjct: 303 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 358
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
           NQ+S   PL  L  + +L   D + TN     K   SIP ++ N+
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 59/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L++LT ++  NN L+   P  L NL  L  + ++ NQ++ + P  + NL++L  L L+NN
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
            +    P  ++ LT+L+ LEL +N +S +   ++  LT L  L+   N ++   P    N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
           LT++ER                                           LD+SSN  V +
Sbjct: 172 LTTLER-------------------------------------------LDISSNK-VSD 187
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
           I V L KL +L  LI   NQ+S   PL  G L  L  L L+ N+LK     ++ +L  L 
Sbjct: 188 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 428 YLDLSNNQFGH 438
            LDL+NNQ  +
Sbjct: 243 DLDLANNQISN 253

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 1/223 (0%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI-P 182
           L  N+ S     S     NL  L+L+SN  +    +    L  L QLDLS+N  + S+ P
Sbjct: 38  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
            +F  L  L  + L    L    P +   L +L  L L  N L  +   +  +L +L  L
Sbjct: 98  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
           +L+ N + S      R L SL  L L  N ++ V PH+  +L  L+ L +  N+LS    
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 217
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
           ++   L +++ + LN N          L  ++      S  +P
Sbjct: 218 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 260

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 1/223 (0%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI-P 182
           L  N+ S     S     NL  L+L+SN  +    +    L  L QLDLS+N  + S+ P
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
            +F  L  L  + L    L    P +   L +L  L L  N L  +   +  +L +L  L
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
           +L+ N + S      R L SL  L L  N ++ V PH+  +L  L+ L +  N+LS    
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
           ++   L +++ + LN N          L  ++      S  +P
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 118 SLSTMDLSQNQFSGSIPLS-----LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           SL  +DLS   F+G I +S     L  L +LD  + +SN    S  S+  +L++L+ LD+
Sbjct: 374 SLKYLDLS---FNGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-LPPILGNLKSLSALGLHINQLSGVIPS 231
           S      +    F  LSSL ++ +  NS   + LP I   L++L+ L L   QL  + P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-TGLLLL 290
           +  +LSSL+ L + +N  +S      + L SL  L+   NH+       + +  + L  L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
Query: 291 NMCENHLSGPIP-KSFKNLTSVERVLL 316
           N+ +N  +     +SF      +R LL
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLL 575

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 118 SLSTMDLSQNQFSGSIPLS-----LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           SL  +DLS   F+G I +S     L  L +LD  + +SN    S  S+  +L++L+ LD+
Sbjct: 398 SLKYLDLS---FNGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-LPPILGNLKSLSALGLHINQLSGVIPS 231
           S      +    F  LSSL ++ +  NS   + LP I   L++L+ L L   QL  + P+
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-TGLLLL 290
           +  +LSSL+ L + +N  +S      + L SL  L+   NH+       + +  + L  L
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572
Query: 291 NMCENHLSGPIP-KSFKNLTSVERVLL 316
           N+ +N  +     +SF      +R LL
Sbjct: 573 NLTQNDFACTCEHQSFLQWIKDQRQLL 599

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 118 SLSTMDLSQNQFSGSIPLS-----LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           SL  +DLS   F+G I +S     L  L +LD  + +SN    S  S+  +L++L+ LD+
Sbjct: 79  SLKYLDLS---FNGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-LPPILGNLKSLSALGLHINQLSGVIPS 231
           S      +    F  LSSL ++ +  NS   + LP I   L++L+ L L   QL  + P+
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-TGLLLL 290
           +  +LSSL+ L + +N  +S      + L SL  L+   NH+       + +  + L  L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
Query: 291 NMCENHLSGPIP-KSFKNLTSVERVLL 316
           N+ +N  +     +SF      +R LL
Sbjct: 254 NLTQNDFACTCEHQSFLQWIKDQRQLL 280

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L++L  ++L  N ++   P  L NL  L+ L +  N+++ +  S++ NL++LR LYL  +
Sbjct: 65  LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 248 GLYSFVPEEIRYLTSLSELELCTNH-LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
            +    P  +  LT    L L  NH LS + P  + N TGL  L + E+ +    P    
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IA 174
Query: 307 NLTSVERVLLNQN---NLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
           NLT +  + LN N   ++S   ++  L  F   VN I++  P  + +  +L  L + +N 
Sbjct: 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNK 232
Query: 364 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL 423
           I    P  L  L  L  L +  NQ+S    ++   L +L+ L++ +N++  S    + NL
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSNQI--SDISVLNNL 286
Query: 424 LRLCYLDLSNNQFGHK 439
            +L  L L+NNQ G++
Sbjct: 287 SQLNSLFLNNNQLGNE 302

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 7/205 (3%)
Query: 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSEN 175
           N+ +++D S  + + +IP ++   ++  KL L SN  S S+PS     L  L  L L++N
Sbjct: 16  NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN 71
Query: 176 QLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 234
           +L  ++P   F  L +L  + + +N L      +   L +L+ L L  NQL  + P    
Sbjct: 72  KL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
           +L+ L  L L  N L S        LTSL EL L  N L  V   +   LT L  L +  
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 295 NHLSGPIPKSFKNLTSVERVLLNQN 319
           N L      +F +L  ++ + L +N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 6/166 (3%)
Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSG 227
           +LDL  N+L      +F  L+ L L+ L +N L  +LP  I   LK+L  L +  N+L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
           +       L +L  L L  N L S  P     LT L+ L L  N L  +       LT L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333
             L +  N L      +F  LT ++ + L+ N L     VP+ G F
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK---RVPE-GAF 201

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 323
            +L+L +N LS +   +   LT L LL + +N L       FK L ++E + +  N L  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 324 KVNVPKLGTFIISVN--------NISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQLGK 374
              +P +G F   VN        N  +S+PP + DS  KL  L L  N +         K
Sbjct: 100 ---LP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 375 LFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
           L SL +L L  NQL          L EL+ L L  N+LK     +  +L +L  L L  N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 435 QF 436
            +
Sbjct: 216 PW 217

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
            L  L +L+ + L+ NQ   S+P  +   L+NL +L L  N        +   L +L  L
Sbjct: 80  ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 171 DLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGV 228
           +L+ NQL  S+P   F  L++LT + L  N L  SLP  +   L  L  L L+ NQL  V
Sbjct: 139 NLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
                  L+SL+ ++L++N      P  IRYL+         N  SGV+ +S G++ 
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEW------INKHSGVVRNSAGSVA 246

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 64/148 (43%)
Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV 228
           +LDL    L      +F  L+ LT ++L  N L      +  +L  L  LGL  NQL+ +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
                 +L+ L  LYL  N L S        LT L EL L TN L  +   +   LT L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLL 316
            L++  N L      +F  L  ++ + L
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 64/148 (43%)
Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV 228
           +LDL    L      +F  L+ LT ++L  N L      +  +L  L  LGL  NQL+ +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
                 +L+ L  LYL  N L S        LT L EL L TN L  +   +   LT L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLL 316
            L++  N L      +F  L  ++ + L
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 114 GNLNSLSTMDLSQNQFSG--SIPLSLGNLSNLDKLYLYSNSF-SGSIPSIIGNLKSLLQL 170
             L  L T+ L +N       + L   N+S+L+ L +  NS  S +        +S+L L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 171 DLSENQLIGSIPLSFGNLS-SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229
           +LS N L GS+   F  L   + ++ L NN +  S+P  + +L++L  L +  NQL  V 
Sbjct: 434 NLSSNMLTGSV---FRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
                 L+SL+ ++L++N      P  IRYL+         N  SGV+ +S G++ 
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEW------INKHSGVVRNSAGSVA 538

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFN 198
           L++L +LYL  N        +   L SL  L+LS NQL  S+P   F  L+ L  ++L  
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNT 109
Query: 199 NSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI 257
           N L  SLP  +   L  L  L L+ NQL  V       L+SL+ ++L++N      P  I
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-GI 167
Query: 258 RYLTSLSELELCTNHLSGVIPHSIGNL 284
           RYL+         N  SGV+ +S G++
Sbjct: 168 RYLSEW------INKHSGVVRNSAGSV 188

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS-IPSIIGNLKSLLQL 170
           V  +L +L  +D+S      +       LS+L+ L +  NSF  + +P I   L++L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
           DLS+ QL    P +F +LSSL ++++ +N L      I   L SL  + LH N      P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL 201
           ++ +LYL  N F+  +P  + N K L  +DLS N++      SF N++ L  + L  N L
Sbjct: 32  DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 202 SGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLY 250
               P     LKSL  L LH N +S V   +  +LS+L  L +  N LY
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN-LKSLLQLDLSE 174
           L SL+T++L  N+ +     +   LS L +L+L +N    SIPS   N + SL +LDL E
Sbjct: 82  LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE 140
Query: 175 NQLIGSI-PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
            + +  I   +F  L +L  ++L   +L     P L  L  L  L L  N+L  + P S 
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
             L+SLR L+L +  + +        L SL EL L  N+L   +PH +            
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL------------ 245
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
                      F  L  +ERV LN N      +V  L  +      + E++P
Sbjct: 246 -----------FTPLHRLERVHLNHNPWHCNCDVLWLSWW------LKETVP 280

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
           LN+L  ++L  NQ +   PL   NL+ + +L L  N       S I  L+S+  LDL+  
Sbjct: 68  LNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
           Q+    PL+   LS+L ++ L  N ++   P  L  L +L  L +  NQ++ + P  + N
Sbjct: 124 QITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LAN 177
Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
           LS L  L   +N +    P  +  L +L E+ L  N +S V P  + NL+ L ++ + 
Sbjct: 178 LSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIVTLT 231

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP-SIIGNLKSLLQLDLSENQLIGSIP 182
           L  NQ +   P    +L NL +LYL SN   G++P  +  +L  L  LDL  NQL     
Sbjct: 47  LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
             F  L  L  + +  N L+  LP  +  L  L+ L L  NQL  +   +   LSSL   
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
Query: 243 YLYNNGLYSFVPEEIRYL 260
           YL+ N  +     +I YL
Sbjct: 165 YLFGNP-WDCECRDIMYL 181

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
           L LH NQ++ + P    +L +L+ LYL +N L +        LT L+ L+L TN L+ V+
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103
Query: 278 PHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321
           P ++   L  L  L MC N L+  +P+  + LT +  + L+QN L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNN 199
           S+  +L L SN        +   L  L +L LS+NQ I S+P   F  L+ LT++ L  N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN 86
Query: 200 SLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIR 258
            L  SLP  +   L  L  L L  NQL  V       L+SL+ ++L+ N      P  I 
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RID 144
Query: 259 YLTSL 263
           YL+  
Sbjct: 145 YLSRW 149

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
           L+ NQ +   P    +L NL +LY  SN  +     +   L  L QLDL++N L  SIP 
Sbjct: 40  LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPR 98
Query: 184 -SFGNLSSLTLMSLFNNSLSGSLPPIL 209
            +F NL SLT + L+NN        I+
Sbjct: 99  GAFDNLKSLTHIYLYNNPWDCECRDIM 125

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN-LKSLLQLDLSE 174
           L SL+T++L  N+ +     +   LS L +L+L +N    SIPS   N + SL +LDL E
Sbjct: 82  LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE 140
Query: 175 NQLIGSI-PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
            + +  I   +F  L +L  ++L   +L     P L  L  L  L L  N+L  + P S 
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
             L+SLR L+L +  + +        L SL EL L  N+L   +PH +            
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL------------ 245
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
                      F  L  +ERV LN N      +V  L  +      + E++P
Sbjct: 246 -----------FTPLHRLERVHLNHNPWHCNCDVLWLSWW------LKETVP 280

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
            S+P+ I     +L L +  NQ+    P  F +L+ LT ++L  N L+     +   L  
Sbjct: 32  ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L+ L LHINQL  +      NL SL  +YL+NN
Sbjct: 90  LTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 136 SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMS 195
           +L  L+NL  L L  N        +   L +L +L L ENQL       F  L++LT + 
Sbjct: 80  ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 196 LFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVP 254
           L++N L  SLP  +   L +L+ L L  NQL  +       L+ L+ L L +N L S VP
Sbjct: 140 LYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VP 197
Query: 255 EEI-RYLTSLSELELCTN 271
           + +   LTSL+ + L  N
Sbjct: 198 DGVFDRLTSLTHIWLLNN 215

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 184 SFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
           +   L++LT + L  N L  SLP  +   L +L  L L  NQL  +       L++L  L
Sbjct: 80  ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
           YLY+N L S        LT+L+ L+L  N L  +       LT L  L++ +N L     
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 303 KSFKNLTSVERVLL 316
             F  LTS+  + L
Sbjct: 199 GVFDRLTSLTHIWL 212

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 144/329 (43%), Gaps = 56/329 (17%)
Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
           F+SFPHL  L L+ NI+  + P    NL NL+ L L SN+L  +IPL +           
Sbjct: 52  FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGV----------- 99
Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTM 122
               L     L+I +  ++ +L    +Y                      L NL SL   
Sbjct: 100 -FTGLSNLTKLDISENKIVILL----DYMFQD------------------LYNLKSLEVG 136
Query: 123 D-----LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQ 176
           D     +S   FSG        L++L++L L   + + SIP+  + +L  L+ L L    
Sbjct: 137 DNDLVYISHRAFSG--------LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187
Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP--ILG-NLKSLSALGLHINQLSGVIPSSI 233
           +      SF  L  L ++ + +     ++ P  + G NL SLS    H N L+ V   ++
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI--THCN-LTAVPYLAV 244
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
            +L  LR L L  N + +     +  L  L E++L    L+ V P++   L  L +LN+ 
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
            N L+      F ++ ++E ++L+ N L+
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 160 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALG 219
           + G L  L++L+L  NQL G  P +F   S +  + L  N +      +   L  L  L 
Sbjct: 49  LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 220 LHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L+ NQ+S V+P S  +L+SL +L L +N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
           L +LYL  NS +  +P+ I NL +L  LDLS N+L  S+P   G+   L     F+N ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 203 GSLPPILGNLKSLSALGLHINQLSG-----VIPSSIGNLSSLRALYLYNNGLYSFVPEEI 257
            +LP   GNL +L  LG+  N L       +   S+  L      YL +N     +P E 
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL----IFYLRDNRPEIPLPHER 361
Query: 258 RYL---------TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
           R++              L+  T HL+  +  +    T L    +C+++ +   PK ++
Sbjct: 362 RFIEINTDGEPQREYDSLQQSTEHLATDL--AKRTFTVLSYNTLCQHYAT---PKMYR 414

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 27/252 (10%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN-LKSLLQLDL-- 172
           L SL+T++L  N  +     +   LS L +L+L +N    SIPS   N + SL++LDL  
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180
Query: 173 -------SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
                  SE    G   L + NL    +  + N      L P++G    L  L +  N  
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN------LTPLVG----LEELEMSGNHF 230
Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGN-L 284
             + P S   LSSL+ L++ N+ +          L SL EL L  N+LS  +PH +   L
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPL 289
Query: 285 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVP--KLGTFIISVNNIS- 341
             L+ L++  N  +      +      E +  N +   G+ + P    G +++ V+  S 
Sbjct: 290 RYLVELHLHHNPWNCDCDILWLAWWLREYIPTN-STCCGRCHAPMHMRGRYLVEVDQASF 348
Query: 342 ESIPPEIGDSPK 353
           +   P I D+P+
Sbjct: 349 QCSAPFIMDAPR 360

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 192/454 (42%), Gaps = 68/454 (14%)
Query: 1   FAFSSFPHLVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGV-IPLEIGHLNQLR 58
           F F+    L +L+LS N L  I   P +    NL++LDL  N    + I  E G+++QL+
Sbjct: 65  FKFNQ--ELEYLDLSHNKLVKISCHPTV----NLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLN- 117
            L      L  S  L I  L++  VL +    +                  P  L + N 
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY-------------GEKEDPEGLQDFNT 165
Query: 118 -SLSTMDLSQNQFSGSIPLSLGNLSNLD----KLYLYSNSFSGSIPSIIGNLKS------ 166
            SL  +  +  +F   + +S+  ++NL+    K  L  N  S  + SI+  L++      
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL-SILAKLQTNPKLSN 224
Query: 167 --LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQ 224
             L  ++ + N  I  + L +   +++   S+ N  L G L     + +     G  +  
Sbjct: 225 LTLNNIETTWNSFIRILQLVWH--TTVWYFSISNVKLQGQL-----DFRDFDYSGTSLKA 277
Query: 225 LSGVIPSSIGNLSSLRALYLY----NNGLYSFVPEEIRYLTSLS--------ELELCTNH 272
           LS  I   + ++      Y+Y    N  + +F     R +  L          L+   N 
Sbjct: 278 LS--IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335
Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLS--GPIPKSFKNLTSVERVLLNQNNLS-----GKV 325
           L+  +  + G+LT L  L +  N L     I +    + S++++ ++QN++S     G  
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 326 NVPK-LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN 384
           +  K L +  +S N ++++I   +   P+++VLDL SN I   IP Q+ KL +L +L + 
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVA 452
Query: 385 LNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK 418
            NQL          L  LQ + L TN    S P+
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
           LN+L  ++L  NQ +   PL   NL+ + +L L  N       S I  L+S+  LDL+  
Sbjct: 62  LNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
           Q+    PL+   LS+L ++ L  N ++   P  L  L +L  L +   Q+S + P  + N
Sbjct: 118 QITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN 171
Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
           LS L  L   +N +    P  +  L +L E+ L  N +S V P  + N + L ++ +   
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227
Query: 296 HLS 298
            ++
Sbjct: 228 TIT 230

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-105
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-105
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-104
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  328 bits (844), Expect = e-105
 Identities = 138/444 (31%), Positives = 207/444 (46%), Gaps = 27/444 (6%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRILY 61
             +   L  L+LS N  +G +PP  G+ S L+ L L SN  SG +P++ +  +  L++L 
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGN--LNSL 119
              N+  G +P  +  LS              +L    L++N+    I   L     N+L
Sbjct: 350 LSFNEFSGELPESLTNLSA-------------SLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
             + L  N F+G IP +L N S L  L+L  N  SG+IPS +G+L  L  L L  N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
            IP     + +L  + L  N L+G +P  L N  +L+ + L  N+L+G IP  IG L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG 299
             L L NN     +P E+    SL  L+L TN  +G IP ++   +G +      N ++G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA----NFIAG 572

Query: 300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPK-------LGTFIISVNNISESIPPEIGDSP 352
                 KN    +      N L  +    +            I+         P   ++ 
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
            +  LD+S N + G IP ++G +  L  L L  N +SG +P E+G L  L  LDLS+NKL
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 413 KSSIPKSIGNLLRLCYLDLSNNQF 436
              IP+++  L  L  +DLSNN  
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  327 bits (841), Expect = e-105
 Identities = 132/464 (28%), Positives = 214/464 (46%), Gaps = 27/464 (5%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
                   L HL +S N + G +   +    NL++LD+ SN  S  IP  +G  + L+ L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 228

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFV--------CNLANFYLNNNSLFNSIPLV 112
               N+L G     I   + + +L +  N FV         +L    L  N     IP  
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF 288

Query: 113 L-GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP-SIIGNLKSLLQL 170
           L G  ++L+ +DLS N F G++P   G+ S L+ L L SN+FSG +P   +  ++ L  L
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 171 DLSENQLIGSIPLSFGNLS-SLTLMSLFNNSLSGSLPPILGN--LKSLSALGLHINQLSG 227
           DLS N+  G +P S  NLS SL  + L +N+ SG + P L      +L  L L  N  +G
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
            IP ++ N S L +L+L  N L   +P  +  L+ L +L+L  N L G IP  +  +  L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISE 342
             L +  N L+G IP    N T++  + L+ N L+G++      +  L    +S N+ S 
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
           +IP E+GD   L  LDL++N   G IP  + K        +  N ++G   + + +    
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMK 584

Query: 403 QYLDLSTN--KLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           +    + N  + +    + +  L      ++++  +G       
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  325 bits (836), Expect = e-104
 Identities = 138/448 (30%), Positives = 211/448 (47%), Gaps = 29/448 (6%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPP--QIGNLSNLQYLDLGSNQLSGVIPLEIG-HLNQLR 58
            F     L  L+LS N L G +     +G+ S L++L++ SN L     +  G  LN L 
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNS 118
           +L    N + G+  +                     L +  ++ N +   +   +    +
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCG-----------ELKHLAISGNKISGDVD--VSRCVN 201

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L  +D+S N FS  IP  LG+ S L  L +  N  SG     I     L  L++S NQ +
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
           G IP     L SL  +SL  N  +G +P  + G   +L+ L L  N   G +P   G+ S
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 238 SLRALYLYNNGLYSFVPEE-IRYLTSLSELELCTNHLSGVIPHSIGNLTG-LLLLNMCEN 295
            L +L L +N     +P + +  +  L  L+L  N  SG +P S+ NL+  LL L++  N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 296 HLSGPIPKSFKN--LTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEI 348
           + SGPI  +       +++ + L  N  +GK+     N  +L +  +S N +S +IP  +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
           G   KL+ L L  N + GEIP +L  + +L  LIL+ N L+G +P  L +   L ++ LS
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            N+L   IPK IG L  L  L LSNN F
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  318 bits (817), Expect = e-101
 Identities = 135/455 (29%), Positives = 208/455 (45%), Gaps = 36/455 (7%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQI---GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI 59
                 L  L+LS N + G              L++L +  N++SG +   +     L  
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEF 204

Query: 60  LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSL 119
           L    N     IP  +G  S               L +  ++ N L       +     L
Sbjct: 205 LDVSSNNFSTGIP-FLGDCS--------------ALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP-SIIGNLKSLLQLDLSENQLI 178
             +++S NQF G IP     L +L  L L  N F+G IP  + G   +L  LDLS N   
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
           G++P  FG+ S L  ++L +N+ SG LP   L  ++ L  L L  N+ SG +P S+ NLS
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 238 -SLRALYLYNNGLYSFVPEEI--RYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
            SL  L L +N     +   +      +L EL L  N  +G IP ++ N + L+ L++  
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIG 349
           N+LSG IP S  +L+ +  + L  N L G++      V  L T I+  N+++  IP  + 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409
           +   L  + LS+N + GEIP  +G+L +L  L L+ N  SG +P ELG    L +LDL+T
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 410 NKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           N    +IP ++          ++ N    K  V +
Sbjct: 548 NLFNGTIPAAMFKQS----GKIAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  314 bits (806), Expect = e-100
 Identities = 130/458 (28%), Positives = 208/458 (45%), Gaps = 35/458 (7%)

Query: 8   HLVHLNLS---FNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV 64
            +  ++LS    N+ F  +   + +L+ L+ L L ++ ++G +         L  L    
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 65  NQLHGSIP--LEIGQLSLINVLALCHNYFV-----------CNLANFYLNNNSLFNSIP- 110
           N L G +     +G  S +  L +  N               +L    L+ NS+  +   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 111 --LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL 168
             ++      L  + +S N+ SG +   +    NL+ L + SN+FS  IP  +G+  +L 
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226

Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV 228
            LD+S N+L G    +    + L L+++ +N   G +PP    LKSL  L L  N+ +G 
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE 284

Query: 229 IPSSI-GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTG 286
           IP  + G   +L  L L  N  Y  VP      + L  L L +N+ SG +P  ++  + G
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 287 LLLLNMCENHLSGPIPKSFKNLT-SVERVLLNQNNLSGKV-------NVPKLGTFIISVN 338
           L +L++  N  SG +P+S  NL+ S+  + L+ NN SG +           L    +  N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 339 NISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS 398
             +  IPP + +  +L  L LS N + G IP  LG L  L  L L LN L G +P EL  
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 399 LIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           +  L+ L L  N L   IP  + N   L ++ LSNN+ 
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  313 bits (805), Expect = 1e-99
 Identities = 131/455 (28%), Positives = 205/455 (45%), Gaps = 32/455 (7%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
                  L HL++S N L G     I   + L+ L++ SNQ  G IP     L  L+ L 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
              N+  G IP  + G                  L    L+ N  + ++P   G+ + L 
Sbjct: 276 LAENKFTGEIPDFLSGACD--------------TLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 121 TMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ-LDLSENQLI 178
           ++ LS N FSG +P+ +L  +  L  L L  N FSG +P  + NL + L  LDLS N   
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 179 GSIPLSFGN--LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL 236
           G I  +      ++L  + L NN  +G +PP L N   L +L L  N LSG IPSS+G+L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH 296
           S LR L L+ N L   +P+E+ Y+ +L  L L  N L+G IP  + N T L  +++  N 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 297 LSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDS 351
           L+G IPK    L ++  + L+ N+ SG +     +   L    ++ N  + +IP  +   
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK- 560

Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL--NLNQLSGGMPLELGSLIELQYLDLST 409
              Q   +++N I G+  V +       +     NL +  G    +L  L      ++++
Sbjct: 561 ---QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 410 NKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
                    +  N   + +LD+S N     I  E+
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  297 bits (762), Expect = 3e-93
 Identities = 133/426 (31%), Positives = 189/426 (44%), Gaps = 25/426 (5%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQ-IGNLSNLQYLDLGSNQLSGVIPLEIGHL-NQLRIL 60
           F S   L  L LS N   G +P   +  +  L+ LDL  N+ SG +P  + +L   L  L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
               N   G I   + Q                 L   YL NN     IP  L N + L 
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNT------------LQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
           ++ LS N  SG+IP SLG+LS L  L L+ N   G IP  +  +K+L  L L  N L G 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR 240
           IP    N ++L  +SL NN L+G +P  +G L++L+ L L  N  SG IP+ +G+  SL 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN--HLS 298
            L L  N     +P  +   +      +  N ++G     I N       +   N     
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 299 GPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPK 353
           G   +    L++     +      G       N   +    +S N +S  IP EIG  P 
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413
           L +L+L  N+I G IP ++G L  LN L L+ N+L G +P  + +L  L  +DLS N L 
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

Query: 414 SSIPKS 419
             IP+ 
Sbjct: 718 GPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  278 bits (714), Expect = 2e-86
 Identities = 118/437 (27%), Positives = 183/437 (41%), Gaps = 35/437 (8%)

Query: 29  NLSNLQYLDLGSNQLS---GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85
               +  +DL S  L+     +   +  L  L  L+   + ++GS+       + +  L 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 86  LCHNYFV------------CNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGS 132
           L  N                 L    +++N+L     +     LNSL  +DLS N  SG+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 133 IPLSL---GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLS 189
             +          L  L +  N  SG +   +    +L  LD+S N     IP   G+ S
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCS 223

Query: 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 249
           +L  + +  N LSG     +     L  L +  NQ  G IP     L SL+ L L  N  
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281

Query: 250 YSFVPEEIRY-LTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK-SFKN 307
              +P+ +     +L+ L+L  NH  G +P   G+ + L  L +  N+ SG +P  +   
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 308 LTSVERVLLNQNNLSGKV------NVPKLGTFIISVNNISESIPPEIGDSPK--LQVLDL 359
           +  ++ + L+ N  SG++          L T  +S NN S  I P +  +PK  LQ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 360 SSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKS 419
            +N   G+IP  L     L  L L+ N LSG +P  LGSL +L+ L L  N L+  IP+ 
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 420 IGNLLRLCYLDLSNNQF 436
           +  +  L  L L  N  
Sbjct: 462 LMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  260 bits (666), Expect = 2e-79
 Identities = 110/371 (29%), Positives = 161/371 (43%), Gaps = 39/371 (10%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
              +    L  L L  N   G IPP + N S L  L L  N LSG IP  +G L++LR L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
              +N L G IP E+  +                L    L+ N L   IP  L N  +L+
Sbjct: 448 KLWLNMLEGEIPQELMYV--------------KTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
            + LS N+ +G IP  +G L NL  L L +NSFSG+IP+ +G+ +SL+ LDL+ N   G+
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHIN--QLSGVIPSSIGNLSS 238
           IP +    S      +  N ++G     + N           N  +  G+    +  LS+
Sbjct: 554 IPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298
                + +               S+  L++  N LSG IP  IG++  L +LN+  N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 299 GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLD 358
           G IP    +L  +  + L+ N L G                    IP  +     L  +D
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDG-------------------RIPQAMSALTMLTEID 710

Query: 359 LSSNNIVGEIP 369
           LS+NN+ G IP
Sbjct: 711 LSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  241 bits (618), Expect = 2e-72
 Identities = 104/366 (28%), Positives = 172/366 (46%), Gaps = 22/366 (6%)

Query: 87  CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKL 146
           C +  V ++       N  F+++   L +L  L ++ LS +  +GS+       ++L  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSL 105

Query: 147 YLYSNSFSGSIPSI--IGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSG 203
            L  NS SG + ++  +G+   L  L++S N L     +S    L+SL ++ L  NS+SG
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 204 SLPP---ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
           +      +      L  L +  N++SG +   +    +L  L + +N   + +P  +   
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320
           ++L  L++  N LSG    +I   T L LLN+  N   GPIP     L S++ + L +N 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 321 LSGKV------NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ-LG 373
            +G++          L    +S N+   ++PP  G    L+ L LSSNN  GE+P+  L 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 374 KLFSLNKLILNLNQLSGGMPLELGSL-IELQYLDLSTNKLKSSIPKSIGNLLR--LCYLD 430
           K+  L  L L+ N+ SG +P  L +L   L  LDLS+N     I  ++    +  L  L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 431 LSNNQF 436
           L NN F
Sbjct: 401 LQNNGF 406

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 2e-19
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 24/185 (12%)

Query: 260 LTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319
           +TS+       N     +  S+ +LTGL  L +  +H++G +   FK   S+  + L++N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 320 NLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLG-KLFSL 378
           +LSG V                 +    +G    L+ L++SSN +     V  G KL SL
Sbjct: 111 SLSGPV-----------------TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

Query: 379 NKLILNLNQLSGGMPLEL---GSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
             L L+ N +SG   +         EL++L +S NK+   +   +   + L +LD+S+N 
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211

Query: 436 FGHKI 440
           F   I
Sbjct: 212 FSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 8e-13
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP--LE 395
           N    ++   +     L+ L LS+++I G +        SL  L L+ N LSG +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 396 LGSLIELQYLDLSTNKLKSSIPKSIG-NLLRLCYLDLSNNQFGHKILVEL 444
           LGS   L++L++S+N L      S G  L  L  LDLS N      +V  
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 350 DSPKLQVLDLSSNNI---VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD 406
              K+  +DLSS  +      +   L  L  L  L L+ + ++G +         L  LD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 407 LSTNKLKSSIP--KSIGNLLRLCYLDLSNNQFGHKI 440
           LS N L   +    S+G+   L +L++S+N      
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  231 bits (591), Expect = 3e-69
 Identities = 104/457 (22%), Positives = 163/457 (35%), Gaps = 40/457 (8%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
             ++  LNL+ N L  +        S L  LD+G N +S + P     L  L++L    N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
           +L           +              NL   +L +NS+            +L T+DLS
Sbjct: 84  ELSQLSDKTFAFCT--------------NLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 126 QNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLK--SLLQLDLSENQLIGSIPL 183
            N  S +   +   L NL +L L +N         +      SL +L+LS NQ+    P 
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILG---NLKSLSALGLHINQLSGVIPSSIGNL--SS 238
            F  +  L  + L N  L  SL   L       S+  L L  +QLS    ++   L  ++
Sbjct: 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN--- 295
           L  L L  N L     +   +L  L    L  N++  +  HS+  L  +  LN+  +   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 296 ------HLSGPIPKSFKNLTSVERVLLNQNNLSG-----KVNVPKLGTFIISVNNISESI 344
                  L      SF+ L  +E + +  N++ G        +  L    +S +  S   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 345 PPEIG----DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSL 399
                        L +L+L+ N I          L  L  L L LN++   +   E   L
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
             +  + LS NK       S   +  L  L L     
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (569), Expect = 4e-66
 Identities = 108/463 (23%), Positives = 171/463 (36%), Gaps = 42/463 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F+ +  L  L++ FN +  + P     L  L+ L+L  N+LS +          L  L+
Sbjct: 44  NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
              N +         +                NL    L++N L ++       L +L  
Sbjct: 104 LMSNSIQKIKNNPFVKQK--------------NLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 122 MDLSQNQFSGSIP--LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
           + LS N+        L +   S+L KL L SN      P     +  L  L L+  QL  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 180 SIPLSFG---NLSSLTLMSLFNNSLSGSLPPILGNLK--SLSALGLHINQLSGVIPSSIG 234
           S+          +S+  +SL N+ LS +       LK  +L+ L L  N L+ V   S  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN---------HLSGVIPHSIGNLT 285
            L  L   +L  N +       +  L ++  L L  +          L  +   S   L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK---------VNVPKLGTFIIS 336
            L  LNM +N + G     F  L +++ + L+ +  S +         +    L    ++
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 337 VNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLE 395
            N IS+           L+VLDL  N I  E+  Q    L ++ ++ L+ N+        
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 396 LGSLIELQYLDLSTNKLKS--SIPKSIGNLLRLCYLDLSNNQF 436
              +  LQ L L    LK+  S P     L  L  LDLSNN  
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (540), Expect = 6e-62
 Identities = 96/468 (20%), Positives = 161/468 (34%), Gaps = 43/468 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIG---HLNQL 57
               +   L  L LS N +    P     +  L  L L + QL   +  ++        +
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 58  RILYFDVNQLHGSIPLEIGQLSLIN--VLALCHNYFVC----------NLANFYLNNNSL 105
           R L    +QL  +       L   N  +L L +N               L  F+L  N++
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 106 FNSIPLVLGNLNSLSTMDLSQNQFSGSI---------PLSLGNLSNLDKLYLYSNSFSGS 156
            +     L  L ++  ++L ++    SI           S   L  L+ L +  N   G 
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 157 IPSIIGNLKSLLQLDLSENQL----IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
             ++   L +L  L LS +      + +        S L +++L  N +S         L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 213 KSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271
             L  L L +N++   +       L ++  +YL  N            + SL  L L   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 272 HLSGV--IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPK 329
            L  V   P     L  L +L++  N+++       + L  +E + L  NNL+       
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA------- 517

Query: 330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389
                +  +         +     L +L+L SN            LF L  + L LN L+
Sbjct: 518 ----RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 390 GGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR-LCYLDLSNNQF 436
                   + + L+ L+L  N + S   K  G   R L  LD+  N F
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  192 bits (489), Expect = 1e-54
 Identities = 83/370 (22%), Positives = 140/370 (37%), Gaps = 24/370 (6%)

Query: 93  CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
            +      ++  L   +P  L    +++ ++L+ NQ       +    S L  L +  N+
Sbjct: 4   VSHEVADCSHLKL-TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
            S   P +   L  L  L+L  N+L      +F   ++LT + L +NS+           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL--TSLSELELCT 270
           K+L  L L  N LS     +   L +L+ L L NN + +   EE+     +SL +LEL +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK---NLTSVERVLLNQNNLSG---- 323
           N +    P     +  L  L +    L   + +        TS+  + L+ + LS     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 324 ---KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNK 380
               +    L    +S NN++          P+L+   L  NNI       L  LF++  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 381 LILN---------LNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDL 431
           L L          L  L          L  L++L++  N +          L+ L YL L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 432 SNNQFGHKIL 441
           SN+    + L
Sbjct: 361 SNSFTSLRTL 370

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  176 bits (449), Expect = 5e-49
 Identities = 86/413 (20%), Positives = 147/413 (35%), Gaps = 26/413 (6%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F    + +L  L+LS+N L  +       L  L+Y  L  N +  +    +  L  +R L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
               +    S  + +  L  I+  +         L +  + +N +      +   L +L 
Sbjct: 302 NLKRSFTKQS--ISLASLPKIDDFSFQWLK---CLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 121 TMDLSQNQFSGSIP----LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ 176
            + LS +  S              S L  L L  N  S         L  L  LDL  N+
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 177 LIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV--IPSSI 233
           +   +    +  L ++  + L  N            + SL  L L    L  V   PS  
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS--------GVIPHSIGNLT 285
             L +L  L L NN + +   + +  L  L  L+L  N+L+        G   + +  L+
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-----VNVPKLGTFIISVNNI 340
            L +LN+  N       + FK+L  ++ + L  NNL+        N   L +  +  N I
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 341 SESIPPEIGDSPK-LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM 392
           +       G + + L  LD+  N            +  +N+   N+ +LS   
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  229 bits (586), Expect = 7e-69
 Identities = 83/469 (17%), Positives = 149/469 (31%), Gaps = 55/469 (11%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSG----VIPLEIGHLNQLR 58
            +S   +  L+L      G +P  IG L+ L+ L LGS+          P  I       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNS 118
                      +      +                +L    +N++    SI         
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFS------------DLIKDCINSDPQQKSIKKSSRITLK 184

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
            + +    N  +  +  ++  L+ L + Y+ ++ F                 +    Q  
Sbjct: 185 DTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQY 238

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL--------SGVIP 230
            +  L + NL  LT + ++N      LP  L  L  +  + +  N+              
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 231 SSIGNLSSLRALYLYNNGLYSF-VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289
           +       ++ +Y+  N L +F V   ++ +  L  LE   N L G +P + G+   L  
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357

Query: 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS------GKVNVPKLGTFIISVNNIS-- 341
           LN+  N ++            VE +    N L          +V  +     S N I   
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 342 -----ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG------ 390
                + + P       +  ++LS+N I             L+ + L  N L+       
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 391 -GMPLELGSLIELQYLDLSTNKLKSSIPKSI--GNLLRLCYLDLSNNQF 436
                   +   L  +DL  NKL + +        L  L  +DLS N F
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  222 bits (569), Expect = 2e-66
 Identities = 68/469 (14%), Positives = 149/469 (31%), Gaps = 63/469 (13%)

Query: 5   SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV 64
            F  L+   ++ +     I            +   SN ++  +   +  L +LR  Y   
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN 215

Query: 65  NQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDL 124
           +        E  +                            + +  L   NL  L+ +++
Sbjct: 216 SPFVAENICEAWENEN-------------------SEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 125 SQNQFSGSIPLSLGNLSNLDKLYLYSNSF--------SGSIPSIIGNLKSLLQLDLSENQ 176
                   +P  L  L  +  + +  N               +     + +  + +  N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 177 LI-GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
           L    +  S   +  L ++    N L G   P  G+   L++L L  NQ++ +  +  G 
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGF 375

Query: 236 LSSLRALYLYNNGLYSFVPE-EIRYLTSLSELELCTNHLSGV-------IPHSIGNLTGL 287
              +  L   +N L       + + ++ +S ++   N +  V       +  +      +
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------------NVPKLGTFII 335
             +N+  N +S    + F   + +  + L  N L+               N   L +  +
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 336 SVNNISESIPPEIGDS--PKLQVLDLSSNNIVGEIPVQLGKLFSL------NKLILNLNQ 387
             N ++  +  +   +  P L  +DLS N+   + P Q     +L      N+     N+
Sbjct: 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 388 LSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
                P  +     L  L + +N +   + + I   +    LD+ +N  
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNIS--VLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (533), Expect = 3e-61
 Identities = 67/498 (13%), Positives = 139/498 (27%), Gaps = 82/498 (16%)

Query: 2   AFSSFPHLVHLNLSFNILFG----IIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLN-- 55
           A      L  L L  +          P  I    + +                    +  
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 56  QLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC---------NLANFYLNNNSLF 106
            L     + +    SI            +    N              L  FY+ N+   
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS 166
                      +         Q   +  L   NL +L  + +Y+      +P+ +  L  
Sbjct: 220 AENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 167 LLQLDLSENQLIG---------------------------------SIPLSFGNLSSLTL 193
           +  ++++ N+ I                                   +  S   +  L +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 194 MSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV 253
           +    N L G   P  G+   L++L L  NQ++ +  +  G    +  L   +N L    
Sbjct: 335 LECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 254 PE-EIRYLTSLSELELCTNHLSGV-------IPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
              + + ++ +S ++   N +  V       +  +      +  +N+  N +S    + F
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 306 KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV 365
              + +  + L  N L+                N  +       ++  L  +DL  N + 
Sbjct: 454 STGSPLSSINLMGNMLTE------------IPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 366 GEIP-VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS------SIPK 418
                 +   L  L  + L+ N  S   P +  +   L+   +   +           P+
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 419 SIGNLLRLCYLDLSNNQF 436
            I     L  L + +N  
Sbjct: 561 GITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  205 bits (524), Expect = 7e-60
 Identities = 66/421 (15%), Positives = 140/421 (33%), Gaps = 41/421 (9%)

Query: 9   LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
             + N  +   +     +  NL +L  +++ +      +P  +  L +++++    N+  
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 69  GSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQN 127
            S          +    +        +   Y+  N+L    +   L  +  L  ++   N
Sbjct: 287 -SGEQLKDDWQALADAPVGEK-----IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 128 QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG-SIPLSFG 186
           Q  G +P + G+   L  L L  N  +    +  G  + +  L  + N+L          
Sbjct: 341 QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 187 NLSSLTLMSLFNNSLSG-------SLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
           ++S ++ +    N +          L P      ++S++ L  NQ+S          S L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 240 RALYLYNNGL-------YSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLN 291
            ++ L  N L            E  +    L+ ++L  N L+ +        L  L+ ++
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 292 MCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS 351
           +  N  S   P    N ++++   +                     N      P  I   
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQ-------------RDAQGNRTLREWPEGITLC 565

Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411
           P L  L + SN+I   +  ++    +++ L +  N         +   IE     L  +K
Sbjct: 566 PSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 412 L 412
            
Sbjct: 623 T 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  173 bits (441), Expect = 4e-48
 Identities = 58/347 (16%), Positives = 115/347 (33%), Gaps = 25/347 (7%)

Query: 97  NFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG- 155
           NF    +       + L +   ++ + L     SG +P ++G L+ L+ L L S+     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 156 ---SIPSIIGNLKSLLQLDLSENQLIGSIP--LSFGNLSSLTLMSLFNNSLSGSLPPILG 210
                P  I    S  Q          +        + S L    + ++    S+     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 211 NLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT 270
                + +G   N ++  +  ++  L+ LR  Y+ N+   +    E     +        
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----Y 234

Query: 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKL 330
                       NL  L  + +        +P   K L  ++ + +  N       +   
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI-VGEIPVQLGKLFSLNKLILNLNQLS 389
                           +     K+Q++ +  NN+    +   L K+  L  L    NQL 
Sbjct: 295 W-----------QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 390 GGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           G +P   GS I+L  L+L+ N++        G   ++  L  ++N+ 
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (406), Expect = 2e-43
 Identities = 63/363 (17%), Positives = 119/363 (32%), Gaps = 48/363 (13%)

Query: 2   AFSSFPHLVHLNLSFN--------ILFGIIPPQIGNLSNLQYLDLGSNQL-SGVIPLEIG 52
              + P +  +N++ N                       +Q + +G N L +  +   + 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 53  HLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC----------NLANFYLNN 102
            + +L +L    NQL G +P   G    +  L L +N               + N    +
Sbjct: 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 103 NSLFNSIP--LVLGNLNSLSTMDLSQNQFSG-------SIPLSLGNLSNLDKLYLYSNSF 153
           N L   IP      +++ +S +D S N+           +  +     N+  + L +N  
Sbjct: 387 NKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 154 SGSIPSIIGNLKSLLQLDLSENQL-------IGSIPLSFGNLSSLTLMSLFNNSLSGSLP 206
           S     +      L  ++L  N L       +     +F N   LT + L  N L+    
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505

Query: 207 PI-LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF------VPEEIRY 259
                 L  L  + L  N  S   P+   N S+L+   + N             PE I  
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 260 LTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319
             SL++L++ +N +   +   I     + +L++ +N                   +L  +
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 320 NLS 322
              
Sbjct: 622 KTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (339), Expect = 2e-34
 Identities = 39/309 (12%), Positives = 96/309 (31%), Gaps = 16/309 (5%)

Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
           L +++   N  + S         +    +   +       +S  +   +T +SL     S
Sbjct: 35  LKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGAS 94

Query: 203 GSLPPILGNLKSLSALGLHINQLSG----VIPSSIGNLSSLRALYLYNNGLYSFVPEEI- 257
           G +P  +G L  L  L L  +          P  I    S                +   
Sbjct: 95  GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154

Query: 258 -RYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 316
               + L +  + ++     I  S         +    N+++  + K+   LT + +  +
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYM 213

Query: 317 NQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLF 376
             +    +                 ++   +  +   L  +++ +   + ++P  L  L 
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 377 SLNKLILNLNQL--------SGGMPLELGSLIELQYLDLSTNKLKS-SIPKSIGNLLRLC 427
            +  + +  N+               +     ++Q + +  N LK+  +  S+  + +L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 428 YLDLSNNQF 436
            L+   NQ 
Sbjct: 334 MLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (280), Expect = 2e-26
 Identities = 45/261 (17%), Positives = 78/261 (29%), Gaps = 49/261 (18%)

Query: 1   FAFSSFPHLVHLNLSFNIL-------FGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGH 53
           F   S   +  ++ S+N +       F  + P      N+  ++L +NQ+S         
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 54  LNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVL 113
            + L  +    N L   IP                                         
Sbjct: 456 GSPLSSINLMGNMLTE-IPKNS------------------------------LKDENENF 484

Query: 114 GNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL----- 167
            N   L+++DL  N+ +          L  L  + L  NSFS   P+   N  +L     
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 168 -LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
             Q D   N+ +   P       SLT + + +N +      I  N+  L    +  N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD---IKDNPNI 600

Query: 227 GVIPSSIGNLSSLRALYLYNN 247
            +  S +          L+ +
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 18/167 (10%)

Query: 280 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNN 339
           S+ +   +  L++     SG +P +   LT +E + L  +                   N
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV---------------N 120

Query: 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL--FSLNKLILNLNQLSGGMPLELG 397
                P  I  +   +       +          +     L K  +N +     +     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 398 SLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
             ++   +   +N + + + K++  L +L    + N+ F  + + E 
Sbjct: 181 ITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  217 bits (556), Expect = 9e-68
 Identities = 78/306 (25%), Positives = 123/306 (40%), Gaps = 46/306 (15%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGV--IPLEIGHLNQLRILYF-DVNQLH 68
            +       G++         +  LDL    L     IP  + +L  L  LY   +N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 69  GSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQ 128
           G IP  I +L+               L   Y+ + ++  +IP  L  + +L T+D S N 
Sbjct: 91  GPIPPAIAKLT--------------QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 129 FSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ-LDLSENQLIGSIPLSFGN 187
            SG++P S+ +L NL  +    N  SG+IP   G+   L   + +S N+L G IP +F N
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L +L  + L  N L G    + G+ K+   + L  N L+  +   +G   +L  L L N 
Sbjct: 197 L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN- 253

Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS--F 305
                                  N + G +P  +  L  L  LN+  N+L G IP+    
Sbjct: 254 -----------------------NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 306 KNLTSV 311
           +     
Sbjct: 291 QRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  209 bits (535), Expect = 1e-64
 Identities = 87/335 (25%), Positives = 137/335 (40%), Gaps = 54/335 (16%)

Query: 108 SIPLVLGNLNSLS----TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS--IPSII 161
            I   LGN  +LS    T D     + G +  +      ++ L L   +      IPS +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 162 GNLKSLLQLDLS-ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220
            NL  L  L +   N L+G IP +   L+ L  + + + ++SG++P  L  +K+L  L  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 221 HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHS 280
             N LSG +P SI +L +L  +    N                         +SG IP S
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGN------------------------RISGAIPDS 168

Query: 281 IGNLTGLL-LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNN 339
            G+ + L   + +  N L+G IP +F NL                     L    +S N 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL--------------------NLAFVDLSRNM 208

Query: 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399
           +        G     Q + L+ N++  ++  ++G   +LN L L  N++ G +P  L  L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
             L  L++S N L   IP+  GNL R      +NN
Sbjct: 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  204 bits (522), Expect = 8e-63
 Identities = 76/248 (30%), Positives = 113/248 (45%), Gaps = 19/248 (7%)

Query: 2   AFSSFPHLVHLNLS-FNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           + ++ P+L  L +   N L G IPP I  L+ L YL +    +SG IP  +  +  L  L
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
            F  N L G++P  I  L               NL     + N +  +IP   G+ + L 
Sbjct: 131 DFSYNALSGTLPPSISSLP--------------NLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 121 T-MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
           T M +S+N+ +G IP +  NL NL  + L  N   G    + G+ K+  ++ L++N L  
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
            +    G   +L  + L NN + G+LP  L  LK L +L +  N L G IP   GNL   
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293

Query: 240 RALYLYNN 247
                 NN
Sbjct: 294 DVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  203 bits (519), Expect = 2e-62
 Identities = 81/378 (21%), Positives = 139/378 (36%), Gaps = 88/378 (23%)

Query: 23  IPPQIGNLSNLQ----YLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQL 78
           I   +GN + L       D  +    GV+        ++  L      L    P      
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP------ 67

Query: 79  SLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS-QNQFSGSIPLSL 137
                                         IP  L NL  L+ + +   N   G IP ++
Sbjct: 68  ------------------------------IPSSLANLPYLNFLYIGGINNLVGPIPPAI 97

Query: 138 GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF 197
             L+ L  LY+   + SG+IP  +  +K+L+ LD S N L G++P S  +L +L  ++  
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 198 NNSLSGSLPPILGNLKSLS-ALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEE 256
            N +SG++P   G+   L  ++ +  N+L+G IP +  NL                    
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------------- 197

Query: 257 IRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 316
                +L+ ++L  N L G      G+      +++ +N L+  +        ++  + L
Sbjct: 198 -----NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDL 251

Query: 317 NQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLF 376
             N + G                   ++P  +     L  L++S NN+ GEIP Q G L 
Sbjct: 252 RNNRIYG-------------------TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291

Query: 377 SLNKLILNLNQLSGGMPL 394
             +      N+   G PL
Sbjct: 292 RFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (357), Expect = 1e-38
 Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 14/193 (7%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL-RILY 61
            S    LV L+ S+N L G +PP I +L NL  +    N++SG IP   G  ++L   + 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVC----------NLANFYLNNNSLFNSIPL 111
              N+L G IP     L+L   + L  N              N    +L  NSL   +  
Sbjct: 181 ISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238

Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171
            +G   +L+ +DL  N+  G++P  L  L  L  L +  N+  G IP   GNL+      
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297

Query: 172 LSENQLIGSIPLS 184
            + N+ +   PL 
Sbjct: 298 YANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  116 bits (293), Expect = 1e-29
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 23/173 (13%)

Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG--PIPKSFKNLTSVERV-LLNQNNLSGK 324
            C     GV+  +      +  L++   +L    PIP S  NL  +  + +   NNL G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG- 91

Query: 325 VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN 384
                              IPP I    +L  L ++  N+ G IP  L ++ +L  L  +
Sbjct: 92  ------------------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 385 LNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC-YLDLSNNQF 436
            N LSG +P  + SL  L  +    N++  +IP S G+  +L   + +S N+ 
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  215 bits (548), Expect = 5e-62
 Identities = 80/467 (17%), Positives = 152/467 (32%), Gaps = 51/467 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
              +   +  L+L+     G +P  IG L+ L+ L  G++  +    L         +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 62  FDVNQLHGSI-PLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
              +++      + +     +N+  L        L +    N  +         +L    
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDL--------LQDAINRNPEMKPIKKDSRISLKDTQ 429

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
             +L+       I  ++  L+ L  +Y  ++ F+    ++          +    +   +
Sbjct: 430 IGNLTNR--ITFISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYEN 482

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV---------IPS 231
             LS+ NL  LT + L+N      LP  L +L  L +L +  N+             +  
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 232 SIGNLSSLRALYLYNNGLYSFVPE-EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
                  ++  Y+  N L  F     ++ +  L  L+   N +      + G    L  L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDL 600

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLS------GKVNVPKLGTFIISVNNISESI 344
            +  N +             VE +  + N L          +V  +G+   S N I  S 
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-SE 659

Query: 345 PPEIGDSP------KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS-------GG 391
              I  S           + LS N I             ++ +IL+ N ++         
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 392 MPLELGSLIELQYLDLSTNKLKSSIPKSI--GNLLRLCYLDLSNNQF 436
                 +   L  +DL  NKL +S+        L  L  +D+S N F
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  200 bits (509), Expect = 1e-56
 Identities = 59/457 (12%), Positives = 143/457 (31%), Gaps = 47/457 (10%)

Query: 11  HLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGS 70
            + + +  +F     ++     LQ     + ++  +       L   +I     N++   
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRIT-F 439

Query: 71  IPLEIGQLSLINVLALCHNYFVC-----NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
           I   I +L+ + ++   ++ F       +  +   +    + +  L   NL  L+ ++L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 126 QNQFSGSIPLSLGNLSNLDKLYLYSNSFSG---------SIPSIIGNLKSLLQLDLSENQ 176
                  +P  L +L  L  L +  N              +         +    +  N 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 177 LIG-SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
           L       S   +  L L+   +N +        G    L+ L L  NQ+  +       
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAF 617

Query: 236 LSSLRALYLYNNGLYSFVPE-EIRYLTSLSELELCTNHLSGVIPH-----SIGNLTGLLL 289
              +  L   +N L         + +  +  ++   N +     +               
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIG 349
           + +  N +     + F   + +  ++L+ N ++   ++P+         N  +       
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT---SIPE---------NSLKPKDGNYK 725

Query: 350 DSPKLQVLDLSSNNIVGEIP--VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL 407
           ++  L  +DL  N +   +    +   L  L+ + ++ N  S   P +  +  +L+   +
Sbjct: 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783

Query: 408 ------STNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
                   N++    P  I     L  L + +N    
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  182 bits (463), Expect = 2e-50
 Identities = 68/421 (16%), Positives = 126/421 (29%), Gaps = 41/421 (9%)

Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
                N  +   +        NL +L  ++L +      +P  +  L +L+ L    N+ 
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 68  HGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQ 126
             +  L+     L +            +  FY+  N+L        L  +  L  +D   
Sbjct: 528 ISAAQLKADWTRLADDEDTGP-----KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 127 NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP--LS 184
           N+    +  + G    L  L L  N               +  L  S N+L   IP   +
Sbjct: 583 NKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFN 639

Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILG-----NLKSLSALGLHINQLSGVIPSSIGNLSSL 239
             ++  +  +    N +      I          + S + L  N++           S +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 240 RALYLYNNGL-------YSFVPEEIRYLTSLSELELCTNHLSGVIPH-SIGNLTGLLLLN 291
             + L NN +               +    L+ ++L  N L+ +        L  L  ++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 292 MCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS 351
           +  N  S   P    N + ++   +                     N I    P  I   
Sbjct: 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------------DAEGNRILRQWPTGITTC 805

Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411
           P L  L + SN+I  ++  +L     L  L +  N         +   IE     L  +K
Sbjct: 806 PSLIQLQIGSNDI-RKVDEKLTP--QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

Query: 412 L 412
            
Sbjct: 863 T 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (323), Expect = 5e-32
 Identities = 40/332 (12%), Positives = 102/332 (30%), Gaps = 32/332 (9%)

Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
                 +D    ++      +  +  N +      + +       + N   +  L L+  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS-SIG 234
              G +P + G L+ L ++S   +S + S         +        +++        + 
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
               L    L  + +                       +  +   S  +L    + N+  
Sbjct: 394 YDQRLNLSDLLQDAINRN------------------PEMKPIKKDSRISLKDTQIGNL-T 434

Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKL 354
           N ++  I K+ + LT ++ +    +  +                   E+      +   L
Sbjct: 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG---------GMPLELGSLIELQYL 405
             ++L +   + ++P  L  L  L  L +  N+             +  +  +  ++Q  
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 406 DLSTNKLKS-SIPKSIGNLLRLCYLDLSNNQF 436
            +  N L+      S+  +++L  LD  +N+ 
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (251), Expect = 8e-23
 Identities = 42/239 (17%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIP-----PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLN 55
           F   S   +  ++ S+N +                 N   + L  N++           +
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 56  QLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP--LVL 113
            +  +    N +  SIP    +    N            L    L  N L  S+      
Sbjct: 698 PISTIILSNNLM-TSIPENSLKPKDGNYKNT------YLLTTIDLRFNKL-TSLSDDFRA 749

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYL------YSNSFSGSIPSIIGNLKSL 167
             L  LS MD+S N FS S P    N S L    +        N      P+ I    SL
Sbjct: 750 TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
           +QL +  N +   +         L ++ + +N         +          L  ++  
Sbjct: 809 IQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (509), Expect = 5e-58
 Identities = 100/462 (21%), Positives = 167/462 (36%), Gaps = 29/462 (6%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F S   L  L L+ N L  +    +     L++L      +S +  + + +   L  LY
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFV----------CNLANFYLNNNSLF-NSIP 110
              N +      +      + VL   +N                 N  LN N      I 
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGN--LSNLDKLYLYSNSFSGSIPSIIGNLK--S 166
               +     +++    Q    I   L N  + +L              P++   L   S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
           +  ++L ++        +F   S L  + L    LS  LP  L  L +L  L L  N+  
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 227 GVIPSSIGNLSSLRALYLYNNGLYSFVPEE-IRYLTSLSELELCTNHL--SGVIPHSIGN 283
            +   S  N  SL  L +  N     +    +  L +L EL+L  + +  S      + N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 284 LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK------VNVPKLGTFIISV 337
           L+ L  LN+  N       ++FK    +E + L    L  K       N+  L    +S 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ---LGKLFSLNKLILNLNQLSGGMPL 394
           + +  S        P LQ L+L  N+       +   L  L  L  L+L+   LS     
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
              SL  + ++DLS N+L SS  +++ +L  + YL+L++N  
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  198 bits (506), Expect = 1e-57
 Identities = 94/454 (20%), Positives = 169/454 (37%), Gaps = 37/454 (8%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
              +   L  L L  N +  I  P+      L+ LD  +N +  +   ++  L Q   L 
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 62  FDVNQLH-GSIPLEIGQLSLINVLALCHNYFVC------------NLANFYLNNNSLFNS 108
            ++N      I       ++   L       +             +L      +    + 
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 109 IPLVLGNL--NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS 166
            P V   L   S+ +++L ++ F      +    S L +L L +   S  +PS +  L +
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST 302

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQL 225
           L +L LS N+      +S  N  SLT +S+  N+    L    L NL++L  L L  + +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 226 --SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-G 282
             S      + NLS L++L L  N   S   E  +    L  L+L    L      S   
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE 342
           NL  L +LN+  + L     + F  L +++ + L  N+                    + 
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK----------------GNI 466

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
                +    +L++L LS  ++          L  +N + L+ N+L+      L  L  +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            YL+L++N +   +P  +  L +   ++L  N  
Sbjct: 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (499), Expect = 1e-56
 Identities = 86/458 (18%), Positives = 150/458 (32%), Gaps = 28/458 (6%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                 L  SFN+L  I       L NL +LDL   Q+  +        ++L  L    N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVC----------NLANFYLNNNSLFNSIPLVLGN 115
            L       +     +  L                    L + YL +N + +        
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY-SNSFSGSIPSIIGNLKSLLQLDLSE 174
              L  +D   N         + +L     L L  + +    I     +      L+   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 175 NQLIGSIP--LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLS--ALGLHINQLSGVIP 230
            Q +  I   L    + SL L +  +       P +   L  +S  ++ L  +    +  
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
           ++    S L+ L L    L S +P  +  L++L +L L  N    +   S  N   L  L
Sbjct: 272 NTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 291 NMCENHLSGPI-PKSFKNLTSVERVLLNQNNLSGK-------VNVPKLGTFIISVNNISE 342
           ++  N     +     +NL ++  + L+ +++           N+  L +  +S N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVG-EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE 401
                  + P+L++LDL+   +   +       L  L  L L+ + L          L  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 402 LQYLDLSTNKLKSSIPKSIG---NLLRLCYLDLSNNQF 436
           LQ+L+L  N       +       L RL  L LS    
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (426), Expect = 3e-46
 Identities = 84/417 (20%), Positives = 139/417 (33%), Gaps = 31/417 (7%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQ--YLDLGSNQLSGVIPLEIGHLNQLRI 59
                  L  L+   N +  +    + +L       L+L  N ++G I          + 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQS 206

Query: 60  LYFDVNQLHGSIPLEIGQLSLIN--VLALCHNYFV------------CNLANFYLNNNSL 105
           L F   Q    I   +   ++ +  +                      ++ +  L  +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 106 FNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLK 165
           FN         + L  +DL+    S  +P  L  LS L KL L +N F         N  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 166 SLLQLDLSENQLIGSI-PLSFGNLSSLTLMSLFNNSL--SGSLPPILGNLKSLSALGLHI 222
           SL  L +  N     +      NL +L  + L ++ +  S      L NL  L +L L  
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI-RYLTSLSELELCTNHLSGVIPHSI 281
           N+   +   +      L  L L    L     +   + L  L  L L  + L        
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 282 GNLTGLLLLNMCENHLSGPI---PKSFKNLTSVERVLLNQNNLSGK-----VNVPKLGTF 333
             L  L  LN+  NH          S + L  +E ++L+  +LS        ++  +   
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
            +S N ++ S   E     K   L+L+SN+I   +P  L  L     + L  N L  
Sbjct: 506 DLSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (401), Expect = 1e-42
 Identities = 73/350 (20%), Positives = 119/350 (34%), Gaps = 15/350 (4%)

Query: 98  FYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSI 157
           +   N  L N IP  L   NS   ++ S N        +   L NL  L L         
Sbjct: 17  YNCENLGL-NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 158 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSA 217
                +   L  L L+ N LI     +     +L  +      +S      L N K+L +
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS-GV 276
           L L  N +S +          L+ L   NN ++    E++  L   + L L  N      
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS---------GKVNV 327
           I     +      LN         I K  KN T     L    ++            +  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 328 PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ 387
             + +  +  +               LQ LDL++ ++  E+P  L  L +L KL+L+ N+
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANK 312

Query: 388 LSGGMPLELGSLIELQYLDLSTNKLKSSI-PKSIGNLLRLCYLDLSNNQF 436
                 +   +   L +L +  N  +  +    + NL  L  LDLS++  
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (400), Expect = 1e-42
 Identities = 68/436 (15%), Positives = 134/436 (30%), Gaps = 69/436 (15%)

Query: 11  HLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGS 70
             N     L  I P  +   ++ + L+   N L  +       L  L  L          
Sbjct: 16  TYNCENLGLNEI-PGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLD--------- 63

Query: 71  IPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFS 130
                                        L    ++        + + L T+ L+ N   
Sbjct: 64  -----------------------------LTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 131 GSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSS 190
                +L     L  L+      S      + N K+L  L L  N +             
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS-GVIPSSIGNLSSLRALYLYNNGL 249
           L ++   NN++       + +L+  + L L++N      I     + +  ++L       
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 250 YSFVPEEIRY--LTSLSELELCTNHLSGVIPHSIGNLTGLLL--LNMCENHLSGPIPKSF 305
              + + ++   + SL            + P     L  + +  +N+ +++       +F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 306 KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV 365
              + ++ + L   +LS                     +P  +     L+ L LS+N   
Sbjct: 275 HCFSGLQELDLTATHLS--------------------ELPSGLVGLSTLKKLVLSANKFE 314

Query: 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDLSTNKLKSS--IPKSIGN 422
               +      SL  L +  N     +    L +L  L+ LDLS + +++S      + N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 423 LLRLCYLDLSNNQFGH 438
           L  L  L+LS N+   
Sbjct: 375 LSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (393), Expect = 1e-41
 Identities = 78/329 (23%), Positives = 120/329 (36%), Gaps = 21/329 (6%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F       +  +NL  +  F I        S LQ LDL +  LS  +P  +  L+ L+ L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKL 306

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
               N+      +       +  L++  N                       L NL +L 
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGN-------------TKRLELGTGCLENLENLR 353

Query: 121 TMDLSQNQ--FSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
            +DLS +    S    L L NLS+L  L L  N               L  LDL+  +L 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 179 GSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI---PSSIG 234
                S F NL  L +++L ++ L  S   +   L +L  L L  N          +S+ 
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
            L  L  L L    L S        L  ++ ++L  N L+     ++ +L   + LN+  
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLAS 532

Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSG 323
           NH+S  +P     L+    + L QN L  
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 24/218 (11%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
           IP ++   +S   L    N L +        L +L+ L+L    +  +   +  +   L 
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
            L +  N L      +     +++ +   Q                     IS      +
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTG-------------------ISSIDFIPL 125

Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQ--YLD 406
            +   L+ L L SN+I      +      L  L    N +      ++ SL +     L+
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 407 LSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           L+ N + + I     +      L+    Q    I   L
Sbjct: 186 LNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (491), Expect = 2e-55
 Identities = 94/454 (20%), Positives = 158/454 (34%), Gaps = 36/454 (7%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                +L+LSFN L  +      +   LQ LDL   ++  +       L+ L  L    N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
            +          LS              +L        +L +     +G+L +L  ++++
Sbjct: 87  PIQSLALGAFSGLS--------------SLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 126 QNQF-SGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL----LQLDLSENQLIGS 180
            N   S  +P    NL+NL+ L L SN       + +  L  +    L LDLS N +   
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSG------VIPSSI 233
            P +F  +  L  ++L NN  S ++    +  L  L    L + +            S++
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 234 GNLSSLRALYL---YNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
             L +L        Y +     + +    LT++S   L +  +  V   S     G   L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHL 309

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNIS--ESIPPEI 348
            +             K+L  +        N   +V++P L    +S N +S         
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDL 407
             +  L+ LDLS N ++  +      L  L  L    + L          SL  L YLD+
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441
           S    + +       L  L  L ++ N F    L
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (489), Expect = 4e-55
 Identities = 100/469 (21%), Positives = 159/469 (33%), Gaps = 43/469 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           A+ S  HL  L L+ N +  +       LS+LQ L      L+ +    IGHL  L+ L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 62  FDVNQLHG-SIPLEIGQLSLINVLALCHNYFV--------------CNLANFYLNNNSLF 106
              N +    +P     L+ +  L L  N                     +  L+ N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLDKLYLYSNSFSGSI---PSIIG 162
              P     +  L  + L  N  S ++    +  L+ L+   L    F            
Sbjct: 191 FIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 163 NLKSLLQLDLSENQL------IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLS 216
            L+ L  L + E +L      +  I   F  L++++  SL + ++               
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQ 307

Query: 217 ALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS-- 274
            L L   +        + +L  L          +S V      L SL  L+L  N LS  
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSRNGLSFK 362

Query: 275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------NVP 328
           G    S    T L  L++  N +   +  +F  L  +E +    +NL          ++ 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEI-PVQLGKLFSLNKLILNLNQ 387
            L    IS  +   +          L+VL ++ N+      P    +L +L  L L+  Q
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 388 LSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           L    P    SL  LQ L++S N   S        L  L  LD S N  
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (489), Expect = 4e-55
 Identities = 99/469 (21%), Positives = 159/469 (33%), Gaps = 42/469 (8%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGV-IPLEIGHLNQLRIL 60
           AFS    L  L      L  +    IG+L  L+ L++  N +    +P    +L  L  L
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 61  YFDVNQLHGSIPLEIGQLS----LINVLALCHNYFVC---------NLANFYLNNNSL-F 106
               N++      ++  L     L   L L  N              L    L NN    
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPL------SLGNLSNLDKLYL---YSNSFSGSI 157
           N +   +  L  L    L   +F     L      +L  L NL        Y + +   I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 158 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSA 217
             +   L ++    L    +      S+        + L N          L +LK L+ 
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLT- 331

Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLY--SFVPEEIRYLTSLSELELCTNHLSG 275
                    G    S  +L SL  L L  NGL       +     TSL  L+L  N +  
Sbjct: 332 ----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 276 VIPHSIGNLTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLNQNNLSGK-----VNVPK 329
            +  +   L  L  L+   ++L      S F +L ++  + ++  +           +  
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 330 LGTFIISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
           L    ++ N+  E+  P+I  +   L  LDLS   +    P     L SL  L ++ N  
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 389 SGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR-LCYLDLSNNQF 436
                     L  LQ LD S N + +S  + + +    L +L+L+ N F
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  169 bits (429), Expect = 1e-46
 Identities = 94/451 (20%), Positives = 161/451 (35%), Gaps = 44/451 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI- 59
                  L  LN++ N++    +P    NL+NL++LDL SN++  +   ++  L+Q+ + 
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 60  ---LYFDVNQLHGSIPLEIGQLSLINVLALCHNYF-----------VCNLANFYLNNNSL 105
              L   +N ++   P    ++ L + L L +N+            +  L    L     
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 106 FNSIPLV---LGNLNSLSTMDLSQNQFS------GSIPLSLGNLSNLDKLYLYSNSFSGS 156
            N   L       L  L  + + + + +        I      L+N+    L S +    
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 157 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLS 216
                        L+L   +      L   +L  LT       S  G       +L SL 
Sbjct: 298 KD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLE 350

Query: 217 ALGLHINQLS--GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
            L L  N LS  G    S    +SL+ L L  NG+ +        L  L  L+   ++L 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLK 409

Query: 275 GVIPHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------NV 327
            +   S+  +L  L+ L++   H        F  L+S+E + +  N+            +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 328 PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ 387
             L    +S   + +  P        LQVL++S NN           L SL  L  +LN 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 388 LSGGMPLELGSLIE-LQYLDLSTNKLKSSIP 417
           +      EL      L +L+L+ N    +  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (400), Expect = 1e-42
 Identities = 87/448 (19%), Positives = 152/448 (33%), Gaps = 55/448 (12%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQY----LDLGSNQLSGVIPLEIGHLNQL 57
            FS+  +L HL+LS N +  I    +  L  +      LDL  N ++ + P     +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202

Query: 58  RILYFDVNQLHGSIP--------------LEIGQLSLINVLALCHNYFVCNLANFYLNNN 103
             L    N    ++               L +G+      L       +  L N  +   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 104 SL------FNSIPLVLGNLNSLSTMDLSQNQFSGSIPLS-LGNLSNLD------------ 144
            L       + I  +   L ++S+  L           S      +L+            
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 145 ----KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL--IGSIPLSFGNLSSLTLMSLFN 198
                  L   S  G       +L SL  LDLS N L   G    S    +SL  + L  
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 199 NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI-GNLSSLRALYLYNNGLYSFVPEEI 257
           N +   +      L+ L  L    + L  +   S+  +L +L  L + +           
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 258 RYLTSLSELELCTNHLSGVI-PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 316
             L+SL  L++  N       P     L  L  L++ +  L    P +F +L+S++ + +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 317 NQNNLSGK-----VNVPKLGTFIISVNNISESIPPEIGDSPK-LQVLDLSSNNIVGEIPV 370
           + NN           +  L     S+N+I  S   E+   P  L  L+L+ N+       
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 371 Q--LGKLFSLNKLILNLNQLSGGMPLEL 396
           Q  L  +    +L++ + ++    P + 
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (392), Expect = 1e-41
 Identities = 83/385 (21%), Positives = 127/385 (32%), Gaps = 43/385 (11%)

Query: 92  VCNLANFYLNNNSL-FNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS 150
           V  + N       L F  IP  L    S   +DLS N        S  +   L  L L  
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 151 NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILG 210
                       +L  L  L L+ N +      +F  LSSL  +     +L+      +G
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 211 NLKSLSALGLHINQLSGV-IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS----E 265
           +LK+L  L +  N +    +P    NL++L  L L +N + S    ++R L  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 266 LELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGK 324
           L+L  N ++ + P +   +  L  L +  N  S  + K   + L  +E   L       +
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 325 VNVPKLGTFIIS--------------VNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPV 370
            N+ K     +               ++   + I         +    L S  I      
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 371 -----------------QLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL- 412
                            Q   L   +   L      GG       L  L++LDLS N L 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 413 -KSSIPKSIGNLLRLCYLDLSNNQF 436
            K    +S      L YLDLS N  
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGV 385

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 2e-28
 Identities = 54/241 (22%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRI 59
            +      L +L+LSFN +  +       L  L++LD   + L  +    +   L  L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 60  LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSL 119
           L         +       LS + VL +  N F  N              +P +   L +L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-------------LPDIFTELRNL 472

Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
           + +DLSQ Q     P +  +LS+L  L +  N+F          L SL  LD S N ++ 
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 180 SIPLSFGNL-SSLTLMSLFNNSLSGSLP--PILGNLKSLSALGLHINQLSGVIPSSIGNL 236
           S      +  SSL  ++L  N  + +      L  +K    L + + ++    PS    +
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

Query: 237 S 237
            
Sbjct: 593 P 593

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  166 bits (422), Expect = 1e-45
 Identities = 86/463 (18%), Positives = 144/463 (31%), Gaps = 40/463 (8%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                +++LSFN L  +      N S LQ+LDL   ++  +       L+ L  L    N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVC----------NLANFYLNNNSLFN-SIPLVLG 114
            +    P     L+ +  L                    L    + +N + +  +P    
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY---SNSFSGSIPSIIGNLKSLLQLD 171
           NL +L  +DLS N         L  L    ++ L    S +    I         L +L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 172 LSENQLIGSIP-LSFGNLSSLTLMSLFNNSLSGSL------PPILGNLKSLSALGLHI-- 222
           L  N    +I      NL+ L +  L               P I+  L  ++     +  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
                        L+++ A+ L    +     E++        L +    L         
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQF---PTL 325

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG-------KVNVPKLGTFII 335
           +L  L  L +  N  S  I      L S+  + L++N LS         +    L    +
Sbjct: 326 DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 336 SVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPL 394
           S N     +        +LQ LD   + +           L  L  L ++          
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 395 ELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQF 436
               L  L  L ++ N  K +   ++  N   L +LDLS  Q 
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (421), Expect = 1e-45
 Identities = 92/475 (19%), Positives = 147/475 (30%), Gaps = 56/475 (11%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           +FS+F  L  L+LS   +  I       L +L  L L  N +    P     L  L  L 
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN-SIPLVLGNLNSLS 120
               +L       IGQL                L    + +N + +  +P    NL +L 
Sbjct: 111 AVETKLASLESFPIGQLI--------------TLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLY---SNSFSGSIPSIIGNLKSLLQLDLSENQL 177
            +DLS N         L  L    ++ L    S +    I         L +L L  N  
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 178 IGSIP-LSFGNLSSLTLMSLFNNSLSGSL------PPILGNLKSLSALGLHI--NQLSGV 228
             +I      NL+ L +  L               P I+  L  ++     +        
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV------------ 276
                  L+++ A+ L    +     E++        L +    L               
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334

Query: 277 -------IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL--TSVERVLLNQNNLSGK--- 324
                  I      L  L  L++  N LS     S+ +L   S+  + L+ N        
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 325 -VNVPKLGTFIISVNNISESIPPE-IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI 382
            + + +L       + +             KL  LD+S  N   +       L SLN L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 383 LNLNQLSGGMPLE-LGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           +  N            +   L +LDLS  +L+         L RL  L++S+N  
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  158 bits (402), Expect = 6e-43
 Identities = 90/444 (20%), Positives = 151/444 (34%), Gaps = 43/444 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNL----QYLDLGSNQLSGVIPLEIGHLNQL 57
            FS+  +LVH++LS+N +  I    +  L         LD+  N +   I  +     +L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKL 206

Query: 58  RILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLN 117
             L    N    +I     Q        L   +    +   + +  +L    P ++  L 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQ-------NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 118 SLST--MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
            ++     L+         +    L+N+  + L   S    +  +  +      L +   
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHF-KWQSLSIIRC 317

Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
           QL         +L  L  ++L  N  S  +      L SLS L L  N LS     S  +
Sbjct: 318 QLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 236 L--SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHS-IGNLTGLLLLNM 292
           L  +SLR L L  NG    +      L  L  L+   + L  V   S   +L  LL L++
Sbjct: 373 LGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP 352
              +        F  LTS+  + +  N+                      ++     ++ 
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSF------------------KDNTLSNVFANTT 473

Query: 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
            L  LDLS   +          L  L  L ++ N L          L  L  LD S N++
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 413 KSSIPKSIGNLLRLCYLDLSNNQF 436
           ++S          L + +L+NN  
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  138 bits (349), Expect = 9e-36
 Identities = 75/364 (20%), Positives = 125/364 (34%), Gaps = 30/364 (8%)

Query: 92  VCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSN 151
           V     +   +  L + +P  + +  S   +DLS N        S  N S L  L L   
Sbjct: 10  VVPNITYQCMDQKL-SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 66

Query: 152 SFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGN 211
                       L  L  L L+ N +    P SF  L+SL  +      L+      +G 
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 212 LKSLSALGLHINQLSGV-IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS----EL 266
           L +L  L +  N +    +P+   NL++L  + L  N + +    ++++L         L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 267 ELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGKV 325
           ++  N +  +   +   +  L  L +  N  S  I K   +NL  +    L       + 
Sbjct: 187 DMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 326 NVPKLG-------------TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL 372
           N+                  F ++  N       +      +  + L+  +I  +    +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDV 303

Query: 373 GKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS 432
            K F    L +   QL          L  L+ L L+ NK   SI      L  L YLDLS
Sbjct: 304 PKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLS 358

Query: 433 NNQF 436
            N  
Sbjct: 359 RNAL 362

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (343), Expect = 6e-35
 Identities = 63/319 (19%), Positives = 104/319 (32%), Gaps = 26/319 (8%)

Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
            +    L++   F     +   L+N+  + L    +  +  +      + + L     QL
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQL 319

Query: 68  HGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQN 127
                     L  +  L L  N                  SI      L SLS +DLS+N
Sbjct: 320 KQ---FPTLDLPFLKSLTLTMNKG----------------SISFKKVALPSLSYLDLSRN 360

Query: 128 QFSGSIPLSLGNL--SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS- 184
             S S   S  +L  ++L  L L  N     + +    L+ L  LD   + L      S 
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI-GNLSSLRALY 243
           F +L  L  + +   +       I   L SL+ L +  N       S++  N ++L  L 
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 303
           L    L          L  L  L +  N+L  +       L  L  L+   N +      
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

Query: 304 SFKNLTSVERVLLNQNNLS 322
                 S+    L  N+++
Sbjct: 540 LQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (295), Expect = 1e-28
 Identities = 65/296 (21%), Positives = 104/296 (35%), Gaps = 22/296 (7%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIP--LEIGHLNQLR 58
           F     P L  L L+ N     I  +   L +L YLDL  N LS            N LR
Sbjct: 322 FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLN 117
            L    N     +      L  +  L                 +++L          +L 
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHL--------------DFQHSTLKRVTEFSAFLSLE 424

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQ 176
            L  +D+S              L++L+ L +  NSF  +  S +  N  +L  LDLS+ Q
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL 236
           L       F  L  L L+++ +N+L          L SLS L    N++           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNM 292
            SL    L NN +   + E  ++L  + E +    ++  +   +   +   L+L+ 
Sbjct: 545 KSLAFFNLTNNSVAC-ICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDF 599

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.4 bits (230), Expect = 3e-20
 Identities = 58/265 (21%), Positives = 94/265 (35%), Gaps = 28/265 (10%)

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
           GS+      + ++T     +  LS  +P  + +  S   + L  N L  +   S  N S 
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298
           L+ L L    + +   +    L  LS L L  N +    P S   LT L  L   E  L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 299 GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLD 358
                    L +++++ +  N +                   S  +P    +   L  +D
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIH------------------SCKLPAYFSNLTNLVHVD 159

Query: 359 LSSNNIVGEIPVQLGKLFSLNKLILNL----NQLSGGMPLELGSLIELQYLDLSTNKLKS 414
           LS N I       L  L    ++ L+L    N +   +  +    I+L  L L  N   S
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSS 218

Query: 415 SIPK-SIGNLLRLCYLDLSNNQFGH 438
           +I K  + NL  L    L   +F  
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKD 243

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (380), Expect = 1e-40
 Identities = 106/446 (23%), Positives = 184/446 (41%), Gaps = 42/446 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F  ++    +   L    +   +     +L  +  L      +  +    + +LN L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQI 73

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC--------NLANFYLNNNSLFNSIPLV 112
            F  NQL    PL    L+ +  + + +N            NL    L NN + +  P  
Sbjct: 74  NFSNNQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-- 129

Query: 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           L NL +L+ ++LS N  S    LS   L++L +L    N  +   P  + NL +L +LD+
Sbjct: 130 LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSF-GNQVTDLKP--LANLTTLERLDI 184

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232
           S N++  S       L++L  +   NN +S   P  LG L +L  L L+ NQL  +   +
Sbjct: 185 SSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GT 238

Query: 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNM 292
           + +L++L  L L NN + +     +  LT L+EL+L  N +S + P  +  LT L  L +
Sbjct: 239 LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294

Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV---NVPKLGTFIISVNNISESIPPEIG 349
            EN L    P    NL ++  + L  NN+S      ++ KL       N +S+     + 
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409
           +   +  L    N I    P  L  L  + +L LN    +   P+   + + +     + 
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT-NAPVNYKANVSIPNTVKNV 407

Query: 410 NKLKSSIPKSIGNLLRLCYLDLSNNQ 435
                + P +I +       D++ N 
Sbjct: 408 TGALIA-PATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (372), Expect = 2e-39
 Identities = 106/438 (24%), Positives = 175/438 (39%), Gaps = 47/438 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
                 +L  +N S N L  I P  + NL+ L  + + +NQ++ + PL   +L  L  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLT 118

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
              NQ+    PL    L+              NL    L++N++ +   L    L SL  
Sbjct: 119 LFNNQITDIDPL--KNLT--------------NLNRLELSSNTISDISAL--SGLTSLQQ 160

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           +    NQ +   PL   NL+ L++L + SN  S    S++  L +L  L  + NQ+    
Sbjct: 161 LSFG-NQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 215

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           PL  G L++L  +SL  N L       L +L +L+ L L  NQ+S + P  +  L+ L  
Sbjct: 216 PL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L L  N + +     +  LT+L+ LEL  N L  + P  I NL  L  L +  N++S   
Sbjct: 270 LKLGANQISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325

Query: 302 PKSFKNLTSVERVLLNQNNLSGK---VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLD 358
           P    +LT ++R+    N +S      N+  +       N IS+  P  + +  ++  L 
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

Query: 359 LSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK 418
           L+              +   N +      L    P  +         D++ N   S   +
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIA--PATISDGGSYTEPDITWNLP-SYTNE 438

Query: 419 SIGNLLRLCYLDLSNNQF 436
                 +   +      F
Sbjct: 439 VSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (284), Expect = 2e-27
 Identities = 82/327 (25%), Positives = 133/327 (40%), Gaps = 35/327 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             ++   L  L++S N +  I    +  L+NL+ L   +NQ+S + PL  G L  L  L 
Sbjct: 172 PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPL--GILTNLDELS 227

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
            + NQL       +  L+              NL +  L NN + N  P  L  L  L+ 
Sbjct: 228 LNGNQL--KDIGTLASLT--------------NLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           + L  NQ S   PL+   L+ L  L L  N      P  I NLK+L  L L  N +    
Sbjct: 270 LKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           P+S  +L+ L  +  +NN +S      L NL +++ L    NQ+S + P  + NL+ +  
Sbjct: 326 PVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L L +    +        ++  + ++  T  L  + P +I +       ++  N  S   
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTN 437

Query: 302 PKSFKNLTSVERVLLNQNNLSGKVNVP 328
             S+   +    +       SG V  P
Sbjct: 438 EVSY-TFSQPVTIGKGTTTFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 21/240 (8%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             +S  +L  L+L+ N +  + P  +  L+ L  L LG+NQ+S + PL    L  L  L 
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLE 293

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVC--------NLANFYLNNNSLFNSIPLVL 113
            + NQL    P  I  L  +  L L  N             L   +  NN +  S    L
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV--SDVSSL 349

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
            NL +++ +    NQ S   PL+  NL+ + +L L   +++ +  +   N+     +   
Sbjct: 350 ANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
              LI   P +  +  S T   +  N  S     +         +G      SG +   +
Sbjct: 408 TGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 280 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN---LSGKVNVPKLGTFIIS 336
           +   L   +   + + +++  + ++  +L  V  +  ++     + G   +  L     S
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFS 76

Query: 337 VNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL 396
            N +++  P  + +  KL  + +++N I    P  L  L +L  L L  NQ++      L
Sbjct: 77  NNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPL 130

Query: 397 GSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
            +L  L  L+LS+N +      ++  L  L  L   N     K L  L
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANL 176

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 1e-39
 Identities = 100/470 (21%), Positives = 166/470 (35%), Gaps = 45/470 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           A+ S  HL  L L+ N +  +       LS+LQ L      L+ +    IGHL  L+ L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 62  FDVNQL-HGSIPLEIGQLSLINVLALCHNYFVC--------------NLANFYLNNNSLF 106
              N +    +P     L+ +  L L  N                     +  L+ N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM- 189

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLDKLYLYSNSFSGSI------PS 159
           N I         L  + L  N  S ++    +  L+ L+   L    F           S
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 160 IIGNLKSLLQLDLSENQL---IGSIPLSFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSL 215
            +  L +L   +     L   +  I   F  L++++  SL + ++            + L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 216 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS- 274
             +     Q   +       L SL+ L   +N   +   E    L SL  L+L  N LS 
Sbjct: 310 ELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 361

Query: 275 -GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG------KVNV 327
            G    S    T L  L++  N +   +  +F  L  +E +    +NL         +++
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 328 PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLN 386
             L    IS  +   +          L+VL ++ N+           +L +L  L L+  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 387 QLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           QL    P    SL  LQ L++++N+LKS        L  L  + L  N +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (364), Expect = 7e-38
 Identities = 92/458 (20%), Positives = 149/458 (32%), Gaps = 45/458 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           +F SFP L  L+LS   +  I      +LS+L  L L  N +  +       L+ L+ L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
                L       IG L  +  L + HN                   +P    NL +L  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ-------------SFKLPEYFSNLTNLEH 153

Query: 122 MDLSQNQFSGSIPLSLGNLSNLD----KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
           +DLS N+        L  L  +      L L  N  +  I         L +L L  N  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD 212

Query: 178 IGSIP-LSFGNLSSLTLMSLF------NNSLSGSLPPILGNLKSLSALGLHINQLSGV-- 228
             ++       L+ L +  L         +L       L  L +L+     +  L     
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 229 -IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
            I      L+++ +  L +  +         Y      LEL            + +L  L
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-------VNVPKLGTFIISVNNI 340
              +   N        S  +L S+E + L++N LS K            L    +S N +
Sbjct: 331 TFTS---NKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPV-QLGKLFSLNKLILNLNQLSGGMPLELGSL 399
             ++        +L+ LD   +N+           L +L  L ++              L
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 400 IELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQF 436
             L+ L ++ N  + +    I   L  L +LDLS  Q 
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  143 bits (363), Expect = 1e-37
 Identities = 95/457 (20%), Positives = 158/457 (34%), Gaps = 36/457 (7%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                +L+LSFN L  +      +   LQ LDL   ++  +       L+ L  L    N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
            +          LS              +L        +L +     +G+L +L  ++++
Sbjct: 87  PIQSLALGAFSGLS--------------SLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 126 QNQF-SGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL----LQLDLSENQLIGS 180
            N   S  +P    NL+NL+ L L SN       + +  L  +    L LDLS N  +  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNF 191

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGL------HINQLSGVIPSSI 233
           I         L  ++L NN  S ++    +  L  L    L      +   L     S++
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 234 GNLSSLRALYLYNNGLYSFVPEEI---RYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
             L +L         L  ++ + I     LT++S   L +  +  V   S     G   L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHL 309

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNIS--ESIPPEI 348
            +             K+L  +        N   +V++P L    +S N +S         
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDL 407
             +  L+ LDLS N ++  +      L  L  L    + L          SL  L YLD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           S    + +       L  L  L ++ N F    L ++
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (290), Expect = 6e-28
 Identities = 71/338 (21%), Positives = 118/338 (34%), Gaps = 28/338 (8%)

Query: 7   PHLVHLNLSFNILFGIIPPQ-IGNLSNLQYLDL------GSNQLSGVIPLEIGHLNQLRI 59
             L  L L  N     +    I  L+ L+   L          L       +  L  L I
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 60  LYFDVNQLHGSIP-----------LEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNS 108
             F +  L   +            +    L  + +  +    +     +  L N      
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSN--SFSGSIPSIIGNLKS 166
             L L +L  L     + N+   +      +L +L+ L L  N  SF G          S
Sbjct: 320 PTLKLKSLKRL---TFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQL 225
           L  LDLS N +I ++  +F  L  L  +   +++L       +  +L++L  L +     
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI-RYLTSLSELELCTNHLSGVIPHSIGNL 284
                     LSSL  L +  N        +I   L +L+ L+L    L  + P +  +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 285 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
           + L +LNM  N L       F  LTS++++ L+ N   
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 5e-23
 Identities = 63/283 (22%), Positives = 106/283 (37%), Gaps = 11/283 (3%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIG---NLSNLQYLDLGSNQLSGVIPLEIGH-LNQL 57
           A     +L         L   +   I     L+N+    L S  +  V           L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 58  RILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC--NLANFYLNNNSL--FNSIPLVL 113
            ++     Q        + +L+  +         V   +L    L+ N L          
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP-SIIGNLKSLLQLDL 172
               SL  +DLS N    ++  +   L  L+ L    ++       S+  +L++L+ LD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPS 231
           S      +    F  LSSL ++ +  NS   +  P I   L++L+ L L   QL  + P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           +  +LSSL+ L + +N L S        LTSL ++ L TN   
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 9e-23
 Identities = 64/314 (20%), Positives = 116/314 (36%), Gaps = 22/314 (7%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNS 200
            +   L L  N           +   L  LDLS  ++      ++ +LS L+ + L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 201 LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF-VPEEIRY 259
           +          L SL  L      L+ +    IG+L +L+ L + +N + SF +PE    
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 260 LTSLSELELCTNHLSGVIPHSIGNLTGL----LLLNMCENHLSGPIPKSFKNLTSVERVL 315
           LT+L  L+L +N +  +    +  L  +    L L++  N ++   P +FK +  + ++ 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 316 LNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL 375
           L  N  S  +NV K     ++   +   +  E  +   L+  D S+          L  L
Sbjct: 207 LRNNFDS--LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA----------LEGL 254

Query: 376 FSLNKLILNLNQLSG---GMPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDL 431
            +L      L  L      +      L  +    L +  ++     S       L  ++ 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 432 SNNQFGHKILVELE 445
              QF    L  L+
Sbjct: 315 KFGQFPTLKLKSLK 328

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 21/230 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLS--GVIPLEIGHLNQLR 58
           F       L  L  + N           +L +L++LDL  N LS  G           L+
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLN 117
            L    N +  ++      L                L +    +++L       V  +L 
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLE--------------QLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQ 176
           +L  +D+S      +       LS+L+ L +  NSF  +    I   L++L  LDLS+ Q
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
           L    P +F +LSSL ++++ +N L      I   L SL  + LH N   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 8e-16
 Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 17/185 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRI 59
            +      L +L+LSFN +   +      L  L++LD   + L  +    +   L  L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 60  LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI-PLVLGNLNS 118
           L         +       LS + VL               +  NS   +  P +   L +
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVL--------------KMAGNSFQENFLPDIFTELRN 471

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L+ +DLSQ Q     P +  +LS+L  L + SN        I   L SL ++ L  N   
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 179 GSIPL 183
            S P 
Sbjct: 532 CSCPR 536

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (366), Expect = 1e-39
 Identities = 84/345 (24%), Positives = 145/345 (42%), Gaps = 26/345 (7%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
                 L   S+ + +      L S++ + ++  + + SI   +  L+NL+ L L  N  
Sbjct: 23  EGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQI 78

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLK 213
           +   P  + NL  L  L +  N++  +   +  NL++L  + L  +++S   P  L NL 
Sbjct: 79  TDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
            + +L L  N       S + N++ L  L +  + +       I  LT L  L L  N +
Sbjct: 133 KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQI 189

Query: 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS---GKVNVPKL 330
             + P  + +LT L       N ++   P    N+T +  + +  N ++      N+ +L
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQL 245

Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
               I  N IS+     + D  KL++L++ SN I       L  L  LN L LN NQL  
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGN 301

Query: 391 GMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
                +G L  L  L LS N +    P  + +L ++   D +N  
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (365), Expect = 2e-39
 Identities = 76/353 (21%), Positives = 150/353 (42%), Gaps = 32/353 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F  +     +   L    +  ++      L ++  L +   +++ +    I +L  L  L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYL 71

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC--------NLANFYLNNNSLFNSIPLV 112
             + NQ+    PL    L  +  L +  N            NL   YLN +++ +  P  
Sbjct: 72  NLNGNQITDISPL--SNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-- 127

Query: 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           L NL  + +++L  N     +   L N++ L+ L +  +      P  I NL  L  L L
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232
           + NQ+    PL   +L+SL   + + N ++   P  + N+  L++L +  N+++ + P  
Sbjct: 185 NYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238

Query: 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNM 292
           + NLS L  L +  N +       ++ LT L  L + +N +S +    + NL+ L  L +
Sbjct: 239 LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFL 294

Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGK---VNVPKLGTFIISVNNISE 342
             N L     +    LT++  + L+QN+++      ++ K+ +   +   I +
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 5e-37
 Identities = 86/344 (25%), Positives = 144/344 (41%), Gaps = 26/344 (7%)

Query: 95  LANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154
            A        +    P    +L       L +   +  +      L ++ KL +     +
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
            SI  I   L +L  L+L+ NQ+    PLS  NL  LT + +  N ++      L NL +
Sbjct: 58  -SIQGI-EYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           L  L L+ + +S + P  + NL+ + +L L  N   S     +  +T L+ L +  + + 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNV---PKLG 331
            V P  I NLT L  L++  N +    P    +LTS+       N ++    V    +L 
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLN 224

Query: 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391
           +  I  N I++  P  + +  +L  L++ +N I       +  L  L  L +  NQ+S  
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD- 279

Query: 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
               L +L +L  L L+ N+L +   + IG L  L  L LS N 
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 28/178 (15%), Positives = 64/178 (35%), Gaps = 31/178 (17%)

Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
            + L      ++ + P    +L   +   + +  ++  +    + L S+ ++++    ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 323 GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI 382
                                    I     L+ L+L+ N I    P  L  L  L  L 
Sbjct: 58  S---------------------IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94

Query: 383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
           +  N+++      L +L  L+ L L+ + +    P  + NL ++  L+L  N     +
Sbjct: 95  IGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL 148

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (379), Expect = 2e-39
 Identities = 103/454 (22%), Positives = 167/454 (36%), Gaps = 26/454 (5%)

Query: 2   AFSSFPHLVHLNLSFNIL--FGIIPPQIGNLSNLQYLDLGSNQLSGV-IPLEIGHLNQLR 58
           AF    HL  L L F  L    +      NL  L  LDL  NQ+  + +    G LN L+
Sbjct: 92  AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 59  ILYFDVNQLHGSIPLEIGQLSLIN--VLALCHNYFVCNLANFYLNNNSLFNSIPL----V 112
            + F  NQ+      E+  L        +L  N     ++  +    + F ++ L    V
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLK--SLLQL 170
            GN  ++       N  S S   SL    ++       ++      +    L   S+  L
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
           DLS   +       F  L  L +++L  N ++         L +L  L L  N L  +  
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
           S+   L  +  + L  N +     +  ++L  L  L+L  N L+     +I  +  +  +
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDI 386

Query: 291 NMCENHLSGPIPKSF--KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
            +  N L      +     +   E  L N + L   + VP L   I++ N  S     + 
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 349 -GDSPKLQVLDLSSNNIVGEIPVQL-----GKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
             ++P L+ L L  N +      +L       L  L  L LN N L+   P     L  L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           + L L++N+L       +   L    LD+S NQ 
Sbjct: 507 RGLSLNSNRLTVLSHNDLPANLE--ILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (376), Expect = 7e-39
 Identities = 101/463 (21%), Positives = 174/463 (37%), Gaps = 38/463 (8%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVI--PLEIGHLNQLRI 59
           AF + P+L  L+L  + ++ + P     L +L  L L    LS  +       +L  L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 60  LYFDVNQLHG-SIPLEIGQLSLINVLALCHNYF------------VCNLANFYLNNNSLF 106
           L    NQ+    +    G+L+ +  +    N                 L+ F L  NSL+
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 107 NSIPLVLGN-LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLK 165
           + + +  G  +N    M L     S       GN   +D    +SN+ S S    +    
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVS-------GNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 166 SLLQLDLSENQLIGSIPLSFGNL--SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHIN 223
            ++      + +      +F  L  SS+  + L +  +      +   LK L  L L  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 224 QLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGN 283
           +++ +   +   L +L+ L L  N L          L  ++ ++L  NH++ +   +   
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 284 LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISES 343
           L  L  L++ +N L+     +   + S+  + L+ N L     +      I    N  E+
Sbjct: 361 LEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415

Query: 344 IPPE--IGDSPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLEL---- 396
           +     +   P LQ+L L+ N        Q   +  SL +L L  N L      EL    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 397 -GSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
              L  LQ L L+ N L S  P    +L  L  L L++N+   
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (375), Expect = 8e-39
 Identities = 104/475 (21%), Positives = 176/475 (37%), Gaps = 56/475 (11%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRILY 61
                    L LSFN +  +       L  LQ L+LGS      I  E   +L  LRIL 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI--PLVLGNLNSL 119
              +           ++  ++  A    +   +L    L    L +++       NL +L
Sbjct: 80  LGSS-----------KIYFLHPDAFQGLF---HLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 120 STMDLSQNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNL--KSLLQLDLSENQ 176
           + +DLS+NQ     +  S G L++L  +   SN         +  L  K+L    L+ N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 177 LIGSIPLSF------------------GNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL 218
           L   + + +                  GN  ++ +   F+N++S S    L     +   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 219 GLHINQLSGVIPSSIGNL--SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV 276
           G   + +     ++   L  SS+R L L +  ++S        L  L  L L  N ++ +
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-----VNVPKLG 331
              +   L  L +LN+  N L      +F  L  V  + L +N+++         + KL 
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391
           T  +  N ++      I   P +  + LS N +V  +P       + N + L+ N+L   
Sbjct: 366 TLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENL 416

Query: 392 MPLE-LGSLIELQYLDLSTNKLKS-SIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
             L  L  +  LQ L L+ N+  S S  ++      L  L L  N        EL
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  126 bits (318), Expect = 2e-31
 Identities = 79/377 (20%), Positives = 132/377 (35%), Gaps = 33/377 (8%)

Query: 93  CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
           C+           F ++  V   LN+   + LS N        S   L  L  L L S  
Sbjct: 2   CSFDGRIAFYR--FCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 153 FSGSI-PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP--IL 209
              +I      NL +L  LDL  +++    P +F  L  L  + L+   LS ++      
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 210 GNLKSLSALGLHINQLSGV-IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLT--SLSEL 266
            NLK+L+ L L  NQ+  + +  S G L+SL+++   +N ++     E+  L   +LS  
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 267 ELCTNHLSGVIPHSI------------------GNLTGLLLLNMCENHLSGPIPKSFKNL 308
            L  N L   +                      GN   + +     N +S     S    
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 309 TSVERVLLNQNNLS-------GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS 361
             +       +N+          +    +    +S   +             L+VL+L+ 
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 362 NNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIG 421
           N I          L +L  L L+ N L          L ++ Y+DL  N +     ++  
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 422 NLLRLCYLDLSNNQFGH 438
            L +L  LDL +N    
Sbjct: 360 FLEKLQTLDLRDNALTT 376

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (282), Expect = 8e-27
 Identities = 80/445 (17%), Positives = 158/445 (35%), Gaps = 62/445 (13%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSN------LQYLDLGSNQLSGVIP-LEIGH 53
                   L   +L+ N L+  +    G   N      L+ LD+  N  +  I       
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 54  LNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVL 113
           +++ +     +             +   +           ++ +  L++  +F+    V 
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF-AGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
             L  L  ++L+ N+ +     +   L NL  L L  N       S    L  +  +DL 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
           +N +      +F  L  L  + L +N+L                             ++I
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNAL-----------------------------TTI 377

Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV-IPHSIGNLTGLLLLNM 292
             + S+  ++L  N L +     +    + + + L  N L  + I + +  +  L +L +
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 293 CENHLSG-PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS 351
            +N  S     ++     S+E++ L +N               + +   +E         
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENM--------------LQLAWETELCWDVFEGL 479

Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411
             LQVL L+ N +    P     L +L  L LN N+L+     +L +   L+ LD+S N+
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQ 537

Query: 412 LKSSIPKSIGNLLRLCYLDLSNNQF 436
           L +  P      + L  LD+++N+F
Sbjct: 538 LLAPNPDV---FVSLSVLDITHNKF 559

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (351), Expect = 1e-37
 Identities = 58/277 (20%), Positives = 96/277 (34%), Gaps = 36/277 (12%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
           ++ P  V L L    L    P Q   LS+LQ++ + +  L   +P  +     L  L   
Sbjct: 78  ATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMD 123
            N L  ++P  I  L+               L    +        +P  L +        
Sbjct: 136 RNPLR-ALPASIASLN--------------RLRELSIRACPELTELPEPLAST------- 173

Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
                           L NL  L L       S+P+ I NL++L  L +  + L  ++  
Sbjct: 174 --------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP 223

Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL-HINQLSGVIPSSIGNLSSLRAL 242
           +  +L  L  + L   +   + PPI G    L  L L   + L   +P  I  L+ L  L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKL 282

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPH 279
            L      S +P  I  L +   + +  +  + +  H
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (350), Expect = 2e-37
 Identities = 64/321 (19%), Positives = 120/321 (37%), Gaps = 26/321 (8%)

Query: 131 GSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSS 190
           GS      + S  + LY   ++       ++   +     D +             N ++
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57

Query: 191 LTLMSLFNNSLSGSLPPILGNLKS--LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248
             + +    +L  +   +L +       AL L    L    P     LS L+ + +   G
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN- 307
           L   +P+ ++    L  L L  N L   +P SI +L  L  L++        +P+   + 
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 308 --------LTSVERVLLNQNNL----SGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355
                   L +++ + L    +    +   N+  L +  I  + +  ++ P I   PKL+
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLE 232

Query: 356 VLDLSSNNIVGEIPVQLGKLFSLNKLIL-NLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
            LDL     +   P   G    L +LIL + + L   +PL++  L +L+ LDL      S
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 415 SIPKSIGNLLRLCYLDLSNNQ 435
            +P  I  L   C + +  + 
Sbjct: 292 RLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (347), Expect = 4e-37
 Identities = 61/335 (18%), Positives = 107/335 (31%), Gaps = 40/335 (11%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
              N Y   ++       VL         D ++            N +N         + 
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRAL 68

Query: 154 SGSIPSIIGNLKS--LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGN 211
             +   ++ +      + L+L    L    P     LS L  M++    L   LP  +  
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 212 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI---------RYLTS 262
              L  L L  N L   +P+SI +L+ LR L +      + +PE +         + L +
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
           L  L L    +   +P SI NL  L  L +  + LS  +  +  +L              
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK------------ 230

Query: 323 GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI 382
                  L    +       + PP  G    L+ L L   + +  +P+ + +L  L KL 
Sbjct: 231 -------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP 417
           L        +P  +  L     + +  +       
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (343), Expect = 2e-36
 Identities = 55/357 (15%), Positives = 111/357 (31%), Gaps = 46/357 (12%)

Query: 50  EIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLAN-----FYLNNNS 104
              H +    LYF  +         + Q            +     AN            
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 105 LFNSIPLVLGNLNS--LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIG 162
              +   +L +        ++L         P     LS+L  + + +      +P  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222
               L  L L+ N L  ++P S  +L+ L  +S+        LP  L +  +        
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA-------- 175

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
                        L +L++L L   G+   +P  I  L +L  L++  + LS  +  +I 
Sbjct: 176 -------SGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE 342
           +L  L  L++         P  F                        L   I+   +   
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAP-------------------LKRLILKDCSNLL 267

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399
           ++P +I    +L+ LDL     +  +P  + +L +   +++  +  +        + 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (342), Expect = 2e-36
 Identities = 58/285 (20%), Positives = 105/285 (36%), Gaps = 29/285 (10%)

Query: 24  PPQIGNLSNLQYLDLGSNQLSGVIP-LEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
             +  N +N Q        L      LE         L      L    P +  +LS   
Sbjct: 49  AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS--- 104

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN 142
                      +L +  ++   L   +P  +     L T+ L++N    ++P S+ +L+ 
Sbjct: 105 -----------HLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151

Query: 143 LDKLYLYSNSFSGSIPSIIGN---------LKSLLQLDLSENQLIGSIPLSFGNLSSLTL 193
           L +L + +      +P  + +         L +L  L L    +  S+P S  NL +L  
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 194 MSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV 253
           + + N+ LS +L P + +L  L  L L         P   G  + L+ L L +      +
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298
           P +I  LT L +L+L        +P  I  L    ++ +  +  +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 1e-23
 Identities = 44/272 (16%), Positives = 86/272 (31%), Gaps = 24/272 (8%)

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
           +GS      + S    +    ++       +L   +       +             N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 238 SLRALYLYNNGLYSFVPEEIRYLTS--LSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
           + +        L +   + +   T      LEL +  L    P     L+ L  + +   
Sbjct: 57  NPQIETRTGRALKAT-ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNL----SGKVNVPKLGTFIISVNNISESIPPEIGDS 351
            L   +P + +    +E + L +N L    +   ++ +L    I        +P  +  +
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 352 P---------KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
                      LQ L L    I   +P  +  L +L  L +  + LS  +   +  L +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
           + LDL       + P   G    L  L L + 
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 22/198 (11%)

Query: 254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVER 313
                + +    L    +         +         +    H          N  + + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQI 60

Query: 314 VLLNQNNLS------GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
                  L            P      +    +    P +      LQ + + +  ++ E
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN----- 422
           +P  + +   L  L L  N L   +P  + SL  L+ L +      + +P+ + +     
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 423 ----LLRLCYLDLSNNQF 436
               L+ L  L L     
Sbjct: 178 EHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDL-GSNQLSGVIPLEIGHLNQLRIL 60
           A    P L  L+L         PP  G  + L+ L L   + L   +PL+I  L QL  L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKL 282

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHN 89
                     +P  I QL    ++ +  +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (344), Expect = 3e-35
 Identities = 80/474 (16%), Positives = 163/474 (34%), Gaps = 48/474 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
              +  +L  L L  + +  I      +L +L++LDL  N LS +     G L+ L+ L 
Sbjct: 45  DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 62  FDVNQLHG-SIPLEIGQLSLINVLALCHNYFVC-----------NLANFYLNNNSLFNSI 109
              N      +      L+ +  L + +                +L    +   SL N  
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ 169
              L ++  +  + L  ++ +  + +    LS++  L L   + +    S +   +    
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILG------------------N 211
           +     +       SF  L  L    L  + +      + G                   
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 212 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271
             ++  L +    L   + +    L  ++ + + N+ ++       ++L SL  L+L  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 272 HLSGVIPHS---IGNLTGLLLLNMCENHLS--GPIPKSFKNLTSVERVLLNQNNLS---- 322
            +      +    G    L  L + +NHL       +    L ++  + +++N       
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 323 GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI 382
                 K+    +S   I   +   I  +  L+VLD+S+NN+     +    L  L +L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNL-DSFSLF---LPRLQELY 457

Query: 383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           ++ N+L      +      L  + +S N+LKS        L  L  + L  N +
Sbjct: 458 ISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (330), Expect = 2e-33
 Identities = 79/453 (17%), Positives = 152/453 (33%), Gaps = 36/453 (7%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
              +  L+LSFN +  I    +   +NLQ L L S++++ +       L  L  L    N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVC-----------NLANFYLNNNSLFNSIP-LVL 113
            L        G LS +  L L  N +             NL    + N   F+ I  +  
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
             L SL+ +++           SL ++ ++  L L+ +  +  +      L S+  L+L 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
           +  L              + M       S         L  L    L ++++        
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EF 258

Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
            + +         +              ++  L +   +L   +      L  +  + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV--------NVPKLGTFIISVNNIS--ES 343
            + +        ++L S+E + L++N +  +           P L T ++S N++   + 
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQ 403
               +     L  LD+S N     +P        +  L L+   +     ++      L+
Sbjct: 379 TGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLE 434

Query: 404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            LD+S N L  S       L RL  L +S N+ 
Sbjct: 435 VLDVSNNNL-DSFSL---FLPRLQELYISRNKL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (319), Expect = 6e-32
 Identities = 82/421 (19%), Positives = 149/421 (35%), Gaps = 48/421 (11%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           IP  +   + ++ LDL  N+++ +   ++     L++L                      
Sbjct: 20  IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVL---------------------- 55

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN 142
                            L ++ +         +L SL  +DLS N  S       G LS+
Sbjct: 56  ----------------ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 143 LDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLSENQLIGSIP-LSFGNLSSLTLMSLFNNS 200
           L  L L  N +    + S+  NL +L  L +   +    I  + F  L+SL  + +   S
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 201 LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
           L       L +++ +  L LH+++ + ++      LSS+R L L +  L  F    +   
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320
              S ++      S +   S   L  LL   +  + +      +   L        +  +
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF-DDCTLNGLGDFNPSESDVVS 278

Query: 321 LSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNK 380
             GKV    +    I    +   +        K++ + + ++ +          L SL  
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 381 LILNLNQLS---GGMPLELGSLIELQYLDLSTNKLKS--SIPKSIGNLLRLCYLDLSNNQ 435
           L L+ N +           G+   LQ L LS N L+S     + +  L  L  LD+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 436 F 436
           F
Sbjct: 399 F 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (311), Expect = 8e-31
 Identities = 66/344 (19%), Positives = 131/344 (38%), Gaps = 6/344 (1%)

Query: 100 LNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS 159
             + S   SIP  L    ++ ++DLS N+ +      L   +NL  L L S+  +     
Sbjct: 12  GRSRSF-TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 160 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPILGNLKSLSAL 218
              +L SL  LDLS+N L       FG LSSL  ++L  N      +  +  NL +L  L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 219 GL-HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
            + ++   S +       L+SL  L +    L ++  + ++ +  +  L L  +  + ++
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISV 337
                 L+ +  L + + +L+     S   +  V   +         +        +  +
Sbjct: 189 EIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG 397
             I E    E  D     + D + +       +   +  ++ +L +    L   +     
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 398 SLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441
            L +++ + +  +K+         +L  L +LDLS N    + L
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (291), Expect = 3e-28
 Identities = 52/376 (13%), Positives = 120/376 (31%), Gaps = 20/376 (5%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F+    L  L +    L       + ++ ++ +L L  ++ + ++ +    L+ +R L 
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP----LVLGNLN 117
                L       +    + + +              +     L   I     +   +  
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
                D + ++      L       + +L++        + ++   L+ + ++ +  +++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPP---ILGNLKSLSALGLHINQLS--GVIPSS 232
                    +L SL  + L  N +           G   SL  L L  N L         
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNM 292
           +  L +L +L +  N  +   P+  ++   +  L L +  +  V          L +L++
Sbjct: 383 LLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVV---KTCIPQTLEVLDV 438

Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLS---GKVNVPKLGTFIISVNNISESIPPEIG 349
             N+L          L  ++ + +++N L         P L    IS N +         
Sbjct: 439 SNNNLD----SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFD 494

Query: 350 DSPKLQVLDLSSNNIV 365
               LQ + L +N   
Sbjct: 495 RLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 23/249 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
                   +  L++    LF  +      L  ++ + + ++++  V      HL  L  L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSL--FNSIPLVLGNLNS 118
               N +       +   +              +L    L+ N L        +L  L +
Sbjct: 340 DLSENLMVE---EYLKNSACKGAWP--------SLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L+++D+S+N F   +P S      +  L L S      + +     ++L  LD+S N L 
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNL- 443

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
            S  L    L  L  + +  N L  +LP        L  + +  NQL  V       L+S
Sbjct: 444 DSFSL---FLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 239 LRALYLYNN 247
           L+ ++L+ N
Sbjct: 499 LQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 49/275 (17%), Positives = 89/275 (32%), Gaps = 23/275 (8%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
             F         + + +    +          ++ L +    L   +      L +++ +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
             + +++          L  +  L L  N  V             +       G   SL 
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-----------EEYLKNSACKGAWPSLQ 364

Query: 121 TMDLSQNQFS--GSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           T+ LSQN           L  L NL  L +  N+F   +P      + +  L+LS   + 
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
               +      +L ++ + NN+L  S    L  L+ L    +  N+L  +          
Sbjct: 424 V---VKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQELY---ISRNKLKTL--PDASLFPV 474

Query: 239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
           L  + +  N L S        LTSL ++ L TN  
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 14/167 (8%)

Query: 2   AFSSFPHLVHLNLSFNIL--FGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI 59
              ++P L  L LS N L         +  L NL  LD+  N     +P       ++R 
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 60  LYFDVNQLHGSIPLEIGQLSLINVLALCHNY------FVCNLANFYLNNNSLFNSIPLVL 113
           L      +   +   I     + VL + +N       F+  L   Y++ N L  ++P   
Sbjct: 415 LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL-KTLP-DA 469

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSI 160
                L  M +S+NQ           L++L K++L++N +  S P I
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (335), Expect = 2e-34
 Identities = 69/327 (21%), Positives = 140/327 (42%), Gaps = 12/327 (3%)

Query: 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ 176
                +   + +F  ++P  +   +    L L  N           +   L +L+L+EN 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGN 235
           +    P +F NL +L  + L +N L   +P  +   L +L+ L +  N++  ++     +
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
           L +L++L + +N L          L SL +L L   +L+ +   ++ +L GL++L +   
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNL-----SGKVNVPKLGTFIISVNNISESIPPE-IG 349
           +++     SFK L  ++ + ++            +    L +  I+  N++ ++P   + 
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245

Query: 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409
               L+ L+LS N I       L +L  L ++ L   QL+   P     L  L+ L++S 
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 410 NKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           N+L +       ++  L  L L +N  
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (333), Expect = 4e-34
 Identities = 68/318 (21%), Positives = 135/318 (42%), Gaps = 16/318 (5%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                 L+L  N +  +   +  +  +L+ L+L  N +S V P    +L  LR L    N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 66  QLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDL 124
           +L   IPL +   LS              NL    ++ N +   +  +  +L +L ++++
Sbjct: 91  RLK-LIPLGVFTGLS--------------NLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 125 SQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS 184
             N        +   L++L++L L   + +      + +L  L+ L L    +      S
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL 244
           F  L  L ++ + +     ++ P      +L++L +    L+ V   ++ +L  LR L L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 245 YNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS 304
             N + +     +  L  L E++L    L+ V P++   L  L +LN+  N L+      
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 305 FKNLTSVERVLLNQNNLS 322
           F ++ ++E ++L+ N L+
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.7 bits (241), Expect = 8e-22
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 20/228 (8%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F    +L  L +  N L  I       L++L+ L L    L+ +    + HL+ L +L 
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVC--NLANFYLNNNSLFNSIPLVLGNLNSL 119
                ++                A+    F     L    +++    +++        +L
Sbjct: 183 LRHLNIN----------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
           +++ ++    +    L++ +L  L  L L  N  S    S++  L  L ++ L   QL  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLS 226
             P +F  L+ L ++++  N L+ +L   +  ++ +L  L L  N L+
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (330), Expect = 1e-33
 Identities = 59/443 (13%), Positives = 138/443 (31%), Gaps = 32/443 (7%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
             +        ++ + L   +     +  N++ LDL  N LS +   ++    +L +L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVC-----NLANFYLNNNSLFNSIPLVLGNLN 117
             N L+ ++   +  LS +  L L +NY        ++   +  NN++ + +        
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI-SRVS--CSRGQ 120

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLSENQ 176
               + L+ N+ +    L  G  S +  L L  N     +   +  +  +L  L+L  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL 236
           +           + L  + L +N L+  + P   +   ++ + L  N+L  +I  ++   
Sbjct: 181 IYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH 296
            +L    L  NG +     +     +     +    +  +   +    T   L +     
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 297 LSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV 356
                      L +++R      +                  + +E +  E  +  + + 
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQ---------------GSETERLECERENQARQRE 340

Query: 357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI 416
           +D         I     +  +   L      L   +     +  EL          +  +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIEL 399

Query: 417 PKSIGNLLRLCYLDLSNNQFGHK 439
             +      L  L     ++   
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEM 422

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 2e-27
 Identities = 58/398 (14%), Positives = 120/398 (30%), Gaps = 37/398 (9%)

Query: 47  IPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF 106
           I     + N+ +I     + L  ++                      N+    L+ N L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW--------------NVKELDLSGNPLS 47

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS 166
                 L     L  ++LS N    ++   L +LS L  L L +N         +    S
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPS 100

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
           +  L  + N +     +S         + L NN ++       G    +  L L +N++ 
Sbjct: 101 IETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 227 GV-IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
            V       +  +L  L L  N +Y    +       L  L+L +N L+  +     +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF----IISVNNIS 341
           G+  +++  N L   I K+ +   ++E   L  N                   ++   + 
Sbjct: 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 342 ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG----GMPLELG 397
           +       +     +    +            +L +L +    L    G     +  E  
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 398 SLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
           +    + +D    + ++ I +          L+     
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (282), Expect = 3e-27
 Identities = 54/343 (15%), Positives = 103/343 (30%), Gaps = 19/343 (5%)

Query: 108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
           +I  +  N N      ++ +    ++     +  N+ +L L  N  S    + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSG 227
             L+LS N L     L   +LS+L  + L NN +       L    S+  L    N +S 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR 113

Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV-IPHSIGNLTG 286
           V   S       + +YL NN +      +    + +  L+L  N +  V       +   
Sbjct: 114 V---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS----GKVNVPKLGTFIISVNNISE 342
           L  LN+  N +   +         ++ + L+ N L+       +   +    +  N +  
Sbjct: 171 LEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
            I   +  S  L+  DL  N              +     +    +              
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE 445
                     +         L+ L   + +           LE
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 4e-26
 Identities = 60/388 (15%), Positives = 108/388 (27%), Gaps = 45/388 (11%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             + F  L  LNLS N+L+      + +LS L+ LDL +N +      E+     +  L+
Sbjct: 53  DLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLH 105

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
              N +   +    GQ                   N YL NN +     L  G  + +  
Sbjct: 106 AANNNIS-RVSCSRGQ----------------GKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 122 MDLSQNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
           +DL  N+    +      +   L+ L L  N     +   +     L  LDLS N+ +  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK-LAF 205

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR 240
           +   F + + +T +SL NN L   +   L   ++L    L  N              + R
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQR 263

Query: 241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP 300
              +    +     +     T  +           +       L  L           G 
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 301 IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLS 360
             +  +                   N  +              I            L+  
Sbjct: 324 ETERLECER---------------ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 361 SNNIVGEIPVQLGKLFSLNKLILNLNQL 388
              +  ++         L+  +      
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.9 bits (210), Expect = 7e-18
 Identities = 44/326 (13%), Positives = 79/326 (24%), Gaps = 24/326 (7%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQ-IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
                  + +L+L  N +  +   +   +   L++L+L  N +  V         +L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTL 196

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
               N+L   +  E    +               +    L NN L   I   L    +L 
Sbjct: 197 DLSSNKLA-FMGPEFQSAA--------------GVTWISLRNNKL-VLIEKALRFSQNLE 240

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
             DL  N F     L      N     +   +                            
Sbjct: 241 HFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGS----LPPILGNLKSLSALGLHINQLSGVIPSSIGNL 236
                  L +L        S  GS    L     N      +     Q   VI       
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH 296
            +   L      L   V    R    L            +   +       LL  + + +
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

Query: 297 LSGPIPKSFKNLTSVERVLLNQNNLS 322
               + +      ++    + Q+  +
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 27/278 (9%), Positives = 67/278 (24%), Gaps = 16/278 (5%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F S   +  ++L  N L  +I   +    NL++ DL  N       L        R+  
Sbjct: 209 EFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQT 266

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNY-------FVCNLANFYLNNNSL-------FN 107
                +         + ++  +              F   L       ++L         
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
            +     N      +D  + Q+   I            L     +    + +       L
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSG 227
                     I     +        L ++        +        ++    ++ ++ + 
Sbjct: 387 DGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSE 265
           +   +           L      + + E +    +L+ 
Sbjct: 447 LAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (325), Expect = 2e-33
 Identities = 66/337 (19%), Positives = 133/337 (39%), Gaps = 14/337 (4%)

Query: 102 NNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSII 161
               +  I   L        + +               L+N   +   +++      +++
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 162 GNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221
            + + +  L+L++ Q+      +F    ++  + +  N++    P +  N+  L+ L L 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI 281
            N LS +      N   L  L + NN L     +  +  TSL  L+L +N L+ V    +
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DL 182

Query: 282 GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS--GKVNVPKLGTFIISVNN 339
             +  L   N+  N LS     +     +VE +  + N+++        +L    +  NN
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 237

Query: 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399
           +++     + + P L  +DLS N +   +     K+  L +L ++ N+L   + L    +
Sbjct: 238 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
             L+ LDLS N L   + ++     RL  L L +N  
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (289), Expect = 2e-28
 Identities = 72/433 (16%), Positives = 145/433 (33%), Gaps = 76/433 (17%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
                    +++           +   L+N + +   ++ +  +    +    Q+ +L  
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
           +  Q+   I                                             +++  +
Sbjct: 77  NDLQIE-EID-------------------------------------TYAFAYAHTIQKL 98

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
            +  N      P    N+  L  L L  N  S     I  N   L  L +S N L     
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
            +F   +SL  + L +N L+  +      + SL    +  N L     S++    ++  L
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEEL 210

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
              +N + + V   +     L+ L+L  N+L+      + N  GL+ +++  N L   + 
Sbjct: 211 DASHNSI-NVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265

Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
             F  +  +ER+ ++ N L                     ++       P L+VLDLS N
Sbjct: 266 HPFVKMQRLERLYISNNRLV--------------------ALNLYGQPIPTLKVLDLSHN 305

Query: 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI-G 421
           +++  +     +   L  L L+ N +     L+L +   L+ L LS N    +  +++  
Sbjct: 306 HLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFR 361

Query: 422 NLLRLCYLDLSNN 434
           N+ R    D   +
Sbjct: 362 NVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 2e-26
 Identities = 60/333 (18%), Positives = 124/333 (37%), Gaps = 30/333 (9%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F   +  +   +    + +  +    + +   ++ L+L   Q+  +      + + ++ L
Sbjct: 39  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 98

Query: 61  YFDVNQLHGSIPLEIGQ-LSLINVLALCHNYFV----------CNLANFYLNNNSLFNSI 109
           Y   N +   +P  + Q + L+ VL L  N               L    ++NN+L    
Sbjct: 99  YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ 169
                   SL  + LS N+ +    + L  + +L    +  N       S +    ++ +
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEE 209

Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229
           LD S N +     +       LT++ L +N+L+      L N   L  + L  N+L  ++
Sbjct: 210 LDASHNSINV---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 264

Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289
                 +  L  LY+ NN L + +    + + +L  L+L  NHL   +  +      L  
Sbjct: 265 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
           L +  N +      +   L ++    L+ N+  
Sbjct: 323 LYLDHNSIVTLKLSTHHTLKNLT---LSHNDWD 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  127 bits (320), Expect = 8e-32
 Identities = 77/360 (21%), Positives = 130/360 (36%), Gaps = 55/360 (15%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
               H+  L +  N L   +P        L+ L++  NQL+  +P+    L +L I    
Sbjct: 58  CLPAHITTLVIPDNNL-TSLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNP 112

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMD 123
           +  L                           L   ++  N L  S+P++   L  L    
Sbjct: 113 LTHLPALPS---------------------GLCKLWIFGNQL-TSLPVLPPGLQEL---S 147

Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
           +S NQ + S+P     L     L+ Y+N  + S+P +   L+    L +S+NQL  S+P 
Sbjct: 148 VSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPT 198

Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
               L  L     +NN L+ SLP +   LK L   G  +  L    P        L+ L 
Sbjct: 199 LPSELYKLW---AYNNRLT-SLPALPSGLKELIVSGNRLTSL----PVLPSE---LKELM 247

Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 303
           +  N L S +P      + L  L +  N L+  +P S+ +L+    +N+  N LS    +
Sbjct: 248 VSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302

Query: 304 SFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
           + + +TS                     T  + +      +P   G+        +    
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (313), Expect = 7e-31
 Identities = 76/374 (20%), Positives = 131/374 (35%), Gaps = 77/374 (20%)

Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
            +    L++G + L+  +P  +     +  L    N L  S+P    +L           
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---------- 84

Query: 90  YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                     ++ N L  S+P++   L  LS                    S L KL+++
Sbjct: 85  -------TLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIF 129

Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL 209
            N  + S+P +   L+ L    +S+NQL  S+P     L  L     +NN L+ SLP + 
Sbjct: 130 GNQLT-SLPVLPPGLQEL---SVSDNQL-ASLPALPSELCKLWA---YNNQLT-SLPMLP 180

Query: 210 GNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC 269
             L+ LS   +  NQL+  +P+    L  L   + YNN L S  P      + L EL + 
Sbjct: 181 SGLQELS---VSDNQLA-SLPTLPSELYKL---WAYNNRLTSL-PALP---SGLKELIVS 229

Query: 270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPK 329
            N L+  +P     L  L++     N L+  +P     L S+    + +N L+       
Sbjct: 230 GNRLTS-LPVLPSELKELMVSG---NRLTS-LPMLPSGLLSLS---VYRNQLT------- 274

Query: 330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389
                         +P  +        ++L  N +       L ++ S       + +  
Sbjct: 275 -------------RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 390 GGMPLELGSLIELQ 403
                       L 
Sbjct: 322 MAGASAPRETRALH 335

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (313), Expect = 7e-31
 Identities = 66/321 (20%), Positives = 129/321 (40%), Gaps = 63/321 (19%)

Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
            N  + +++ ++  + ++P  L    ++  L +  N+ + S+P++   L++L   ++S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91

Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
           QL  S+P+    L  L++ S     L    P +   L  L    +  NQL+  +P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLT-SLPVLPPG 142

Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
           L  L    + +N L S         + L +L    N L+  +P     L     L++ +N
Sbjct: 143 LQEL---SVSDNQLASLPAL----PSELCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDN 191

Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355
            L+  +P     L  +       N L+                    S+P        L+
Sbjct: 192 QLAS-LPTLPSELYKLW---AYNNRLT--------------------SLPALPS---GLK 224

Query: 356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSS 415
            L +S N +   +PV   +L  L    ++ N+L+  +P+    L     L +  N+L + 
Sbjct: 225 ELIVSGNRL-TSLPVLPSELKELM---VSGNRLTS-LPMLPSGL---LSLSVYRNQL-TR 275

Query: 416 IPKSIGNLLRLCYLDLSNNQF 436
           +P+S+ +L     ++L  N  
Sbjct: 276 LPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 9e-30
 Identities = 71/348 (20%), Positives = 123/348 (35%), Gaps = 63/348 (18%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
             A   +  + L  ++P  L     ++T+ +  N  + S+P     L  L+   +  N  
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTLE---VSGNQL 93

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLK 213
           + S+P +   L  L         L           S L  + +F N L+ SLP +   L+
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPGLQ 144

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
            LS     +  L    P+    L  L   + YNN L + +P      + L EL +  N L
Sbjct: 145 ELSVSDNQLASL----PALPSELCKL---WAYNNQL-TSLPMLP---SGLQELSVSDNQL 193

Query: 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333
           +  +P     L  L   N   N L+  +P     L  +    ++ N L            
Sbjct: 194 A-SLPTLPSELYKLWAYN---NRLT-SLPALPSGLKELI---VSGNRL------------ 233

Query: 334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP 393
                    S+P       +L+ L +S N +   +P+    L SL+   +  NQL+  +P
Sbjct: 234 --------TSLPVLPS---ELKELMVSGNRLT-SLPMLPSGLLSLS---VYRNQLTR-LP 277

Query: 394 LELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441
             L  L     ++L  N L     +++  +           +F     
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 3e-19
 Identities = 54/256 (21%), Positives = 94/256 (36%), Gaps = 28/256 (10%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
              P L  L++S N L   +P     L     L   +NQL+  +P+    L +L +    
Sbjct: 138 VLPPGLQELSVSDNQL-ASLPALPSEL---CKLWAYNNQLT-SLPMLPSGLQELSVSD-- 190

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYF---VCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
            NQL  S+P    +L  +                L    ++ N L  S+P++   L  L 
Sbjct: 191 -NQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPVLPSELKEL- 246

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
              +S N+ + S+P+    L +L    +Y N  +  +P  + +L S   ++L  N L   
Sbjct: 247 --MVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 181 IPLSFGNLSSLTLMS---LFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP----SSI 233
              +   ++S    S   +  +    S P     L   +A  L   +     P       
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

Query: 234 GNLSSLRALYLYNNGL 249
           G   +  A  L+ + L
Sbjct: 360 GQEDNADAFSLFLDRL 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 1e-31
 Identities = 91/419 (21%), Positives = 159/419 (37%), Gaps = 54/419 (12%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           I P+  + + LQ     S+ L+  +P+E  ++      Y   ++   + P   G+   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN 142
           V  L             LNN  L +S+P +  +L SL     S N  +  +P    +L +
Sbjct: 62  VSRLRDCLDR-QAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-ELPELPQSLKS 115

Query: 143 LDKLYLYSNSFSGSIPSI---------------IGNLKSLLQLDLSENQLIGSIPLSFGN 187
           L        + S   P +               + N   L  +D+  N L   +P    +
Sbjct: 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L  +      NN L   LP +  NL  L+A+    N L  +         SL ++   NN
Sbjct: 175 LEFIA---AGNNQLE-ELPEL-QNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNN 225

Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
            L      E++ L  L+ +    N L   +P    +L  L + +     L    P+  ++
Sbjct: 226 ILEE--LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL----PELPQS 278

Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
           LT ++      + LS     P L     S N I  S+       P L+ L++S+N ++ E
Sbjct: 279 LTFLDVSENIFSGLSE--LPPNLYYLNASSNEIR-SLCDLP---PSLEELNVSNNKLI-E 331

Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRL 426
           +P    +   L +LI + N L+  +P    +   L+ L +  N L    P    ++  L
Sbjct: 332 LPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPL-REFPDIPESVEDL 382

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 2e-27
 Identities = 90/451 (19%), Positives = 150/451 (33%), Gaps = 69/451 (15%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLS-------------NLQYLDLGSNQLSGVIPL 49
             +         +++      PP  G                    L+L +  LS  +P 
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE 88

Query: 50  EIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC---NLANFYLNNNSLF 106
              HL  L       N L   +P     L  + V              L    ++NN L 
Sbjct: 89  LPPHLESLVASC---NSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL- 143

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS 166
             +P  L N + L  +D+  N     +P    +L  +      +N     +P  + NL  
Sbjct: 144 EKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQLE-ELPE-LQNLPF 196

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
           L  +    N L   +P    +L S+      NN L     P L NL  L+ +    N L 
Sbjct: 197 LTAIYADNNSLK-KLPDLPLSLESIV---AGNNIL--EELPELQNLPFLTTIYADNNLLK 250

Query: 227 GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG 286
             +P    +L +L     Y   L    PE  + LT L   E   + LS + P+       
Sbjct: 251 -TLPDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLSELPPN------- 298

Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG-KVNVPKLGTFIISVNNISESIP 345
           L  LN   N +   +     +L  +    ++ N L       P+L   I S N+++  +P
Sbjct: 299 LYYLNASSNEIRS-LCDLPPSLEELN---VSNNKLIELPALPPRLERLIASFNHLA-EVP 353

Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYL 405
                   L+ L +  N +  E P     +       L +N     +P    +   L+ L
Sbjct: 354 ELPQ---NLKQLHVEYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQN---LKQL 401

Query: 406 DLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            + TN L    P    +   +  L +++ + 
Sbjct: 402 HVETNPL-REFPDIPES---VEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (256), Expect = 9e-24
 Identities = 71/344 (20%), Positives = 127/344 (36%), Gaps = 47/344 (13%)

Query: 93  CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
             L     ++++L   +P+   N+ S +    + +++  + P   G    +    L    
Sbjct: 11  TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
                       +   +L+L+   L  S+P    +L SL       NSL+  LP +  +L
Sbjct: 70  -----------DRQAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-ELPELPQSL 113

Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272
           KSL     ++  LS + P        L  L + NN L      E++  + L  +++  N 
Sbjct: 114 KSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNS 164

Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG-KVNVPKLG 331
           L   +P    +L  +   N   N L        +NL  +  +  + N+L         L 
Sbjct: 165 LK-KLPDLPPSLEFIAAGN---NQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLE 218

Query: 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391
           + +   N + E   PE+ + P L  +   +N +   +P     L +LN     L  L   
Sbjct: 219 SIVAGNNILEE--LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL--- 272

Query: 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
            P    SL  L   +   + L    P        L YL+ S+N+
Sbjct: 273 -PELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNE 308

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 34/255 (13%), Positives = 71/255 (27%), Gaps = 67/255 (26%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGV---------------- 46
                 L  +    NIL     P++ NL  L  +   +N L  +                
Sbjct: 211 PDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 268

Query: 47  ---IPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN--------------VLALCHN 89
              +P     L  L +     + L   +P  +  L+  +               L + +N
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327

Query: 90  YF------VCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL 143
                      L     + N L   +P +  NL  L    +  N      P    ++ +L
Sbjct: 328 KLIELPALPPRLERLIASFNHL-AEVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDL 382

Query: 144 D----------------KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN 187
                            +L++ +N      P I  +++ L    ++  +++     +   
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHET 438

Query: 188 LSSLTLMSLFNNSLS 202
              L      ++   
Sbjct: 439 TDKLEDDVFEHHHHH 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 1e-30
 Identities = 66/333 (19%), Positives = 133/333 (39%), Gaps = 14/333 (4%)

Query: 106 FNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLK 165
           +  I   L        + +               L+N   +   +++      +++ + +
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
            +  L+L++ Q+      +F    ++  + +  N++    P +  N+  L+ L L  N L
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
           S +      N   L  L + NN L     +  +  TSL  L+L +N L+ V    +  + 
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 192

Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS--GKVNVPKLGTFIISVNNISES 343
            L   N+  N LS     +     +VE +  + N+++        +L    +  NN+++ 
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD- 246

Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQ 403
               + + P L  +DLS N +   +     K+  L +L ++ N+L   + L    +  L+
Sbjct: 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            LDLS N L   + ++     RL  L L +N  
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (297), Expect = 6e-29
 Identities = 66/347 (19%), Positives = 128/347 (36%), Gaps = 19/347 (5%)

Query: 93  CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
           C   + +++  +           LN+   +    +         L +   ++ L L    
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
                        ++ +L +  N +    P  F N+  LT++ L  N LS     I  N 
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272
             L+ L +  N L  +   +    +SL+ L L +N L      ++  + SL    +  N 
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203

Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS---GKVNVPK 329
           LS     ++     +  L+   N ++         LT ++   L  NNL+     +N P 
Sbjct: 204 LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDTAWLLNYPG 255

Query: 330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389
           L    +S N + + +        +L+ L +S+N +V  + +    + +L  L L+ N L 
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

Query: 390 GGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
             +         L+ L L  N +  ++   +     L  L LS+N +
Sbjct: 315 H-VERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (279), Expect = 2e-26
 Identities = 73/427 (17%), Positives = 144/427 (33%), Gaps = 76/427 (17%)

Query: 9   LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
              +++           +   L+N + +   ++ +  +    +    Q+ +L  +  Q+ 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 69  GSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQ 128
             I                                             +++  + +  N 
Sbjct: 89  -EID-------------------------------------TYAFAYAHTIQKLYMGFNA 110

Query: 129 FSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL 188
                P    N+  L  L L  N  S     I  N   L  L +S N L      +F   
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248
           +SL  + L +N L+  +      + SL    +  N L     S++    ++  L   +N 
Sbjct: 171 TSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 222

Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL 308
           + + V   +     L+ L+L  N+L+      + N  GL+ +++  N L   +   F  +
Sbjct: 223 I-NVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEI 368
             +ER+ ++ N L                     ++       P L+VLDLS N+++  +
Sbjct: 278 QRLERLYISNNRLV--------------------ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 369 PVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK-SSIPKSIGNLLRLC 427
                +   L  L L+ N +     L+L +   L+ L LS N    +S+     N+ R  
Sbjct: 317 ERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 373

Query: 428 YLDLSNN 434
             D   +
Sbjct: 374 VDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (262), Expect = 2e-24
 Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 34/322 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
              SF  +  LNL+   +  I          +Q L +G N +  + P    ++  L +L 
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
            + N L  S+P  I                    L    ++NN+L            SL 
Sbjct: 130 LERNDLS-SLPRGIFHNTP--------------KLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
            + LS N+ +    + L  + +L    +  N       S +    ++ +LD S N +   
Sbjct: 175 NLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV- 225

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR 240
             +       LT++ L +N+L+      L N   L  + L  N+L  ++      +  L 
Sbjct: 226 --VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP 300
            LY+ NN L   +    + + +L  L+L  NHL   +  +      L  L +  N +   
Sbjct: 282 RLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

Query: 301 IPKSFKNLTSVERVLLNQNNLS 322
              +   L ++    L+ N+  
Sbjct: 340 KLSTHHTLKNLT---LSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 1e-17
 Identities = 42/270 (15%), Positives = 88/270 (32%), Gaps = 18/270 (6%)

Query: 172 LSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS 231
                    I  +         + +   +           L +   +    + +  +  +
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLN 291
            + +   +  L L +  +         Y  ++ +L +  N +  + PH   N+  L +L 
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 292 MCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-----VNVPKLGTFIISVNNISESIPP 346
           +  N LS      F N   +  + ++ NNL             L    +S N ++  +  
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL 188

Query: 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD 406
                P L   ++S N +       L    ++ +L  + N ++    +     +EL  L 
Sbjct: 189 --SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV---VRGPVNVELTILK 238

Query: 407 LSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           L  N L       + N   L  +DLS N+ 
Sbjct: 239 LQHNNLTD--TAWLLNYPGLVEVDLSYNEL 266

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 21/190 (11%)

Query: 250 YSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT 309
           Y  +   ++Y     ++ +               L    ++    + +         +  
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 310 SVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGEI 368
            VE + LN   +                      I       +  +Q L +  N I    
Sbjct: 76  QVELLNLNDLQIE--------------------EIDTYAFAYAHTIQKLYMGFNAIRYLP 115

Query: 369 PVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCY 428
           P     +  L  L+L  N LS        +  +L  L +S N L+     +      L  
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175

Query: 429 LDLSNNQFGH 438
           L LS+N+  H
Sbjct: 176 LQLSSNRLTH 185

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 6e-30
 Identities = 55/336 (16%), Positives = 109/336 (32%), Gaps = 24/336 (7%)

Query: 108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
           +I  +  N N      ++ +    ++     +  N+ +L L  N  S    + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSG 227
             L+LS N L     L   +LS+L  + L NN +       L    S+  L    N +S 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR 113

Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV-IPHSIGNLTG 286
           V   S       + +YL NN +      +    + +  L+L  N +  V       +   
Sbjct: 114 V---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS----GKVNVPKLGTFIISVNNISE 342
           L  LN+  N +   +         ++ + L+ N L+       +   +    +  N +  
Sbjct: 171 LEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
            I   +  S  L+  DL  N       ++     +     +    +   +  +      +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
             L          +P    + L      L ++   H
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLI----ALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 2e-29
 Identities = 51/321 (15%), Positives = 106/321 (33%), Gaps = 30/321 (9%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
             +        ++ + L   +     +  N++ LDL  N LS +   ++    +L +L  
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
             N L+    L++  LS               L    LNNN +       L    S+ T+
Sbjct: 66  SSNVLYE--TLDLESLS--------------TLRTLDLNNNYVQE-----LLVGPSIETL 104

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG-SI 181
             + N  S    +S         +YL +N  +       G    +  LDL  N++   + 
Sbjct: 105 HAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
                +  +L  ++L  N +   +   +     L  L L  N+L+  +     + + +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           + L NN L   + + +R+  +L   +L  N                 +  + +  +    
Sbjct: 219 ISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 302 PKSFKNLTSVERVLLNQNNLS 322
            ++ +  T             
Sbjct: 277 GQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (289), Expect = 4e-29
 Identities = 64/308 (20%), Positives = 109/308 (35%), Gaps = 31/308 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
              S  ++  L+LS N L  I    +   + L+ L+L SN L   +   +  L+ LR L 
Sbjct: 29  LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVC-------NLANFYLNNNSLFNSIPLVLG 114
            + N +      E+     I  L   +N              N YL NN +     L  G
Sbjct: 87  LNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 115 NLNSLSTMDLSQNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
             + +  +DL  N+    +      +   L+ L L  N     +   +     L  LDLS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLS 199

Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
            N+L   +   F + + +T +SL NN L   +   L   ++L    L  N          
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH------- 250

Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN---HLSGVIPHSIGNLTGLLLL 290
               +LR  +  N  + +   + ++ LT  +E E       H        +       L+
Sbjct: 251 --CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 291 NMCENHLS 298
            +  +H  
Sbjct: 309 ALGHHHHH 316

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  116 bits (293), Expect = 9e-29
 Identities = 74/419 (17%), Positives = 141/419 (33%), Gaps = 54/419 (12%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI-GQLSLINVLALCHN 89
           +++ Y+DL  N ++ +       L  L+ L  +       I       LS + +L     
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL----- 84

Query: 90  YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSI--PLSLGNLSNLDKLY 147
                     L+ N            L +L  + L+Q    G++        L++L+ L 
Sbjct: 85  ---------KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 148 LYSNSFSGSIPSII-GNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLP 206
           L  N+     P+    N++    LDL+ N++         N        L          
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL---------- 185

Query: 207 PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL 266
                L S++   ++   L      +    +S+  L L  NG    + +      + +++
Sbjct: 186 ----RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 267 ELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL--TSVERVLLNQNNLSGK 324
           +               + +  +  +    +   P   +FK L  + V+   L+++ +   
Sbjct: 242 QSLIL-----------SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290

Query: 325 -----VNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQL-GKLFS 377
                 +   L    ++ N I+  I          L  L+LS N + G I  ++   L  
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDK 348

Query: 378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           L  L L+ N +          L  L+ L L TN+LKS        L  L  + L  N +
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (277), Expect = 1e-26
 Identities = 74/387 (19%), Positives = 134/387 (34%), Gaps = 54/387 (13%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           +FS    L  L +       +I       LS+L  L L  NQ   +       L  L +L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC--NLANFYLNNNSLFNSIP-LVLGNLN 117
                 L G++              L  N+F    +L    L +N++    P     N+ 
Sbjct: 109 TLTQCNLDGAV--------------LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
               +DL+ N+        L N        L               L S+   D++E  L
Sbjct: 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQDMNEYWL 200

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL-------------GLHINQ 224
                 +    +S+T + L  N    S+     +  + + +                   
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 225 LSGVIPSSIGNL--SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
                  +   L  S ++   L  + +++ +     + T L +L L  N ++ +  ++  
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG-----KVNVPKLGTFIISV 337
            LT LL LN+ +N L     + F+NL  +E + L+ N++        + +P L    +  
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 338 NNISESIPPEIGDS-PKLQVLDLSSNN 363
           N +  S+P  I D    LQ + L +N 
Sbjct: 381 NQLK-SVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (253), Expect = 2e-23
 Identities = 56/315 (17%), Positives = 100/315 (31%), Gaps = 24/315 (7%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNN 199
           ++++ + L  NS +    +    L+ L  L + +      I   +F  LSSL ++ L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 200 SLSGSLPP-ILGNLKSLSALGLHINQL-SGVIPSSI-GNLSSLRALYLYNNGLYSFVPEE 256
                L       L +L  L L    L   V+  +    L+SL  L L +N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 257 I-RYLTSLSELELCTNHLSGVIPHSIGNLTG--LLLLNMCENHL--------SGPIPKSF 305
               +     L+L  N +  +    + N  G    LL +    L              + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 306 KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV 365
              TS+  + L+ N         +              I   I  +           N  
Sbjct: 209 FKNTSITTLDLSGNGFK------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 366 GEIPVQLGKLF--SLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL 423
                    L    +    L+ +++   +        +L+ L L+ N++      +   L
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 424 LRLCYLDLSNNQFGH 438
             L  L+LS N  G 
Sbjct: 323 THLLKLNLSQNFLGS 337

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 4e-28
 Identities = 82/465 (17%), Positives = 162/465 (34%), Gaps = 54/465 (11%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGV--------------- 46
              S   L  L +S N +  +          L+YLDL  N+L  +               
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSF 99

Query: 47  -------IPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFY 99
                  I  E G+++QL+ L      L  S  L I  L++  VL +    +        
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159

Query: 100 LNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS 159
           L + +  +   +   N      +D+S    +     ++  +   +K   + +  +    +
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 160 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-----SLPPILGNLKS 214
              +  +L  ++ + N  I    L     +++   S+ N  L G            +LK+
Sbjct: 220 PKLSNLTLNNIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           LS   +  +             S++       +G           ++    L+   N L+
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 275 GVIPHSIGNLTGLLLLNMCENHLS--GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGT 332
             +  + G+LT L  L +  N L     I +    + S++++ ++QN++           
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV----------- 386

Query: 333 FIISVNNISESIPPEIGDSP-KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391
                   S             L  L++SSN +   I   L     +  L L+ N++   
Sbjct: 387 --------SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-S 435

Query: 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           +P ++  L  LQ L++++N+LKS        L  L  + L  N +
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.7 bits (238), Expect = 2e-21
 Identities = 70/412 (16%), Positives = 132/412 (32%), Gaps = 48/412 (11%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
                L++  N +S +   +I  L++LRIL    N++   +                   
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLD------------------ 61

Query: 91  FVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS 150
                                V      L  +DLS N+      +S     NL  L L  
Sbjct: 62  -------------------ISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSF 99

Query: 151 NSF-SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL 209
           N+F +  I    GN+  L  L LS   L  S  L   +L+   ++ +   +      P  
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP-- 157

Query: 210 GNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC 269
             L+  +   LHI   +      I ++S      L  + +   + +           +L 
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGKVNVP 328
           TN     +  +    T    + + +      +   S  N+    ++     + SG  ++ 
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG-TSLK 276

Query: 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
            L    +  +               + + + + +       +   K+     L  + N L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 389 SGGMPLELGSLIELQYLDLSTNKLKS--SIPKSIGNLLRLCYLDLSNNQFGH 438
           +  +    G L EL+ L L  N+LK    I +    +  L  LD+S N   +
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.4 bits (188), Expect = 3e-15
 Identities = 43/202 (21%), Positives = 83/202 (41%), Gaps = 16/202 (7%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           + +  F ++   N + +    +       +S   +LD  +N L+  +    GHL +L  L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSL-FNSIPLVLGNLNSL 119
              +NQL   +       + +            +L    ++ NS+ ++          SL
Sbjct: 354 ILQMNQLK-ELSKIAEMTTQMK-----------SLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
            ++++S N  + +I   L     +  L L+SN    SIP  +  L++L +L+++ NQL  
Sbjct: 402 LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458

Query: 180 SIPLSFGNLSSLTLMSLFNNSL 201
                F  L+SL  + L  N  
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 50/198 (25%)

Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 303
              NGL   VP+++      + L +  N++S +    I +L+ L +L +  N +      
Sbjct: 7   RSKNGLIH-VPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 304 SFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
            FK                                               L+ LDLS N 
Sbjct: 64  VFKFNQE-------------------------------------------LEYLDLSHNK 80

Query: 364 IVGEIPVQLGKLFSLNKLILNLNQL-SGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422
           +V    +      +L  L L+ N   +  +  E G++ +L++L LST  L+ S    I +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 423 LLRLCYLDLSNNQFGHKI 440
           L     L +    +G K 
Sbjct: 138 LNISKVLLVLGETYGEKE 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  111 bits (279), Expect = 6e-27
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 5/225 (2%)

Query: 99  YLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP 158
            L+ N +         +L  L  + LS+N        +   L+NL+ L L+ N  +    
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129

Query: 159 SIIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLS 216
                L  L +L L  N  I SIP  +F  + SL  + L        +       L +L 
Sbjct: 130 GAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 217 ALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV 276
            L L +  L  +   ++  L  L  L L  N L +  P   + L  L +L +  + +  +
Sbjct: 189 YLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321
             ++  NL  L+ +N+  N+L+      F  L  +ER+ L+ N  
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (252), Expect = 2e-23
 Identities = 60/244 (24%), Positives = 93/244 (38%), Gaps = 19/244 (7%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
             +   LNL  N +  I      +L +L+ L L  N +  +       L  L  L    N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 66  QLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDL 124
           +L  +IP      LS               L   +L NN + +        + SL  +DL
Sbjct: 123 RLT-TIPNGAFVYLS--------------KLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 125 SQ-NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
            +  + S     +   LSNL  L L   +    IP+ +  L  L +LDLS N L    P 
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPG 225

Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
           SF  L  L  + +  + +         NL+SL  + L  N L+ +       L  L  ++
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285

Query: 244 LYNN 247
           L++N
Sbjct: 286 LHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 6e-22
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 19/226 (8%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           +F    HL  L LS N +  I       L+NL  L+L  N+L+ +      +L++L+ L+
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
              N +  SIP     ++  +  L L                  L          L++L 
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGE-------------LKRLSYISEGAFEGLSNLR 188

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
            ++L+       IP +L  L  LD+L L  N  S   P     L  L +L + ++Q+   
Sbjct: 189 YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQL 225
              +F NL SL  ++L +N+L+  LP  +   L  L  + LH N  
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.7 bits (228), Expect = 3e-20
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 22/223 (9%)

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
           +   L LH NQ+  +  +S  +L  L  L L  N + +        L +L+ LEL  N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333
           + +   +   L+ L  L +  N +      +F  + S+ R+ L +               
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK------------- 171

Query: 334 IISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM 392
                 +S  I          L+ L+L+  N+  EIP  L  L  L++L L+ N LS   
Sbjct: 172 -----RLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIR 223

Query: 393 PLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
           P     L+ LQ L +  ++++     +  NL  L  ++L++N 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 4e-20
 Identities = 62/294 (21%), Positives = 102/294 (34%), Gaps = 47/294 (15%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNS 200
           +   K+     +    +P  I    +   L+L ENQ+      SF +L  L ++ L  N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 201 LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
           +          L +L+ L L  N+L+ +   +   LS L+ L+L NN + S        +
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320
            SL  L+L                            LS     +F+ L+++  + L   N
Sbjct: 160 PSLRRLDLGEL-----------------------KRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 321 LSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNK 380
           L                        P +    KL  LDLS N++    P     L  L K
Sbjct: 197 LRE---------------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 381 LILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
           L +  +Q+         +L  L  ++L+ N L          L  L  + L +N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 13/206 (6%)

Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH 296
           +    +      L   VP+ I   T+   L L  N +  +  +S  +L  L +L +  NH
Sbjct: 43  NQFSKVICVRKNL-REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 297 LSGPIPKSFKNLTSVERVLLNQNNLSG-----KVNVPKLGTFIISVNNISESIPPEI-GD 350
           +      +F  L ++  + L  N L+       V + KL    +  N I  SIP      
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 351 SPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409
            P L+ LDL     +  I       L +L  L L +  L   +P  L  LI+L  LDLS 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSG 216

Query: 410 NKLKSSIPKSIGNLLRLCYLDLSNNQ 435
           N L +  P S   L+ L  L +  +Q
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQ 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 32/153 (20%), Positives = 50/153 (32%), Gaps = 22/153 (14%)

Query: 284 LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISES 343
           L+ LL+  + E   +   P          +V+  + NL                      
Sbjct: 18  LSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLR--------------------E 57

Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQ 403
           +P  I  S   ++L+L  N I          L  L  L L+ N +          L  L 
Sbjct: 58  VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115

Query: 404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            L+L  N+L +    +   L +L  L L NN  
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             +    L  L+LS N L  I P     L +LQ L +  +Q+  +      +L  L  + 
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCN 94
              N L   +P ++   L  +  + L HN + CN
Sbjct: 262 LAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCN 294

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (268), Expect = 4e-26
 Identities = 62/273 (22%), Positives = 109/273 (39%), Gaps = 22/273 (8%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
           + A   L NN +         NL +L T+ L  N+ S   P +   L  L++LYL  N  
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL-SGSLPP-ILGN 211
              +P      K+L +L + EN++       F  L+ + ++ L  N L S  +       
Sbjct: 113 K-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 212 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271
           +K LS + +    ++ +     G   SL  L+L  N +       ++ L +L++L L  N
Sbjct: 170 MKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 272 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLG 331
            +S V   S+ N   L  L++  N L   +P    +   ++ V L+ NN+S         
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS--------- 276

Query: 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNI 364
               ++ +     P           + L SN +
Sbjct: 277 ----AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 1e-25
 Identities = 63/286 (22%), Positives = 107/286 (37%), Gaps = 27/286 (9%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
            P    L+L  N +  I      NL NL  L L +N++S + P     L +L  LY   N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVC----------NLANFYLNNNSLFNSI--PLVL 113
           QL     L       +  L +  N               +    L  N L +S       
Sbjct: 111 QLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
             +  LS + ++    + +IP  L    +L +L+L  N  +    + +  L +L +L LS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
            N +      S  N   L  + L NN L   +P  L + K +  + LH N +S +  +  
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 234 G------NLSSLRALYLYNNGL-YSFVPEEI-RYLTSLSELELCTN 271
                    +S   + L++N + Y  +     R +   + ++L   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 1e-25
 Identities = 70/346 (20%), Positives = 120/346 (34%), Gaps = 51/346 (14%)

Query: 93  CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
           C+L     ++  L   +P  L      + +DL  N+ +        NL NL  L L +N 
Sbjct: 31  CHLRVVQCSDLGL-EKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
            S   P     L  L +L LS+NQL     L      +L  + +  N ++     +   L
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGL 144

Query: 213 KSLSALGLHINQL--SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT 270
             +  + L  N L  SG+   +   +  L  + + +  + + +P+ +    SL+EL L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDG 201

Query: 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKL 330
           N ++ V   S+  L  L  L +  N +S     S  N   +  + LN N L         
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------- 253

Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
                        +P  + D   +QV+ L +NNI                    +     
Sbjct: 254 ------------KVPGGLADHKYIQVVYLHNNNIS------------------AIGSNDF 283

Query: 391 GMPLELGSLIELQYLDLSTNKLK-SSIPKSI-GNLLRLCYLDLSNN 434
             P           + L +N ++   I  S    +     + L N 
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 7e-22
 Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 33/274 (12%)

Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
            L  +  S+  L   +P          L+ L NN ++        NLK+L  L L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
           S + P +   L  L  LYL  N L   +PE++    +L EL +  N ++ V       L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 286 GLLLLNMCENHLSGPI--PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISES 343
            ++++ +  N L        +F+ +  +  + +   N++                    +
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--------------------T 185

Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
           IP   G  P L  L L  N I  ++    L  L +L KL L+ N +S      L +   L
Sbjct: 186 IPQ--GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           + L L+ NKL   +P  + +   +  + L NN  
Sbjct: 243 RELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNI 275

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (265), Expect = 5e-26
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 3/206 (1%)

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
           +   + L  N+ S     S     NL  L+L+SN  +    +    L  L QLDLS+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 178 IGSIPLS-FGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGN 235
           + S+  + F  L  L  + L    L   L P +   L +L  L L  N L  +   +  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
           L +L  L+L+ N + S      R L SL  L L  N ++ V PH+  +L  L+ L +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNL 321
           +LS    ++   L +++ + LN N  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 3e-23
 Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 25/248 (10%)

Query: 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ 176
               T    Q     ++P+ +   +   +++L+ N  S    +     ++L  L L  N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGN 235
           L      +F  L+ L  + L +N+   S+ P     L  L  L L    L  + P     
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
           L++L+ LYL +N L +   +  R L +L+ L L  N +S V   +   L  L  L + +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS-PKL 354
            ++   P +F++L  +  + L  NNLS                    ++P E       L
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLS--------------------ALPTEALAPLRAL 227

Query: 355 QVLDLSSN 362
           Q L L+ N
Sbjct: 228 QYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 50/246 (20%), Positives = 82/246 (33%), Gaps = 45/246 (18%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                 + L  N +  +         NL  L L SN L+ +       L  L  L     
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL----- 85

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDL 124
                                             L++N+   S+       L  L T+ L
Sbjct: 86  ---------------------------------DLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 125 SQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIP 182
            +      +       L+ L  LYL  N+   ++P     +L +L  L L  N++     
Sbjct: 113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE 170

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
            +F  L SL  + L  N ++  + P    +L  L  L L  N LS +   ++  L +L+ 
Sbjct: 171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 242 LYLYNN 247
           L L +N
Sbjct: 230 LRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 8e-18
 Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 19/203 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
           +F +  +L  L L  N+L  I       L+ L+ LDL  N     +       L +L  L
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 61  YFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP-LVLGNLNS 118
           + D   L   +   +   L+               L   YL +N+L  ++P     +L +
Sbjct: 111 HLDRCGLQ-ELGPGLFRGLA--------------ALQYLYLQDNAL-QALPDDTFRDLGN 154

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L+ + L  N+ S     +   L +LD+L L+ N  +   P    +L  L+ L L  N L 
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 179 GSIPLSFGNLSSLTLMSLFNNSL 201
                +   L +L  + L +N  
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 22/225 (9%)

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN-H 272
           +   + LH N++S V  +S     +L  L+L++N L          L  L +L+L  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGT 332
           L  V P +   L  L  L++    L    P  F+ L +++ + L  N L           
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ---------- 142

Query: 333 FIISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391
                     ++P +   D   L  L L  N I          L SL++L+L+ N+++  
Sbjct: 143 ----------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            P     L  L  L L  N L +   +++  L  L YL L++N +
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 7e-16
 Identities = 43/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
           +P  I   ++ + ++L+ N +        R   +L+ L L +N L+ +   +   L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 289 LLNMCENHLSGPIPKS-FKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPE 347
            L++ +N     +  + F  L  +  + L++  L                      + P 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--------------------ELGPG 123

Query: 348 I-GDSPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYL 405
           +      LQ L L  N +   +P      L +L  L L+ N++S         L  L  L
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 406 DLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
            L  N++    P +  +L RL  L L  N 
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 42/196 (21%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
                 GL   VP  I    +   + L  N +S V   S      L +L +  N L+   
Sbjct: 16  TSCPQQGL-QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 302 PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI-GDSPKLQVLDLS 360
             +F  L  +E++ L+ N                       S+ P       +L  L L 
Sbjct: 73  AAAFTGLALLEQLDLSDNA-------------------QLRSVDPATFHGLGRLHTLHLD 113

Query: 361 SNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKS 419
              +  E+       L +L  L L  N L          L  L +L L  N++ S   ++
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 420 IGNLLRLCYLDLSNNQ 435
              L  L  L L  N+
Sbjct: 173 FRGLHSLDRLLLHQNR 188

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  108 bits (272), Expect = 5e-26
 Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 5/230 (2%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
           N     L  N++         +L+ L  + L +N        +   L++L+ L L+ N  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPP-ILGN 211
           +         L  L +L L  N  I SIP  +F  + SL  + L        +       
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 212 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271
           L +L  L L +  +  +   ++  L  L  L +  N      P     L+SL +L +  +
Sbjct: 195 LFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 272 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321
            +S +  ++   L  L+ LN+  N+LS      F  L  +  + L+ N  
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (259), Expect = 3e-24
 Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 17/243 (6%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
             +  +LNL  N +  I      +L +L+ L LG N +  +       L  L  L    N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
            L       I   +   +           L   +L NN + +        + SL  +DL 
Sbjct: 134 WLT-----VIPSGAFEYLS---------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 126 Q-NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS 184
           +  +       +   L NL  L L   +    +P+ +  L  L +L++S N      P S
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGS 237

Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL 244
           F  LSSL  + + N+ +S         L SL  L L  N LS +       L  L  L+L
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 245 YNN 247
           ++N
Sbjct: 298 HHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 5e-22
 Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 21/227 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F    HL  L L  N +  I       L++L  L+L  N L+ +      +L++LR L+
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSL 119
              N +  SIP     ++               +L    L        I       L +L
Sbjct: 154 LRNNPIE-SIPSYAFNRVP--------------SLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
             ++L        +P +L  L  L++L +  N F    P     L SL +L +  +Q+  
Sbjct: 199 KYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQL 225
               +F  L+SL  ++L +N+LS SLP  +   L+ L  L LH N  
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 1e-20
 Identities = 64/296 (21%), Positives = 102/296 (34%), Gaps = 47/296 (15%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNS 200
           +   K+       S  +P  I    +   L+L EN +      +F +L  L ++ L  NS
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 201 LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
           +          L SL+ L L  N L+ +   +   LS LR L+L NN + S        +
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320
            SL  L+L                            L      +F+ L +++ + L   N
Sbjct: 171 PSLMRLDLGEL-----------------------KKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 321 LSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNK 380
           +                        P +     L+ L++S N+     P     L SL K
Sbjct: 208 IKD---------------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 381 LILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           L +  +Q+S         L  L  L+L+ N L S        L  L  L L +N +
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             +    L  L +S N    I P     LS+L+ L + ++Q+S +       L  L  L 
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCN 94
              N L  S+P ++   L  +  L L HN + C+
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCD 305

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (266), Expect = 5e-25
 Identities = 64/404 (15%), Positives = 123/404 (30%), Gaps = 52/404 (12%)

Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
                  + N    ++      ++    L L    LS  +P  +    Q+ +L    N L
Sbjct: 38  KQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL 92

Query: 68  HGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQN 127
             S+P     L                       +N L +++P +  +L  L   D+  N
Sbjct: 93  I-SLPELPASLE-----------------YLDACDNRL-STLPELPASLKHL---DVDNN 130

Query: 128 QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN 187
           Q +  +P     L     +   +N  +  +P +  +L+ L    +  NQL   +P    +
Sbjct: 131 QLT-MLPELPALLE---YINADNNQLT-MLPELPTSLEVL---SVRNNQL-TFLPELPES 181

Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLS----ALGLHINQLSGVIPSSIGNLSSLRALY 243
           L +L    +  N L  SLP +                  N+++  IP +I +L     + 
Sbjct: 182 LEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 303
           L +N L S + E +   T+  +      + S        N     L +            
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQS 294

Query: 304 SFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
               +        + N  S  ++         + +   E +   +        L   S  
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFA 354

Query: 364 IVGEIPVQLGKLFSLNKLILNLNQL-----SGGMPLELGSLIEL 402
           +  +         +L    L    L      G    + G+L+ L
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (259), Expect = 5e-24
 Identities = 57/298 (19%), Positives = 105/298 (35%), Gaps = 44/298 (14%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIP-LEIGHLNQLRILYFDVNQLHGS 70
            N  +N + G            +   L     +  +  L+   +NQ   L  +   L  S
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-S 73

Query: 71  IPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFS 130
           +P  +                   +    +  N+L  S+P +  +L  L   D   N+ S
Sbjct: 74  LPDNLPP----------------QITVLEITQNAL-ISLPELPASLEYL---DACDNRLS 113

Query: 131 GSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSS 190
            ++P    +L +LD   + +N  +  +P +   L+    ++   NQL   +P    +L  
Sbjct: 114 -TLPELPASLKHLD---VDNNQLT-MLPELPALLEY---INADNNQL-TMLPELPTSLEV 164

Query: 191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR----ALYLYN 246
           L   S+ NN L+  LP +  +L++L    +  N L   +P+                   
Sbjct: 165 L---SVRNNQLT-FLPELPESLEALD---VSTNLLES-LPAVPVRNHHSEETEIFFRCRE 216

Query: 247 NGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS 304
           N + + +PE I  L     + L  N LS  I  S+   T     +    + S    + 
Sbjct: 217 NRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.4 bits (237), Expect = 3e-21
 Identities = 57/316 (18%), Positives = 107/316 (33%), Gaps = 52/316 (16%)

Query: 132 SIPLSLGNLSNLDKLYLYSN--SFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLS 189
           SI L + N  +L +   Y+          S     +       + N+ +  +      ++
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59

Query: 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 249
             + + L   +LS SLP  L     ++ L +  N L   +P    +L     L   +N L
Sbjct: 60  QFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNRL 112

Query: 250 YSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT 309
            +  PE      SL  L++  N L+ ++P     L     +N   N L+  +P+   +L 
Sbjct: 113 STL-PELP---ASLKHLDVDNNQLT-MLPELPALLE---YINADNNQLTM-LPELPTSLE 163

Query: 310 SVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP 369
            +    +  N L                      +P        L+ LD+S+N +   +P
Sbjct: 164 VLS---VRNNQL--------------------TFLPELPE---SLEALDVSTNLLE-SLP 196

Query: 370 VQLGKLFSLNKLILNL----NQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425
               +     +  +      N+++  +P  + SL     + L  N L S I +S+     
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 426 LCYLDLSNNQFGHKIL 441
                     F     
Sbjct: 256 QPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.0 bits (236), Expect = 3e-21
 Identities = 63/317 (19%), Positives = 115/317 (36%), Gaps = 50/317 (15%)

Query: 108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSI-IGNLKS 166
           SI L + N  SLS  +   N  SG+           +K  L   + + ++  +    +  
Sbjct: 2   SIMLPINNNFSLSQ-NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
             +L L+   L  S+P +      +T++ +  N+L  SLP +  +L+ L A    ++ L 
Sbjct: 61  FSELQLNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDNRLSTL- 115

Query: 227 GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG 286
              P    +L   + L + NN L + +PE       L  +    N L+ ++P    +L  
Sbjct: 116 ---PELPASL---KHLDVDNNQL-TMLPELP---ALLEYINADNNQLT-MLPELPTSLEV 164

Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP 346
           L + N   N L+  +P+  ++L +++   ++ N L                    ES+P 
Sbjct: 165 LSVRN---NQLTF-LPELPESLEALD---VSTNLL--------------------ESLPA 197

Query: 347 EIGDSPKLQ----VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
               +   +          N I   IP  +  L     +IL  N LS  +   L      
Sbjct: 198 VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 403 QYLDLSTNKLKSSIPKS 419
                       S  + 
Sbjct: 257 PDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.6 bits (214), Expect = 2e-18
 Identities = 54/273 (19%), Positives = 88/273 (32%), Gaps = 42/273 (15%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
            P +  L ++ N L   +P       +L+YLD   N+LS  +P     L  L +     N
Sbjct: 79  PPQITVLEITQNAL-ISLPELPA---SLEYLDACDNRLS-TLPELPASLKHLDVDN---N 130

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
           QL   +P     L  IN                  +NN L   +P +  +L  L    + 
Sbjct: 131 QLT-MLPELPALLEYIN-----------------ADNNQL-TMLPELPTSLEVL---SVR 168

Query: 126 QNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ----LDLSENQLIGSI 181
            NQ +  +P    +L  LD   + +N    S+P++        +        EN+ I  I
Sbjct: 169 NNQLT-FLPELPESLEALD---VSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR-ITHI 222

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           P +  +L     + L +N LS  +   L    +           S        N      
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPL 280

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
                         ++  +    E E   N  S
Sbjct: 281 ADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 7e-14
 Identities = 52/327 (15%), Positives = 103/327 (31%), Gaps = 44/327 (13%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
                L HL++  N L  ++P        L+Y++  +NQL+ ++P     L  L +    
Sbjct: 117 ELPASLKHLDVDNNQL-TMLPELPA---LLEYINADNNQLT-MLPELPTSLEVLSVRN-- 169

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM- 122
            NQL   +P     L  ++                 ++ N L  S+P V    +      
Sbjct: 170 -NQL-TFLPELPESLEALD-----------------VSTNLL-ESLPAVPVRNHHSEETE 209

Query: 123 ---DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
                 +N+ +  IP ++ +L     + L  N  S  I   +    +             
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF-- 266

Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
           S+     N     L          +    +  +        H N  S      + +  S 
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA-FLDRLSDTVSA 325

Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL-- 297
           R    +   + +++ +    L++ +EL   +  ++     S  +   L   N+ +  L  
Sbjct: 326 RNTSGFREQVAAWLEK----LSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVH 381

Query: 298 ---SGPIPKSFKNLTSVERVLLNQNNL 321
               G        L S+ R +     L
Sbjct: 382 QASEGLFDNDTGALLSLGREMFRLEIL 408

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 3e-24
 Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 6/234 (2%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQ--FSGSIPLSLGNLSNLDKLYLYSN 151
           +     L +N L +    V   L  L+ + LS N   F G    S    ++L  L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 152 SFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILG 210
               ++ S    L+ L  LD   + L      S F +L +L  + + +     +   I  
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 211 NLKSLSALGLHINQ-LSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC 269
            L SL  L +  N      +P     L +L  L L    L    P     L+SL  L + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL-TSVERVLLNQNNLS 322
            N+   +       L  L +L+   NH+     +  ++  +S+  + L QN+ +
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 20/247 (8%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLS--GVIPLEIGHLNQLRILYFD 63
                 L L  N L  +       L+ L  L L SN LS  G           L+ L   
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTM 122
            N +  ++      L                L +    +++L       V  +L +L  +
Sbjct: 87  FNGVI-TMSSNFLGLE--------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSI 181
           D+S      +       LS+L+ L +  NSF  +    I   L++L  LDLS+ QL    
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL-SSLR 240
           P +F +LSSL ++++ +N+           L SL  L   +N +       + +  SSL 
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251

Query: 241 ALYLYNN 247
            L L  N
Sbjct: 252 FLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 60/268 (22%), Positives = 99/268 (36%), Gaps = 41/268 (15%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           +P  I   S+   L+L SN+L  +       L QL  L    N L               
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL--------------- 64

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN 142
                                S             SL  +DLS N    ++  +   L  
Sbjct: 65  ---------------------SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 102

Query: 143 LDKLYLYSNSFSGSIP-SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL 201
           L+ L    ++       S+  +L++L+ LD+S      +    F  LSSL ++ +  NS 
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 202 SGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
             +  P I   L++L+ L L   QL  + P++  +LSSL+ L + +N  +S      + L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLL 288
            SL  L+   NH+       + +    L
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSL 250

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 28/276 (10%)

Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
           S  ++  +   L  S+P      SS T + L +N L      +   L  L+ L L  N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 226 S--GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-G 282
           S  G    S    +SL+ L L  NG+ + +      L  L  L+   ++L  +   S+  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE 342
           +L  L+ L++   H        F  L+S                   L    ++ N+  E
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSS-------------------LEVLKMAGNSFQE 164

Query: 343 SIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE 401
           +  P+I  +   L  LDLS   +    P     L SL  L ++ N            L  
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 402 LQYLDLSTNKLKSSIPKSIGNLLR-LCYLDLSNNQF 436
           LQ LD S N + +S  + + +    L +L+L+ N F
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRI 59
            +      L +L+LSFN +   +      L  L++LD   + L  +    +   L  L  
Sbjct: 72  QSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 60  LYFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNS 118
           L              I   LS + VL +               N+   N +P +   L +
Sbjct: 131 LDISHTHTR-VAFNGIFNGLSSLEVLKMAG-------------NSFQENFLPDIFTELRN 176

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L+ +DLSQ Q     P +  +LS+L  L +  N+F          L SL  LD S N ++
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 179 GSIPLSFGNL-SSLTLMSLFNNSLS 202
            S      +  SSL  ++L  N  +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (253), Expect = 5e-24
 Identities = 57/275 (20%), Positives = 106/275 (38%), Gaps = 16/275 (5%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNS 200
             +  L L +N  +    S +    +L  L L+ N +      SF +L SL  + L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 201 LSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSI-GNLSSLRALYLYNNGLYSFVPEEI- 257
           LS +L       L SL+ L L  N    +  +S+  +L+ L+ L + N   ++ +  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 258 RYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLN 317
             LT L ELE+  + L    P S+ ++  +  L +        +       +SVE + L 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 318 QNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS 377
             +L                + +S      +      + + ++  ++  ++   L ++  
Sbjct: 231 DTDLDT-----------FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG 278

Query: 378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
           L +L  + NQL          L  LQ + L TN  
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (251), Expect = 1e-23
 Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 25/256 (9%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
                 +L  L L+ N +  I      +L +L++LDL  N LS +       L+ L  L 
Sbjct: 71  DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLS 120
              N         +G+ SL + L          L    + N   F  I       L  L 
Sbjct: 131 LLGNPYK-----TLGETSLFSHLT--------KLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSII-GNLKSLLQLDLSENQLIG 179
            +++  +      P SL ++ N+  L L+       +  I      S+  L+L +  L  
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236

Query: 180 S--------IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS 231
                       S     +   + + + SL   +  +L  +  L  L    NQL  V   
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDG 295

Query: 232 SIGNLSSLRALYLYNN 247
               L+SL+ ++L+ N
Sbjct: 296 IFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.5 bits (243), Expect = 1e-22
 Identities = 51/281 (18%), Positives = 95/281 (33%), Gaps = 32/281 (11%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
            + +  L+NN +       L    +L  + L+ N  +     S  +L +L+ L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPP-ILGN 211
           S    S    L SL  L+L  N        S F +L+ L ++ + N      +       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 212 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271
           L  L  L +  + L    P S+ ++ ++  L L+       +   +   +S+  LEL   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 272 HLSGVIPHSI--------GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 323
            L       +                + + +  L   + K    ++ +  +  ++N L  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK- 290

Query: 324 KVNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNN 363
                              S+P  I D    LQ + L +N 
Sbjct: 291 -------------------SVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.7 bits (241), Expect = 3e-22
 Identities = 57/301 (18%), Positives = 108/301 (35%), Gaps = 49/301 (16%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
             ++ LDL +N+++ +   ++     L+ L    N ++ +I                   
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE------------------ 92

Query: 91  FVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS 150
                                   +L SL  +DLS N  S         LS+L  L L  
Sbjct: 93  -------------------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 151 NSFSGSIPSII-GNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPPI 208
           N +     + +  +L  L  L +        I    F  L+ L  + +  + L    P  
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI--------RYL 260
           L +++++S L LH+ Q   ++   +   SS+  L L +  L +F   E+           
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320
            +   +++    L   +   +  ++GLL L    N L       F  LTS++++ L+ N 
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

Query: 321 L 321
            
Sbjct: 313 W 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 4e-19
 Identities = 59/263 (22%), Positives = 104/263 (39%), Gaps = 20/263 (7%)

Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248
            ++  + L NN ++      L    +L AL L  N ++ +   S  +L SL  L L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-GNLTGLLLLNMCENHLSGPIP-KSFK 306
           L +      + L+SL+ L L  N    +   S+  +LT L +L +        I  K F 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 307 NLTSVERVLLNQNNLSGK-----VNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLS 360
            LT +E + ++ ++L         ++  +   I+ +      +     D    ++ L+L 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 361 SNNIVGEIPVQL--------GKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
             ++      +L         K F+   + +    L   M L L  +  L  L+ S N+L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQL 289

Query: 413 KSSIPKSI-GNLLRLCYLDLSNN 434
           K S+P  I   L  L  + L  N
Sbjct: 290 K-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 49/238 (20%), Positives = 97/238 (40%), Gaps = 18/238 (7%)

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
           ++ +L L  N+++ +  S +    +L+AL L +NG+ +   +    L SL  L+L  N+L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLNQNNLSGKV------N 326
           S +       L+ L  LN+  N        S F +LT ++ + +   +   K+       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 327 VPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL-- 383
           +  L    I  +++  S  P+   S   +  L L     +  + + +    S+  L L  
Sbjct: 173 LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 384 ------NLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
                 + ++LS G    L      + + ++   L   + K +  +  L  L+ S NQ
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQ 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 7e-14
 Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 21/218 (9%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
           IPS +    ++++L L NN +      +++   +L  L L +N ++ +   S  +L  L 
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
            L++  N+LS      FK L+S+  + L  N       + +   F               
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLF--------------- 145

Query: 349 GDSPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL 407
               KLQ+L + + +   +I  +    L  L +L ++ + L    P  L S+  + +L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE 445
              +    +   +     +  L+L +         EL 
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 23/221 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRI 59
           +FSS   L HL+LS+N L   +       LS+L +L+L  N    +    +  HL +L+I
Sbjct: 95  SFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 60  LYFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVC----------NLANFYLNNNSLFNS 108
           L          I  +    L+ +  L +  +              N+++  L+       
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 109 IPLVLGNLNSLSTMDLSQN--------QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSI 160
           + + +   +S+  ++L           + S     SL        + +   S    +  +
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 161 IGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL 201
           +  +  LL+L+ S NQL       F  L+SL  + L  N  
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (256), Expect = 1e-23
 Identities = 75/462 (16%), Positives = 155/462 (33%), Gaps = 50/462 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             S    L  L LS N +  +         +L+YLD+  N+L     +    +  LR L 
Sbjct: 71  DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLD 127

Query: 62  FDVNQLHGSIP---------------LEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF 106
              N     +P               L   +   +++L + H +  C L +    +    
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD--KLYLYSNSFSGSIPSIIGNL 164
            +  L + N   L  +    + FS  + +S+  L +L    + L   +    +  +    
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 165 KSLLQLDLSENQLIGSIP-----LSFGNLSSLTLMSLFNNSLSGSLPPILGN-----LKS 214
           +    L+++   +  +         F     +  ++++N +++  +           LKS
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           L    +          +     + +    L  +             +S + L    N  +
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFI 334
             +      L  L  L +  N L     K      ++  +     +L+   +     T  
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC- 424

Query: 335 ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
                           +  + VL+LSSN + G +   L     +  L L+ N++   +P 
Sbjct: 425 --------------AWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPK 467

Query: 395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           ++  L  LQ L++++N+LKS        L  L Y+ L +N +
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.3 bits (237), Expect = 3e-21
 Identities = 77/432 (17%), Positives = 156/432 (36%), Gaps = 47/432 (10%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
              + L L  N +S +   +I  L++LR+L    N++  S+   +               
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFL------------- 97

Query: 91  FVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLS--LGNLSNLDKLYL 148
           F  +L    +++N L  +I      + SL  +DLS N F   +P+    GNL+ L  L L
Sbjct: 98  FNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGL 153

Query: 149 YSNSF-SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
            +  F    +  +     S + LDL    + G    S    ++  L  L  +  S     
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQ 212

Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNL-------SSLRALYLYNNGLYSFVPEEI--- 257
           +  ++ +L  L L   +L+      +           +L  + L +         ++   
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 258 RYLTSLSELELCTNHLSGVIPHSIGN-----LTGLLLLNMCENHLSGPIPKSFKNLTSVE 312
            +   +  L +    ++  I           L  L++ ++            +     + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 313 RVLLNQNNLSGKVNVP-----KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI--V 365
             +L+ ++      V             + N  ++S+        +LQ L L  N +   
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE-LQYLDLSTNKLKSSIPKSIGNLL 424
            ++ +    + SL  L ++LN L+        +  E +  L+LS+N L  S+ + +   +
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452

Query: 425 RLCYLDLSNNQF 436
           +   LDL NN+ 
Sbjct: 453 K--VLDLHNNRI 462

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 54/272 (19%), Positives = 100/272 (36%), Gaps = 21/272 (7%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
           +     L NN +          L  L  + L  N+ S     +   L  L KLY+  N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL-SGSLPPILGNL 212
              IP       SL++L + +N++       F  L ++  + +  N L +    P   + 
Sbjct: 115 V-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272
             L+ L +   +L+G+         +L  L+L +N + +   E++   + L  L L  N 
Sbjct: 172 LKLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGT 332
           +  +   S+  L  L  L++  N LS  +P    +L  ++ V L+ NN++          
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT---------- 277

Query: 333 FIISVNNISESIPPEIGDSPKLQVLDLSSNNI 364
               V                   + L +N +
Sbjct: 278 ---KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 5e-22
 Identities = 64/283 (22%), Positives = 106/283 (37%), Gaps = 28/283 (9%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
            P    L+L  N +  +       L +L  L L +N++S +       L +L+ LY   N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVC----------NLANFYLNNNSLFNSI--PLVL 113
            L     +     S +  L +  N              N+    +  N L NS   P   
Sbjct: 113 HLVE---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
             L  L+ + +S+ + +  IP  L     L++L+L  N         +     L +L L 
Sbjct: 170 DGLK-LNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225

Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
            NQ+      S   L +L  + L NN LS  +P  L +LK L  + LH N ++ V  +  
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 234 ------GNLSSLRALYLYNNGL-YSFVPEEI-RYLTSLSELEL 268
                    +    + L+NN + Y  V     R +T    ++ 
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 6e-22
 Identities = 55/328 (16%), Positives = 101/328 (30%), Gaps = 40/328 (12%)

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
            L  +  S      ++P  +    +   L L +N  S         L+ L  L L  N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
                 +F  L  L  + +  N L   +PP      SL  L +H N++  V       L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 238 SLRALYLYNNGLYSF-VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH 296
           ++  + +  N L +            L+ L +    L+G+       L  L L +   N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH---NK 204

Query: 297 LSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI-GDSPKLQ 355
           +     +     + + R+ L  N +                      I        P L+
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIR--------------------MIENGSLSFLPTLR 244

Query: 356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG------GMPLELGSLIELQYLDLST 409
            L L +N +   +P  L  L  L  + L+ N ++                     + L  
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 410 NKLKSSI--PKSIGNLLRLCYLDLSNNQ 435
           N +      P +   +     +   N +
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 69/274 (25%), Positives = 104/274 (37%), Gaps = 34/274 (12%)

Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
            L  +  S+  L  ++P         TL+ L NN +S         L+ L AL L  N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
           S +   +   L  L+ LY+  N L   +P  +   +SL EL +  N +  V       L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 286 GLLLLNMCENHLSGPI--PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISES 343
            +  + M  N L      P +F  L                    KL    IS   ++  
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL--------------------KLNYLRISEAKLT-G 186

Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
           IP ++     L  L L  N I   I ++ L +   L +L L  NQ+       L  L  L
Sbjct: 187 IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           + L L  NKL S +P  + +L  L  + L  N  
Sbjct: 244 RELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNI 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.1 bits (228), Expect = 3e-20
 Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 17/229 (7%)

Query: 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222
                ++ +L +  +  ++  +   L+S+  +   N+ +  S+   +  L +++ L L+ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
           N+L+ +    + NL +L  L+L  N +       ++ L  L  L L  N +S +    + 
Sbjct: 75  NKLTDI--KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING--LV 128

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKVNVPKLGTFIISVNN 339
           +L  L  L +  N ++         LT ++ + L  N   ++     + KL    +S N+
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 186

Query: 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
           IS+     +     L VL+L S   + +       L   N +      L
Sbjct: 187 ISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.9 bits (217), Expect = 8e-19
 Identities = 65/327 (19%), Positives = 117/327 (35%), Gaps = 33/327 (10%)

Query: 29  NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88
             +     +L    ++  +      LN +  +  + +         I  +  I  L    
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD--------IKSVQGIQYLP--- 65

Query: 89  NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYL 148
                N+   +LN N L +  P  L NL +L  + L +N+    +  SL +L  L  L L
Sbjct: 66  -----NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116

Query: 149 YSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPI 208
             N  S  I   + +L  L  L L  N++     LS   L+ L  +SL +N +S  + P 
Sbjct: 117 EHNGIS-DING-LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP- 170

Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L  L  L  L L  N +S +   ++  L +L  L L++    +        L   + ++ 
Sbjct: 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVP 328
               L    P  I +       N+  +        SF     V  +   +    G+V  P
Sbjct: 229 TDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT-IGKAKARFHGRVTQP 285

Query: 329 KLGTFIISVNNISESIPPEIGDSPKLQ 355
               + +S +     I  ++    ++ 
Sbjct: 286 LKEVYTVSYDVDGTVIKTKVEAGTRIT 312

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 1e-18
 Identities = 55/280 (19%), Positives = 103/280 (36%), Gaps = 32/280 (11%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F   +F   +  NL    +   +      L+++  +   ++ +  V  ++  +L  +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 70

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
           + + N+        +  +  +  L         NL   +L+ N + +     L +L  L 
Sbjct: 71  FLNGNK--------LTDIKPLTNLK--------NLGWLFLDENKIKDLSS--LKDLKKLK 112

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
           ++ L  N  S  I   L +L  L+ LYL +N    +  +++  L  L  L L +NQ I  
Sbjct: 113 SLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ-ISD 167

Query: 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLR 240
           I      L+ L  + L  N +S  L   L  LK+L  L L   +      +   NL    
Sbjct: 168 IV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 241 ALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHS 280
            +   +  L +  PE I       +  +  +        S
Sbjct: 225 TVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.8 bits (204), Expect = 4e-17
 Identities = 53/301 (17%), Positives = 111/301 (36%), Gaps = 37/301 (12%)

Query: 95  LANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154
           +      +  +    P            +L +   + ++  +   L+++D++   ++   
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
            S+   I  L ++ +L L+ N+L    PL+  NL +L  + L  N +   L   L +LK 
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIK-DLSS-LKDLKK 110

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           L +L L  N +S +  + + +L  L +LYL NN +       +  LT L  L L  N +S
Sbjct: 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166

Query: 275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFI 334
            ++P  +  LT L  L + +NH+S                     +L     +  L    
Sbjct: 167 DIVP--LAGLTKLQNLYLSKNHIS---------------------DLRALAGLKNLDVLE 203

Query: 335 ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
           +              +      +  +  ++V    +     +    +  +L + +  +  
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 395 E 395
            
Sbjct: 264 I 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 6e-16
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 35/237 (14%)

Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
                      L    ++  +      L+S+  +   N+ + S   + I+YL ++++L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL 72

Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVP 328
             N L+ + P  + NL  L  L + EN +                      +LS   ++ 
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIK---------------------DLSSLKDLK 109

Query: 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
           KL +  +  N IS  I   +   P+L+ L L +N I  +I V L +L  L+ L L  NQ+
Sbjct: 110 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI 165

Query: 389 SGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE 445
           S  +PL    L +LQ L LS N +     +++  L  L  L+L + +  +K +    
Sbjct: 166 SDIVPLA--GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQS 218

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 3e-15
 Identities = 61/369 (16%), Positives = 120/369 (32%), Gaps = 29/369 (7%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            +    +  +  + + +  +    I  L N+  L L  N+L+ + PL   +L  L  L+ 
Sbjct: 39  QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFL 94

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
           D N           ++  ++ L          L +  L +N + + I   L +L  L ++
Sbjct: 95  DEN-----------KIKDLSSLKDLK-----KLKSLSLEHNGI-SDIN-GLVHLPQLESL 136

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
            L  N+ +    LS   L+ LD L L  N  S  I   +  L  L  L LS+N +     
Sbjct: 137 YLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA 192

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
           L+   L +L ++ LF+            NL   + +      L      S         +
Sbjct: 193 LA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT-GLLLLNMCENHLSGPI 301
             +     + V        ++ + +   +         +  ++  +    +     +G  
Sbjct: 251 KWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTR 310

Query: 302 PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS 361
             + K  T    V           +     T  +S N+ +     +   + K   L    
Sbjct: 311 ITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYV 370

Query: 362 NNIVGEIPV 370
             I G   +
Sbjct: 371 KYIRGNAGI 379

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 15/176 (8%)

Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN-- 320
           + E    +  +  + P         +  N+ +  ++  +      L S+++++ N ++  
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 321 -LSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN 379
            + G   +P +    ++ N ++  I P + +   L  L L  N I  ++   L  L  L 
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLK 112

Query: 380 KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
            L L  N +S    L    L +L+ L L  NK+       +  L +L  L L +NQ
Sbjct: 113 SLSLEHNGISDINGLV--HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 164

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.9 bits (226), Expect = 6e-20
 Identities = 63/397 (15%), Positives = 127/397 (31%), Gaps = 44/397 (11%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
                 L  L+   + +  +    I  L+ L  L   SN ++    L++     L  L  
Sbjct: 38  EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLAC 92

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVC-------NLANFYLNNNSLFNSIPLVLGN 115
           D N+L     L++  L+ +  L    N            L       N+L     + + +
Sbjct: 93  DSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE---IDVSH 146

Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
              L+ +D   N+    + ++    + L  L    N  +  +   +   K L +L+   N
Sbjct: 147 NTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTN 201

Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
            +     L       LT +   +N L+  +   +  L  L+     +N L+ +    +  
Sbjct: 202 NITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL---DVST 252

Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
           LS L  L+     L      ++ + T L   +        +    + + T L LL+    
Sbjct: 253 LSKLTTLHCIQTDLLEI---DLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAA 307

Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNLSG--KVNVPKLGTFIISVNNISESIPPEIGDSPK 353
            ++            +  + LN   L+     +  KL +      +I +     +G  P 
Sbjct: 308 GIT---ELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDF--SSVGKIPA 362

Query: 354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
           L     +    +      L        +  +L    G
Sbjct: 363 LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 7e-20
 Identities = 60/406 (14%), Positives = 129/406 (31%), Gaps = 50/406 (12%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
            N       + ++     +    L  L  L    + +     +E                
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---------------- 61

Query: 91  FVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS 150
            +  L      +N++     L L    +L+ +    N+ +    L +  L+ L  L   +
Sbjct: 62  KLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDT 115

Query: 151 NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILG 210
           N  +      +     L  L+ + N L     +   + + LT +    N     L   + 
Sbjct: 116 NKLT---KLDVSQNPLLTYLNCARNTL---TEIDVSHNTQLTELDCHLNKKITKLD--VT 167

Query: 211 NLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT 270
               L+ L    N+++ +    +     L  L    N +      ++     L+ L+  +
Sbjct: 168 PQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS 221

Query: 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKL 330
           N L+ +    +  LT L   +   N L+     +   LT++      Q +L         
Sbjct: 222 NKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH---CIQTDLLEIDLTHNT 275

Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
                      +    ++  + +L +LD  +  I     + L +   L  L LN  +L+ 
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE 332

Query: 391 GMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
              L++    +L+ L      ++     S+G +  L     +  Q 
Sbjct: 333 ---LDVSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 42/256 (16%), Positives = 82/256 (32%), Gaps = 39/256 (15%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             +    L  L+ SFN +  +    +     L  L+  +N ++    L++    QL  L 
Sbjct: 165 DVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLD 218

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
              N+L     +++  L+               L  F  + N L     L +  L+ L+T
Sbjct: 219 CSSNKLTE---IDVTPLT--------------QLTYFDCSVNPL---TELDVSTLSKLTT 258

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           +   Q        + L + + L             +   + +   L  LD     +    
Sbjct: 259 LHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI---T 310

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
            L       L  + L N  L+  L   + +   L +L      +     SS+G + +L  
Sbjct: 311 ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNN 365

Query: 242 LYLYNNGLYSFVPEEI 257
            +       +   E +
Sbjct: 366 NFEAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 41/247 (16%), Positives = 79/247 (31%), Gaps = 28/247 (11%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            +    L  L+ S N L  I    +  L+ L Y D   N L+    L++  L++L  L+ 
Sbjct: 208 LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHC 261

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVC--------NLANFYLNNNSLFNSIPLVLG 114
               L     +++   + +          +          L         +     L L 
Sbjct: 262 IQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE---LDLS 315

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
               L  + L+  + +    L + + + L  L   +        S +G + +L     +E
Sbjct: 316 QNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAE 370

Query: 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSG---SLPPILGNLKSLSALGLHINQLSGVIPS 231
            Q I     +  N S    +S       G   ++ P  G +   +   +    LS   P+
Sbjct: 371 GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430

Query: 232 SIGNLSS 238
                +S
Sbjct: 431 VTYTFTS 437

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 56/228 (24%), Positives = 81/228 (35%), Gaps = 50/228 (21%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           +PP +    +   L L  N L       +    +L  L  D  +L               
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--------------- 67

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN 142
                                     +  V G L  L T+DLS NQ   S+PL    L  
Sbjct: 68  ------------------------TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA 101

Query: 143 LDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNS 200
           L  L +  N  + S+P   +  L  L +L L  N+L  ++P         L  +SL NN+
Sbjct: 102 LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNN 159

Query: 201 LSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L+  LP  +L  L++L  L L  N L   IP        L   +L+ N
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 4e-17
 Identities = 54/253 (21%), Positives = 89/253 (35%), Gaps = 54/253 (21%)

Query: 184 SFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
               ++S   ++    +L+ +LPP +  +   L    L  N L     +++   + L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQL 60

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
            L    L     +    L  L  L+L  N L   +P     L  L +L++  N L+    
Sbjct: 61  NLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLSS 361
            + + L  ++ + L  N L                     ++PP +    PKL+ L L++
Sbjct: 118 GALRGLGELQELYLKGNELK--------------------TLPPGLLTPTPKLEKLSLAN 157

Query: 362 NNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIG 421
           NN                     L +L  G+   L  L  L  L L  N L  +IPK   
Sbjct: 158 NN---------------------LTELPAGL---LNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 422 NLLRLCYLDLSNN 434
               L +  L  N
Sbjct: 193 GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 12/205 (5%)

Query: 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222
            + S L+++  +  L  ++P         T++ L  N L       L     L+ L L  
Sbjct: 8   KVASHLEVNCDKRNL-TALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
            +L+ +     G L  L  L L +N L S +P   + L +L+ L++  N L+ +   ++ 
Sbjct: 65  AELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-----VNVPKLGTFIISV 337
            L  L  L +  N L    P        +E++ L  NNL+         +  L T ++  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 338 NNISESIPPEIGDSPKLQVLDLSSN 362
           N++  +IP     S  L    L  N
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 6e-15
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 24/197 (12%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                 L+LS N+L+      +   + L  L+L   +L+ +     G L  L  L    N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHN 87

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDL 124
           QL  S+PL    L                L    ++ N L  S+PL  L  L  L  + L
Sbjct: 88  QLQ-SLPLLGQTLP--------------ALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131

Query: 125 SQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIP 182
             N+   ++P  L      L+KL L +N+ +  +P+ ++  L++L  L L EN L  +IP
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIP 188

Query: 183 LSFGNLSSLTLMSLFNN 199
             F     L    L  N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 29/203 (14%)

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
            ++S   +      L + +P ++      + L L  N L      ++   T L  LN+  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKL 354
             L+  +      L  +  + L+ N L                     S+P      P L
Sbjct: 65  AELTK-LQ-VDGTLPVLGTLDLSHNQLQ--------------------SLPLLGQTLPAL 102

Query: 355 QVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413
            VLD+S N +   +P+     L  L +L L  N+L    P  L    +L+ L L+ N L 
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL- 160

Query: 414 SSIPKSI-GNLLRLCYLDLSNNQ 435
           + +P  +   L  L  L L  N 
Sbjct: 161 TELPAGLLNGLENLDTLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 50/177 (28%), Positives = 64/177 (36%), Gaps = 24/177 (13%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
               +  L  LNL    L  +     G L  L  LDL  NQL   +PL    L  L +L 
Sbjct: 50  TLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSL 119
              N+L  S+PL     L                L   YL  N L  ++P  +L     L
Sbjct: 107 VSFNRLT-SLPLGALRGLG--------------ELQELYLKGNEL-KTLPPGLLTPTPKL 150

Query: 120 STMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
             + L+ N  +  +P  L   L NLD L L  NS   +IP        L    L  N
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 21/233 (9%)

Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKS 214
            IP  +    S   LDLS N L      SF +   L ++ L    +  ++      +L  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           LS L L  N +  +   +   LSSL+ L      L S     I +L +L EL +  N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 275 GVIPHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333
                    NLT L  L++  N +        + L  +  + L+ +              
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-------------- 183

Query: 334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN 386
            +S+N ++  I P      +L+ L L +N +         +L SL K+ L+ N
Sbjct: 184 -LSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.1 bits (206), Expect = 5e-18
 Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 52/250 (20%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
            + + LDL  N L  +         +L++L     ++  +I                   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE------------------ 68

Query: 91  FVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLY 149
                                   +L+ LST+ L+ N    S+ L     LS+L KL   
Sbjct: 69  -------------------DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 150 SNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLS--FGNLSSLTLMSLFNNSLSGSLP 206
             + + S+ +  IG+LK+L +L+++ N  I S  L   F NL++L  + L +N +  S+ 
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165

Query: 207 P----ILGNLKSLSA-LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLT 261
                +L  +  L+  L L +N ++  I         L+ L L  N L S        LT
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 262 SLSELELCTN 271
           SL ++ L TN
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 54/244 (22%), Positives = 84/244 (34%), Gaps = 48/244 (19%)

Query: 11  HLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGS 70
           +L+LSFN L  +      +   LQ LDL   ++  +       L+ L  L    N +  S
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 71  IPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFS 130
           + L                                          L+SL  +   +   +
Sbjct: 91  LALGA-------------------------------------FSGLSSLQKLVAVETNLA 113

Query: 131 GSIPLSLGNLSNLDKLYLYSNSFSGSIPS--IIGNLKSLLQLDLSENQLIGSIPL-SFGN 187
                 +G+L  L +L +  N    S        NL +L  LDLS N+ I SI       
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 171

Query: 188 LSSLTLM----SLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
           L  + L+     L  N ++  + P       L  L L  NQL  V       L+SL+ ++
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

Query: 244 LYNN 247
           L+ N
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 25/226 (11%)

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
           S   L L  N L  +   S  +   L+ L L    + +      + L+ LS L L  N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333
             +   +   L+ L  L   E +L+        +L +++ + +  N +    +      F
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---SFKLPEYF 145

Query: 334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ----LGKLFSLN-KLILNLNQL 388
                           +   L+ LDLSSN I   I       L ++  LN  L L+LN +
Sbjct: 146 S---------------NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 389 SGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
           +  +       I L+ L L TN+LKS        L  L  + L  N
Sbjct: 190 NF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 8e-15
 Identities = 53/207 (25%), Positives = 74/207 (35%), Gaps = 28/207 (13%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           +F SFP L  L+LS   +   I      +LS+L  L L  N +  +       L+ L+ L
Sbjct: 47  SFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 61  YFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL--VLGNLN 117
                 L  S+     G L                L    + +N +  S  L     NL 
Sbjct: 106 VAVETNLA-SLENFPIGHLK--------------TLKELNVAHNLI-QSFKLPEYFSNLT 149

Query: 118 SLSTMDLSQNQFSGSIPL-SLGNLSNLD----KLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           +L  +DLS N+   SI    L  L  +      L L  N  +  I         L +L L
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNN 199
             NQL       F  L+SL  + L  N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 29/213 (13%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
           IP ++    S + L L  N L             L  L+L    +  +   +  +L+ L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
            L +  N +      +F  L+S+++++  + NL+                    S+    
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA--------------------SLENFP 119

Query: 349 GDSP-KLQVLDLSSNNI-VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQY-- 404
                 L+ L+++ N I   ++P     L +L  L L+ N++      +L  L ++    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 405 --LDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
             LDLS N +   I       +RL  L L  NQ
Sbjct: 180 LSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQ 211

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 22/133 (16%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI 59
           F       L  LN++ N++     P+   NL+NL++LDL SN++  +   ++  L+Q+ +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 60  ----LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVC-NLANFYLNNNSLFNSIPLVLG 114
               L   +N ++  I                   F    L    L+ N L +    +  
Sbjct: 178 LNLSLDLSLNPMN-FIQ---------------PGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 115 NLNSLSTMDLSQN 127
            L SL  + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 46/221 (20%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
           ++ + LDL SN+LS +       L +LR+LY + N+L  ++P                  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP------------------ 77

Query: 91  FVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLY 149
                                +   L +L T+ ++ N+   ++P+ +   L NL +L L 
Sbjct: 78  -------------------AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 150 SNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPP 207
            N    S+P  +  +L  L  L L  N+L  S+P   F  L+SL  + L+NN L   +P 
Sbjct: 118 RNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174

Query: 208 -ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
                L  L  L L  NQL  V   +  +L  L+ L L  N
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           L+L  N L  +       L+ L+ L L  N+L  +       L  L  L+   N+L  ++
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-AL 100

Query: 72  PLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQF 129
           P+ +  QL               NLA   L+ N L  S+P  V  +L  L+ + L  N+ 
Sbjct: 101 PIGVFDQLV--------------NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 130 SGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL 188
             S+P  +   L++L +L LY+N            L  L  L L  NQL      +F +L
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 189 SSLTLMSLFNN 199
             L ++ L  N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 59/208 (28%), Positives = 83/208 (39%), Gaps = 25/208 (12%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
           IPS+I   +  + L L +N L S   +    LT L  L L  N L  +       L  L 
Sbjct: 31  IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
            L + +N L       F  L ++  + L++N L                     S+PP +
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK--------------------SLPPRV 128

Query: 349 GDS-PKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD 406
            DS  KL  L L  N +   +P  +  KL SL +L L  NQL          L EL+ L 
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 407 LSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
           L  N+LK     +  +L +L  L L  N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 47/199 (23%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248
           +    + L +N LS         L  L  L L+ N+L  +       L +L  L++ +N 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL 308
           L +        L +L+EL L  N L  + P    +LT L  L++  N L       F  L
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156

Query: 309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNNIVGE 367
           TS++ + L  N L                      +P    D   +L+ L L +N +   
Sbjct: 157 TSLKELRLYNNQLK--------------------RVPEGAFDKLTELKTLKLDNNQLKRV 196

Query: 368 IPVQLGKLFSLNKLILNLN 386
                  L  L  L L  N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 32/198 (16%)

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
              +  L + +P  I       +L+L +N LS +   +   LT L LL + +N L     
Sbjct: 22  DCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78

Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP-KLQVLDLSS 361
             FK L ++E + +  N L                     ++P  + D    L  L L  
Sbjct: 79  GIFKELKNLETLWVTDNKLQ--------------------ALPIGVFDQLVNLAELRLDR 118

Query: 362 NNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELG---SLIELQYLDLSTNKLKSSIP 417
           N +   +P ++   L  L  L L  N+L     L  G    L  L+ L L  N+LK    
Sbjct: 119 NQLK-SLPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLTSLKELRLYNNQLKRVPE 174

Query: 418 KSIGNLLRLCYLDLSNNQ 435
            +   L  L  L L NNQ
Sbjct: 175 GAFDKLTELKTLKLDNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG---SL 399
           +IP  I      + LDL SN +         +L  L  L LN N+L     L  G    L
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKEL 84

Query: 400 IELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQF 436
             L+ L ++ NKL++ +P  +   L+ L  L L  NQ 
Sbjct: 85  KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQL 121

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
            F S   L +L+L +N L   +P  +   L++L+ L L +NQL  V       L +L+ L
Sbjct: 128 VFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 61  YFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVC 93
             D NQL   +P      L  + +L L  N + C
Sbjct: 187 KLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 57/298 (19%), Positives = 113/298 (37%), Gaps = 32/298 (10%)

Query: 29  NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88
            L+N   +  G + ++  +      L+ +  L      +     ++              
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQ-------------- 60

Query: 89  NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYL 148
             ++ NL    L +N + +  P  L NL  ++ ++LS N       ++   L ++  L L
Sbjct: 61  --YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDL 114

Query: 149 YSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPI 208
            S   +   P  +  L +L  L L  NQ+    PL+   L++L  +S+ N  +S  L P 
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS-DLTP- 168

Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L NL  L+ L    N++S +  S + +L +L  ++L NN +       +   ++L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTL 224

Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN 326
               ++        NL    ++         P   S     +   +  N  +    V+
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 57/282 (20%), Positives = 112/282 (39%), Gaps = 21/282 (7%)

Query: 137 LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL 196
              L+N  K+    ++ + ++     +L  +  L       + +I      L++L  + L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLEL 70

Query: 197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEE 256
            +N ++  L P L NL  ++ L L  N L  V  S+I  L S++ L L +  +    P  
Sbjct: 71  KDNQIT-DLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 257 IRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 316
           +  L++L  L L  N ++ + P  +  LT L  L++    +S   P    NL+ +  +  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 317 NQNN---LSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLG 373
           + N    +S   ++P L    +  N IS+  P  + ++  L ++ L++  I  +      
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 374 KLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSS 415
            L   N +           P  +         +L+ N     
Sbjct: 239 NLVVPNVVKGPSGAPIA--PATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 52/273 (19%), Positives = 111/273 (40%), Gaps = 37/273 (13%)

Query: 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222
            L + +++   ++ +  ++  +  +L  +T +S F   ++ ++   +  L +L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
           NQ++ +  + + NL+ +  L L  N L +     I  L S+  L+L +  ++ V P  + 
Sbjct: 73  NQITDL--APLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE 342
            L+ L +L +  N ++   P     LT+++ + +    +S                    
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-------------------- 164

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
            + P + +  KL  L    N I    P  L  L +L ++ L  NQ+S   PL   +   L
Sbjct: 165 DLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNL 219

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
             + L+   + +       NL+    +   +  
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 71/326 (21%), Positives = 119/326 (36%), Gaps = 57/326 (17%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            +    +  L+     +  I    +  L+NL  L+L  NQ++ + PL+  +L ++  L  
Sbjct: 37  QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLK--NLTKITELEL 92

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
             N L     +                                          L S+ T+
Sbjct: 93  SGNPLKNVSAIA----------------------------------------GLQSIKTL 112

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
           DL+  Q +   PL+   LSNL  LYL  N  +   P  +  L +L  L +   Q+    P
Sbjct: 113 DLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
           L+  NLS LT +   +N +S  + P L +L +L  + L  NQ+S V  S + N S+L  +
Sbjct: 169 LA--NLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDV--SPLANTSNLFIV 222

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
            L N  + +        L   + ++      + + P +I +       N+  N  S    
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKG--PSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVP 328
            S+                SG V  P
Sbjct: 281 VSY-TFNQSVTFKNTTVPFSGTVTQP 305

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 30/246 (12%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
                 +L+ L L  N +  + P  + NL+ +  L+L  N L  V  +    L  ++ L 
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLD 113

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
               Q+    PL    LS              NL   YL+ N + N  P  L  L +L  
Sbjct: 114 LTSTQITDVTPLA--GLS--------------NLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           + +   Q S   PL+  NLS L  L    N  S   P  + +L +L+++ L  NQ+    
Sbjct: 156 LSIGNAQVSDLTPLA--NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
           PL+  N S+L +++L N +++        NL   + +         + P++I +  +  +
Sbjct: 212 PLA--NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYAS 267

Query: 242 LYLYNN 247
             L  N
Sbjct: 268 PNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 25/203 (12%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
            A +    +  L+L+   +  + P  +  LSNLQ L L  NQ++ + PL    L  L+ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYL 156

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
                Q+    PL    LS               L     ++N + +  P  L +L +L 
Sbjct: 157 SIGNAQVSDLTPLA--NLS--------------KLTTLKADDNKISDISP--LASLPNLI 198

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
            + L  NQ S   PL+  N SNL  + L + + +        NL     +       I  
Sbjct: 199 EVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 181 IPLSF-GNLSSLTLMSLFNNSLS 202
             +S  G  +S  L     + ++
Sbjct: 257 ATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 24/184 (13%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             +   +L  L L  N +  I P  +  L+NLQYL +G+ Q+S + PL   +L++L  L 
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLK 179

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
            D N++    PL    L               NL   +L NN + +  P  L N ++L  
Sbjct: 180 ADDNKISDISPLA--SLP--------------NLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           + L+    +        NL   + +   S +     P+ I +  +    +L+ N      
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWNLTSFIN 279

Query: 182 PLSF 185
            +S+
Sbjct: 280 NVSY 283

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 47/261 (18%), Positives = 92/261 (35%), Gaps = 33/261 (12%)

Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKS 214
            IPS +   ++ ++L     +L      +F     L  + +  N +   +   +  NL  
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 215 LSALGL-HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN-H 272
           L  + +   N L  + P +  NL +L+ L + N G+         +      L++  N +
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 273 LSGVIPHSIGNLTGLL-LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLG 331
           +  +  +S   L+    +L + +N +      +F      E  L + NNL          
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE--------- 191

Query: 332 TFIISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL-ILNLNQLS 389
                       +P ++   +    +LD+S   I     +    L +L KL   +   L 
Sbjct: 192 -----------ELPNDVFHGASGPVILDISRTRIH---SLPSYGLENLKKLRARSTYNLK 237

Query: 390 GGMPLELGSLIELQYLDLSTN 410
               LE   L+ L    L+  
Sbjct: 238 KLPTLE--KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.3 bits (193), Expect = 4e-16
 Identities = 41/249 (16%), Positives = 74/249 (29%), Gaps = 22/249 (8%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI-GQLSLI 81
           IP  +    N   L     +L  +          L  +    N +   I  ++   L  +
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 82  NVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLS 141
           + + +                N+L    P    NL +L  + +S         +   +  
Sbjct: 82  HEIRI-------------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 142 NLDKLYLYSNSFSGSIPS-IIGNLKSLLQ-LDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199
               L +  N    +I       L      L L++N +      +F       L    NN
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 200 SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRY 259
           +L      +         L +   ++  +    + NL  LRA   YN      +P  +  
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLP-TLEK 244

Query: 260 LTSLSELEL 268
           L +L E  L
Sbjct: 245 LVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 47/249 (18%), Positives = 83/249 (33%), Gaps = 28/249 (11%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRILYF-D 63
             + + L      L  I         +L+ +++  N +  VI  ++  +L +L  +    
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 64  VNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
            N L   I  E    L               NL    ++N  + +   +   +      +
Sbjct: 89  ANNLL-YINPEAFQNLP--------------NLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 123 DLSQNQFSGSIPLSL--GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
           D+  N    +I  +   G       L+L  N     I +   N   L +L+LS+N  +  
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE 192

Query: 181 IP-LSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
           +P   F   S   ++ +    +  SLP   L NLK L A       L  +       L +
Sbjct: 193 LPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST--YNLKKLPTLE--KLVA 247

Query: 239 LRALYLYNN 247
           L    L   
Sbjct: 248 LMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 33/200 (16%), Positives = 53/200 (26%), Gaps = 17/200 (8%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
            FS+ P L  + +        I P+   NL NLQYL + +  +  +  +   H  Q  +L
Sbjct: 74  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
               N            +  I   +             +LN N +               
Sbjct: 134 DIQDN----------INIHTIERNSFVG--LSFESVILWLNKNGIQEIHNSAFNGTQLDE 181

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
                 N             S    L +            + NLK L        + +  
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP- 240

Query: 181 IPLSFGNLSSLTLMSLFNNS 200
              +   L +L   SL   S
Sbjct: 241 ---TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 14/209 (6%)

Query: 238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL 297
           S R      + + + +P ++    +  EL      L  +   +      L  + + +N +
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 298 SGPIPKS-FKNLTSVERVLLNQNN----LSGKV--NVPKLGTFIISVNNISESIPPEI-G 349
              I    F NL  +  + + + N    ++ +   N+P L   +IS   I   +P     
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 350 DSPKLQVLDLSSNNIVGEIPVQL--GKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL 407
            S +  +LD+  N  +  I      G  F    L LN N +              +    
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
             N L+               LD+S  + 
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRI 214

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNN 199
             + ++ L  N+     P      K L ++DLS NQ+   +   +F  L SL  + L+ N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGN 90

Query: 200 SLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIR 258
            ++  LP  +   L SL  L L+ N+++ +   +  +L +L  L LY+N L +       
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 259 YLTSLSELELCTN 271
            L ++  + L  N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 189 SSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
            ++T + L  N++   +PP      K L  + L  NQ+S + P +   L SL +L LY N
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90

Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
            +          L SL  L L  N ++ +   +  +L  L LL++ +N L      +F  
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 308 LTSVERVLLNQN 319
           L +++ + L QN
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 21/146 (14%)

Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
           + L  N +  + P +      LR + L NN +    P+  + L SL+ L L  N ++ + 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISV 337
                 L  L LL +  N ++     +F++L ++  + L  N L                
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ--------------- 141

Query: 338 NNISESIPPEIGDS-PKLQVLDLSSN 362
                +I          +Q + L+ N
Sbjct: 142 -----TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           + L  N +  I P        L+ +DL +NQ+S + P     L  L  L    N++   +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 72  PLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQF 129
           P  +   L               +L    LN N + N + +    +L++L+ + L  N+ 
Sbjct: 96  PKSLFEGLF--------------SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 130 SGSIPLSLGNLSNLDKLYLYSNSF 153
                 +   L  +  ++L  N F
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 20/148 (13%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI-GQLSLINVLALCHN 89
             +  + L  N +  + P       +LR +    NQ+   +  +    L           
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR---------- 80

Query: 90  YFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLY 147
               +L +  L  N +   +P  +   L SL  + L+ N+ +  + + +  +L NL+ L 
Sbjct: 81  ----SLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
           LY N            L+++  + L++N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 23/152 (15%)

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320
            +++E+ L  N +  + P +      L  +++  N +S   P +F+ L S+  ++L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 321 LSGKVNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQL-GKLFSL 378
           ++                     +P  + +    LQ+L L++N I   + V     L +L
Sbjct: 92  IT--------------------ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNL 130

Query: 379 NKLILNLNQLSGGMPLELGSLIELQYLDLSTN 410
           N L L  N+L          L  +Q + L+ N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIIS 336
           IP ++      + L    N +    P +F     + R+ L+ N +S              
Sbjct: 26  IPTNLPETITEIRLEQ--NTIKVIPPGAFSPYKKLRRIDLSNNQIS-------------- 69

Query: 337 VNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPL 394
                  + P+       L  L L  N I  E+P  L   LFSL  L+LN N+++     
Sbjct: 70  ------ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVD 122

Query: 395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
               L  L  L L  NKL++    +   L  +  + L+ N F
Sbjct: 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 14/128 (10%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           AFS +  L  ++LS N +  + P     L +L  L L  N+++ +       L  L++L 
Sbjct: 51  AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
            + N+++  + ++  Q  L             NL    L +N L          L ++ T
Sbjct: 111 LNANKIN-CLRVDAFQ-DLH------------NLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 122 MDLSQNQF 129
           M L+QN F
Sbjct: 157 MHLAQNPF 164

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
                +L +   +     +   L+++D++   ++    S+  I   L ++  L L  N+L
Sbjct: 20  ETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIK-SVQGI-QYLPNVRYLALGGNKL 75

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNL 236
              I  +   L++LT + L  N L  SLP  +   L +L  L L  NQL  +       L
Sbjct: 76  -HDIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-GNLTGLLLLNMCEN 295
           ++L  L L +N L S        LT+L+EL+L  N L   +P  +   LT L  L + +N
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191

Query: 296 HLSGPIPK-SFKNLTSVERVLLNQN 319
            L   +P   F  LTS++ + L+ N
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 30/204 (14%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIG---HLNQLR 58
             +    +  +  + + +  +    I  L N++YL LG N+L      +I     L  L 
Sbjct: 36  TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----DISALKELTNLT 88

Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNS 118
            L    NQL  S+P  +                + NL    L  N L +    V   L +
Sbjct: 89  YLILTGNQL-QSLPNGVFDK-------------LTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 119 LSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQ 176
           L+ ++L+ NQ   S+P  +   L+NL +L L  N    S+P  +   L  L  L L +NQ
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192

Query: 177 LIGSIPL-SFGNLSSLTLMSLFNN 199
           L  S+P   F  L+SL  + L +N
Sbjct: 193 L-KSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 41/226 (18%)

Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
             L    ++  +  +   L+S+  +   N+ + S     I+YL ++  L L  N L    
Sbjct: 24  ANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLH--- 76

Query: 278 PHSIG---NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFI 334
              I     LT L  L +  N L       F  LT+++ ++L +N L             
Sbjct: 77  --DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL------------- 121

Query: 335 ISVNNISESIPPEIGDSP-KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP 393
                  +S+P  + D    L  L+L+ N +         KL +L +L L+ NQL     
Sbjct: 122 -------QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--- 171

Query: 394 LELG---SLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQ 435
           L  G    L +L+ L L  N+LK S+P  +   L  L Y+ L +N 
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 37/212 (17%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
            P      +      L    +      +   L S+ ++    + +  V    I  L  + 
Sbjct: 13  FPDDA--FAETIKANLKKKSVTD-AVTQNE-LNSIDQIIANNSDIKSVQG--IQYLPNVR 66

Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
            L +  N L      + K LT++  ++L  N L                     S+P  +
Sbjct: 67  YLALGGNKLHDI--SALKELTNLTYLILTGNQLQ--------------------SLPNGV 104

Query: 349 GDSP-KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG---SLIELQY 404
            D    L+ L L  N +         KL +L  L L  NQL     L  G    L  L  
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS---LPKGVFDKLTNLTE 161

Query: 405 LDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQ 435
           LDLS N+L+ S+P+ +   L +L  L L  NQ
Sbjct: 162 LDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 10/185 (5%)

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
              +     L Q+  +    ++   +++L  + L + + +      I    ++  L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 234
                  P+S   LS+L  + +    ++    P L  L SL+ L +  +     I + I 
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
            L  + ++ L  NG  + +   ++ L  L  L +  + +       I +   L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 295 NHLSG 299
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 6e-14
 Identities = 31/200 (15%), Positives = 72/200 (36%), Gaps = 24/200 (12%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
           S+F   ++  L  +            +++L Y+ L +  ++ +  +E  + + ++ L  +
Sbjct: 20  STFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTIN 74

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMD 123
                   P+    LS              NL    +    + +     L  L SL+ +D
Sbjct: 75  NIHATNYNPIS--GLS--------------NLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
           +S +    SI   +  L  ++ + L  N     I   +  L  L  L++  + +     +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGI 177

Query: 184 SFGNLSSLTLMSLFNNSLSG 203
              +   L  +  F+ ++ G
Sbjct: 178 E--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 9e-14
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 24/200 (12%)

Query: 29  NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88
                    LG +  +    +    +N L  +      +     +E              
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIE-------------- 63

Query: 89  NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYL 148
            Y   N+ +  +NN    N  P+    L++L  + +     +     +L  L++L  L +
Sbjct: 64  -YAH-NIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 149 YSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPI 208
             ++   SI + I  L  +  +DLS N  I  I      L  L  +++  + +       
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG-- 176

Query: 209 LGNLKSLSALGLHINQLSGV 228
           + +   L+ L      + G 
Sbjct: 177 IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 29/204 (14%)

Query: 211 NLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT 270
             K+     L  +  + +   +   ++SL  + L N  +       I Y  ++ +L +  
Sbjct: 21  TFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKL 330
            H +   P  I  L+ L  L +    ++     +   LT                    L
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLT-------------------SL 114

Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
               IS +   +SI  +I   PK+  +DLS N  + +I   L  L  L  L +  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD 173

Query: 391 GMPLELGSLIELQYLDLSTNKLKS 414
              +E     +L  L   +  +  
Sbjct: 174 YRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 22/179 (12%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            +    L ++ L+   +  +    I    N++ L + +   +   P+    L+ L  L  
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRI 95

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
               +       +  L+              +L    +++++  +SI   +  L  ++++
Sbjct: 96  MGKDVTSDKIPNLSGLT--------------SLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           DLS N     I   L  L  L  L +  +         I +   L QL       IG  
Sbjct: 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT-IGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 15/200 (7%)

Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV 228
           Q  L  +Q   +IP S     +     L  +S +      + +L  ++   +++  L+G 
Sbjct: 5   QTGLKASQDNVNIPDS--TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG- 61

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
               I    +++ L + N    ++    I  L++L  L +    ++     ++  LT L 
Sbjct: 62  ----IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV----NVPKLGTFIISVNNISESI 344
           LL++  +     I      L  V  + L+ N     +     +P+L +  I  + + +  
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR 175

Query: 345 PPEIGDSPKLQVLDLSSNNI 364
              I D PKL  L   S  I
Sbjct: 176 G--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 25/153 (16%), Positives = 58/153 (37%), Gaps = 3/153 (1%)

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE 342
                L   + ++  +        +LT +    +N  +L+G      +    I+  + + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
             P  I     L+ L +   ++  +    L  L SL  L ++ +     +  ++ +L ++
Sbjct: 81  YNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
             +DLS N   + I   +  L  L  L++  + 
Sbjct: 139 NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 306 KNLTSVERVLLNQNNLS--GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
               +    LL Q++ +   +  +  L    ++  N+++     I  +  ++ L +++ +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 364 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL 423
                P  +  L +L +L +    ++      L  L  L  LD+S +    SI   I  L
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 424 LRLCYLDLSNNQ 435
            ++  +DLS N 
Sbjct: 136 PKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 17/130 (13%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             S   +L  L +    +     P +  L++L  LD+  +     I  +I  L ++  + 
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
              N         I  +  +  L          L +  +  + + +     + +   L+ 
Sbjct: 143 LSYNGA-------ITDIMPLKTLP--------ELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

Query: 122 MDLSQNQFSG 131
           +        G
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 328 PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ 387
                ++  +   S +          L  + L++ N+       +    ++  L +N   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 388 LSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVELE 445
            +   P+    L  L+ L +    + S    ++  L  L  LD+S++     IL ++ 
Sbjct: 78  ATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNS 200
            ++ +LYL  N F+  +P  + N K L  +DLS N++      SF N++ L  + L  N 
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 201 LSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLY 250
           L   +PP     LKSL  L LH N +S V   +  +LS+L  L +  N LY
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 99  YLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP 158
           YL+ N     +P  L N   L+ +DLS N+ S     S  N++ L  L L  N     IP
Sbjct: 37  YLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIP 94

Query: 159 S-IIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNN 199
                 LKSL  L L  N +   +P  +F +LS+L+ +++  N
Sbjct: 95  PRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG---SL 399
            +P  I     +  L L  N     +P +L     L  + L+ N++S    L      ++
Sbjct: 24  VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST---LSNQSFSNM 77

Query: 400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
            +L  L LS N+L+   P++   L  L  L L  N 
Sbjct: 78  TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 25/124 (20%)

Query: 196 LFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE 255
           L  N  +  +P  L N K L+ + L  N++S +   S  N++ L  L L  N L    P 
Sbjct: 38  LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96

Query: 256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVL 315
               L SL  L L  N +S V+P                          F +L+++  + 
Sbjct: 97  TFDGLKSLRLLSLHGNDIS-VVPEGA-----------------------FNDLSALSHLA 132

Query: 316 LNQN 319
           +  N
Sbjct: 133 IGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             S++ HL  ++LS N +  +      N++ L  L L  N+L  + P     L  LR+L 
Sbjct: 49  ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108

Query: 62  FDVNQLHGSIP 72
              N +   +P
Sbjct: 109 LHGNDIS-VVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 41/141 (29%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           L L  N    ++P ++ N  +L  +DL +N++S +      ++ QL  L    N+L   I
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 72  PLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSG 131
           P                                     P     L SL  + L  N  S 
Sbjct: 94  P-------------------------------------PRTFDGLKSLRLLSLHGNDIS- 115

Query: 132 SIPL-SLGNLSNLDKLYLYSN 151
            +P  +  +LS L  L + +N
Sbjct: 116 VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG 397
            N    +P E+ +   L ++DLS+N I          +  L  LIL+ N+L    P    
Sbjct: 40  GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99

Query: 398 SLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQF 436
            L  L+ L L  N +   +P+    +L  L +L +  N  
Sbjct: 100 GLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           LYL  N   + VP+E+     L+ ++L  N +S +   S  N+T LL L +  N L    
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 302 PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333
           P++F  L S+  + L+ N++S    VP+ G F
Sbjct: 95  PRTFDGLKSLRLLSLHGNDIS---VVPE-GAF 122

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.2 bits (180), Expect = 8e-15
 Identities = 49/153 (32%), Positives = 67/153 (43%), Gaps = 4/153 (2%)

Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSG 227
           +LDL    L      +F  L+ LT ++L  N L  +L   +  +L  L  LGL  NQL+ 
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-GNLTG 286
           +      +L+ L  LYL  N L S        LT L EL L TN L   IP      LT 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319
           L  L++  N L      +F  L  ++ + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 24/181 (13%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI-GQLSLI 81
           +P  I   ++ + LDL S  L+ +       L +L  L  D NQL  ++   +   L+  
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLT-- 83

Query: 82  NVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSL-GNL 140
                        L    L NN L +    V  +L  L  + L  NQ   S+P  +   L
Sbjct: 84  ------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRL 130

Query: 141 SNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFN 198
           + L +L L +N    SIP+     L +L  L LS NQL  S+P  +F  L  L  ++LF 
Sbjct: 131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188

Query: 199 N 199
           N
Sbjct: 189 N 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 41/150 (27%), Positives = 58/150 (38%), Gaps = 2/150 (1%)

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
           DL     +     +   L+ L  L L  N        +  +L  L  L L+ NQL     
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
             F +L+ L  + L  N L  SLP  +   L  L  L L+ NQL  +   +   L++L+ 
Sbjct: 101 GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTN 271
           L L  N L S        L  L  + L  N
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 47/154 (30%), Positives = 62/154 (40%), Gaps = 22/154 (14%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F     L  LNL +N L  +      +L+ L  L L +NQL+ +      HL QL  LY
Sbjct: 54  TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYF--VCNLANFYLNNNSLFNSIPL-VLGNLNS 118
              NQL  S+P                  F  +  L    LN N L  SIP      L +
Sbjct: 114 LGGNQLK-SLP---------------SGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTN 156

Query: 119 LSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSN 151
           L T+ LS NQ   S+P  +   L  L  + L+ N
Sbjct: 157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 54/213 (25%), Positives = 79/213 (37%), Gaps = 55/213 (25%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
           +PS I   +    L L + GL +      R LT L+ L L  N L   +   +       
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGV------- 78

Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
                           F +LT +  + L  N L+                    S+P  +
Sbjct: 79  ----------------FDDLTELGTLGLANNQLA--------------------SLPLGV 102

Query: 349 GDSP-KLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELG---SLIELQ 403
            D   +L  L L  N +   +P  +  +L  L +L LN NQL     +  G    L  LQ
Sbjct: 103 FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS---IPAGAFDKLTNLQ 158

Query: 404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            L LSTN+L+S    +   L +L  + L  NQF
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 1e-14
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 12/154 (7%)

Query: 123 DLSQNQFSGSIP--LSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIG 179
           DLS N  S  +    +   L+NL  L L  N  +  I S     + +L  LDLS N L  
Sbjct: 45  DLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL-H 101

Query: 180 SIP-LSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIP---SSIG 234
           ++    F +L +L ++ L+NN +   +      ++  L  L L  NQ+S           
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
            L  L  L L +N L      +++ L +  +  L
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 189 SSLTLMSLFNNSLSGSLPP--ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN 246
           S   L+ L +N+LS  L        L +L +L L  N L+ +   +   + +LR L L +
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 247 NGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
           N L++        L +L  L L  NH+  V  ++  ++  L  L + +N +S    +  K
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 307 N---LTSVERVLLNQNNLS 322
           +   L  +  + L+ N L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 30/198 (15%)

Query: 246 NNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-GNLTGLLLLNMCENHLSGPIPKS 304
              L   VP+ +   +  + L+L  N+LS +        LT L  L +  NHL+    ++
Sbjct: 27  KQQL-PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83

Query: 305 FKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNN 363
           F  + ++  + L+ N+L                     ++   +      L+VL L +N+
Sbjct: 84  FVPVPNLRYLDLSSNHLH--------------------TLDEFLFSDLQALEVLLLYNNH 123

Query: 364 IVGEIPVQLGKLFSLNKLILNLNQLS---GGMPLELGSLIELQYLDLSTNKLKSSIPKSI 420
           IV         +  L KL L+ NQ+S     +  +   L +L  LDLS+NKLK      +
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 421 GNL--LRLCYLDLSNNQF 436
             L       L L NN  
Sbjct: 184 QKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 41/199 (20%), Positives = 61/199 (30%), Gaps = 46/199 (23%)

Query: 31  SNLQYLDLGSNQLSGVIPLEI-GHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
           S    LDL  N LS +        L  L  L    N L+  I                  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FIS----------------- 80

Query: 90  YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
                                     + +L  +DLS N           +L  L+ L LY
Sbjct: 81  --------------------SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 150 SNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIP----LSFGNLSSLTLMSLFNNSLSGS 204
           +N     +      ++  L +L LS+NQ+    P         L  L L+ L +N L   
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 205 LPPILGNLKSLSALGLHIN 223
               L  L +    GL+++
Sbjct: 179 PLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 38/161 (23%), Positives = 57/161 (35%), Gaps = 25/161 (15%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI 59
           +  +   +L  L LS N L   I  +    + NL+YLDL SN L  +       L  L +
Sbjct: 58  WTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116

Query: 60  LYFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP----LVLG 114
           L    N +   +       ++               L   YL+ N + +  P        
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMA--------------QLQKLYLSQNQI-SRFPVELIKDGN 160

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDK--LYLYSNSF 153
            L  L  +DLS N+        L  L    K  LYL++N  
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 23/155 (14%)

Query: 304 SFKNLTSV--------ERVLLNQNNLSG------KVNVPKLGTFIISVNNISESIPPEIG 349
           S + L +V          + L+ NNLS          +  L + ++S N+++  I  E  
Sbjct: 26  SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAF 84

Query: 350 DS-PKLQVLDLSSNNIVGEIPVQ-LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL 407
              P L+ LDLSSN++   +       L +L  L+L  N +          + +LQ L L
Sbjct: 85  VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143

Query: 408 STNKLKSSIP----KSIGNLLRLCYLDLSNNQFGH 438
           S N++ S  P    K    L +L  LDLS+N+   
Sbjct: 144 SQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIP---LEIGHLNQLR 58
            FS    L  L L  N +  +      +++ LQ L L  NQ+S        +   L +L 
Sbjct: 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166

Query: 59  ILYFDVNQLHGSIPLEIGQLSLI--NVLALCHNYFVCN 94
           +L    N+L      ++ +L     N L L +N   C+
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 17/229 (7%)

Query: 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222
                ++ +L +  +  ++  +   L+S+  +   N+ +  S+   +  L +++ L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
           N+L+ +    + NL +L  L+L  N +       ++ L  L  L L  N +S +    + 
Sbjct: 78  NKLTDI--KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LV 131

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN---LSGKVNVPKLGTFIISVNN 339
           +L  L  L +  N ++         LT ++ + L  N    +     + KL    +S N+
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189

Query: 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
           IS+     +     L VL+L S   + +       L   N +      L
Sbjct: 190 ISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 49/240 (20%), Positives = 89/240 (37%), Gaps = 30/240 (12%)

Query: 29  NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88
             +     +L    ++  +      LN +  +  + +            +  +  +    
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNS-----------DIKSVQGIQYLP 68

Query: 89  NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYL 148
                N+   +LN N L +  P  L NL +L  + L +N+      L   +L  L  L L
Sbjct: 69  -----NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSL 119

Query: 149 YSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPI 208
             N  S  I   + +L  L  L L  N++     LS   L+ L  +SL +N +S  + P 
Sbjct: 120 EHNGIS-DING-LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP- 173

Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
           L  L  L  L L  N +S +   ++  L +L  L L++    +        L   + ++ 
Sbjct: 174 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 17/231 (7%)

Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
                      L    ++  +      L+S+  +   N+ + S   + I+YL ++++L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL 75

Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN---LSGKV 325
             N L+ + P  + NL  L  L + EN +      S K+L  ++ + L  N    ++G V
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
           ++P+L +  +  N I++     +    KL  L L  N I   +P  L  L  L  L L+ 
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 386 NQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           N +S    L    L  L  L+L + +  +       NL+    +  ++   
Sbjct: 188 NHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 52/278 (18%), Positives = 106/278 (38%), Gaps = 35/278 (12%)

Query: 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
                     +L +   + ++  +   L+++D++   ++    S+  I   L ++ +L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGI-QYLPNVTKLFL 75

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232
           + N+L    PL+  NL +L  + L  N +   L   L +LK L +L L  N +S +  + 
Sbjct: 76  NGNKLTDIKPLA--NLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDI--NG 129

Query: 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNM 292
           + +L  L +LYL NN +       +  LT L  L L  N +S ++P  +  LT L  L +
Sbjct: 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185

Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP 352
            +NH+S                     +L     +  L    +              +  
Sbjct: 186 SKNHIS---------------------DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
               +  +  ++V    +     +    +  +L + + 
Sbjct: 225 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 50/245 (20%), Positives = 90/245 (36%), Gaps = 30/245 (12%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            +    +  +  + + +  +    I  L N+  L L  N+L+ + PL   +L  L  L+ 
Sbjct: 42  QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFL 97

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
           D N           ++  ++ L          L +  L +N + +     L +L  L ++
Sbjct: 98  DEN-----------KVKDLSSLKDLK-----KLKSLSLEHNGISDING--LVHLPQLESL 139

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
            L  N+ +    LS   L+ LD L L  N  S  I   +  L  L  L LS+N +     
Sbjct: 140 YLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA 195

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
           L+   L +L ++ LF+            NL   + +      L  V P  I +       
Sbjct: 196 LA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKP 251

Query: 243 YLYNN 247
            +  +
Sbjct: 252 NVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 19/209 (9%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
               P++  L L+ N L  I P  + NL NL +L L  N++  +  L+   L +L+ L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSL 119

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVC--------NLANFYLNNNSLFNSIPLVLG 114
           + N +     L    L  +  L L +N             L    L +N + + +PL   
Sbjct: 120 EHNGISDINGLV--HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL--A 175

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
            L  L  + LS+N  S    L+   L NLD L L+S        +   NL     +  ++
Sbjct: 176 GLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 175 NQLIGSIPLSF-GNLSSLTLMSLFNNSLS 202
             L+    +S  G+     +        +
Sbjct: 234 GSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.7 bits (171), Expect = 6e-14
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 141 SNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199
               +L L +N F+    + I   L  L +++ S N++      +F   S +  + L +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 200 SLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIR 258
            L  ++   +   L+SL  L L  N+++ V   S   LSS+R L LY+N + +  P    
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 259 YLTSLSELELCTN 271
            L SLS L L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 99  YLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSI 157
            LNNN         +   L  L  ++ S N+ +     +    S ++++ L SN      
Sbjct: 38  RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97

Query: 158 PSIIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSL 215
             +   L+SL  L L  N++   +   SF  LSS+ L+SL++N ++ ++ P     L SL
Sbjct: 98  HKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSL 155

Query: 216 SALGLHINQL 225
           S L L  N  
Sbjct: 156 STLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 189 SSLTLMSLFNNSLSGSLPP--ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN 246
                + L NN  +  L    I   L  L  +    N+++ +   +    S +  + L +
Sbjct: 32  QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 247 NGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
           N L +   +  + L SL  L L +N ++ V   S   L+ + LL++ +N ++   P +F 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 307 NLTSVERVLLNQN 319
            L S+  + L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 22/147 (14%)

Query: 218 LGLHINQLSGVIPSSI-GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV 276
           L L+ N+ + +  + I   L  LR +   NN +           + ++E+ L +N L  V
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIIS 336
                  L  L  L +  N ++     SF  L+SV  + L  N ++              
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-------------- 142

Query: 337 VNNISESIPPEIGDS-PKLQVLDLSSN 362
                 ++ P   D+   L  L+L +N
Sbjct: 143 ------TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 12  LNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGS 70
           L L+ N    +    I   L  L+ ++  +N+++ +        + +  +    N+L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 71  IPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQ 128
           +  ++   L               +L    L +N +   +       L+S+  + L  NQ
Sbjct: 96  VQHKMFKGLE--------------SLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 129 FSGSIPL-SLGNLSNLDKLYLYSNSF 153
            + ++   +   L +L  L L +N F
Sbjct: 141 IT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 304 SFKNLTSV--------ERVLLNQNNLS------GKVNVPKLGTFIISVNNISESIPPEIG 349
           S + L  +          + LN N  +          +P+L     S N I+  I     
Sbjct: 19  SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAF 77

Query: 350 DS-PKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL 407
           +    +  + L+SN +   +  ++   L SL  L+L  N+++         L  ++ L L
Sbjct: 78  EGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136

Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
             N++ +  P +   L  L  L+L  N F
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
           AF     +  + L+ N L  +       L +L+ L L SN+++ V       L+ +R+L 
Sbjct: 76  AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135

Query: 62  FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCN 94
              NQ+  ++       L  ++ L L  N F CN
Sbjct: 136 LYDNQIT-TVAPGAFDTLHSLSTLNLLANPFNCN 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
            L  NQ +   P    +L NL +LYL SN        +  +L  L  LDL  NQL   +P
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TVLP 104

Query: 183 LS-FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
            + F  L  L  + +  N L+  LP  +  L  L+ L L  NQL  +   +   LSSL  
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 242 LYLYNN 247
            YL+ N
Sbjct: 164 AYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 43/178 (24%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           +P  I   +N Q L L  NQ++ + P     L  L+ LY   NQL  ++P          
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP---------- 80

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSL-GNLS 141
                                        V  +L  L+ +DL  NQ +  +P ++   L 
Sbjct: 81  ---------------------------VGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLV 112

Query: 142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199
           +L +L++  N  +  +P  I  L  L  L L +NQL      +F  LSSLT   LF N
Sbjct: 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 196 LFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE 255
           L +N ++   P +  +L +L  L L  NQL  +      +L+ L  L L  N L      
Sbjct: 47  LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106

Query: 256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVL 315
               L  L EL +C N L+  +P  I  LT L  L + +N L      +F  L+S+    
Sbjct: 107 VFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165

Query: 316 LNQN 319
           L  N
Sbjct: 166 LFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 17/141 (12%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           L L  N +  + P    +L NL+ L LGSNQL  +       L QL +L    NQL   +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 72  PLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFS 130
           P  +  +L               +L   ++  N L   +P  +  L  L+ + L QNQ  
Sbjct: 104 PSAVFDRLV--------------HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK 148

Query: 131 GSIPLSLGNLSNLDKLYLYSN 151
                +   LS+L   YL+ N
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 338 NNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLE 395
           +N    + P + DS   L+ L L SN +   +PV +   L  L  L L  NQL+    L 
Sbjct: 49  DNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV---LP 104

Query: 396 LG---SLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
                 L+ L+ L +  NKL   +P+ I  L  L +L L  NQ
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 24/160 (15%)

Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIIS 336
           +P  I     +L L+   N ++   P  F +L +++ + L  N L               
Sbjct: 34  VPAGIPTNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSNQLG-------------- 77

Query: 337 VNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE 395
                 ++P  + DS  +L VLDL +N +         +L  L +L +  N+L+  +P  
Sbjct: 78  ------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRG 130

Query: 396 LGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
           +  L  L +L L  N+LKS    +   L  L +  L  N 
Sbjct: 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 57/278 (20%), Positives = 94/278 (33%), Gaps = 27/278 (9%)

Query: 135 LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP---LSFGNLSSL 191
           L  G  S    L            + I    SL +L +   ++   I    L    +S L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN------LSSLRALYLY 245
             ++L N  ++G+ PP L          L++  +S     +            L+ L + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 246 NNGLYSFVPEEIRYLTSLSELELCTNHLSG-------VIPHSIGNLTGLLLLNMCENHLS 298
                +F  E++R   +LS L+L  N   G       + P     L  L L N      S
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 299 GPIPKSFKNLTSVERVLLNQNNLSG------KVNVPKLGTFIISVNNISESIPPEIGDSP 352
           G           ++ + L+ N+L             +L +  +S   +   +P  +    
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PA 274

Query: 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
           KL VLDLS N +    P    +L  +  L L  N    
Sbjct: 275 KLSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 58/297 (19%), Positives = 95/297 (31%), Gaps = 19/297 (6%)

Query: 13  NLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIP 72
           + +FN L        G   +L+YL    +  + +       +  L +    V        
Sbjct: 25  SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQF-TDIIKSLSLKRLTVRAARIPSR 83

Query: 73  LEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGS 132
           +  G L ++ +  L        L N  +   +    +     +LN L+  ++S       
Sbjct: 84  ILFGALRVLGISGLQEL----TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139

Query: 133 IP-LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL-------S 184
           +  L       L  L +            +    +L  LDLS+N  +G   L        
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI-GNLSSLRALY 243
           F  L  L L +    + SG    +      L  L L  N L     +      S L +L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP 300
           L   GL   VP+ +     LS L+L  N L      S   L  +  L++  N     
Sbjct: 260 LSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 5e-12
 Identities = 48/259 (18%), Positives = 68/259 (26%), Gaps = 49/259 (18%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNL--SNLQYLDLGSNQLSGVIPLEIGHLNQLR 58
                   L  L L    + G  PP +      +L  L+L +   +              
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------------- 135

Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNS 118
                                    LA    +    L    +      N     +    +
Sbjct: 136 ---------------------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174

Query: 119 LSTMDLSQNQFSGSIPL-------SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171
           LST+DLS N   G   L           L  L        + SG   ++      L  LD
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 172 LSENQLIGSIP-LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
           LS N L  +    S    S L  ++L    L      +   L  L    L  N+L     
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDRN-- 289

Query: 231 SSIGNLSSLRALYLYNNGL 249
            S   L  +  L L  N  
Sbjct: 290 PSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 40/201 (19%), Positives = 56/201 (27%), Gaps = 37/201 (18%)

Query: 5   SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV 64
             P L  L+++          Q+     L  LDL  N   G   L               
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL--------------- 191

Query: 65  NQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDL 124
                   L   +   + VLAL +               +       +      L  +DL
Sbjct: 192 -----ISALCPLKFPTLQVLALRNA-----------GMETPSGVCSALAAARVQLQGLDL 235

Query: 125 SQNQFSGSIP-LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
           S N    +    S    S L+ L L           +   L     LDLS N+L    P 
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSV---LDLSYNRL-DRNP- 290

Query: 184 SFGNLSSLTLMSLFNNSLSGS 204
           S   L  +  +SL  N    S
Sbjct: 291 SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 46/225 (20%), Positives = 75/225 (33%), Gaps = 22/225 (9%)

Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHS---IGNLTGLLLL 290
           G  S    L   +         +I    SL  L +    +   I      +  ++GL  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFI-----------ISVNN 339
            +    ++G  P      T  +  +LN  N+S       L               I+  +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEI-------PVQLGKLFSLNKLILNLNQLSGGM 392
                  ++   P L  LDLS N  +GE        P++   L  L      +   SG  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 393 PLELGSLIELQYLDLSTNKLKSSIPKSIGNLL-RLCYLDLSNNQF 436
                + ++LQ LDLS N L+ +      +   +L  L+LS    
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 52/280 (18%)

Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
           L ++D   +    +  +   +L  LT+ +    S        +  +  L  L L   +++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 227 GVIPSSIGNLS--SLRALYLYNN---GLYSFVPEEIRYL-TSLSELELCTNHLSGVIPHS 280
           G  P  +   +   L  L L N       +++ E  ++L   L  L +   H        
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 281 IGNLTGLLLLNMCENHLSGPIPKS----FKNLTSVERVLLNQNNLSGKVNVPKLGTFIIS 336
           +     L  L++ +N   G              +++ + L    +               
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM--------------- 213

Query: 337 VNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL 396
               S           +LQ LDLS N++                                
Sbjct: 214 -ETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------------------APSC 249

Query: 397 GSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
               +L  L+LS   L   +PK +   L    LDLS N+ 
Sbjct: 250 DWPSQLNSLNLSFTGL-KQVPKGLPAKLS--VLDLSYNRL 286

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           +DL  N            L++L +LYL  N        +   L SL  L+LS NQL  S+
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSL 91

Query: 182 PLS-FGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
           P   F  L+ L  ++L  N L  SLP  +   L  L  L L+ NQL  V       L+SL
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 240 RALYLYNN 247
           + ++L++N
Sbjct: 151 QYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 9/141 (6%)

Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKS 214
           S+P+ I        LDL  N L       F  L+SLT + L  N L  SLP  +   L S
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
           L+ L L  NQL  +       L+ L+ L L  N L S        LT L +L L  N L 
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

Query: 275 GVIPH----SIGNLTGLLLLN 291
            V P      + +L  + L +
Sbjct: 138 SV-PDGVFDRLTSLQYIWLHD 157

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           L+L  N L  +       L++L  L LG N+L  +       L  L  L    NQL  S+
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 72  PLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQF 129
           P  +  +L+               L    LN N L  S+P  V   L  L  + L QNQ 
Sbjct: 92  PNGVFDKLT--------------QLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 130 SGSIPL-SLGNLSNLDKLYLYSN 151
             S+P      L++L  ++L+ N
Sbjct: 137 K-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 46/180 (25%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           +P  I   +   YLDL +N L  +       L  L  LY   N+L  S+P          
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP---------- 68

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSL-GNLS 141
                                        V   L SL+ ++LS NQ   S+P  +   L+
Sbjct: 69  ---------------------------NGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLT 100

Query: 142 NLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNN 199
            L +L L +N    S+P  +   L  L  L L +NQL  S+P   F  L+SL  + L +N
Sbjct: 101 QLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 46/165 (27%), Positives = 65/165 (39%), Gaps = 31/165 (18%)

Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIIS 336
           +P  I   T  L L    N L       F  LTS+ ++ L  N L               
Sbjct: 22  VPTGIPAQTTYLDLET--NSLKSLPNGVFDELTSLTQLYLGGNKLQ-------------- 65

Query: 337 VNNISESIPPEIGDSP-KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE 395
                 S+P  + +    L  L+LS+N +         KL  L +L LN NQL     L 
Sbjct: 66  ------SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS---LP 116

Query: 396 LG---SLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQF 436
            G    L +L+ L L  N+LK S+P  +   L  L Y+ L +N +
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPW 160

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 144 DKLYLYSNSFSGSIPS--IIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL 201
            +L L  N     I S  + G L  L++L+L  NQL G  P +F   S +  + L  N +
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 202 SGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
              +   +   L  L  L L+ NQ+S V+P S  +L+SL +L L +N
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELG---S 398
            IP +I        L L+ N +       L G+L  L KL L  NQL+G   +E      
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---IEPNAFEG 76

Query: 399 LIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
              +Q L L  NK+K    K    L +L  L+L +NQ
Sbjct: 77  ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 196 LFNNSLSGSLPP--ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV 253
           L +N L   +    + G L  L  L L  NQL+G+ P++    S ++ L L  N +    
Sbjct: 36  LNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94

Query: 254 PEEIRYLTSLSELELCTNHLSGVIPH----SIGNLTGLLLLN 291
            +    L  L  L L  N +S V        + +LT L L +
Sbjct: 95  NKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
           F   PHLV L L  N L GI P      S++Q L LG N++  +       L+QL+ L  
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109

Query: 63  DVNQLHGSIP 72
             NQ+   + 
Sbjct: 110 YDNQIS-CVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 25/126 (19%)

Query: 34  QYLDLGSNQLSGVIPLEI-GHLNQLRILYFDVNQLHGSIPLEIG---QLSLINVLALCHN 89
             L L  N+L  +    + G L  L  L    NQL G   +E       S          
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---IEPNAFEGAS---------- 78

Query: 90  YFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLY 147
               ++    L  N +   I   +   L+ L T++L  NQ S  +   S  +L++L  L 
Sbjct: 79  ----HIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLN 132

Query: 148 LYSNSF 153
           L SN F
Sbjct: 133 LASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 22/123 (17%)

Query: 242 LYLYNNGLYSFVPEEI-RYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP 300
           L L +N L     + +   L  L +LEL  N L+G+ P++    + +  L + EN +   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 301 IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS-PKLQVLDL 359
             K F  L  ++ + L  N +S                     + P   +    L  L+L
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQIS--------------------CVMPGSFEHLNSLTSLNL 133

Query: 360 SSN 362
           +SN
Sbjct: 134 ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 338 NNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLE 395
           N +       +    P L  L+L  N +   I          + +L L  N++     + 
Sbjct: 39  NELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKE---IS 94

Query: 396 LG---SLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQF 436
                 L +L+ L+L  N++   +      +L  L  L+L++N F
Sbjct: 95  NKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNN 199
           S+  +L L SN        +   L  L +L LS+NQ+  S+P   F  L+ LT++ L  N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHEN 86

Query: 200 SLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
            L  SLP  +   L  L  L L  NQL  V       L+SL+ ++L+ N
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG---SL 399
           S+P  I  S     L+L SN +         KL  L KL L+ NQ+     L  G    L
Sbjct: 21  SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS---LPDGVFDKL 75

Query: 400 IELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQ 435
            +L  L L  NKL+ S+P  +   L +L  L L  NQ
Sbjct: 76  TKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQ 111

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
           L L  N+L  +       L+ L  L L  N + S        LT L+ L L  N L   +
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 278 PHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319
           P+ +   LT L  L +  N L       F  LTS++++ L+ N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 20/124 (16%)

Query: 31  SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI-GQLSLINVLALCHN 89
           S+   L+L SN+L  +       L QL  L    NQ+  S+P  +  +L+          
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT---------- 76

Query: 90  YFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLY 147
                L   YL+ N L  S+P  V   L  L  + L  NQ   S+P      L++L K++
Sbjct: 77  ----KLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIW 130

Query: 148 LYSN 151
           L++N
Sbjct: 131 LHTN 134

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.2 bits (158), Expect = 2e-11
 Identities = 36/208 (17%), Positives = 65/208 (31%), Gaps = 5/208 (2%)

Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289
                    L    L           E+     L ELE         I   +  L  LL 
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIG 349
                 + S            ++ +       +  + +      ++ + +   ++   + 
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE 460

Query: 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409
               +  LDLS N +   +P  L  L  L  L  + N L       + +L  LQ L L  
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCN 517

Query: 410 NKLKS-SIPKSIGNLLRLCYLDLSNNQF 436
           N+L+  +  + + +  RL  L+L  N  
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 48/333 (14%), Positives = 106/333 (31%), Gaps = 22/333 (6%)

Query: 53  HLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLV 112
             + L  ++    +   S+           +  L        L+  +   +       + 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
           L +L + S  D         I     +      L      +           + L + +L
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW----CRDSATDEQLFRCEL 356

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALG---LHINQLSGVI 229
           S  +    +     +   L  +   N     ++  ++  L  L        + + L  V 
Sbjct: 357 SVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415

Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289
           P     L  LR+ +L  N               +  L L    L+ +    +  L  +  
Sbjct: 416 PMRAAYLDDLRSKFLLEN------SVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTH 467

Query: 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKVNVPKLGTFIISVNNISE-SIP 345
           L++  N L   +P +   L  +E +  + N   N+ G  N+P+L   ++  N + + +  
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI 526

Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSL 378
             +   P+L +L+L  N++  +      +L  +
Sbjct: 527 QPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 21/164 (12%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                +L+   +             ++++ L L    L+ +  LE   L  +  L    N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHN 473

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLS 125
           +L  ++P  +  L  + VL    N  + N+                 + NL  L  + L 
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNA-LENVDG---------------VANLPRLQELLLC 516

Query: 126 QNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL 168
            N+    +    L +   L  L L  NS       I   L  +L
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
                 + HL+LS N L  + PP +  L  L+ L    N L  V    + +L +L+ L  
Sbjct: 459 LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV--DGVANLPRLQELLL 515

Query: 63  DVNQLHG-SIPLEIGQLSLINVLALCHN 89
             N+L   +    +     + +L L  N
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 22/224 (9%)

Query: 30  LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
             + Q L L    L  +      +L  +  +Y  ++            L  +   +  + 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID----------VTLQQLESHSFYNL 79

Query: 90  YFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGSIP--LSLGNLSNLDKL 146
                + +  + N      I    L  L  L  + +         P    + +      L
Sbjct: 80  S---KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFIL 135

Query: 147 YLYSNSFSGSIP--SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS 204
            +  N +  SIP  +  G     L L L  N    S+     N + L  + L  N     
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 205 LPP-ILGNLKS-LSALGLHINQLSGVIPSSIGNLSSLRALYLYN 246
           +     G + S  S L +    ++ +    + +L  L A   + 
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 24/223 (10%)

Query: 7   PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSN-QLSGVIPLEIGHLNQLRILYFDVN 65
           P    L L    L  I      NL N+  + +  +  L  +      +L+++  +     
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP--LVLGNLNSLSTMD 123
           +           L+ I+  AL        L    + N  L    P    + + +    ++
Sbjct: 91  R----------NLTYIDPDALKELP---LLKFLGIFNTGL-KMFPDLTKVYSTDIFFILE 136

Query: 124 LSQNQFSGSIPL-SLGNLSN-LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           ++ N +  SIP+ +   L N    L LY+N F+ S+     N   L  + L++N+ +  I
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 182 P-LSFGNL-SSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLH 221
              +FG + S  +L+ +   S++ +LP   L +LK L A    
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 49/252 (19%)

Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHIN-QLSGVIPSSIGNLSSLRALYLYN 246
             S   + L    L         NL ++S + + I+  L  +   S  NLS +  + + N
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 247 NGLYSFVPEEI-RYLTSLSELELCTNHLSGVIPH--SIGNLTGLLLLNMCENHLSGPIPK 303
               +++  +  + L  L  L +    L  + P    + +     +L + +N     IP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 304 -SFKNLTSVERVL-LNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS 361
            +F+ L +    L L  N  +                    S+     +  KL  + L+ 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT--------------------SVQGYAFNGTKLDAVYLNK 188

Query: 362 NNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIG 421
           N  +  I                +                   LD+S   + +   K + 
Sbjct: 189 NKYLTVID---------KDAFGGVYSG-------------PSLLDVSQTSVTALPSKGLE 226

Query: 422 NLLRLCYLDLSN 433
           +L  L   +   
Sbjct: 227 HLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 284 LTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------NVPKLGTFIISV 337
                 L + E HL      +F NL ++ R+ ++ +    ++      N+ K+    I  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 338 NNISESIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL-------NLNQLS 389
                 I P+   + P L+ L + +  +    P  L K++S +   +        +  + 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP-DLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 390 GGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
                 L +      L L  N   +S+     N  +L  + L+ N+
Sbjct: 148 VNAFQGLCNE--TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK 190

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 63/382 (16%), Positives = 117/382 (30%), Gaps = 60/382 (15%)

Query: 118 SLSTMDLSQNQFS-GSIPLSLGNLSNLDKLYLYSNSFS----GSIPSIIGNLKSLLQLDL 172
            + ++D+   + S       L  L     + L     +      I S +    +L +L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 173 SENQL--IGSIPLSFG---NLSSLTLMSLFNNSLS----GSLPPILGNLKSLSALGLHIN 223
             N+L  +G   +  G       +  +SL N  L+    G L   L  L +L  L L  N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 224 QLSGVIPSSIG-----NLSSLRALYLYNNGLYS----FVPEEIRYLTSLSELELCTNHLS 274
            L       +          L  L L    L +     +   +R      EL +  N ++
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 275 GVIPHSIG-----NLTGLLLLNMCENHLS----GPIPKSFKNLTSVERVLLNQNNLSG-- 323
                 +      +   L  L +    ++      +     +  S+  + L  N L    
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 324 --------KVNVPKLGTFIISVNNISE----SIPPEIGDSPKLQVLDLSSNNIVGEIPVQ 371
                        +L T  I    I+      +   +     L+ L L+ N +  E    
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 372 LGKLF-----SLNKLILNLNQLSGGMPLELGSLIE----LQYLDLSTNKLKSSIPKSIGN 422
           L +        L  L +     +        S++     L  L +S N+L+ +  + +  
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363

Query: 423 LLR-----LCYLDLSNNQFGHK 439
            L      L  L L++      
Sbjct: 364 GLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 88/465 (18%), Positives = 143/465 (30%), Gaps = 92/465 (19%)

Query: 30  LSNLQYLDLGSNQLS----GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85
           L   Q + L    L+      I   +     L  L    N+L        G   ++  L 
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV-----GVHCVLQGLQ 81

Query: 86  LCHNYFVCNLANFYLNNNSL----FNSIPLVLGNLNSLSTMDLSQNQF--SGSIPLSLGN 139
                  C +    L N  L       +   L  L +L  + LS N    +G   L  G 
Sbjct: 82  TPS----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 140 LSN---LDKLYLYSNSFS----GSIPSIIGNLKSLLQLDLSENQLI--GSIPLSFG---N 187
           L     L+KL L   S S      + S++       +L +S N +   G   L  G   +
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 188 LSSLTLMSLFNNSLS----GSLPPILGNLKSLSALGLHINQL--SGVI---PSSIGNLSS 238
              L  + L +  ++      L  I+ +  SL  L L  N+L   G+    P  +   S 
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 239 LRALYLYNNGL----YSFVPEEIRYLTSLSELELCTNHL--SGVIPHSIG---NLTGLLL 289
           LR L+++  G+       +   +R   SL EL L  N L   G              L  
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 290 LNMCENHLSG----PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
           L +     +                +  + ++ N L     V +L   +           
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-EDAGVRELCQGLGQPG------- 369

Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYL 405
                   L+VL L+  ++       L      N                      L+ L
Sbjct: 370 ------SVLRVLWLADCDVSDSSCSSLAATLLANH--------------------SLREL 403

Query: 406 DLSTNKLKSSIPKSIGNLLR-----LCYLDLSNNQFGHKILVELE 445
           DLS N L  +    +   +R     L  L L +  +  ++   L+
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 87/435 (20%), Positives = 146/435 (33%), Gaps = 72/435 (16%)

Query: 1   FAFSSFPHLVHLNLSFNIL----FGIIPPQIGNLS-NLQYLDLGSNQLS----GVIPLEI 51
            A    P L  LNL  N L       +   +   S  +Q L L +  L+    GV+   +
Sbjct: 50  SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109

Query: 52  GHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSL----FN 107
             L  L+ L+   N L  +     G   L   L        C L    L   SL      
Sbjct: 110 RTLPTLQELHLSDNLLGDA-----GLQLLCEGLLDPQ----CRLEKLQLEYCSLSAASCE 160

Query: 108 SIPLVLGNLNSLSTMDLSQNQFS--GSIPLSLG---NLSNLDKLYLYSNSFS----GSIP 158
            +  VL        + +S N  +  G   L  G   +   L+ L L S   +      + 
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 159 SIIGNLKSLLQLDLSENQL--IGSIPLSFGNL---SSLTLMSLFNNSLS----GSLPPIL 209
            I+ +  SL +L L  N+L  +G   L  G L   S L  + ++   ++    G L  +L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 210 GNLKSLSALGLHINQLSGVIPSSIGNL-----SSLRALYLYNNGL----YSFVPEEIRYL 260
              +SL  L L  N+L       +          L +L++ +        S     +   
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 261 TSLSELELCTNHL--SGVIPHSIG---NLTGLLLLNMCENHLS----GPIPKSFKNLTSV 311
             L EL++  N L  +GV     G     + L +L + +  +S      +  +     S+
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 312 ERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ 371
             + L+ N L               +  + ES+         L+ L L       E+  +
Sbjct: 401 RELDLSNNCLGDA-----------GILQLVESVR---QPGCLLEQLVLYDIYWSEEMEDR 446

Query: 372 LGKLFSLNKLILNLN 386
           L  L      +  ++
Sbjct: 447 LQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 52/326 (15%), Positives = 102/326 (31%), Gaps = 51/326 (15%)

Query: 165 KSLLQLDLSENQLI-GSIPLSFGNLSSLTLMSLFNNSLS----GSLPPILGNLKSLSALG 219
             +  LD+   +L           L    ++ L +  L+      +   L    +L+ L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 220 LHINQLSGVIPSSIGNL-----SSLRALYLYNNGL----YSFVPEEIRYLTSLSELELCT 270
           L  N+L  V    +          ++ L L N  L       +   +R L +L EL L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 271 NHLSGVIPHSIG-----NLTGLLLLNMCENHLS----GPIPKSFKNLTSVERVLLNQNNL 321
           N L       +          L  L +    LS     P+    +     + + ++ N++
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 322 SG----------KVNVPKLGTFIISVNNISE----SIPPEIGDSPKLQVLDLSSNNIVGE 367
           +           K +  +L    +    ++      +   +     L+ L L SN +   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 368 -----IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE----LQYLDLSTNKLKSSIPK 418
                 P  L     L  L +    ++     +L  ++     L+ L L+ N+L     +
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 419 SIGNLLR-----LCYLDLSNNQFGHK 439
            +   L      L  L + +  F   
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAA 328

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 82/453 (18%), Positives = 139/453 (30%), Gaps = 153/453 (33%)

Query: 53  HLNQLR----ILYFDVNQLHGSIPLEIGQLSLINVLALCHNY-FVCNLAN--FYLNNNSL 105
            L +LR    +L      + G   L  G+  +   L +C +Y   C +    F+LN  + 
Sbjct: 143 ALLELRPAKNVL------IDG--VLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 106 FNSIPLVLGNLNSLST----MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSII 161
            NS   VL  L  L         S++  S +I L + ++    +  L S  +        
Sbjct: 193 -NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE------- 244

Query: 162 GNLKSLLQLD-LSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220
                LL L  +   +   +    F NLS   L++     +                   
Sbjct: 245 ---NCLLVLLNVQNAKAWNA----F-NLSCKILLTTRFKQV------------------- 277

Query: 221 HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHS 280
             + LS    + I    SL      ++   +  P+E       S L    +     +P  
Sbjct: 278 -TDFLSAATTTHI----SL------DHHSMTLTPDE-----VKSLLLKYLDCRPQDLPRE 321

Query: 281 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFI-ISVNN 339
           +   T    L++        I +S ++        L   +    VN  KL T I  S+N 
Sbjct: 322 V-LTTNPRRLSI--------IAESIRDG-------LATWDNWKHVNCDKLTTIIESSLNV 365

Query: 340 ISES-----------------IPPEIGDSPKLQVL--DLSSNNIVGEIPVQLGKLFSLNK 380
           +  +                 IP  +     L ++  D+  ++ V  +  +L K   + K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTIL-----LSLIWFDVIKSD-VMVVVNKLHKYSLVEK 419

Query: 381 -----------LILNLNQLSGGMPLEL-GSLIELQYL--------DLSTNKLKSSIPKSI 420
                      + L L          L  S+++  Y         DL    L       I
Sbjct: 420 QPKESTISIPSIYLELKVKLENEY-ALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 421 G------------NLLRLCYLDLSNNQF-GHKI 440
           G             L R+ +LD     F   KI
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFR---FLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 5e-09
 Identities = 57/324 (17%), Positives = 104/324 (32%), Gaps = 90/324 (27%)

Query: 141 SNLDKLYLYSNSFSG---SIPSIIGNLKS-LLQLDLSENQLI----GSIPLSFGNLSSLT 192
              D+LY  +  F+    S       L+  LL+L  ++N LI    G      G  + + 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----SGK-TWVA 167

Query: 193 LMSLFNNSLSGSLP-PI----LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L    +  +   +   I    L N  S   +   + +L   I  +  + S   +      
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR- 226

Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL-NMCE-NHLSGPIPKSF 305
                +  E+R L      E C                 LL+L N+            +F
Sbjct: 227 --IHSIQAELRRLLKSKPYENC-----------------LLVLLNVQNAKAW-----NAF 262

Query: 306 KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS---N 362
            NL+   ++LL          +    T  IS+++ S ++ P+       +V  L     +
Sbjct: 263 -NLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-------EVKSLLLKYLD 312

Query: 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI-EL---------QYLDLSTNKL 412
               ++P                 ++    P  L S+I E           +  ++ +KL
Sbjct: 313 CRPQDLP----------------REVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKL 355

Query: 413 KSSIPKSIGNL----LRLCYLDLS 432
            + I  S+  L     R  +  LS
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLS 379

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 64/358 (17%), Positives = 111/358 (31%), Gaps = 75/358 (20%)

Query: 113 LGNLNSLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNSFSG----SIPSIIGNL 164
           +    S+    L  +  +     S+   L    ++ ++ L  N+        +   I + 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 165 KSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQ 224
           K L   + S+             L  L                 L     L  + L  N 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQA--------------LLKCPKLHTVRLSDNA 105

Query: 225 LS--GVIP--SSIGNLSSLRALYLYNNGLYSFVPEEIRYL-TSLSELELCTNHLSGVIPH 279
                  P    +   + L  LYL+NNGL    P+    +  +L EL +           
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNKK-------- 154

Query: 280 SIGNLTGLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFII 335
              N   L  +    N L         K+F++   +  V + QN               I
Sbjct: 155 -AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG--------------I 199

Query: 336 SVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ-----LGKLFSLNKLILNLNQLSG 390
               I   +   +    +L+VLDL  N     +        L    +L +L LN   LS 
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 391 ------GMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR-----LCYLDLSNNQFG 437
                          I LQ L L  N+++    +++  ++      L +L+L+ N+F 
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 46/315 (14%), Positives = 93/315 (29%), Gaps = 53/315 (16%)

Query: 9   LVHLNLSFNIL----FGIIPPQIGNLSNLQYLDLGSNQLS--GVIPL--EIGHLNQLRIL 60
           +   +L  + +       +   +    +++ + L  N +       L   I     L I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSL----FNSIPLVLGNL 116
            F      G +  EI +   + + AL        L    L++N+        +   L   
Sbjct: 66  EFSDIFT-GRVKDEIPEALRLLLQALLKC---PKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 117 NSLSTMDLSQNQFS-------------GSIPLSLGNLSNLDKLYLYSNSFSG----SIPS 159
             L  + L  N                 ++     N   L  +    N            
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 160 IIGNLKSLLQLDLSENQL-----IGSIPLSFGNLSSLTLMSLFNNSLSG----SLPPILG 210
              + + L  + + +N +        +         L ++ L +N+ +     +L   L 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 211 NLKSLSALGLHINQLSGVIPSSIGNL------SSLRALYLYNN-----GLYSFVPEEIRY 259
           +  +L  LGL+   LS    +++ +         L+ L L  N      + +        
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 260 LTSLSELELCTNHLS 274
           +  L  LEL  N  S
Sbjct: 302 MPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 43/236 (18%)

Query: 238 SLRALYLYNNGL----YSFVPEEIRYLTSLSELELCTNHLSG----VIPHSIGNLTGLLL 289
           S+    L  + +       V   +    S+ E+ L  N +       +  +I +   L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNIS----ESIP 345
               +        +  + L  + + LL    L          T  +S N       E + 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH---------TVRLSDNAFGPTAQEPLI 115

Query: 346 PEIGDSPKLQVLDLSSNNI-------------VGEIPVQLGKLFSLNKLILNLNQL-SGG 391
             +     L+ L L +N +                +  +      L  +I   N+L +G 
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 392 MPL---ELGSLIELQYLDLSTNKLKSS-IPKSIGNLLRLC----YLDLSNNQFGHK 439
           M        S   L  + +  N ++   I   +   L  C     LDL +N F H 
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 42/257 (16%), Positives = 70/257 (27%), Gaps = 61/257 (23%)

Query: 2   AFSSFPHLVHLNLSFNIL--FGIIP--PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
           A    P L  + LS N        P    +   + L++L L +N L              
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG------------- 135

Query: 58  RILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFV----CNLANFYLNNNSLFN----SI 109
                                 +   L              L +     N L N      
Sbjct: 136 ----------------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 110 PLVLGNLNSLSTMDLSQNQF-----SGSIPLSLGNLSNLDKLYLYSNSFSG----SIPSI 160
                +   L T+ + QN          +   L     L  L L  N+F+     ++   
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 161 IGNLKSLLQLDLSENQL--IGSIP----LSFGNLSSLTLMSLFNNSLSGSLPPILG---- 210
           + +  +L +L L++  L   G+       S      L  + L  N +       L     
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 211 -NLKSLSALGLHINQLS 226
             +  L  L L+ N+ S
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 146 LYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL 205
           +     S + S+P+ I    +   L L +NQ+    P  F  L+ LT + L NN L+  L
Sbjct: 14  VDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VL 69

Query: 206 PP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           P  +   L  L+ L L+ NQL  +   +  NL SL  ++L NN
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 93  CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
           C+      +  SL  S+P   G   +   + L  NQ +   P     L+ L +L L +N 
Sbjct: 9   CSGTTVDCSGKSL-ASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65

Query: 153 FSGSIPS-IIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNN 199
            +  +P+ +   L  L QL L++NQL  SIP  +F NL SLT + L NN
Sbjct: 66  LT-VLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG---SL 399
           S+P  I  +   QVL L  N I    P    +L  L +L L+ NQL+    L  G    L
Sbjct: 23  SVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKL 77

Query: 400 IELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNN 434
            +L  L L+ N+LK SIP+    NL  L ++ L NN
Sbjct: 78  TQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 377 SLNKLILNLNQLSGGMPLELG---SLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLS 432
           +   L L  NQ++    LE G    L +L  LDL  N+L   +P  +   L +L  L L+
Sbjct: 31  TTQVLYLYDNQITK---LEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86

Query: 433 NNQ 435
           +NQ
Sbjct: 87  DNQ 89

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 9e-09
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPP-ILGNLK 213
                +   ++L +L +   Q +  + L     L  L  +++  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 249
            LS L L  N L  +   ++  L SL+ L L  N L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 132 SIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLSFGNLSS 190
                L    NL +LY+ +      +    +  L  L  L + ++ L    P +F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
           L+ ++L  N+L  SL        SL  L L  N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 8e-08
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 229 IPSSIGNLSSLRALYL-YNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
               +    +L  LY+     L      ++R L  L  L +  + L  V P +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321
             LN+  N L     K+ + L S++ ++L+ N L
Sbjct: 83  SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 8e-08
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIP-VQLGKLFSLNKLILNLNQLSGGMPLELGSLIE 401
                +  +  L  L + +   +  +    L  L  L  L +  + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 402 LQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           L  L+LS N L  S+       L L  L LS N  
Sbjct: 82  LSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQ-IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
                 +L  L +        +  + +  L  L+ L +  + L  V P       +L  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCN 94
               N L  S+  +  Q   +  L L  N   C+
Sbjct: 86  NLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 21/111 (18%)

Query: 253 VPEEIRYLTSLSELELCTN-HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV 311
               +    +L+EL +    HL  +    +  L  L  L + ++ L    P +F     +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 312 ERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
            R+ L+ N L                     S+  +      LQ L LS N
Sbjct: 83  SRLNLSFNALE--------------------SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 8e-07
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 102 NNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSI 160
                      L    +L+ + +   Q    + L  L  L  L  L +  +      P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 161 IGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL 201
                 L +L+LS N L      +   L SL  + L  N L
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS-SIGNLSSLRALYLYNNGLYSFVPEE 256
               +      L   ++L+ L +   Q    +    +  L  LR L +  +GL    P+ 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 257 IRYLTSLSELELCTNHLSGVIPHSIGNLT 285
             +   LS L L  N L  +   ++  L+
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------NVPKLGTFIISVNNISESIPP 346
           C    +           ++  + +        +       + +L    I  + +   + P
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAP 73

Query: 347 EIGDS-PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
           +     P+L  L+LS N +   +  +  +  SL +L+L+ N L
Sbjct: 74  DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 94  NLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
           NL   Y+ N      + L  L  L  L  + + ++      P +      L +L L  N+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 153 FSGSIPSIIGNLKSLLQLDLSENQL 177
                   +  L SL +L LS N L
Sbjct: 92  LESLSWKTVQGL-SLQELVLSGNPL 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKS 214
           S+P+ I       +L L+ NQ+    P  F +L +L  +   +N L+ ++P  +   L  
Sbjct: 26  SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L+ L L+ N L  +   +  NL SL  +YLYNN
Sbjct: 83  LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG---SL 399
           S+P  I      Q L L++N I    P     L +L +L  N N+L+    +  G    L
Sbjct: 26  SVPAGIPTD--KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKL 80

Query: 400 IELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNN 434
            +L  LDL+ N LK SIP+    NL  L ++ L NN
Sbjct: 81  TQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 380 KLILNLNQLSGGMPLELG---SLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQ 435
           +L LN NQ++    LE G    L+ LQ L  ++NKL  +IP  +   L +L  LDL++N 
Sbjct: 37  RLWLNNNQITK---LEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNH 92

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 26/107 (24%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
           +    +LNNN +    P V  +L +L  +  + N+ + +IP                   
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIP------------------- 73

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNN 199
                 +   L  L QLDL++N L  SIP  +F NL SLT + L+NN
Sbjct: 74  ----TGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 42/229 (18%), Positives = 79/229 (34%), Gaps = 23/229 (10%)

Query: 27  IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86
              L+N    +LG   ++ ++  +   L+ ++    D + +     ++    + +  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHL 70

Query: 87  CHNYFVC--------NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLG 138
            HN             L    +N N L N   +    L+ L    L  N+   +  L   
Sbjct: 71  SHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRDTDSLI-- 125

Query: 139 NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFN 198
           +L NL+ L + +N    SI   +G L  L  LDL  N++  +  L+   L  +  + L  
Sbjct: 126 HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTG 181

Query: 199 NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
                        L   + +     +   + P  I N  S     +   
Sbjct: 182 QKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 34/230 (14%)

Query: 159 SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL 218
                L + ++ +L +  +   +      LS +   +  N+++  SL   +    +L  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP 278
            L  NQ+S +  S + +L+ L  L +  N L +           LS L L  N L     
Sbjct: 69  HLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRDTDS 123

Query: 279 HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVN 338
             + +L  L +L++  N L                      ++     + KL    +  N
Sbjct: 124 --LIHLKNLEILSIRNNKLK---------------------SIVMLGFLSKLEVLDLHGN 160

Query: 339 NISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
            I+ +    +    K+  +DL+    V E      +L+  N +     + 
Sbjct: 161 EITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 40/199 (20%), Positives = 77/199 (38%), Gaps = 27/199 (13%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
                 + + N   + +  +    +   +NL+ L L  NQ+S + PL+   L +L  L  
Sbjct: 37  QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSPLK--DLTKLEELSV 92

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
           + N           +L  +N +          L+  +L+NN L ++    L +L +L  +
Sbjct: 93  NRN-----------RLKNLNGIPS------ACLSRLFLDNNELRDTDS--LIHLKNLEIL 133

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
            +  N+   SI   LG LS L+ L L+ N  +      +  LK +  +DL+  + +    
Sbjct: 134 SIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPV 189

Query: 183 LSFGNLSSLTLMSLFNNSL 201
                L     +   +   
Sbjct: 190 KYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 38/218 (17%), Positives = 83/218 (38%), Gaps = 16/218 (7%)

Query: 220 LHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPH 279
                ++ V P     L++     L    +   V    + L+ +       +++  +   
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG- 58

Query: 280 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG--KVNVPKLGTFIISV 337
            +   T L  L++  N +S   P   K+LT +E + +N+N L     +    L    +  
Sbjct: 59  -MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG 397
           N + +     +     L++L + +N +   +   LG L  L  L L+ N+++    L   
Sbjct: 116 NELRD--TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGLT-- 169

Query: 398 SLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
            L ++ ++DL+  K  +   K    L     +   + +
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 19/191 (9%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
              F +L  L+LS N +  + P  + +L+ L+ L +  N+L  +  +       L  L+ 
Sbjct: 59  MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFL 113

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNY--------FVCNLANFYLNNNSLFNSIPLVLG 114
           D N+L  +  L    L  + +L++ +N         F+  L    L+ N + N+    L 
Sbjct: 114 DNNELRDTDSLI--HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG--LT 169

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
            L  ++ +DL+  +           L   + +      +    P  I N  S +   +  
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLW 227

Query: 175 NQLIGSIPLSF 185
              + +  +S+
Sbjct: 228 ELPVYTDEVSY 238

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 19/164 (11%)

Query: 299 GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS--PKLQV 356
            P+  +   L ++ ++    N   GK   P L +  I    + +S+  +I  S  P L+ 
Sbjct: 165 SPVLDAMPLLNNL-KIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 357 LDLS--SNNIVGEIPVQL-------GKLFSLNKLILNLNQLSGGMPLELGS---LIELQY 404
           L L     +   +  + +        +  +L  L +   +    +         L +L+ 
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 405 LDLSTNKLKSS----IPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           +D+S   L       +   +  +  L ++++  N    ++  EL
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 135 LSLGNLSNLDKLYL-YSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTL 193
           L     + + +L L    S  G I  +     +L  L L     + S+  +   L  L  
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS-NLPKLPKLKK 75

Query: 194 MSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV-IPSSIGNLSSLRALYLYNN 247
           + L  N + G L  +   L +L+ L L  N+L  +     +  L  L++L L+N 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG 397
            +    I     +   L+ L L +  ++  +   L KL  L KL L+ N++ GG+ +   
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 398 SLIELQYLDLSTNKLKS-SIPKSIGNLLRLCYLDLSNN 434
            L  L +L+LS NKLK  S  + +  L  L  LDL N 
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 163 NLKSLLQLDLSENQL-IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221
              ++ +L L   +   G I        +L  +SL N  L  S+   L  L  L  L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELS 79

Query: 222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
            N++ G +      L +L  L L  N L       +  L  L  L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI--STLEPLKKLECLK 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411
            +L+ L   +  +   I   L KL  L KL L+ N++SGG+ +       L +L+LS NK
Sbjct: 42  EELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 412 LKS-SIPKSIGNLLRLCYLDLSNN 434
           +K  S  + +  L  L  LDL N 
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 163 NLKSLLQLDLSENQL-IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221
               + +L L  ++   G +         L  +S  N  L+ S+   L  L  L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
            N++SG +        +L  L L  N +       I  L  L  L+
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL--STIEPLKKLENLK 116

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 31/174 (17%)

Query: 9   LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
            V L+     +  +    +  L   ++L L +N +  +  L    +  LRIL    N + 
Sbjct: 27  KVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIK 83

Query: 69  GSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQ 128
                      + N+ A+        L   +++ N + +     +  L +L  + +S N+
Sbjct: 84  ----------KIENLDAVAD-----TLEELWISYNQIASLSG--IEKLVNLRVLYMSNNK 126

Query: 129 FSGSIPLS-LGNLSNLDKLYLYSNSFSGSIPS----------IIGNLKSLLQLD 171
            +    +  L  L  L+ L L  N                  ++  L +L +LD
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 145 KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS 204
           +L+         + + +  LK+   L LS N  I  I  S   + +L ++SL  N +   
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIK-K 84

Query: 205 LPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS 264
           +  +     +L  L +  NQ++ +  S I  L +LR LY+ NN + ++   EI  L +L 
Sbjct: 85  IENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNW--GEIDKLAALD 140

Query: 265 ELE 267
           +LE
Sbjct: 141 KLE 143

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG 397
                 I        +   +D S N I  ++      L  L  L++N N++         
Sbjct: 28  GYKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQ 85

Query: 398 SLIELQYLDLSTNKLKS-SIPKSIGNLLRLCYLDLSNN 434
           +L +L  L L+ N L        + +L  L YL +  N
Sbjct: 86  ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 29/132 (21%)

Query: 136 SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMS 195
              N     +L L        I ++   L     +D S+N++                  
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI------------------ 54

Query: 196 LFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE 255
                L G        L+ L  L ++ N++  +       L  L  L L NN L      
Sbjct: 55  ---RKLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL--G 104

Query: 256 EIRYLTSLSELE 267
           ++  L SL  L 
Sbjct: 105 DLDPLASLKSLT 116

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 23/164 (14%)

Query: 12  LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
           + L+  ++      Q  N    + LDL   ++  +  L    L+Q   + F  N++    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIR--- 55

Query: 72  PLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSG 131
             ++    L+             L    +NNN +      +   L  L+ + L+ N    
Sbjct: 56  --KLDGFPLLR-----------RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

Query: 132 -SIPLSLGNLSNLDKLYLYSN---SFSGSIPSIIGNLKSLLQLD 171
                 L +L +L  L +  N   +       +I  +  +  LD
Sbjct: 103 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 335 ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
           ++   I ++   +  ++ + + LDL    I   I      L   + +  + N++     L
Sbjct: 4   LTAELIEQA--AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR---KL 57

Query: 395 E-LGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
           +    L  L+ L ++ N++          L  L  L L+NN 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 32/213 (15%), Positives = 73/213 (34%), Gaps = 16/213 (7%)

Query: 102 NNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLG-NLSNLDKLYLYSNSF--SGSIP 158
              ++  I  +  +   L  + L +   +      +  +  N   L L S     +  + 
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 159 SIIGNLKSLLQLDLSENQL-------IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGN 211
           +I    ++L +LDL E+ +       +   P ++ +L SL +  L +     +L  ++  
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 212 LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY------NNGLYSFVPEEIRYLTSLSE 265
             +L +L L+       + + +     L  L            +YS +   +     L  
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 266 LELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298
           L    + +   +P      + L  LN+    + 
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 20/228 (8%)

Query: 5   SFPHLVHLNLSFNILFGI--IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHL--NQLRIL 60
           SF +   L LS    F    +        NL+ LDL  + +  V    + H       ++
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
             +++ L      E+   +L  ++  C      NL +  LN       +  +L     L 
Sbjct: 188 SLNISCLAS----EVSFSALERLVTRCP-----NLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 121 TMDLS------QNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
            +         +      + ++L     L  L  + ++    +P++      L  L+LS 
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298

Query: 175 NQLIG-SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221
             +    +         L  + + +      L  +    K L  L + 
Sbjct: 299 ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 49/289 (16%), Positives = 95/289 (32%), Gaps = 50/289 (17%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIG-----NLSNLQYLDLGSNQLS--GVIPL--EIG 52
             S    +  L+LS N L+ I   ++        +++  L+L  N L       L   + 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 53  HLN-QLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNS--- 108
            +   +  L    N L            L+  LA         +    L  N   +    
Sbjct: 77  AIPANVTSLNLSGNFLS-----YKSSDELVKTLAAIP----FTITVLDLGWNDFSSKSSS 127

Query: 109 -IPLVLGNLN-SLSTMDLSQNQFS--GSIPLSLG---NLSNLDKLYLYSNSFSGS----- 156
                  NL  S+++++L  N      S  L        +N++ L L  N+ +       
Sbjct: 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187

Query: 157 IPSIIGNLKSLLQLDLSENQL--IGSIPLSFG---NLSSLTLMSLFNNSLSGS----LPP 207
              +     S+  LDLS N L       L++      + +  ++L  N L G     L  
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 208 ILGNLKSLSALGLHINQLSGV-------IPSSIGNLSSLRALYLYNNGL 249
           +  +LK L  + L  + +  +       + ++  N+  +  +      +
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.55
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.47
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	83.18

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-51  Score=417.31  Aligned_cols=436  Identities=36%  Similarity=0.528  Sum_probs=312.0

Q ss_pred             CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967            5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL   84 (445)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   84 (445)
                      .+++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..  .++.|+++
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L  274 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL  274 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred             cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence            344444444444444443333 444455555555555444444444445555555555555444333332  44455555


Q ss_pred             EecCcccc-----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCcc-ccCCCCCceEEeccCc
Q 039967           85 ALCHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLS-LGNLSNLDKLYLYSNS  152 (445)
Q Consensus        85 ~l~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~  152 (445)
                      ++++|.+.           ++|++|++++|.+.+..|..++.+++|++|++++|.+....|.. +..+++|++|++++|.
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            55444332           44555555555555555555555555555555555554333332 5555566666666555


Q ss_pred             cccccCccccCCC-CcCEEeCCCccccccccccccC--CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCC
Q 039967          153 FSGSIPSIIGNLK-SLLQLDLSENQLIGSIPLSFGN--LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI  229 (445)
Q Consensus       153 ~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  229 (445)
                      +....|..+..++ +|++|++++|.+.+..|..+..  +++|++|++.+|.+.+..|..+..+++|++|++++|.+....
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence            5544555555554 5666666666555444444444  667777777777777677777888888888888888887777


Q ss_pred             CccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccC
Q 039967          230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT  309 (445)
Q Consensus       230 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  309 (445)
                      +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|.++..++
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            77888888888888888888877777888888899999988888877788888888999999999988888888888889


Q ss_pred             ccceeeccCcccccc-----ccCCCcceEEcccCccccCCCc--------------------------------------
Q 039967          310 SVERVLLNQNNLSGK-----VNVPKLGTFIISVNNISESIPP--------------------------------------  346 (445)
Q Consensus       310 ~L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~--------------------------------------  346 (445)
                      +|+.|++++|.+.+.     ..+++|+.|++++|++.+..|.                                      
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence            999999999887633     3478899999988887654443                                      


Q ss_pred             --------------------------------cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccch
Q 039967          347 --------------------------------EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL  394 (445)
Q Consensus       347 --------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  394 (445)
                                                      .+..++.|++|++++|.+++..|..++.+++|+.|++++|.+.+.+|.
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  674 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD  674 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence                                            233467899999999999999999999999999999999999999999


Q ss_pred             hhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967          395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       395 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  443 (445)
                      .++++++|+.||+++|++++..|..+..++.|++|++++|+++|.+|+.
T Consensus       675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            9999999999999999999999999999999999999999999999964

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-50  Score=410.65  Aligned_cols=438  Identities=34%  Similarity=0.492  Sum_probs=355.0

Q ss_pred             cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967            4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV   83 (445)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   83 (445)
                      ..+++|++|++++|.+....+  +..+++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..+.++++|++
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  251 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL  251 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred             ccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence            445555555555554443322  25667777777777777655555 777778888888877777777777777888888


Q ss_pred             EEecCcccc--------cccceEEecCCcCCCCccccccCC-CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc
Q 039967           84 LALCHNYFV--------CNLANFYLNNNSLFNSIPLVLGNL-NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS  154 (445)
Q Consensus        84 l~l~~~~~~--------~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  154 (445)
                      +++++|.+.        ++|++|++++|.+.+.+|..+... ++|++|++++|.++...|..+..+++|++|++.+|.+.
T Consensus       252 L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  331 (768)
T 3rgz_A          252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS  331 (768)
T ss_dssp             EECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             EECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence            887777654        577888888887776777766654 88888888888887777778888888888888888776


Q ss_pred             cccCcc-ccCCCCcCEEeCCCccccccccccccCCC-CCcEEEccCCccCCCCCccccC--CCCcCEEEccCccccCCCC
Q 039967          155 GSIPSI-IGNLKSLLQLDLSENQLIGSIPLSFGNLS-SLTLMSLFNNSLSGSLPPILGN--LKSLSALGLHINQLSGVIP  230 (445)
Q Consensus       155 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~  230 (445)
                      ...|.. +..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+..+..  +++|+++++++|.+....+
T Consensus       332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  411 (768)
T 3rgz_A          332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP  411 (768)
T ss_dssp             EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred             CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence            555554 77888888888888887767777777776 8888888888877655655555  6788999999988877777


Q ss_pred             ccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCc
Q 039967          231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTS  310 (445)
Q Consensus       231 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  310 (445)
                      ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++
T Consensus       412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN  491 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence            88888999999999999988778888889999999999999998888888889999999999999999888999999999


Q ss_pred             cceeeccCcccccc-----ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhh-------------
Q 039967          311 VERVLLNQNNLSGK-----VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL-------------  372 (445)
Q Consensus       311 L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------  372 (445)
                      |+.|++++|.+.+.     ..+++|+.|++++|++.+..|..+..+++|++|++++|.+.+..|..+             
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~  571 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA  571 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred             CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence            99999999988743     348899999999999998889999999999999999998876555433             


Q ss_pred             ---------------------------------------------------------ccccCCCEEEccCCeeecccchh
Q 039967          373 ---------------------------------------------------------GKLFSLNKLILNLNQLSGGMPLE  395 (445)
Q Consensus       373 ---------------------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~  395 (445)
                                                                               ..+++|+.|++++|++.+.+|..
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  651 (768)
T 3rgz_A          572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE  651 (768)
T ss_dssp             SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence                                                                     23577899999999999999999


Q ss_pred             hcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967          396 LGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL  444 (445)
Q Consensus       396 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  444 (445)
                      ++.+++|+.|++++|++++..|..|.++++|++|++++|+++|.+|+.+
T Consensus       652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence            9999999999999999999999999999999999999999999999765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.7e-48  Score=382.61  Aligned_cols=429  Identities=24%  Similarity=0.239  Sum_probs=225.2

Q ss_pred             CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEec
Q 039967            8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALC   87 (445)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   87 (445)
                      ++++|++++|.+..+.+..+.++++|++|++++|.+....|.+|.++++|++|++++|.+.+..|..+.++++|++++++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            56777777777776666667777777777777777766666667777777777777777666666667777777777776


Q ss_pred             Ccccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCc--eEEeccCcccc
Q 039967           88 HNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD--KLYLYSNSFSG  155 (445)
Q Consensus        88 ~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~  155 (445)
                      +|.+.          ++|++|++++|.+.+.....+..+++|++|++++|.++...+..+..+++|+  .+++.+|.+..
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            66543          4567777777766653333344467777777777766655555566666666  55566655543


Q ss_pred             ccCccccCC---------------------------------------------------CCcCEEeCCCcccccccccc
Q 039967          156 SIPSIIGNL---------------------------------------------------KSLLQLDLSENQLIGSIPLS  184 (445)
Q Consensus       156 ~~~~~~~~l---------------------------------------------------~~L~~L~l~~~~~~~~~~~~  184 (445)
                      ..+..+...                                                   .+|+.|++++|.+....+..
T Consensus       194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~  273 (606)
T 3t6q_A          194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT  273 (606)
T ss_dssp             ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred             cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence            322222110                                                   03444444444444444444


Q ss_pred             ccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc-cChhhhcccccc
Q 039967          185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS-FVPEEIRYLTSL  263 (445)
Q Consensus       185 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L  263 (445)
                      +..+++|++|++++|.+. ..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .....+..+++|
T Consensus       274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            555555555555555554 344444555555555555555443333444445555555555554432 122234444555


Q ss_pred             cEEecccCccCCCc--cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc------ccCCCcceEEc
Q 039967          264 SELELCTNHLSGVI--PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK------VNVPKLGTFII  335 (445)
Q Consensus       264 ~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l  335 (445)
                      ++|++++|.+....  +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...      ..+++|+.|++
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            55555555444322  23344444555555555544444444444445555555554444321      12344455555


Q ss_pred             ccCccccCCCccccCCCCCcEEECCCCccccc---cchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967          336 SVNNISESIPPEIGDSPKLQVLDLSSNNIVGE---IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL  412 (445)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  412 (445)
                      ++|.+....+..+..+++|++|++++|.+.+.   .+..+..+++|+.|++++|++.+..|..+.++++|+.|++++|++
T Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            55444444444444444455555544444321   112344444444444444444434444444444444444444444


Q ss_pred             ccccCccccCCCCccEEeCCCCcccc
Q 039967          413 KSSIPKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       413 ~~~~~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      ++..+..+..++.| +|++++|++++
T Consensus       513 ~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          513 TSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CcCChhHhCccccc-EEECcCCcccc
Confidence            44444444444444 44444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-47  Score=379.60  Aligned_cols=438  Identities=20%  Similarity=0.230  Sum_probs=385.9

Q ss_pred             CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc
Q 039967            2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI   81 (445)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   81 (445)
                      +|+.+++|++|++++|.+..+.+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+.++++|
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence            57899999999999999999889999999999999999999998889999999999999999999987667889999999


Q ss_pred             cEEEecCcccc----------cccceEEecCCcCCCCccccccCCCCCc--EEEccCCcccCCCCccccCC---------
Q 039967           82 NVLALCHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLS--TMDLSQNQFSGSIPLSLGNL---------  140 (445)
Q Consensus        82 ~~l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~l---------  140 (445)
                      +++++++|.+.          ++|+++++++|.+....+..++.+++|+  .|++++|.+....+..+...         
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  211 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG  211 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence            99999988664          6799999999999888888899999999  89999999876555444321         


Q ss_pred             ------------------------------------------CCCceEEeccCccccccCccccCCCCcCEEeCCCcccc
Q 039967          141 ------------------------------------------SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI  178 (445)
Q Consensus       141 ------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  178 (445)
                                                                .+|+.+++.++.+....+..|..+++|+.|++++|.+.
T Consensus       212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence                                                      15777888888887666777999999999999999987


Q ss_pred             ccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCC-CccccCCCcccEEEeeCccccccC--hh
Q 039967          179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI-PSSIGNLSSLRALYLYNNGLYSFV--PE  255 (445)
Q Consensus       179 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~  255 (445)
                       .+|..+..+++|++|++.+|.+....+..+..+++|+++++++|.+.... ...+..+++|++|++++|.+....  +.
T Consensus       292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence             67888999999999999999998777778999999999999999876333 445889999999999999987754  56


Q ss_pred             hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC-ccccccCccceeeccCcccccc-----ccCCC
Q 039967          256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSGK-----VNVPK  329 (445)
Q Consensus       256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-----~~~~~  329 (445)
                      .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+...     ..+++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            78889999999999999887777888999999999999999986654 4588999999999999988654     33889


Q ss_pred             cceEEcccCccccC---CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceee
Q 039967          330 LGTFIISVNNISES---IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD  406 (445)
Q Consensus       330 L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  406 (445)
                      |+.|++++|++.+.   .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..+..+++| .|+
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence            99999999998752   33568889999999999999998888999999999999999999998889999999999 999


Q ss_pred             cCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967          407 LSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       407 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      +++|++++..+..+..+++|+++++++|+|....+
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999998888889999999999999999986543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.5e-45  Score=365.88  Aligned_cols=434  Identities=24%  Similarity=0.226  Sum_probs=203.9

Q ss_pred             CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967            6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA   85 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   85 (445)
                      +++|++|++++|.+..+++..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++++
T Consensus        72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            34444444444444443333344444444444444444433334444444444444444444443344444444444444


Q ss_pred             ecCcccc------------cccceEEecCCcCCCCccccccCC---------------------------CCCcEEEccC
Q 039967           86 LCHNYFV------------CNLANFYLNNNSLFNSIPLVLGNL---------------------------NSLSTMDLSQ  126 (445)
Q Consensus        86 l~~~~~~------------~~L~~l~l~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~  126 (445)
                      +++|.+.            .+|+++++++|.+.+..+..+..+                           ++|+.|++++
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~  231 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN  231 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence            4443221            234444444444443333322222                           2223333333


Q ss_pred             CcccCCCCccccCCC--CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCC-
Q 039967          127 NQFSGSIPLSLGNLS--NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-  203 (445)
Q Consensus       127 ~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-  203 (445)
                      +.+....+..+..++  +|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++.++.... 
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence            333322333333332  25555555555544444455555555555555555544444444444444444444332110 


Q ss_pred             ----CCC----ccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeC----------------------------c
Q 039967          204 ----SLP----PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN----------------------------N  247 (445)
Q Consensus       204 ----~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----------------------------~  247 (445)
                          ..|    ..+..+++|+++++++|.+....+..+..+++|++|++++                            |
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence                011    1233444445555544444433333444444444444443                            3


Q ss_pred             cccccChhhhcccccccEEecccCccCCCc-cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc---
Q 039967          248 GLYSFVPEEIRYLTSLSELELCTNHLSGVI-PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG---  323 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---  323 (445)
                      .+....+..+..+++|+.|++++|.+.... ...+..+++|+++++++|.+.+..+..|..++.|+.|++++|.+..   
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  471 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS  471 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence            333333344444555555555555443222 2344445555555555555444444444455555555555544321   


Q ss_pred             ----cccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccc--------hhhccccCCCEEEccCCeeecc
Q 039967          324 ----KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP--------VQLGKLFSLNKLILNLNQLSGG  391 (445)
Q Consensus       324 ----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~  391 (445)
                          ...+++|+.|++++|++....+..+..+++|++|++++|.+++..+        ..+..+++|+.|++++|++...
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence                1224566666666666665555555666666666666666553211        1245556666666666666533


Q ss_pred             cchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccccc
Q 039967          392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       392 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  439 (445)
                      .+..|.++++|+.|++++|+++...+..|..+++|++|++++|++++.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  599 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV  599 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence            333456666666666666666655555556666666666666665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.5e-45  Score=364.70  Aligned_cols=439  Identities=23%  Similarity=0.244  Sum_probs=273.9

Q ss_pred             ccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCcc
Q 039967            3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN   82 (445)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   82 (445)
                      |+++++|++|++++|.+..+.+..+.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+.++++|+
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            44455555555555555555444555555555555555555533333455555555555555555444444455555555


Q ss_pred             EEEecCcccc----------cccceEEecCCcCCCCcccccc--CCCCCcEEEccCCcccCCCCccccCC----------
Q 039967           83 VLALCHNYFV----------CNLANFYLNNNSLFNSIPLVLG--NLNSLSTMDLSQNQFSGSIPLSLGNL----------  140 (445)
Q Consensus        83 ~l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l----------  140 (445)
                      ++++++|.+.          ++|++|++++|.+....+..+.  .+++|++|++++|.++...+..+..+          
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            5555554332          3455555555555444333322  33555555555555554444333322          


Q ss_pred             -----------------CCCceEEeccCccccccCccccCCCC--cCEEeCCCccccccccccccCCCCCcEEEccCCcc
Q 039967          141 -----------------SNLDKLYLYSNSFSGSIPSIIGNLKS--LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL  201 (445)
Q Consensus       141 -----------------~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  201 (445)
                                       ++|+.|.++++.+....+..+..++.  |+.|++++|.+....+..+..+++|++|++.+|.+
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence                             34455555555555444555655544  88888888877766666777888888888888887


Q ss_pred             CCCCCccccCCCCcCEEEccCccccC---------CCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967          202 SGSLPPILGNLKSLSALGLHINQLSG---------VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH  272 (445)
Q Consensus       202 ~~~~~~~~~~l~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  272 (445)
                      ....+..+..+++|+.++++++....         .....+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            76667777788888888887654321         112366778899999999998888777777788888888877664


Q ss_pred             cC----------------------------CCccccccccCCccEEEcCCCcccCCCC-ccccccCccceeeccCccccc
Q 039967          273 LS----------------------------GVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSG  323 (445)
Q Consensus       273 ~~----------------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  323 (445)
                      +.                            ...+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+..
T Consensus       365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  444 (680)
T 1ziw_A          365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ  444 (680)
T ss_dssp             SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred             hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence            32                            1222333444555555555555543332 345555555555555555432


Q ss_pred             c-----ccCCCcceEEcccCccc--cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc---
Q 039967          324 K-----VNVPKLGTFIISVNNIS--ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP---  393 (445)
Q Consensus       324 ~-----~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---  393 (445)
                      .     ..+++|+.|++.++.+.  +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+   
T Consensus       445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  524 (680)
T 1ziw_A          445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN  524 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred             eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence            2     22556666666666554  3456677788888888888888887777778888889999999888864322   


Q ss_pred             -----hhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCC
Q 039967          394 -----LELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILV  442 (445)
Q Consensus       394 -----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  442 (445)
                           ..+.++++|+.|++++|++....+..|..+++|++|++++|+++ .+|.
T Consensus       525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~  577 (680)
T 1ziw_A          525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPA  577 (680)
T ss_dssp             TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCH
Confidence                 22677889999999999888666667889999999999999888 4443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.8e-45  Score=365.21  Aligned_cols=426  Identities=20%  Similarity=0.194  Sum_probs=313.9

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      +++++|++++|.+..+.+..+.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....|..+.++++|+++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            57899999999888888888889999999999999888777888888999999999999888777888999999999999


Q ss_pred             cCcccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCCc----eEEeccC
Q 039967           87 CHNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD----KLYLYSN  151 (445)
Q Consensus        87 ~~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~  151 (445)
                      ++|.+.          .+|++|++++|.+.+ .+|..++++++|++|++++|.++...+..+..+.+|+    ++++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            887653          678899999988876 5688899999999999999888766666555554443    5666666


Q ss_pred             ccccccCcccc---------------------------------------------------------------------
Q 039967          152 SFSGSIPSIIG---------------------------------------------------------------------  162 (445)
Q Consensus       152 ~~~~~~~~~~~---------------------------------------------------------------------  162 (445)
                      .+....+..+.                                                                     
T Consensus       192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  271 (606)
T 3vq2_A          192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT  271 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred             CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence            55433222222                                                                     


Q ss_pred             -----------CCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCc
Q 039967          163 -----------NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS  231 (445)
Q Consensus       163 -----------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  231 (445)
                                 .+++|+.|+++++.+. ..| .+..+++|+.|++.+|.+. ..|. + .+++|+++++++|......  
T Consensus       272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~~~--  344 (606)
T 3vq2_A          272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSISF--  344 (606)
T ss_dssp             TTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCEEC--
T ss_pred             ccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCccch--
Confidence                       2334444444444432 222 3455556666666666663 4442 3 5666666666666432221  


Q ss_pred             cccCCCcccEEEeeCcccccc--ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC-cccccc
Q 039967          232 SIGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNL  308 (445)
Q Consensus       232 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~  308 (445)
                      .+..+++|++|++++|.+...  .+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  423 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL  423 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence            455677777888877776654  25566777888888888887763 34667778888888888888876655 577788


Q ss_pred             CccceeeccCcccccc-----ccCCCcceEEcccCccccC-CCccccCCCCCcEEECCCCccccccchhhccccCCCEEE
Q 039967          309 TSVERVLLNQNNLSGK-----VNVPKLGTFIISVNNISES-IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI  382 (445)
Q Consensus       309 ~~L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  382 (445)
                      ++|+.|++++|.+.+.     ..+++|+.|++.+|++.+. .+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            8888888888877643     2377888888888888763 677788888888888888888877778888888888888


Q ss_pred             ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCC-CccEEeCCCCcccccCC
Q 039967          383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLL-RLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~  441 (445)
                      +++|++.+..|..+..+++|+.|++++|+++ ..|..+..++ +|+++++++|+|....+
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            8888888777888888888888888888887 4555577776 58888888888885443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-45  Score=360.42  Aligned_cols=427  Identities=23%  Similarity=0.215  Sum_probs=360.2

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      +++++|++++|.+..+.+..+.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..+.++++|+++++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            47999999999999888888999999999999999998888888999999999999999998777788999999999999


Q ss_pred             cCcccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCC----ceEEeccC
Q 039967           87 CHNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL----DKLYLYSN  151 (445)
Q Consensus        87 ~~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~  151 (445)
                      +++.+.          .+|++|++++|.+.. .+|..++++++|++|++++|.++...+..+..+++|    +.+++.+|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            887553          579999999998876 468889999999999999999887667777777777    78889988


Q ss_pred             ccccccCccccCCCCcCEEeCCCc--------------------------------------------------------
Q 039967          152 SFSGSIPSIIGNLKSLLQLDLSEN--------------------------------------------------------  175 (445)
Q Consensus       152 ~~~~~~~~~~~~l~~L~~L~l~~~--------------------------------------------------------  175 (445)
                      .+....+..+... +|+.|+++++                                                        
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            8876666666554 6777777665                                                        


Q ss_pred             --cccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967          176 --QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV  253 (445)
Q Consensus       176 --~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  253 (445)
                        .+....+..+..+++|+.|++.++.+. ..|..+..+ +|+++++++|.+. ..+.  ..+++|+.+++.+|......
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence              222234455667788999999998887 567777777 8999999998877 3322  46788999999998876644


Q ss_pred             hhhhcccccccEEecccCccCCCc--cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc------c
Q 039967          254 PEEIRYLTSLSELELCTNHLSGVI--PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK------V  325 (445)
Q Consensus       254 ~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~  325 (445)
                      +.  ..+++|++|++++|.+....  +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+.      .
T Consensus       342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhh
Confidence            33  67889999999999887443  4567888999999999999885444 488999999999999987643      3


Q ss_pred             cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCce
Q 039967          326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQY  404 (445)
Q Consensus       326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  404 (445)
                      .+++|+.|++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|++.+..|..+..+++|+.
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            4789999999999999888889999999999999999987 468888999999999999999999777889999999999


Q ss_pred             eecCCCccccccCccccCCCCccEEeCCCCcccccCCC
Q 039967          405 LDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILV  442 (445)
Q Consensus       405 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  442 (445)
                      |++++|++++..+..|..+++|++|++++|++++..|.
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999988888899999999999999999988773

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.4e-44  Score=358.75  Aligned_cols=403  Identities=25%  Similarity=0.224  Sum_probs=309.4

Q ss_pred             CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc
Q 039967            2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI   81 (445)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   81 (445)
                      +|+++++|++|++++|.+..+.+..|.++++|++|++++|.+.+..|..++++++|++|++++|.+....+..+.++++|
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            45666666666666666666666666666666666666666665556666666666666666666655444556666666


Q ss_pred             cEEEecCcccc-----------cccceEEecCCcCCCCccccccCC---------------------------CCCcEEE
Q 039967           82 NVLALCHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNL---------------------------NSLSTMD  123 (445)
Q Consensus        82 ~~l~l~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~---------------------------~~L~~L~  123 (445)
                      +++++++|.+.           ++|++|++++|.+.+..+..++.+                           .+|+.|+
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~  210 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT  210 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence            66666555432           345555555555544333322222                           2566666


Q ss_pred             ccCCccc----------------------------------------------------------CCCCccccCCCCCce
Q 039967          124 LSQNQFS----------------------------------------------------------GSIPLSLGNLSNLDK  145 (445)
Q Consensus       124 l~~~~~~----------------------------------------------------------~~~~~~~~~l~~L~~  145 (445)
                      +++|.+.                                                          ...+. +..+++|+.
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~  289 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSA  289 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCE
Confidence            6665432                                                          01111 455678888


Q ss_pred             EEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967          146 LYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL  225 (445)
Q Consensus       146 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  225 (445)
                      +.+.++.+. ..+ .+..+++|+.|++++|.+ ..+| .+ .+++|++|++.+|......  .+..+++|+.+++++|.+
T Consensus       290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  362 (606)
T 3vq2_A          290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL  362 (606)
T ss_dssp             EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred             EEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence            888888876 455 788899999999999998 4677 45 9999999999999654332  566889999999999988


Q ss_pred             cCC--CCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCCcccCCCC
Q 039967          226 SGV--IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIP  302 (445)
Q Consensus       226 ~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~  302 (445)
                      ...  .+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..+
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  441 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD  441 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence            744  256788899999999999998774 4678889999999999999886665 578899999999999999998888


Q ss_pred             ccccccCccceeeccCcccccc------ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhcccc
Q 039967          303 KSFKNLTSVERVLLNQNNLSGK------VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLF  376 (445)
Q Consensus       303 ~~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  376 (445)
                      ..+..+++|+.|++++|.+.+.      ..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..|..+..++
T Consensus       442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence            8999999999999999988752      3378999999999999988888999999999999999999988899999999


Q ss_pred             CCCEEEccCCeeecccchhhcCCc-cCceeecCCCcccc
Q 039967          377 SLNKLILNLNQLSGGMPLELGSLI-ELQYLDLSTNKLKS  414 (445)
Q Consensus       377 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~  414 (445)
                      +|++|++++|++. .+|..+..++ +|+.|++++|++..
T Consensus       522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence            9999999999998 6777788887 69999999999873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-44  Score=364.13  Aligned_cols=431  Identities=25%  Similarity=0.242  Sum_probs=275.1

Q ss_pred             CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccC-CCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967            6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLS-GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL   84 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   84 (445)
                      .+++++|+|++|.+..+.+..+.++++|++|++++|... ...+.+|.++++|++|++++|.+.+..|..+.++++|+++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            368899999999998888888999999999999998543 3447888999999999999999988788899999999999


Q ss_pred             EecCcccc------------cccceEEecCCcCCCCcc-ccccCCCCCcEEEccCCcccCCCCccccCC--CCCceEEec
Q 039967           85 ALCHNYFV------------CNLANFYLNNNSLFNSIP-LVLGNLNSLSTMDLSQNQFSGSIPLSLGNL--SNLDKLYLY  149 (445)
Q Consensus        85 ~l~~~~~~------------~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~  149 (445)
                      ++++|.+.            ++|++|++++|.+.+..+ ..++++++|++|++++|.++...+..+..+  ++|+.|.+.
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99887653            578889999888876544 568889999999999988887777777766  788888888


Q ss_pred             cCccccccCccccCCCC------cCEEeCCCccccccccccccC------------------------------------
Q 039967          150 SNSFSGSIPSIIGNLKS------LLQLDLSENQLIGSIPLSFGN------------------------------------  187 (445)
Q Consensus       150 ~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~l~~------------------------------------  187 (445)
                      +|.+....+..+..+++      |+.|++++|.+....+..+..                                    
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            88777555555555554      888888887654333322211                                    


Q ss_pred             --CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccE
Q 039967          188 --LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSE  265 (445)
Q Consensus       188 --l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  265 (445)
                        .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence              245666666666666555556666666666666666666555556666666666666666666555556666666666


Q ss_pred             EecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcc--------------------cccc-
Q 039967          266 LELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN--------------------LSGK-  324 (445)
Q Consensus       266 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------~~~~-  324 (445)
                      |++++|.+....+..+..+++|++|++++|.+.+. +    .+++|+.+.+++|.                    +.+. 
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~  417 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD  417 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence            66666666555555566666666666666655421 1    12333333333332                    2211 


Q ss_pred             -----ccCCCcceEEcccCccccCCCc-cccCCCCCcEEECCCCccc-----cccchhhccccCCCEEEccCCeeecccc
Q 039967          325 -----VNVPKLGTFIISVNNISESIPP-EIGDSPKLQVLDLSSNNIV-----GEIPVQLGKLFSLNKLILNLNQLSGGMP  393 (445)
Q Consensus       325 -----~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~  393 (445)
                           ..+++|+.|++++|++....+. .+..+++|+.|++++|.+.     +..+..|..+++|+.|++++|++.+..+
T Consensus       418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence                 1244555555555554432211 2233445555555555443     1122334455555555555555554444


Q ss_pred             hhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967          394 LELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       394 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  443 (445)
                      ..+.++++|+.|++++|+++...+..+.  ++|++|++++|++++..|+.
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV  545 (844)
T ss_dssp             TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred             hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence            4455555555555555555544444443  55555555555555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-41  Score=333.46  Aligned_cols=425  Identities=21%  Similarity=0.205  Sum_probs=347.9

Q ss_pred             CcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967            9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH   88 (445)
Q Consensus         9 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   88 (445)
                      .++++-++..+..++. .+  .++++.|++++|.+.+..+.+|.++++|++|++++|.+.+..+..+.++++|+++++++
T Consensus         9 ~~~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            4566666666666643 33  35799999999999988888999999999999999999877788899999999999998


Q ss_pred             cccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccC-CCCccccCCCCCceEEeccCcccccc
Q 039967           89 NYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSI  157 (445)
Q Consensus        89 ~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~  157 (445)
                      +.+.          ++|++|++++|.+....+..++++++|++|++++|.++. ..|..+..+++|++|++++|.+....
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            8653          678999999998877666568899999999999998875 35788888999999999999887666


Q ss_pred             CccccCCCCc----CEEeCCCccccccccccccCCCCCcEEEccCC----------------------------------
Q 039967          158 PSIIGNLKSL----LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN----------------------------------  199 (445)
Q Consensus       158 ~~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~----------------------------------  199 (445)
                      +..+..+++|    +.+++++|.+....+..+... +|+.|++.++                                  
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~  244 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE  244 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence            6777777777    889999988876666555443 6777766654                                  


Q ss_pred             ------------------------ccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChh
Q 039967          200 ------------------------SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE  255 (445)
Q Consensus       200 ------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  255 (445)
                                              .+....+..+..+++|++++++++.+. ..+..+..+ +|+.|++++|.+..... 
T Consensus       245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~-  321 (570)
T 2z63_A          245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT-  321 (570)
T ss_dssp             ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB-
T ss_pred             hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc-
Confidence                                    222334455667788999999888877 455566667 89999999988875432 


Q ss_pred             hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCC--CccccccCccceeeccCcccccc----ccCCC
Q 039967          256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI--PKSFKNLTSVERVLLNQNNLSGK----VNVPK  329 (445)
Q Consensus       256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~----~~~~~  329 (445)
                        ..+++|+.|++.+|......+.  ..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+.    ..+++
T Consensus       322 --~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~  397 (570)
T 2z63_A          322 --LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ  397 (570)
T ss_dssp             --CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred             --ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCC
Confidence              3678899999998877644332  67899999999999887543  56788999999999999987643    34889


Q ss_pred             cceEEcccCccccCCC-ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee-cccchhhcCCccCceeec
Q 039967          330 LGTFIISVNNISESIP-PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS-GGMPLELGSLIELQYLDL  407 (445)
Q Consensus       330 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l  407 (445)
                      |+.|++.+|.+....+ ..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+. +.+|..+..+++|+.|++
T Consensus       398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  477 (570)
T 2z63_A          398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  477 (570)
T ss_dssp             CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence            9999999999986655 56889999999999999999888889999999999999999997 467888999999999999


Q ss_pred             CCCccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967          408 STNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL  444 (445)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  444 (445)
                      ++|++++..+..|..+++|++|++++|++++..|..+
T Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            9999998889999999999999999999997766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=348.01  Aligned_cols=430  Identities=22%  Similarity=0.204  Sum_probs=354.9

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCC-CcccccCCCccEEEecC
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI-PLEIGQLSLINVLALCH   88 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~   88 (445)
                      +.++.+++.++.++.    ..+++++|++++|.+....+..|.++++|++|++++|.....+ |..+.++++|+++++++
T Consensus         7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            467778888887754    4578999999999999888999999999999999999655444 78899999999999999


Q ss_pred             cccc----------cccceEEecCCcCCCCcccc--ccCCCCCcEEEccCCcccCCCC-ccccCCCCCceEEeccCcccc
Q 039967           89 NYFV----------CNLANFYLNNNSLFNSIPLV--LGNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLDKLYLYSNSFSG  155 (445)
Q Consensus        89 ~~~~----------~~L~~l~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  155 (445)
                      |.+.          .+|++|++++|.+.+..+..  +.++++|++|++++|.++...+ ..|..+++|++|++++|.+..
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            8764          78999999999998766554  8999999999999999986544 578999999999999999887


Q ss_pred             ccCccccCC--CCcCEEeCCCccccccccccccCCCC------CcEEEccCCccCCCCCcccc-----------------
Q 039967          156 SIPSIIGNL--KSLLQLDLSENQLIGSIPLSFGNLSS------LTLMSLFNNSLSGSLPPILG-----------------  210 (445)
Q Consensus       156 ~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~-----------------  210 (445)
                      ..+..+..+  ++|+.|++++|.+....+..+..+++      |+.|++++|.+....+..+.                 
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            777777777  89999999999988777666665554      99999999976543332221                 


Q ss_pred             -------------------C--CCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecc
Q 039967          211 -------------------N--LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC  269 (445)
Q Consensus       211 -------------------~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  269 (445)
                                         .  .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  322 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS  322 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence                               1  2679999999999887777788999999999999999988888889999999999999


Q ss_pred             cCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCc---
Q 039967          270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP---  346 (445)
Q Consensus       270 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---  346 (445)
                      +|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.....+++|+.+++.+|++......   
T Consensus       323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~  402 (844)
T 3j0a_A          323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT  402 (844)
T ss_dssp             SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTT
T ss_pred             CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccc
Confidence            99998777888999999999999999998777778999999999999999999887788999999988887632111   


Q ss_pred             ------------------cccCCCCCcEEECCCCccccccch-hhccccCCCEEEccCCeeec-----ccchhhcCCccC
Q 039967          347 ------------------EIGDSPKLQVLDLSSNNIVGEIPV-QLGKLFSLNKLILNLNQLSG-----GMPLELGSLIEL  402 (445)
Q Consensus       347 ------------------~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L  402 (445)
                                        .+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+..     ..+..+.++++|
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L  482 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL  482 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence                              123577788888888877644322 34557888888888887752     333557788999


Q ss_pred             ceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967          403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       403 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  443 (445)
                      +.|++++|++++..+..|..+++|++|++++|++++-.|..
T Consensus       483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  523 (844)
T 3j0a_A          483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND  523 (844)
T ss_dssp             ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred             cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence            99999999999888888999999999999999998655543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.1e-42  Score=338.35  Aligned_cols=408  Identities=19%  Similarity=0.263  Sum_probs=281.7

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccC------C------CCC---------------------cccc-
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLS------G------VIP---------------------LEIG-   52 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~------~~~---------------------~~l~-   52 (445)
                      .+++.|+|+++.+.+..+..++++++|++|++++|.+.      +      ..|                     ..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            36778888888777777777888888888888877541      0      000                     0000 


Q ss_pred             ------------------CCCCCcEEEec--CcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCC----
Q 039967           53 ------------------HLNQLRILYFD--VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNS----  108 (445)
Q Consensus        53 ------------------~~~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~----  108 (445)
                                        ....++.+.+.  .+.+++ +|..+.++++|+++++++|              .+.+.    
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n--------------~l~~~~~~~  225 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS--------------PFVAENICE  225 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC--------------CCCGGGBSS
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC--------------ccccccccc
Confidence                              00011111111  234444 5666666665555544443              33432    


Q ss_pred             -------------cccccc--CCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCc-ccc-ccCccccCC------C
Q 039967          109 -------------IPLVLG--NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS-FSG-SIPSIIGNL------K  165 (445)
Q Consensus       109 -------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~  165 (445)
                                   +|..+.  ++++|++|++++|.+....|..+..+++|++|++++|. ++. ..|..+..+      +
T Consensus       226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~  305 (636)
T 4eco_A          226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE  305 (636)
T ss_dssp             SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred             cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence                         677777  77888888888877776777777778888888888776 664 456655554      7


Q ss_pred             CcCEEeCCCccccccccc--cccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCc-ccEE
Q 039967          166 SLLQLDLSENQLIGSIPL--SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS-LRAL  242 (445)
Q Consensus       166 ~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L  242 (445)
                      +|+.|++++|.+. .+|.  .+..+++|++|++++|.+.+..| .+..+++|++|++++|.+. ..+..+..+++ |++|
T Consensus       306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL  382 (636)
T ss_dssp             TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred             CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence            7888888888777 5666  67777888888888877775555 6777777888888887776 55556777777 8888


Q ss_pred             EeeCccccccChhhhcccc--cccEEecccCccCCCcccccc-------ccCCccEEEcCCCcccCCCCccccccCccce
Q 039967          243 YLYNNGLYSFVPEEIRYLT--SLSELELCTNHLSGVIPHSIG-------NLTGLLLLNMCENHLSGPIPKSFKNLTSVER  313 (445)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  313 (445)
                      ++++|.+.. .+..+...+  +|++|++++|.+....+..+.       .+++|++|++++|.+....+..+..+++|+.
T Consensus       383 ~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          383 SFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS  461 (636)
T ss_dssp             ECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred             EccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence            888877764 444444433  678888888777766665555       5667888888888777444444556778888


Q ss_pred             eeccCcccccccc--C----------CCcceEEcccCccccCCCcccc--CCCCCcEEECCCCccccccchhhccccCCC
Q 039967          314 VLLNQNNLSGKVN--V----------PKLGTFIISVNNISESIPPEIG--DSPKLQVLDLSSNNIVGEIPVQLGKLFSLN  379 (445)
Q Consensus       314 L~l~~~~~~~~~~--~----------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  379 (445)
                      |++++|.+...+.  +          ++|+.|++++|++. ..+..+.  .+++|++|++++|.+++ .|..+.++++|+
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence            8888877763322  1          27888888888887 5666665  88889999999888885 777888888999


Q ss_pred             EEEcc------CCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967          380 KLILN------LNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       380 ~L~l~------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      .|+++      +|.+.+.+|..++.+++|+.|++++|++. ..|..+.  ++|++|++++|++..
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence            99884      56666678888888888999999999884 5565554  788899999987763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4e-41  Score=327.71  Aligned_cols=418  Identities=19%  Similarity=0.204  Sum_probs=327.0

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN   89 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~   89 (445)
                      ++|+++++.++.++. .+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|+++++++|
T Consensus         3 ~~l~ls~n~l~~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcccccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            578888888886643 333  78888888888888777778888888888888888888777788888888888888887


Q ss_pred             ccc-------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCC--ceEEeccCcc--cccc
Q 039967           90 YFV-------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL--DKLYLYSNSF--SGSI  157 (445)
Q Consensus        90 ~~~-------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~  157 (445)
                      .+.       ++|++|++++|.+.+ ..|..++++++|++|++++|.++.   ..+..+++|  +.|.+.+|.+  ....
T Consensus        80 ~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B           80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             CCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred             ceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccc
Confidence            653       678899999998887 467889999999999999998874   456777777  9999988877  4344


Q ss_pred             CccccC--------------------------CCCcCEEeCCCcc-------ccccccccccCCCCCcEEEccCCccCCC
Q 039967          158 PSIIGN--------------------------LKSLLQLDLSENQ-------LIGSIPLSFGNLSSLTLMSLFNNSLSGS  204 (445)
Q Consensus       158 ~~~~~~--------------------------l~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~  204 (445)
                      |..+..                          +++|+.+++++|.       +.+..+ .+..+++|+.|.+.++.+...
T Consensus       157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHH
T ss_pred             cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHH
Confidence            444433                          5667777776664       333333 567777888888777665421


Q ss_pred             CCccc---cCCCCcCEEEccCccccCCCCccc-----cCCCcccEEEeeCccccccChhhhccc---ccccEEecccCcc
Q 039967          205 LPPIL---GNLKSLSALGLHINQLSGVIPSSI-----GNLSSLRALYLYNNGLYSFVPEEIRYL---TSLSELELCTNHL  273 (445)
Q Consensus       205 ~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~  273 (445)
                      ....+   ...++|+++++++|.+....+..+     ..+++|+.++++++.+ ..+...+..+   .+|+.|++++|.+
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l  314 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRM  314 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcc
Confidence            11111   123589999999998875666666     7889999999999887 4332444433   5799999999987


Q ss_pred             CCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc-------cccCCCcceEEcccCccccCCCc
Q 039967          274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG-------KVNVPKLGTFIISVNNISESIPP  346 (445)
Q Consensus       274 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~  346 (445)
                      ....  ....+++|++|++++|.+.+..+..+..+++|++|++++|.+.+       ...+++|+.|++++|++.+..+.
T Consensus       315 ~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~  392 (520)
T 2z7x_B          315 VHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK  392 (520)
T ss_dssp             CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred             cccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence            6432  23678899999999999998788899999999999999999875       23488999999999999874444


Q ss_pred             -cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCC
Q 039967          347 -EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR  425 (445)
Q Consensus       347 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  425 (445)
                       .+..+++|++|++++|.+++..+..+.  ++|+.|++++|++. .+|..+..+++|+.|++++|+++...+..+..+++
T Consensus       393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  469 (520)
T 2z7x_B          393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS  469 (520)
T ss_dssp             CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence             578889999999999999877666554  79999999999998 77877779999999999999999555555899999


Q ss_pred             ccEEeCCCCcccccC
Q 039967          426 LCYLDLSNNQFGHKI  440 (445)
Q Consensus       426 L~~l~l~~~~~~~~~  440 (445)
                      |++|++++|++.+..
T Consensus       470 L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CCEEECCSSCBCCCH
T ss_pred             ccEEECcCCCCcccC
Confidence            999999999998653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-41  Score=334.29  Aligned_cols=425  Identities=21%  Similarity=0.206  Sum_probs=278.3

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      ++|++|++++|.+..+.+..+.++++|++|++++|.+.+..+.++.++++|++|++++|.+.+..+..+.++++|+++++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            46788888888777776677777888888888888777666677777888888888888777655556777777777777


Q ss_pred             cCcccc-----------cccceEEecCCcCCCCcc-ccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc
Q 039967           87 CHNYFV-----------CNLANFYLNNNSLFNSIP-LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS  154 (445)
Q Consensus        87 ~~~~~~-----------~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  154 (445)
                      ++|.+.           ++|++|++++|...+.++ ..+.++++|++|++++|.++...|..+..+++|++|++.++.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            766442           356666666665333333 35666666666666666666555556666666666666555543


Q ss_pred             cccCcc-ccCCCCcCEEeCCCccccccc--c-ccccCCCCCcEEEccCCccCCCC-------------------------
Q 039967          155 GSIPSI-IGNLKSLLQLDLSENQLIGSI--P-LSFGNLSSLTLMSLFNNSLSGSL-------------------------  205 (445)
Q Consensus       155 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~-~~l~~l~~L~~L~l~~~~~~~~~-------------------------  205 (445)
                       ..+.. +..+++|++|++++|.+.+..  + .....+++|+.|++.++.+....                         
T Consensus       186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence             22222 234555556665555544311  0 01122334444444443332100                         


Q ss_pred             ---------CccccCCCCcCEEEccCccccCCC-----CccccCCCcccEEEeeCccccccChhhhcccccccEEecccC
Q 039967          206 ---------PPILGNLKSLSALGLHINQLSGVI-----PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN  271 (445)
Q Consensus       206 ---------~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  271 (445)
                               ...+..+++++.+++.++.+....     ...+...++|+.+++++|.+...+...+..+++|++|++++|
T Consensus       265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred             ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence                     011233344444444444332110     001122356778888887776644444457888888888888


Q ss_pred             ccCCCcc---ccccccCCccEEEcCCCcccCCCC--ccccccCccceeeccCccccccc----cCCCcceEEcccCcccc
Q 039967          272 HLSGVIP---HSIGNLTGLLLLNMCENHLSGPIP--KSFKNLTSVERVLLNQNNLSGKV----NVPKLGTFIISVNNISE  342 (445)
Q Consensus       272 ~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~----~~~~L~~L~l~~~~~~~  342 (445)
                      .+.+..+   ..+..+++|++|++++|.+.+..+  ..+..+++|+.|++++|.+...+    .+++|+.|++++|.+..
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred             ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc
Confidence            8764432   235677888888888888764322  35778888888888888876443    26788888888888764


Q ss_pred             CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967          343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       343 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      . +..+  .++|++|++++|.+++..    ..+++|++|++++|++. .+|. ...+++|++|++++|++++..+..+..
T Consensus       425 l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  495 (549)
T 2z81_A          425 V-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR  495 (549)
T ss_dssp             C-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred             c-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence            3 2222  267888999988887532    57899999999999998 5664 457899999999999999888888999


Q ss_pred             CCCccEEeCCCCcccccCC
Q 039967          423 LLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       423 ~~~L~~l~l~~~~~~~~~~  441 (445)
                      +++|++|++++|+|.+..|
T Consensus       496 l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          496 LTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CTTCCEEECCSSCBCCCHH
T ss_pred             CcccCEEEecCCCccCCCc
Confidence            9999999999999998766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.1e-41  Score=333.67  Aligned_cols=403  Identities=20%  Similarity=0.282  Sum_probs=329.3

Q ss_pred             CCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccc------c------CCCcccccCCCccEEEecCcccc------
Q 039967           31 SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH------G------SIPLEIGQLSLINVLALCHNYFV------   92 (445)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~l~l~~~~~~------   92 (445)
                      .+++.|+++++.+.+..|.+++++++|++|++++|.+.      +      .+|...  +..|+ +++..+.+.      
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            47999999999998888899999999999999988652      1      111111  11111 111111100      


Q ss_pred             -----------------------cccceEEec--CCcCCCCccccccCCCCCcEEEccCCcccCC---------------
Q 039967           93 -----------------------CNLANFYLN--NNSLFNSIPLVLGNLNSLSTMDLSQNQFSGS---------------  132 (445)
Q Consensus        93 -----------------------~~L~~l~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------  132 (445)
                                             ..++.+++.  .|.+.+ +|..++++++|++|++++|.++..               
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence                                   011111111  345565 888999999999999999999864               


Q ss_pred             --CCcccc--CCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc-ccc-cccccccCC------CCCcEEEccCCc
Q 039967          133 --IPLSLG--NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ-LIG-SIPLSFGNL------SSLTLMSLFNNS  200 (445)
Q Consensus       133 --~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~  200 (445)
                        +|..+.  .+++|++|++++|.+....|..+.++++|++|++++|. +.+ ..|..+..+      ++|++|++++|.
T Consensus       237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence              888888  99999999999999888899999999999999999998 776 678777766      999999999999


Q ss_pred             cCCCCCc--cccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhccccc-ccEEecccCccCCCc
Q 039967          201 LSGSLPP--ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS-LSELELCTNHLSGVI  277 (445)
Q Consensus       201 ~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~  277 (445)
                      +. ..|.  .+..+++|++|++++|.+....+ .+..+++|++|++++|.+.. .+..+..+++ |++|++++|.+. ..
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~-~l  392 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YI  392 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCc-cc
Confidence            99 7787  89999999999999999885555 78889999999999999885 5667888898 999999999998 55


Q ss_pred             cccccccC--CccEEEcCCCcccCCCCcccc-------ccCccceeeccCcccccccc-----CCCcceEEcccCccccC
Q 039967          278 PHSIGNLT--GLLLLNMCENHLSGPIPKSFK-------NLTSVERVLLNQNNLSGKVN-----VPKLGTFIISVNNISES  343 (445)
Q Consensus       278 ~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~-----~~~L~~L~l~~~~~~~~  343 (445)
                      +..+....  +|++|++++|.+.+..|..+.       .+++|+.|++++|.+...+.     +++|+.|++++|++...
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence            66665544  899999999999988888777       78899999999999885543     78999999999999844


Q ss_pred             CCccccCC-------CCCcEEECCCCccccccchhhc--cccCCCEEEccCCeeecccchhhcCCccCceeec------C
Q 039967          344 IPPEIGDS-------PKLQVLDLSSNNIVGEIPVQLG--KLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL------S  408 (445)
Q Consensus       344 ~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~  408 (445)
                      ....+...       ++|++|++++|.++ .+|..+.  .+++|+.|++++|++.+ +|..+..+++|+.|++      +
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred             CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence            43344333       39999999999998 6777776  89999999999999995 8888999999999999      5


Q ss_pred             CCccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967          409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL  444 (445)
Q Consensus       409 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  444 (445)
                      +|++.+..|..+..+++|++|++++|++ +++|..+
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~  585 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI  585 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence            6778888899999999999999999999 7899764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.5e-40  Score=330.31  Aligned_cols=319  Identities=18%  Similarity=0.253  Sum_probs=211.9

Q ss_pred             cccccc--CCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCc-ccc-ccCccccC-------CCCcCEEeCCCccc
Q 039967          109 IPLVLG--NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS-FSG-SIPSIIGN-------LKSLLQLDLSENQL  177 (445)
Q Consensus       109 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~  177 (445)
                      +|..++  ++++|++|++++|.+....|..+..+++|+.|++++|. ++. ..|..+..       +++|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            566655  77777777777777666667777777777777777776 553 34443333       34777777777776


Q ss_pred             cccccc--cccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCc-ccEEEeeCccccccCh
Q 039967          178 IGSIPL--SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS-LRALYLYNNGLYSFVP  254 (445)
Q Consensus       178 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~  254 (445)
                      . .+|.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .+
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp  635 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IP  635 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cc
Confidence            6 5565  6677777777777777776 455 5666777777777777766 55555666666 7777777777664 34


Q ss_pred             hhhcccc--cccEEecccCccCCCcccc---cc--ccCCccEEEcCCCcccCCCCc-cccccCccceeeccCcccccccc
Q 039967          255 EEIRYLT--SLSELELCTNHLSGVIPHS---IG--NLTGLLLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGKVN  326 (445)
Q Consensus       255 ~~~~~~~--~L~~L~l~~~~~~~~~~~~---l~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~  326 (445)
                      ..+...+  +|+.|++++|.+....+..   +.  ..++|+.|++++|.+. .+|. .+..+++|+.|++++|.+...+.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            4444433  3777777777665433211   11  2246777777777776 3343 34466777777777776653222


Q ss_pred             ------------CCCcceEEcccCccccCCCcccc--CCCCCcEEECCCCccccccchhhccccCCCEEEccC------C
Q 039967          327 ------------VPKLGTFIISVNNISESIPPEIG--DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL------N  386 (445)
Q Consensus       327 ------------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~  386 (445)
                                  +++|+.|++++|++. ..+..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++      |
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N  792 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN  792 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence                        127777777777777 4555555  77888888888888775 566777788888888865      5


Q ss_pred             eeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967          387 QLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       387 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      .+.+.+|..+..+++|+.|+|++|++. ..|..+.  ++|+.|++++|++..
T Consensus       793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          793 RILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCE
T ss_pred             cccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCc
Confidence            566677777778888888888888883 5555554  588888888887764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.2e-39  Score=315.09  Aligned_cols=425  Identities=18%  Similarity=0.175  Sum_probs=317.4

Q ss_pred             CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967            6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA   85 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   85 (445)
                      |+...+.+.+++.++.++.. +.  ++|++|++++|.+.+..+.++.++++|++|++++|.+.+..+..+.++++|++++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~-~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSG-LT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSC-CC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCceEECCCCcccccccc-CC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            55666678888888877553 32  7899999999999988888999999999999999999988888999999999999


Q ss_pred             ecCcccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCc-ccCCCCccccCCCCCceEEeccCcc
Q 039967           86 LCHNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQ-FSGSIPLSLGNLSNLDKLYLYSNSF  153 (445)
Q Consensus        86 l~~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~  153 (445)
                      +++|.+.          ++|++|++++|.+.. ..+..+.++++|++|++++|. +....+..+..+++|++|++.+|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            9988664          678899999988876 356678888999999998887 4434446788889999999998888


Q ss_pred             ccccCccccCCCCcCEEeCCCcccccccccc-ccCCCCCcEEEccCCccCCCC---CccccCCCCcCEEEccCccccCCC
Q 039967          154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSL---PPILGNLKSLSALGLHINQLSGVI  229 (445)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~  229 (445)
                      ....+..+..+++|++|+++++.+.. .+.. +..+++|+.|++++|.+....   ......++.|+.++++++.+....
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             cccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            87778888888899999998887653 3433 356889999999998887531   122234566777776666543211


Q ss_pred             C----cc------------------------------ccCCCcccEEEeeCcccccc-----ChhhhcccccccEEeccc
Q 039967          230 P----SS------------------------------IGNLSSLRALYLYNNGLYSF-----VPEEIRYLTSLSELELCT  270 (445)
Q Consensus       230 ~----~~------------------------------~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~  270 (445)
                      .    ..                              +..+++++.+.+.++.+...     ........++|+.+++++
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence            1    11                              22334444444444433221     111123346788888888


Q ss_pred             CccCCCccccccccCCccEEEcCCCcccCCCC---ccccccCccceeeccCccccc-------cccCCCcceEEcccCcc
Q 039967          271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP---KSFKNLTSVERVLLNQNNLSG-------KVNVPKLGTFIISVNNI  340 (445)
Q Consensus       271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~-------~~~~~~L~~L~l~~~~~  340 (445)
                      |.+.......+..+++|++|++++|.+.+..+   ..+..+++|+.|++++|.+.+       ...+++|+.|++++|++
T Consensus       320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            88764333334678899999999998875542   346788899999999998864       34488999999999988


Q ss_pred             ccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccc
Q 039967          341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI  420 (445)
Q Consensus       341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  420 (445)
                      . ..|..+..+++|++|++++|.+.+ .+..+  .++|+.|++++|++.+..    ..+++|++|++++|+++ ..|. .
T Consensus       400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~  469 (549)
T 2z81_A          400 H-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A  469 (549)
T ss_dssp             C-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred             c-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence            7 567778888999999999999873 33333  368999999999887432    57899999999999998 4443 4


Q ss_pred             cCCCCccEEeCCCCcccccCCCCC
Q 039967          421 GNLLRLCYLDLSNNQFGHKILVEL  444 (445)
Q Consensus       421 ~~~~~L~~l~l~~~~~~~~~~~~~  444 (445)
                      ..+++|++|++++|++++..|.++
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIF  493 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGG
T ss_pred             ccCccCCEEecCCCccCCcCHHHH
Confidence            678999999999999998777643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.6e-38  Score=301.85  Aligned_cols=372  Identities=22%  Similarity=0.195  Sum_probs=240.7

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN   89 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~   89 (445)
                      +.++.+++.+..++.  +  .++|++|++++|.+.+..+..+.++++|++|+++++.+.+.++                 
T Consensus        13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----------------   71 (455)
T 3v47_A           13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----------------   71 (455)
T ss_dssp             TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred             cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------
Confidence            345555555555533  2  2567777777777776666677777777777777766542221                 


Q ss_pred             ccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCc--cccCCCCc
Q 039967           90 YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS--IIGNLKSL  167 (445)
Q Consensus        90 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L  167 (445)
                                          +..+.++++|++|++++|.++...|..|..+++|++|++++|.+....+.  .+..+++|
T Consensus        72 --------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           72 --------------------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL  131 (455)
T ss_dssp             --------------------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred             --------------------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence                                22344555555555555555544455555555555555555555432222  25555666


Q ss_pred             CEEeCCCcccccccccc-ccCCCCCcEEEccCCccCCCCCccccCC--CCcCEEEccCccccCCCCcc--------ccCC
Q 039967          168 LQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILGNL--KSLSALGLHINQLSGVIPSS--------IGNL  236 (445)
Q Consensus       168 ~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------~~~~  236 (445)
                      ++|++++|.+....|.. +..+++|++|++++|.+....+..+..+  ..++.++++++.+.......        +..+
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  211 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN  211 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence            66666666555444443 4555666666666665555444444443  45666666666554332221        2245


Q ss_pred             CcccEEEeeCccccccChhhhccc---ccccEEecccCccCCCc----------ccccc--ccCCccEEEcCCCcccCCC
Q 039967          237 SSLRALYLYNNGLYSFVPEEIRYL---TSLSELELCTNHLSGVI----------PHSIG--NLTGLLLLNMCENHLSGPI  301 (445)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~----------~~~l~--~~~~L~~L~l~~~~~~~~~  301 (445)
                      ++|+.|++++|.+....+..+...   ++++.+++++|......          ...+.  ..++|+++++++|.+.+..
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            677777777776655444444332   56777777766443211          11111  1246777777777666556


Q ss_pred             CccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEE
Q 039967          302 PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL  381 (445)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  381 (445)
                      +..+..+++|+.|++++|.+                   .+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEI-------------------NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCC-------------------CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             hhhcccCCCCCEEECCCCcc-------------------cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            66666666666666665544                   45556678889999999999999987788889999999999


Q ss_pred             EccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967          382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      ++++|++.+..+..+.++++|++|++++|+++...+..+..+++|++|++++|++++..|
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999987778889999999999999999997777788999999999999999998887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.7e-39  Score=322.13  Aligned_cols=367  Identities=21%  Similarity=0.256  Sum_probs=275.8

Q ss_pred             cccCCCCCccccCCCCCcEEEecCccccc-----------------CCCcccc--cCCCccEEEecCcccccccceEEec
Q 039967           41 NQLSGVIPLEIGHLNQLRILYFDVNQLHG-----------------SIPLEIG--QLSLINVLALCHNYFVCNLANFYLN  101 (445)
Q Consensus        41 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~l~l~~~~~~~~L~~l~l~  101 (445)
                      |.+.+ +|..+.++++|++|++++|.+.+                 .+|..+.  ++++|+.++              ++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~--------------Ls  499 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE--------------LY  499 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE--------------EE
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE--------------Cc
Confidence            45554 67788899999999999999887                 2777766  777555554              44


Q ss_pred             CCcCCCCccccccCCCCCcEEEccCCc-ccC-CCCccccC-------CCCCceEEeccCccccccCc--cccCCCCcCEE
Q 039967          102 NNSLFNSIPLVLGNLNSLSTMDLSQNQ-FSG-SIPLSLGN-------LSNLDKLYLYSNSFSGSIPS--IIGNLKSLLQL  170 (445)
Q Consensus       102 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L  170 (445)
                      +|.+.+.+|..+.++++|++|++++|. ++. ..|..+..       +++|++|++++|.+. .+|.  .+.++++|+.|
T Consensus       500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L  578 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL  578 (876)
T ss_dssp             SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred             CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence            455566778888888888888888887 664 45654444       448888888888887 6777  78888888888


Q ss_pred             eCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCC-cCEEEccCccccCCCCccccCCC--cccEEEeeCc
Q 039967          171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS-LSALGLHINQLSGVIPSSIGNLS--SLRALYLYNN  247 (445)
Q Consensus       171 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~  247 (445)
                      ++++|.+. .+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. ..+..+...+  +|+.|++++|
T Consensus       579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence            88888877 566 7788888888888888888 67777788888 888888888877 5555555544  4888888888


Q ss_pred             cccccChhhh---c--ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCc-ccc-------ccCcccee
Q 039967          248 GLYSFVPEEI---R--YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK-SFK-------NLTSVERV  314 (445)
Q Consensus       248 ~~~~~~~~~~---~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~-------~~~~L~~L  314 (445)
                      .+....+...   .  ..++|+.|++++|.+.......+..+++|+.|++++|.+. .+|. .+.       ++++|+.|
T Consensus       655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L  733 (876)
T 4ecn_A          655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTI  733 (876)
T ss_dssp             CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEE
T ss_pred             cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEE
Confidence            8765433211   1  2347888888888887544444557788888888888887 4443 332       23388888


Q ss_pred             eccCccccccc------cCCCcceEEcccCccccCCCccccCCCCCcEEECCC------CccccccchhhccccCCCEEE
Q 039967          315 LLNQNNLSGKV------NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS------NNIVGEIPVQLGKLFSLNKLI  382 (445)
Q Consensus       315 ~l~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~  382 (445)
                      ++++|.+...+      .+++|+.|++++|++.+ .|..+..+++|+.|++++      |.+.+..|..+.++++|+.|+
T Consensus       734 ~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~  812 (876)
T 4ecn_A          734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ  812 (876)
T ss_dssp             ECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             ECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence            88888876332      46789999999998886 677888999999999976      777778899999999999999


Q ss_pred             ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967          383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS  432 (445)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  432 (445)
                      +++|++ +.+|..+.  ++|+.|+|++|++....+..+.....+..+.+.
T Consensus       813 Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~  859 (876)
T 4ecn_A          813 IGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL  859 (876)
T ss_dssp             CCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEE
T ss_pred             CCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeec
Confidence            999999 47787765  699999999999987766666443333333333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.7e-38  Score=307.00  Aligned_cols=424  Identities=19%  Similarity=0.185  Sum_probs=307.2

Q ss_pred             CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967            5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL   84 (445)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   84 (445)
                      .|...++++++++.++.++.. +.  +++++|++++|.+.+..+.++.++++|++|++++|.+.+..|..+.++++|+++
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCccCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            345568999999998876543 33  789999999999998877899999999999999999998778889999999999


Q ss_pred             EecCcccc-------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCC--ceEEeccCcc-
Q 039967           85 ALCHNYFV-------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL--DKLYLYSNSF-  153 (445)
Q Consensus        85 ~l~~~~~~-------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~-  153 (445)
                      ++++|.+.       ++|++|++++|.+.+ ..|..++++++|++|++++|.++..   .+..+++|  +++++.+|.+ 
T Consensus       106 ~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~  182 (562)
T 3a79_B          106 DVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH  182 (562)
T ss_dssp             ECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred             ECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence            99888664       578888888888776 3457788888888888888887642   34445555  8888888776 


Q ss_pred             -ccccCccccCC--------------------------CCcCEEeCCCcccc----ccccccccCCCCCcEEEccCCccC
Q 039967          154 -SGSIPSIIGNL--------------------------KSLLQLDLSENQLI----GSIPLSFGNLSSLTLMSLFNNSLS  202 (445)
Q Consensus       154 -~~~~~~~~~~l--------------------------~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~  202 (445)
                       ....+..+..+                          ++|+.+++++|...    ......+..+++++.+.+.++.+.
T Consensus       183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred             ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence             44444444432                          33444444443200    001122334444444444444332


Q ss_pred             CC----CCccccCCCCcCEEEccCccccCCCCccc-----cCCCcccEEEeeCccccccChhhhcc---cccccEEeccc
Q 039967          203 GS----LPPILGNLKSLSALGLHINQLSGVIPSSI-----GNLSSLRALYLYNNGLYSFVPEEIRY---LTSLSELELCT  270 (445)
Q Consensus       203 ~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~  270 (445)
                      ..    .+. ....++|+++++++|.+....+..+     ..++.|+.+++..+.+ .+....+..   ..++++|++++
T Consensus       263 ~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~  340 (562)
T 3a79_B          263 WKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISD  340 (562)
T ss_dssp             HHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEES
T ss_pred             HHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccC
Confidence            10    001 1123478888888887765555444     5555666666665554 222222222   25699999999


Q ss_pred             CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc-------ccCCCcceEEcccCcccc-
Q 039967          271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-------VNVPKLGTFIISVNNISE-  342 (445)
Q Consensus       271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~L~~L~l~~~~~~~-  342 (445)
                      |.+....  ....+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.       ..+++|+.|++++|++.+ 
T Consensus       341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred             CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence            8875322  226778999999999999987888999999999999999998752       347899999999999987 


Q ss_pred             CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967          343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       343 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      .....+..+++|++|++++|.+++..+..+.  ++|+.|++++|++. .+|..+..+++|+.|++++|+++...+..+..
T Consensus       419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  495 (562)
T 3a79_B          419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR  495 (562)
T ss_dssp             CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred             cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence            4444678899999999999999866655543  79999999999998 67777779999999999999999554455899


Q ss_pred             CCCccEEeCCCCcccccCC
Q 039967          423 LLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       423 ~~~L~~l~l~~~~~~~~~~  441 (445)
                      +++|+++++++|+|.+..|
T Consensus       496 l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCEEEecCCCcCCCcc
Confidence            9999999999999986543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.2e-38  Score=305.78  Aligned_cols=394  Identities=23%  Similarity=0.221  Sum_probs=301.6

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      ++|++|++++|.+..+.+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .+|..  .+++|+++++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            57888888888877776677778888888888888877666777888888888888888776 34444  6777888887


Q ss_pred             cCcccc-----------cccceEEecCCcCCCCccccccCCCCC--cEEEccCCcc--cCCCCccc--------------
Q 039967           87 CHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNLNSL--STMDLSQNQF--SGSIPLSL--------------  137 (445)
Q Consensus        87 ~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~--------------  137 (445)
                      ++|.+.           .+|++|++++|.+..   ..+..+++|  +.|++++|.+  ....|..+              
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            777542           567778887777654   345566666  7777777766  33334333              


Q ss_pred             ------------cCCCCCceEEeccCc-------cccccCccccCCCCcCEEeCCCccccccccccc---cCCCCCcEEE
Q 039967          138 ------------GNLSNLDKLYLYSNS-------FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF---GNLSSLTLMS  195 (445)
Q Consensus       138 ------------~~l~~L~~L~l~~~~-------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~  195 (445)
                                  ..+++|+.+++.+|.       +....+ .+..+++|+.|+++++.+.+..+..+   ...++|++|+
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                        447788888888875       443333 67889999999999888664322222   1246999999


Q ss_pred             ccCCccCCCCCccc-----cCCCCcCEEEccCccccCCCCccccCC---CcccEEEeeCccccccChhhhcccccccEEe
Q 039967          196 LFNNSLSGSLPPIL-----GNLKSLSALGLHINQLSGVIPSSIGNL---SSLRALYLYNNGLYSFVPEEIRYLTSLSELE  267 (445)
Q Consensus       196 l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  267 (445)
                      +++|.+.+..|..+     ..++.|+.++++++.+ ......+..+   ++|+.|++++|.+....  ....+++|++|+
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~  330 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence            99999887777777     8889999999998887 2222233322   57999999999876532  125778999999


Q ss_pred             cccCccCCCccccccccCCccEEEcCCCcccC--CCCccccccCccceeeccCccccc-c-----ccCCCcceEEcccCc
Q 039967          268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG--PIPKSFKNLTSVERVLLNQNNLSG-K-----VNVPKLGTFIISVNN  339 (445)
Q Consensus       268 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~-----~~~~~L~~L~l~~~~  339 (445)
                      +++|.+....+..+..+++|++|++++|.+.+  ..+..+..+++|+.|++++|.+.+ .     ..+++|+.|++++|+
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            99999987777888999999999999999885  345678899999999999999876 2     236899999999999


Q ss_pred             cccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh-hcCCccCceeecCCCcccc
Q 039967          340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDLSTNKLKS  414 (445)
Q Consensus       340 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  414 (445)
                      +++..+..+.  ++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|++..
T Consensus       411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence            9766655554  78999999999998 77777779999999999999998 55554 8899999999999999873

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.6e-36  Score=299.62  Aligned_cols=423  Identities=22%  Similarity=0.206  Sum_probs=286.3

Q ss_pred             CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEec
Q 039967            8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALC   87 (445)
Q Consensus         8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   87 (445)
                      ++++|+|++|.++.+++..|.++++|++|++++|.+....+.+|.++++|++|++++|.+....+..|.++++|++++++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            78999999999999988899999999999999999998888889999999999999999987666778999988888888


Q ss_pred             Ccccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCCc----eEEeccCc
Q 039967           88 HNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD----KLYLYSNS  152 (445)
Q Consensus        88 ~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~  152 (445)
                      +|.+.          ++|++|++++|.+.. ..|..+..+++|++|++++|.++...+..+..+.+++    .+++..+.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            77543          567777777777654 3455667777777777777776655454444333222    23344433


Q ss_pred             cccccCccccCCCCcCEEeCCCccccc-cc--------------------------------------------------
Q 039967          153 FSGSIPSIIGNLKSLLQLDLSENQLIG-SI--------------------------------------------------  181 (445)
Q Consensus       153 ~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~--------------------------------------------------  181 (445)
                      +....+..+ ....++.+++.++.... ..                                                  
T Consensus       213 l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~  291 (635)
T 4g8a_A          213 MNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  291 (635)
T ss_dssp             CCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred             ccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            321111111 11112222222111000 00                                                  


Q ss_pred             -------cc----------------------cccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCcc
Q 039967          182 -------PL----------------------SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS  232 (445)
Q Consensus       182 -------~~----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  232 (445)
                             +.                      .+.....++.|++.++.+.....   ..++.|+.+++..+.....  ..
T Consensus       292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~  366 (635)
T 4g8a_A          292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FS  366 (635)
T ss_dssp             CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CC
T ss_pred             cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cc
Confidence                   00                      01112223333333333221111   1123333333333332211  12


Q ss_pred             ccCCCcccEEEeeCcccccc--ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCC-CccccccC
Q 039967          233 IGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI-PKSFKNLT  309 (445)
Q Consensus       233 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  309 (445)
                      ...+++|+.++++.|.+...  .+.......+++++++..+... .....+..++.|+.+++.++...... ...+..++
T Consensus       367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccc
Confidence            23456677777776655331  2334445566777777666554 23344566788888888877665443 34677888


Q ss_pred             ccceeeccCccccccc-----cCCCcceEEcccCccc-cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEc
Q 039967          310 SVERVLLNQNNLSGKV-----NVPKLGTFIISVNNIS-ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL  383 (445)
Q Consensus       310 ~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  383 (445)
                      .++.++++.|.+....     .++.++.|++++|+.. ...+..+..+++|++|++++|.+++..|..|.++++|+.|+|
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            8999999988876432     3778999999998754 346778889999999999999999888899999999999999


Q ss_pred             cCCeeecccchhhcCCccCceeecCCCccccccCccccCC-CCccEEeCCCCccc
Q 039967          384 NLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL-LRLCYLDLSNNQFG  437 (445)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~  437 (445)
                      ++|++.+..+..+.++++|++|++++|+++...+..+..+ ++|++|++++|+|.
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            9999997778889999999999999999998888999888 58999999999997

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.7e-35  Score=280.43  Aligned_cols=345  Identities=29%  Similarity=0.419  Sum_probs=180.8

Q ss_pred             CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967            6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA   85 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   85 (445)
                      ++++++|+++++.+..++  .+..+++|++|++++|.+.+..+  +.++++|++|+++++.+.+..+  +.++++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            345666666666655542  25556666666666666653332  5666666666666666553222  44444443333


Q ss_pred             ecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCC
Q 039967           86 LCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLK  165 (445)
Q Consensus        86 l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  165 (445)
                      +++              |.+... +. +..+++|++|++++|.+.. .+ .+..+++|++|.+.+ .+. . ...+.+++
T Consensus       119 L~~--------------n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~-~-~~~~~~l~  177 (466)
T 1o6v_A          119 LFN--------------NQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVT-D-LKPLANLT  177 (466)
T ss_dssp             CCS--------------SCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCC-C-CGGGTTCT
T ss_pred             CCC--------------CCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-ccc-C-chhhccCC
Confidence            333              222222 21 5555666666666655553 22 355556666665542 222 1 11255555


Q ss_pred             CcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEee
Q 039967          166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY  245 (445)
Q Consensus       166 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  245 (445)
                      +|+.|++++|.+...  ..+..+++|++|++++|.+....+  +..+++|+++++++|.+...  ..+..+++|+.|+++
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  251 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence            666666665554422  224555555555555555543322  34455555555555544321  234444555555555


Q ss_pred             CccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc
Q 039967          246 NNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  325 (445)
                      +|.+....+  +..+++|++|++++|.+....+  +..+++|+.|++++|.+.+..+  +..                  
T Consensus       252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------------------  307 (466)
T 1o6v_A          252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------------------  307 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------------------
T ss_pred             CCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------------------
Confidence            554443222  3444445555554444442221  3444444444444444432211  233                  


Q ss_pred             cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCcee
Q 039967          326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYL  405 (445)
Q Consensus       326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  405 (445)
                       +++|+.|++++|++.+..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+..|  +..+++|+.|
T Consensus       308 -l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          308 -LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             -CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             -CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence             3344444444444443322  55677788888888877644  356777788888888887775554  6677788888


Q ss_pred             ecCCCcccc
Q 039967          406 DLSTNKLKS  414 (445)
Q Consensus       406 ~l~~~~~~~  414 (445)
                      ++++|++++
T Consensus       381 ~l~~n~~~~  389 (466)
T 1o6v_A          381 GLNDQAWTN  389 (466)
T ss_dssp             ECCCEEEEC
T ss_pred             eccCCcccC
Confidence            888887774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.9e-36  Score=287.77  Aligned_cols=360  Identities=22%  Similarity=0.178  Sum_probs=228.3

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCC-CCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSG-VIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA   85 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   85 (445)
                      ++|++|++++|.+..+.+..+.++++|++|++++|.+.. ..+..|.++++|++|++++|.+.+..|..+.++++|++++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            579999999999998888899999999999999998863 4567899999999999999999877788888888666665


Q ss_pred             ecCcccccccceEEecCCcCCCCcccc--ccCCCCCcEEEccCCcccCCCCcc-ccCCCCCceEEeccCccccccCcccc
Q 039967           86 LCHNYFVCNLANFYLNNNSLFNSIPLV--LGNLNSLSTMDLSQNQFSGSIPLS-LGNLSNLDKLYLYSNSFSGSIPSIIG  162 (445)
Q Consensus        86 l~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~  162 (445)
                      +++|              .+.+..+..  +..+++|++|++++|.++...|.. +..+++|++|++++|.+....+..+.
T Consensus       110 L~~n--------------~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  175 (455)
T 3v47_A          110 LTQC--------------NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL  175 (455)
T ss_dssp             CTTS--------------CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred             CCCC--------------CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence            5554              334333333  777888888888888887665655 77888888888888887766666666


Q ss_pred             CC--CCcCEEeCCCcccccccccc--------ccCCCCCcEEEccCCccCCCCCccccCC---CCcCEEEccCccccCCC
Q 039967          163 NL--KSLLQLDLSENQLIGSIPLS--------FGNLSSLTLMSLFNNSLSGSLPPILGNL---KSLSALGLHINQLSGVI  229 (445)
Q Consensus       163 ~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~  229 (445)
                      .+  ++|+.|+++++.+....+..        +..+++|++|++++|.+....+..+...   ++|+.++++++......
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS  255 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred             ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence            55  67888888888766433222        2345677777777777664444433322   66777777766543211


Q ss_pred             CccccCCCcccEEEeeCccccccChhhhc--ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccc
Q 039967          230 PSSIGNLSSLRALYLYNNGLYSFVPEEIR--YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN  307 (445)
Q Consensus       230 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  307 (445)
                      . ....             +.......+.  ..++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..
T Consensus       256 ~-~~~~-------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  321 (455)
T 3v47_A          256 F-GHTN-------------FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG  321 (455)
T ss_dssp             T-TCCS-------------SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             c-chhh-------------hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC
Confidence            0 0000             0000011111  2246677777777666555666666677777777777766555666666


Q ss_pred             cCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCe
Q 039967          308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ  387 (445)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  387 (445)
                      +++|+.|++++|.+.+                   ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus       322 l~~L~~L~Ls~N~l~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGS-------------------IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             CTTCCEEECCSSCCCE-------------------ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cccCCEEECCCCccCC-------------------cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            6666666666665532                   222333444444444444444444444444444445555554444


Q ss_pred             eecccchhhcCCccCceeecCCCccc
Q 039967          388 LSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       388 ~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      +.+..+..+..+++|+.|++++|++.
T Consensus       383 l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          383 LKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccCCHhHhccCCcccEEEccCCCcc
Confidence            44333333444444555555544444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.7e-35  Score=276.40  Aligned_cols=390  Identities=25%  Similarity=0.296  Sum_probs=187.0

Q ss_pred             CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCC-------------cEEEecCcccccCC
Q 039967            5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL-------------RILYFDVNQLHGSI   71 (445)
Q Consensus         5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~   71 (445)
                      +.++|++|+++++.+. ..|..++++++|++|++++|.+.+..|..++.+.+|             ++|+++++.+.+ +
T Consensus         9 ~~~~L~~L~l~~n~l~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCchh-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            4578999999999985 447779999999999999999888888888887765             899999888774 3


Q ss_pred             CcccccCCCccEEEecCcccc------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCce
Q 039967           72 PLEIGQLSLINVLALCHNYFV------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDK  145 (445)
Q Consensus        72 ~~~~~~l~~L~~l~l~~~~~~------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  145 (445)
                      |..   .++|++++++++.+.      .+|+++++++|.+.+ ++.   ..++|++|++++|.++. +| .+..+++|++
T Consensus        87 p~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~  157 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKI  157 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             CCC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence            332   256667766666543      356666666665543 111   01456666666666653 44 3666666666


Q ss_pred             EEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967          146 LYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL  225 (445)
Q Consensus       146 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  225 (445)
                      |++++|.+. ..|..   .++|++|++++|.+.. .| .+..+++|++|++++|.+.. .|..   .++|+++++++|.+
T Consensus       158 L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          158 IDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL  227 (454)
T ss_dssp             EECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC
T ss_pred             EECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC
Confidence            666666655 23332   2466666666666553 33 35666666666666666553 2221   14566666666655


Q ss_pred             cCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccc
Q 039967          226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF  305 (445)
Q Consensus       226 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  305 (445)
                      . ..+ .+..+++|++|++++|.+... +.   .+++|+.|++++|.+... +.   .+++|+.|++++|.+.+. +.  
T Consensus       228 ~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l-~~--  294 (454)
T 1jl5_A          228 E-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL-SE--  294 (454)
T ss_dssp             S-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE-SC--
T ss_pred             C-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcc-cC--
Confidence            5 223 355566666666666655542 21   125566666666655532 21   125566666666655531 11  


Q ss_pred             cccCccceeeccCccccccccC-CCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEcc
Q 039967          306 KNLTSVERVLLNQNNLSGKVNV-PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN  384 (445)
Q Consensus       306 ~~~~~L~~L~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  384 (445)
                       ..++|+.|++++|.+.+.... ++|+.|++++|++.+ .+..   +++|++|++++|.++ ..|.   .+++|++|+++
T Consensus       295 -~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~  365 (454)
T 1jl5_A          295 -LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVE  365 (454)
T ss_dssp             -CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             -cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence             114566666666666554444 356666666666553 2222   355666666666655 2333   34566666666


Q ss_pred             CCeeec--ccchhhcCC-------------ccCceeecCCCcccc--ccCccccCCCCccEEeCCCCcccccCCCC
Q 039967          385 LNQLSG--GMPLELGSL-------------IELQYLDLSTNKLKS--SIPKSIGNLLRLCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       385 ~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  443 (445)
                      +|++.+  .+|..+..+             ++|+.|++++|++++  ..|      .+++.+.+.+|.+.+.+|.|
T Consensus       366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             SSCCSSCCCCCTTCCEEECCC-------------------------------------------------------
T ss_pred             CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccC
Confidence            666654  344444444             455666666665553  111      23445555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-34  Score=274.61  Aligned_cols=373  Identities=26%  Similarity=0.299  Sum_probs=255.4

Q ss_pred             CCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc-------------cEEEecCcccc---
Q 039967           29 NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI-------------NVLALCHNYFV---   92 (445)
Q Consensus        29 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~l~l~~~~~~---   92 (445)
                      +.++|+.|+++++.+ +..|.+++++++|++|++++|.+.+..|..+.++..|             ++++++++.+.   
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            367899999999999 5889999999999999999999999999999988876             88888877543   


Q ss_pred             ---cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCE
Q 039967           93 ---CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ  169 (445)
Q Consensus        93 ---~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  169 (445)
                         ++|+++++++|.+.+ +|.   .+++|++|++++|.++. ++..   .++|++|++++|.+.. .| .+.++++|++
T Consensus        88 ~~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~  157 (454)
T 1jl5_A           88 ELPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI  157 (454)
T ss_dssp             SCCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             CCcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence               578899998888775 554   24788999999888873 2221   2689999999998874 56 5888999999


Q ss_pred             EeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccc
Q 039967          170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL  249 (445)
Q Consensus       170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  249 (445)
                      |++++|.+.. .|..   .++|++|++++|.+.. .+ .+..+++|+++++++|.+.. .+.   ..++|++|++++|.+
T Consensus       158 L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          158 IDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGNNIL  227 (454)
T ss_dssp             EECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCC
T ss_pred             EECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECcCCcC
Confidence            9999998774 4443   3589999999998885 45 57888999999999998764 222   225899999999988


Q ss_pred             cccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc-CC
Q 039967          250 YSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VP  328 (445)
Q Consensus       250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~  328 (445)
                      ... + .+..+++|++|++++|.+... +.   .+++|++|++++|.+.+ ++..   .++|+.|++++|.+.+... .+
T Consensus       228 ~~l-p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~  297 (454)
T 1jl5_A          228 EEL-P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPP  297 (454)
T ss_dssp             SSC-C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCT
T ss_pred             Ccc-c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCC
Confidence            753 4 377888999999999988743 22   24789999999998874 4432   3789999999998887543 36


Q ss_pred             CcceEEcccCccccCCCccccCC-CCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeec
Q 039967          329 KLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL  407 (445)
Q Consensus       329 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  407 (445)
                      +|+.|++++|++.+.     ..+ ++|++|++++|.+++ .|..   +++|+.|++++|.+. .+|.   .+++|+.|++
T Consensus       298 ~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L  364 (454)
T 1jl5_A          298 NLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHV  364 (454)
T ss_dssp             TCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             cCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEEC
Confidence            899999999988752     223 589999999999985 4433   589999999999998 5565   4789999999


Q ss_pred             CCCcccc--ccCccccCC-------------CCccEEeCCCCcccc--cCCCCCC
Q 039967          408 STNKLKS--SIPKSIGNL-------------LRLCYLDLSNNQFGH--KILVELE  445 (445)
Q Consensus       408 ~~~~~~~--~~~~~~~~~-------------~~L~~l~l~~~~~~~--~~~~~~~  445 (445)
                      ++|++++  ..|..+..+             ++|++|++++|++.+  .+|.+++
T Consensus       365 ~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~  419 (454)
T 1jl5_A          365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE  419 (454)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred             CCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence            9999987  567777777             899999999999998  8998763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.9e-34  Score=283.08  Aligned_cols=410  Identities=23%  Similarity=0.189  Sum_probs=250.9

Q ss_pred             CCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccc----------cccceEEe
Q 039967           31 SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFV----------CNLANFYL  100 (445)
Q Consensus        31 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~----------~~L~~l~l  100 (445)
                      +++++|+|++|.++...+.+|.++++|++|++++|.+....+.+|.++++|+++++++|.+.          .+|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47999999999999888889999999999999999998777778999998888877776442          34555555


Q ss_pred             cCCcCCCCccccccCCCCCcEEEccCCcccCC-CCccccCCCCCceEEeccCccccccCccccCCCCc----CEEeCCCc
Q 039967          101 NNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGS-IPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL----LQLDLSEN  175 (445)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~  175 (445)
                      ++|++.+..+..|+++++|++|++++|.++.. .|..+..+++|++|++++|.+....+..+..+.++    ..++++.+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            55554444444455555555555555554422 23444445555555555555443333333332222    23444444


Q ss_pred             cccccccccccCCCCCcEEEccCCccC-------------------------------CCCCcc----------------
Q 039967          176 QLIGSIPLSFGNLSSLTLMSLFNNSLS-------------------------------GSLPPI----------------  208 (445)
Q Consensus       176 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-------------------------------~~~~~~----------------  208 (445)
                      .+....+.. .....++.+.+.++...                               ......                
T Consensus       212 ~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            433221111 11112222222222110                               000000                


Q ss_pred             -----------ccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChh-------------------hhc
Q 039967          209 -----------LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE-------------------EIR  258 (445)
Q Consensus       209 -----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------~~~  258 (445)
                                 +.....++.+.+..+.+...  ..+.....++.+++.++.+......                   ...
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  368 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  368 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred             hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence                       01111222222222221111  1122233455555555443322111                   111


Q ss_pred             ccccccEEecccCccCCC--ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc------ccCCCc
Q 039967          259 YLTSLSELELCTNHLSGV--IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK------VNVPKL  330 (445)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~L  330 (445)
                      .+++|+.+++++|.+...  .+.......+++.+++..+... ..+..+..++.|+.+++.++.....      ..++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence            234445555544443311  1122233445555555555444 2334456677788887777654422      236788


Q ss_pred             ceEEcccCccccCCCccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCC
Q 039967          331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST  409 (445)
Q Consensus       331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  409 (445)
                      +.++++.+.+....+..+..++.+++|++++|.+. ...|..+..+++|+.|++++|++.+..|..|.++++|++|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            89999999998888888889999999999999754 45778899999999999999999988889999999999999999


Q ss_pred             CccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967          410 NKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL  444 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  444 (445)
                      |++++..+..|..+++|++|++++|++++..|+++
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            99998888899999999999999999998888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=276.32  Aligned_cols=296  Identities=23%  Similarity=0.191  Sum_probs=143.4

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      ++++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            44555555555544444445555555555555555444444445555555555555555443333334455555555555


Q ss_pred             CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCc
Q 039967          198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI  277 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  277 (445)
                      +|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            55554444444455555555555555544444444555555555555555555544444555555555555555554444


Q ss_pred             cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCCccccCCC
Q 039967          278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSP  352 (445)
Q Consensus       278 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~  352 (445)
                      +..+..+++|+.|++++|...+.++.......+|+.|++++|.+....     .+++|+.|++++|++....+..+..++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            444455555555555555443333332222334444444444333111     122233333333333333333445555


Q ss_pred             CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      +|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|++.
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            5555555555555444555555555555555555555333344455555555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.4e-35  Score=285.10  Aligned_cols=392  Identities=22%  Similarity=0.212  Sum_probs=272.5

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      +++++|++++|.+..+.+..+..+++|++|++++|.+.+..+.+|.++++|++|++++|.+. .+|..  .+++|+++++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            67899999999888887788899999999999999988777888888999999999999887 45555  7888999998


Q ss_pred             cCcccc-----------cccceEEecCCcCCCCccccccCCCCC--cEEEccCCcc--cCCCCcccc-------------
Q 039967           87 CHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNLNSL--STMDLSQNQF--SGSIPLSLG-------------  138 (445)
Q Consensus        87 ~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~-------------  138 (445)
                      ++|.+.           ++|++|++++|.+...   .+..+++|  +.|++++|.+  +...+..+.             
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            887653           5788899998887653   34444555  8899888877  544444443             


Q ss_pred             -------------CCCCCceEEeccCccc----cccCccccCCCCcCEEeCCCcccccc----ccccccCCCCCcEEEcc
Q 039967          139 -------------NLSNLDKLYLYSNSFS----GSIPSIIGNLKSLLQLDLSENQLIGS----IPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       139 -------------~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~  197 (445)
                                   .+++|+.+++.+|...    ......+..+++|+.+++.++.+.+.    .+.. ...++|++|++.
T Consensus       206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~  284 (562)
T 3a79_B          206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY  284 (562)
T ss_dssp             SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred             ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence                         3557777777776310    01223456677888887776654422    1111 223588888888


Q ss_pred             CCccCCCCCccc-----cCCCCcCEEEccCccccCCCC-cccc---CCCcccEEEeeCccccccChhhhcccccccEEec
Q 039967          198 NNSLSGSLPPIL-----GNLKSLSALGLHINQLSGVIP-SSIG---NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL  268 (445)
Q Consensus       198 ~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  268 (445)
                      +|.+.+..|..+     ..++.|+.+++..+.+  ..+ ..+.   ...+|+.|++++|.+....  ....+++|++|++
T Consensus       285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  360 (562)
T 3a79_B          285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence            888776666555     4445555555554443  111 1111   1246788888877765432  1146677888888


Q ss_pred             ccCccCCCccccccccCCccEEEcCCCcccCCC--CccccccCccceeeccCccccc-c-----ccCCCcceEEcccCcc
Q 039967          269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI--PKSFKNLTSVERVLLNQNNLSG-K-----VNVPKLGTFIISVNNI  340 (445)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~-----~~~~~L~~L~l~~~~~  340 (445)
                      ++|.+.+..+..+..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+ .     ..+++|+.|++++|++
T Consensus       361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            888777666667777788888888888777432  3456777888888888887765 2     2357788888888887


Q ss_pred             ccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh-hcCCccCceeecCCCccc
Q 039967          341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  413 (445)
                      ++..+..+.  ++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|++.
T Consensus       441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence            655444443  67888888888887 55555568888888888888887 45544 778888888888888776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-33  Score=268.35  Aligned_cols=353  Identities=16%  Similarity=0.182  Sum_probs=208.2

Q ss_pred             cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967            4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV   83 (445)
Q Consensus         4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   83 (445)
                      +++++|++|++++|.+.++ + .+..+++|++|++++|.+.+. +  +..+++|++|++++|.+.+. +  +.++++|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            4456677777777666655 2 466667777777777766643 2  56666777777776666542 2  444444333


Q ss_pred             EEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccC
Q 039967           84 LALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN  163 (445)
Q Consensus        84 l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  163 (445)
                      +++              ++|.+.+ ++  +..+++|++|++++|.++..   .+..+++|++|++.+|......  .+..
T Consensus       111 L~L--------------~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~  168 (457)
T 3bz5_A          111 LNC--------------DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTP  168 (457)
T ss_dssp             EEC--------------CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTT
T ss_pred             EEC--------------CCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--cccc
Confidence            333              3333332 22  55666666666666666542   2556666666666666432122  3555


Q ss_pred             CCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEE
Q 039967          164 LKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY  243 (445)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  243 (445)
                      +++|+.|++++|.+.. .|  +..+++|+.|.+++|.++..   .+..+++|+.+++++|.+... +  +..+++|+.|+
T Consensus       169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~  239 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFD  239 (457)
T ss_dssp             CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEE
T ss_pred             CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEE
Confidence            6666666666666553 23  55666666666666666543   255566666666666666532 2  55566666666


Q ss_pred             eeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc
Q 039967          244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG  323 (445)
Q Consensus       244 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  323 (445)
                      +++|.+....   ...+++|+.|+++++              +|+.+++++|...+.++  +..+++|+.|++++|...+
T Consensus       240 l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          240 CSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             CCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred             eeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence            6666665532   233445555554433              34445555555443333  3456777777777775432


Q ss_pred             ccc--CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCcc
Q 039967          324 KVN--VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE  401 (445)
Q Consensus       324 ~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  401 (445)
                      ...  .++|+.++             +..+++|++|++++|.+++.   .+.++++|+.|++++|++.+        ++.
T Consensus       301 ~l~~~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~  356 (457)
T 3bz5_A          301 LLDCQAAGITELD-------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSS  356 (457)
T ss_dssp             EEECTTCCCSCCC-------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTT
T ss_pred             eeccCCCcceEec-------------hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccc
Confidence            221  12222222             44557788888888888753   26778888888888887763        346


Q ss_pred             CceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967          402 LQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       402 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  443 (445)
                      |+.|++++|.+.+.     ..+..|+.+++++|+++|++|..
T Consensus       357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            67777777777643     34556777788888888888754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.9e-33  Score=264.99  Aligned_cols=326  Identities=30%  Similarity=0.426  Sum_probs=267.6

Q ss_pred             ccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCcc
Q 039967            3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN   82 (445)
Q Consensus         3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   82 (445)
                      +..+++|++|++++|.+..+++  +..+++|++|++++|.+.+..+  +.++++|++|++++|.+.+. + .+.++++|+
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~  137 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-D-PLKNLTNLN  137 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCS
T ss_pred             hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-h-HHcCCCCCC
Confidence            5678999999999999988754  8999999999999999985544  89999999999999998854 3 277888777


Q ss_pred             EEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCcccc
Q 039967           83 VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIG  162 (445)
Q Consensus        83 ~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  162 (445)
                      ++++++|.+              .. ++ .+..+++|++|++.+ .+...  ..+..+++|++|++++|.+.. . ..+.
T Consensus       138 ~L~l~~n~l--------------~~-~~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~  196 (466)
T 1o6v_A          138 RLELSSNTI--------------SD-IS-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD-I-SVLA  196 (466)
T ss_dssp             EEEEEEEEE--------------CC-CG-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGG
T ss_pred             EEECCCCcc--------------CC-Ch-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC-C-hhhc
Confidence            666665543              32 33 488999999999974 44422  248899999999999999873 2 4578


Q ss_pred             CCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEE
Q 039967          163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL  242 (445)
Q Consensus       163 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  242 (445)
                      .+++|++|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....  .+..+++|+.|
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L  270 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL  270 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--hhhcCCCCCEE
Confidence            89999999999999875544  67899999999999998753  45788999999999999987443  37889999999


Q ss_pred             EeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccc
Q 039967          243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS  322 (445)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  322 (445)
                      ++++|.+....+  +..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence            999999887544  7789999999999999885443  7888999999999999886544  567777777777777654


Q ss_pred             ccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeec
Q 039967          323 GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG  390 (445)
Q Consensus       323 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  390 (445)
                                         +.  ..+..+++|++|++++|.+.+..|  +..+++|+.|++++|++.+
T Consensus       345 -------------------~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          345 -------------------DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -------------------CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             -------------------Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence                               22  357788999999999999987776  8899999999999999984

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=271.45  Aligned_cols=321  Identities=21%  Similarity=0.227  Sum_probs=225.4

Q ss_pred             cEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccc
Q 039967           34 QYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVL  113 (445)
Q Consensus        34 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~  113 (445)
                      +.++.++..+. ..|..+  .++++.|+++++.+....+..+.++++|+++++              ++|.+....+..|
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--------------~~n~i~~~~~~~~   76 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--------------NENIVSAVEPGAF   76 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--------------TTSCCCEECTTTT
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEEC--------------CCCccCEeChhhh
Confidence            45666666666 444444  257888888888877666666777665444444              3444455556667


Q ss_pred             cCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcE
Q 039967          114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTL  193 (445)
Q Consensus       114 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  193 (445)
                      .++++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            77777888888777777555556777777777777777776566667777777777777777776666666777777777


Q ss_pred             EEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCcc
Q 039967          194 MSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL  273 (445)
Q Consensus       194 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  273 (445)
                      |++.+|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|......+.......+|+.|++++|.+
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  236 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL  236 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence            77777777755555567777777777777777655556677777777777777665443333333344677777777776


Q ss_pred             CCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCC
Q 039967          274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPK  353 (445)
Q Consensus       274 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  353 (445)
                      .......+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.                   +....+..+..+++
T Consensus       237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------------l~~~~~~~~~~l~~  297 (477)
T 2id5_A          237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-------------------LAVVEPYAFRGLNY  297 (477)
T ss_dssp             CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-------------------CSEECTTTBTTCTT
T ss_pred             cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-------------------cceECHHHhcCccc
Confidence            65444556666777777777776665555556666666666665554                   44556678889999


Q ss_pred             CcEEECCCCccccccchhhccccCCCEEEccCCeeec
Q 039967          354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG  390 (445)
Q Consensus       354 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  390 (445)
                      |++|++++|.+++..+..|..+++|+.|++++|++.+
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            9999999999998777888999999999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.8e-32  Score=248.86  Aligned_cols=285  Identities=29%  Similarity=0.392  Sum_probs=165.3

Q ss_pred             ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT  192 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  192 (445)
                      +..+++|++|++++|.++.. +. +..+++|++|++++|.+.. . ..+..+++|++|++++|.+... +. +..+++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~  135 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY  135 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred             hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence            44555555555555555432 21 5555555555555555442 1 2345555555555555554422 22 44555555


Q ss_pred             EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967          193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH  272 (445)
Q Consensus       193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  272 (445)
                      .|++++|..... ...+..+++|+.+++++|.+....  .+..+++|+.|++++|.+....+  +..+++|+.+++++|.
T Consensus       136 ~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          136 SLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             EEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             EEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCccccccc--ccCCCccceeecccCC
Confidence            555555533322 222444455555555554443221  13444455555555544443211  3344444455554444


Q ss_pred             cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967          273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP  352 (445)
Q Consensus       273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  352 (445)
                      +....+  +..+++|++|++++|.+.+..+  +..                   +++|+.|++++|.+...  ..+..++
T Consensus       211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~-------------------l~~L~~L~l~~n~l~~~--~~~~~l~  265 (347)
T 4fmz_A          211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LAN-------------------LSQLTWLEIGTNQISDI--NAVKDLT  265 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT-------------------CTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             CCCCch--hhcCCcCCEEEccCCccCCCcc--hhc-------------------CCCCCEEECCCCccCCC--hhHhcCC
Confidence            432221  3444444444444444442211  333                   44555555555555432  4577889


Q ss_pred             CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS  432 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  432 (445)
                      +|++|++++|.+++.  ..+..+++|+.|++++|++.+..+..++.+++|+.|++++|++++..+  +..+++|++|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            999999999998854  357889999999999999987888889999999999999999986555  8889999999999


Q ss_pred             CCccc
Q 039967          433 NNQFG  437 (445)
Q Consensus       433 ~~~~~  437 (445)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            99986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-32  Score=255.82  Aligned_cols=308  Identities=21%  Similarity=0.208  Sum_probs=175.5

Q ss_pred             ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967           94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS  173 (445)
Q Consensus        94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  173 (445)
                      +++.++++++.+....+..+..+++|++|+++++.++...+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            44444444444443333345556666666666666654444556666666666666666654445555666666666666


Q ss_pred             CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967          174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV  253 (445)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  253 (445)
                      +|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+... 
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-  201 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-  201 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-
Confidence            6665533333345566666666666666554455555566666666666655432   234445556666655544331 


Q ss_pred             hhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceE
Q 039967          254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF  333 (445)
Q Consensus       254 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L  333 (445)
                          ...++|++|++++|.+.....   ...++|+.|++++|.+.+.  ..+..+++|++|                   
T Consensus       202 ----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-------------------  253 (390)
T 3o6n_A          202 ----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEV-------------------  253 (390)
T ss_dssp             ----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEE-------------------
T ss_pred             ----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEE-------------------
Confidence                223455555555555542211   1224555555555555432  234444444444                   


Q ss_pred             EcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       334 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      ++++|.+.+..+..+..+++|++|++++|.+++ .+..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             ECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence            455555544455666677777777777777763 3445556777777777777776 45555666777777777777776


Q ss_pred             cccCccccCCCCccEEeCCCCcccc
Q 039967          414 SSIPKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       414 ~~~~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      ..   .+..+++|++|++++|+|..
T Consensus       332 ~~---~~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          332 TL---KLSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CC---CCCTTCCCSEEECCSSCEEH
T ss_pred             ee---CchhhccCCEEEcCCCCccc
Confidence            43   25566777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.6e-31  Score=242.24  Aligned_cols=308  Identities=26%  Similarity=0.438  Sum_probs=248.2

Q ss_pred             cccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcc
Q 039967           50 EIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQF  129 (445)
Q Consensus        50 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  129 (445)
                      .+..+++|+.|+++++.+.. .+ .+..+++|+++++              ++|.+.. ++. +..+++|++|++++|.+
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l--------------~~n~i~~-~~~-~~~l~~L~~L~L~~n~i  100 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNL--------------NGNQITD-ISP-LSNLVKLTNLYIGTNKI  100 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEEC--------------CSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEc--------------cCCcccc-chh-hhcCCcCCEEEccCCcc
Confidence            45578999999999998873 33 4677775555554              4455443 333 89999999999999999


Q ss_pred             cCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccc
Q 039967          130 SGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL  209 (445)
Q Consensus       130 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  209 (445)
                      +. . ..+..+++|++|++++|.+.. .+. +..+++|++|++++|...... ..+..+++|++|.+.++.+....+  +
T Consensus       101 ~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~  173 (347)
T 4fmz_A          101 TD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--I  173 (347)
T ss_dssp             CC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             cC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--h
Confidence            85 3 369999999999999999874 333 889999999999999765444 448999999999999999875433  7


Q ss_pred             cCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccE
Q 039967          210 GNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL  289 (445)
Q Consensus       210 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  289 (445)
                      ..+++|+++++++|.+....  .+..+++|+.+++++|.+....+  +..+++|++|++++|.+....+  +..+++|++
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~  247 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW  247 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ccCCCCCEEEccCCcccccc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCE
Confidence            88999999999999887443  37789999999999999887543  7788999999999999885543  888999999


Q ss_pred             EEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccc
Q 039967          290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP  369 (445)
Q Consensus       290 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  369 (445)
                      |++++|.+.+.  ..+..+++|+.|++++|.+.                   + . ..+..+++|++|++++|.+++..+
T Consensus       248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-------------------~-~-~~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-------------------D-I-SVLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-------------------C-C-GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred             EECCCCccCCC--hhHhcCCCcCEEEccCCccC-------------------C-C-hhhcCCCCCCEEECcCCcCCCcCh
Confidence            99999988743  45667777777777777654                   2 1 356778999999999999998888


Q ss_pred             hhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          370 VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       370 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      ..+..+++|+.|++++|++.+..+  +..+++|+.|++++|.++
T Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            889999999999999999985545  778999999999999886

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-31  Score=249.82  Aligned_cols=269  Identities=23%  Similarity=0.238  Sum_probs=183.7

Q ss_pred             ccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCC
Q 039967          109 IPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL  188 (445)
Q Consensus       109 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  188 (445)
                      .+..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+
T Consensus        85 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  164 (390)
T 3o6n_A           85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT  164 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred             ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence            33456666677777777777665556666777777777777776663333345667777777777777665555566677


Q ss_pred             CCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEec
Q 039967          189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL  268 (445)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  268 (445)
                      ++|++|++++|.+...   .+..++.|+.++++++.+.     .+...++|+.|++++|.+.....   ...++|+.|++
T Consensus       165 ~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-----~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l  233 (390)
T 3o6n_A          165 TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRG---PVNVELTILKL  233 (390)
T ss_dssp             TTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-----EEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEEC
T ss_pred             CCCCEEECCCCcCCcc---ccccccccceeeccccccc-----ccCCCCcceEEECCCCeeeeccc---cccccccEEEC
Confidence            7777777777766533   2455677777777777654     23344577888888877765422   22467888888


Q ss_pred             ccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccc
Q 039967          269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI  348 (445)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  348 (445)
                      ++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+                    .+...
T Consensus       234 ~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------------~~~~~  291 (390)
T 3o6n_A          234 QHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--------------------LNLYG  291 (390)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--------------------EECSS
T ss_pred             CCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--------------------cCccc
Confidence            88887643  467778888899998888886677788888888888888877642                    22233


Q ss_pred             cCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccc
Q 039967          349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS  414 (445)
Q Consensus       349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  414 (445)
                      ..+++|++|++++|.+. ..|..+..+++|+.|++++|++... +  +..+++|+.|++++|++..
T Consensus       292 ~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            45677888888888776 4555667777888888888877633 2  5567778888888887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-31  Score=262.72  Aligned_cols=308  Identities=21%  Similarity=0.210  Sum_probs=183.3

Q ss_pred             ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967           94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS  173 (445)
Q Consensus        94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  173 (445)
                      +++.++++++.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|+++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            44455555555444444445666666666666666665555566666666666666666655455555666666666666


Q ss_pred             CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967          174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV  253 (445)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  253 (445)
                      +|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+..  
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~--  206 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST--  206 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE--
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc--
Confidence            6666543333345666666666666666655555566666666666666655432   23445556666666655443  


Q ss_pred             hhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceE
Q 039967          254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF  333 (445)
Q Consensus       254 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L  333 (445)
                         +...++|+.|++++|.+......   ..++|+.|++++|.+.+  +..+..+++|+.|                   
T Consensus       207 ---l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L-------------------  259 (597)
T 3oja_B          207 ---LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEV-------------------  259 (597)
T ss_dssp             ---EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEE-------------------
T ss_pred             ---ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEE-------------------
Confidence               12234556666666555422211   12455566666655543  2334444444444                   


Q ss_pred             EcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       334 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      ++++|.+.+..+..+..+++|++|++++|.+++ .|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus       260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             ECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence            555555555556667777777777777777764 4555566777777777777777 55666677777778888777776


Q ss_pred             cccCccccCCCCccEEeCCCCcccc
Q 039967          414 SSIPKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       414 ~~~~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      ..   .+..+++|++|++++|+|.+
T Consensus       338 ~~---~~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          338 TL---KLSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CC---CCCTTCCCSEEECCSSCEEH
T ss_pred             Cc---ChhhcCCCCEEEeeCCCCCC
Confidence            43   25566777777888777764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=3.2e-30  Score=244.92  Aligned_cols=327  Identities=19%  Similarity=0.207  Sum_probs=167.9

Q ss_pred             cccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCc
Q 039967           25 PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNS  104 (445)
Q Consensus        25 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~  104 (445)
                      ..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. +  +..+++|++++              +++|.
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~--------------Ls~N~   96 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLA--------------CDSNK   96 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEE--------------CCSSC
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEE--------------CcCCC
Confidence            3455566666777666666643 3 466666666666666666532 1  33444333332              22233


Q ss_pred             CCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccc
Q 039967          105 LFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS  184 (445)
Q Consensus       105 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  184 (445)
                      +.+. +  ++.+++|++|++++|.++.. +  +..+++|++|++++|.+.. .  .+..+++|+.|++++|......  .
T Consensus        97 l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~  165 (457)
T 3bz5_A           97 LTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--D  165 (457)
T ss_dssp             CSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--C
T ss_pred             Ccee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--c
Confidence            2321 1  44555555555555555432 2  4555555555555555542 1  1444555555555555322222  2


Q ss_pred             ccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhccccccc
Q 039967          185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS  264 (445)
Q Consensus       185 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  264 (445)
                      +..+++|+.|++++|.++. .+  +..+++|+.+++++|.+                        ...   .+..+++|+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l------------------------~~~---~l~~l~~L~  215 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI------------------------TKL---DLNQNIQLT  215 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC------------------------SCC---CCTTCTTCS
T ss_pred             cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC------------------------Cee---ccccCCCCC
Confidence            3444555555555554443 12  34444455555544444                        332   133444455


Q ss_pred             EEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCC
Q 039967          265 ELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESI  344 (445)
Q Consensus       265 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~  344 (445)
                      +|++++|.+... +  +..+++|++|++++|.+.+..   ...+++|+.+.++++         +|+.+++++|...+..
T Consensus       216 ~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          216 FLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------DLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             EEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------CCSCCCCTTCTTCCEE
T ss_pred             EEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------CCCEEECCCCccCCcc
Confidence            555555544431 1  344455555555555554322   223444444444433         2334444444433222


Q ss_pred             CccccCCCCCcEEECCCCccccccch--------hhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccccc
Q 039967          345 PPEIGDSPKLQVLDLSSNNIVGEIPV--------QLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI  416 (445)
Q Consensus       345 ~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  416 (445)
                      +  ...|++|+.|++++|...+..|.        .+.++++|+.|++++|++.+.   .++.+++|+.|++++|++.+  
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--  353 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--  353 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--
T ss_pred             c--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--
Confidence            2  23456666666666654333332        134457888888888888753   37778888888888888874  


Q ss_pred             CccccCCCCccEEeCCCCccccc
Q 039967          417 PKSIGNLLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       417 ~~~~~~~~~L~~l~l~~~~~~~~  439 (445)
                            ++.|..+.+.+|.+.|.
T Consensus       354 ------l~~L~~L~l~~n~l~g~  370 (457)
T 3bz5_A          354 ------FSSVGKIPALNNNFEAE  370 (457)
T ss_dssp             ------CTTGGGSSGGGTSEEEE
T ss_pred             ------ccccccccccCCcEEec
Confidence                  24566667777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.9e-30  Score=255.82  Aligned_cols=309  Identities=22%  Similarity=0.238  Sum_probs=197.0

Q ss_pred             CCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCC
Q 039967           54 LNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSI  133 (445)
Q Consensus        54 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  133 (445)
                      +.+++.++++++.+....+..+..++.|+.+++              ++|.+....+..+..+++|++|++++|.++...
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L--------------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  115 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--------------NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP  115 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEEC--------------TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC--------------CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence            345666666666555433333455554333333              333334444456677777777777777777666


Q ss_pred             CccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCC
Q 039967          134 PLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLK  213 (445)
Q Consensus       134 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~  213 (445)
                      +..|..+++|++|++++|.+....+..|.++++|++|++++|.+....|..+..+++|++|++++|.+...   .+..++
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~  192 (597)
T 3oja_B          116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP  192 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCT
T ss_pred             HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhh
Confidence            66677777777777777777644444456777777777777777666666677777777777777776643   245567


Q ss_pred             CcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcC
Q 039967          214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC  293 (445)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  293 (445)
                      .|+.+++++|.+.     .+...++|+.|++++|.+.......   .++|+.|++++|.+..  +..+..+++|+.|+++
T Consensus       193 ~L~~L~l~~n~l~-----~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls  262 (597)
T 3oja_B          193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLS  262 (597)
T ss_dssp             TCSEEECCSSCCS-----EEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECC
T ss_pred             hhhhhhcccCccc-----cccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECC
Confidence            7777777777654     2344567888888887776543222   3578888888888764  3567778888888888


Q ss_pred             CCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhc
Q 039967          294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLG  373 (445)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  373 (445)
                      +|.+.+..+..|..+++|+.|++++|.+.+.                    +..+..+++|++|++++|.+. .+|..+.
T Consensus       263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--------------------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~  321 (597)
T 3oja_B          263 YNELEKIMYHPFVKMQRLERLYISNNRLVAL--------------------NLYGQPIPTLKVLDLSHNHLL-HVERNQP  321 (597)
T ss_dssp             SSCCCEEESGGGTTCSSCCEEECTTSCCCEE--------------------ECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             CCccCCCCHHHhcCccCCCEEECCCCCCCCC--------------------CcccccCCCCcEEECCCCCCC-ccCcccc
Confidence            8888877777888888888888888776522                    222334455666666666655 3444455


Q ss_pred             cccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          374 KLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       374 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      .+++|+.|++++|.+.+.   .+..+++|+.|++++|++.
T Consensus       322 ~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             HHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred             cCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence            556666666666655422   2444556666666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.9e-29  Score=228.65  Aligned_cols=288  Identities=20%  Similarity=0.253  Sum_probs=203.3

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      .++.++++++.++ .+|..+.  +++++|++++|.+....+..|.++++|++|++++|.+....|..+..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5677777777766 4444442  577777777777765555667777777777777777776666677777777777777


Q ss_pred             CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc--cChhhhcccccccEEecccCccCC
Q 039967          198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS--FVPEEIRYLTSLSELELCTNHLSG  275 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~  275 (445)
                      +|.+. ..|..+.  ++|++|++++|.+.......+..+++|+.|++++|.+..  ..+..+..+ +|++|++++|.+..
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            77776 3343333  677788887777765555567777788888888777643  344555555 78888888887764


Q ss_pred             CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967          276 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ  355 (445)
Q Consensus       276 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  355 (445)
                      . +..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+.                   ...+..+..+++|+
T Consensus       187 l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~~L~  244 (332)
T 2ft3_A          187 I-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-------------------MIENGSLSFLPTLR  244 (332)
T ss_dssp             C-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-------------------CCCTTGGGGCTTCC
T ss_pred             c-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-------------------cCChhHhhCCCCCC
Confidence            3 22222  67888888888887666667777777777777776554                   33444677788888


Q ss_pred             EEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcC------CccCceeecCCCccc--cccCccccCCCCcc
Q 039967          356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS------LIELQYLDLSTNKLK--SSIPKSIGNLLRLC  427 (445)
Q Consensus       356 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~  427 (445)
                      +|++++|.+. .+|..+..+++|+.|++++|++.+..+..+..      .++|+.|++++|++.  ...+.+|..+++|+
T Consensus       245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             EEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence            8888888887 66777888888888888888887555555544      357889999999876  45677888899999


Q ss_pred             EEeCCCCc
Q 039967          428 YLDLSNNQ  435 (445)
Q Consensus       428 ~l~l~~~~  435 (445)
                      .+++++|+
T Consensus       324 ~l~l~~n~  331 (332)
T 2ft3_A          324 AIQFGNYK  331 (332)
T ss_dssp             TEEC----
T ss_pred             hhhccccc
Confidence            99998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.9e-29  Score=227.89  Aligned_cols=288  Identities=22%  Similarity=0.274  Sum_probs=159.0

Q ss_pred             CcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccC
Q 039967          119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFN  198 (445)
Q Consensus       119 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  198 (445)
                      ++.++++++.++ .+|..+.  ++++.|++++|.+....+..|.++++|++|++++|.+....|..+..+++|++|++++
T Consensus        33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            444444444443 2232222  3444555555544433333444455555555555554444344445555555555555


Q ss_pred             CccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc--cChhhhcccccccEEecccCccCCC
Q 039967          199 NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS--FVPEEIRYLTSLSELELCTNHLSGV  276 (445)
Q Consensus       199 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~  276 (445)
                      |.+. ..+..+.  ++|++|++++|.+.......+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.+...
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            5444 2222221  455555555555543333445555555666655555432  3344555566666666666665532


Q ss_pred             ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcE
Q 039967          277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV  356 (445)
Q Consensus       277 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  356 (445)
                       +..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+.                   +..+..+..+++|++
T Consensus       187 -~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          187 -PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-------------------AVDNGSLANTPHLRE  244 (330)
T ss_dssp             -CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-------------------EECTTTGGGSTTCCE
T ss_pred             -Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-------------------eeChhhccCCCCCCE
Confidence             22221  56677777777666555556666666666666655443                   333345566677777


Q ss_pred             EECCCCccccccchhhccccCCCEEEccCCeeecccchhhcC------CccCceeecCCCcccc--ccCccccCCCCccE
Q 039967          357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS------LIELQYLDLSTNKLKS--SIPKSIGNLLRLCY  428 (445)
Q Consensus       357 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~  428 (445)
                      |++++|.+. ..|..+..+++|+.|++++|++.+..+..|..      .++++.|++++|++..  ..+..|..+..++.
T Consensus       245 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             EECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence            777777776 56666777777777777777776544444433      3677888888887753  44567788888888


Q ss_pred             EeCCCCc
Q 039967          429 LDLSNNQ  435 (445)
Q Consensus       429 l~l~~~~  435 (445)
                      +++++|+
T Consensus       324 l~L~~N~  330 (330)
T 1xku_A          324 VQLGNYK  330 (330)
T ss_dssp             EEC----
T ss_pred             EEecccC
Confidence            8888874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.4e-29  Score=226.69  Aligned_cols=268  Identities=23%  Similarity=0.269  Sum_probs=145.3

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      .+++|++++|.++...+..|..+++|++|++++|.+....|..|..+++|++|++++|.+. ..|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence            4444555544444333334444455555555554444333444444555555555554443 2222221  445555555


Q ss_pred             CCccCCCCCccccCCCCcCEEEccCccccC--CCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCC
Q 039967          198 NNSLSGSLPPILGNLKSLSALGLHINQLSG--VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSG  275 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  275 (445)
                      +|.+....+..+..+++|+++++++|.+..  ..+..+..+++|++|++++|.+..... .+  .++|++|++++|.+..
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GL--PPSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SC--CTTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cc--cccCCEEECCCCcCCc
Confidence            555443333344445555555555554432  233345555566666666655554322 11  1566666676666665


Q ss_pred             CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967          276 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ  355 (445)
Q Consensus       276 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  355 (445)
                      ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.                    ..+..+..+++|+
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------~lp~~l~~l~~L~  266 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--------------------KVPGGLADHKYIQ  266 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--------------------SCCTTTTTCSSCC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--------------------cCChhhccCCCcC
Confidence            55556666677777777777666555555666666666666666543                    3444566667777


Q ss_pred             EEECCCCccccccchhhcc------ccCCCEEEccCCeeec--ccchhhcCCccCceeecCCCc
Q 039967          356 VLDLSSNNIVGEIPVQLGK------LFSLNKLILNLNQLSG--GMPLELGSLIELQYLDLSTNK  411 (445)
Q Consensus       356 ~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~  411 (445)
                      +|++++|.+++..+..|..      .+.++.+++.+|++..  ..|..+..+++++.+++++|+
T Consensus       267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            7777777776555444432      3667777777777642  345667777788888887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.1e-29  Score=227.88  Aligned_cols=268  Identities=22%  Similarity=0.265  Sum_probs=186.0

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967          117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL  196 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  196 (445)
                      +++++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+. ..|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            46677777777766555556777777777777777766555666777777777777777665 3444333  67777777


Q ss_pred             cCCccCCCCCccccCCCCcCEEEccCccccC--CCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccC
Q 039967          197 FNNSLSGSLPPILGNLKSLSALGLHINQLSG--VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS  274 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  274 (445)
                      ++|.+....+..+..+++|+++++++|.+..  ..+..+..+ +|+.|++++|.+..... .+  .++|++|++++|.+.
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNKIQ  206 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCcCC
Confidence            7777765555556777777777777776642  334455555 77788888877766332 22  267888888888887


Q ss_pred             CCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCC
Q 039967          275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKL  354 (445)
Q Consensus       275 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  354 (445)
                      ...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.                    ..|..+..+++|
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------~lp~~l~~l~~L  266 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--------------------RVPAGLPDLKLL  266 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--------------------BCCTTGGGCTTC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--------------------ecChhhhcCccC
Confidence            666677788888888888888888666667777778887777777654                    445556777888


Q ss_pred             cEEECCCCccccccchhhcc------ccCCCEEEccCCeee--cccchhhcCCccCceeecCCCc
Q 039967          355 QVLDLSSNNIVGEIPVQLGK------LFSLNKLILNLNQLS--GGMPLELGSLIELQYLDLSTNK  411 (445)
Q Consensus       355 ~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~  411 (445)
                      ++|++++|.+++..+..|..      .++|+.|++.+|++.  +..+..+..+++|+.+++++|+
T Consensus       267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88888888887665555543      367888888888875  4566778888888888888875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-33  Score=270.85  Aligned_cols=303  Identities=18%  Similarity=0.150  Sum_probs=161.2

Q ss_pred             CCcEEEccCCcccC----CCCccccCCCCCceEEeccCccccccCccc-----cCCCCcCEEeCCCccccccc----ccc
Q 039967          118 SLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNSFSGSIPSII-----GNLKSLLQLDLSENQLIGSI----PLS  184 (445)
Q Consensus       118 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~----~~~  184 (445)
                      +|++|++++|.++.    .++..+..+++|++|++++|.+....+..+     ...++|++|++++|.+....    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            56677777666653    234556666666666666666542222211     12345666666666654322    333


Q ss_pred             ccCCCCCcEEEccCCccCCCCCcccc-----CCCCcCEEEccCccccCC----CCccccCCCcccEEEeeCccccccChh
Q 039967          185 FGNLSSLTLMSLFNNSLSGSLPPILG-----NLKSLSALGLHINQLSGV----IPSSIGNLSSLRALYLYNNGLYSFVPE  255 (445)
Q Consensus       185 l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~  255 (445)
                      +..+++|++|++++|.+.......+.     ..++|++|++++|.+...    .+..+..+++|++|++++|.+......
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            44455666666666554422111111     133555555555544321    122233344455555554443321100


Q ss_pred             hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCC----CCccccccCccceeeccCcccccccc-----
Q 039967          256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVN-----  326 (445)
Q Consensus       256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~-----  326 (445)
                      .+.                   ......+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+...     
T Consensus       246 ~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          246 ELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             HHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             HHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            000                   00111234455555555544422    23333444555555555554432111     


Q ss_pred             -----CCCcceEEcccCccccC----CCccccCCCCCcEEECCCCccccccchhhcc-----ccCCCEEEccCCeeec--
Q 039967          327 -----VPKLGTFIISVNNISES----IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGK-----LFSLNKLILNLNQLSG--  390 (445)
Q Consensus       327 -----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~--  390 (445)
                           .++|+.|++++|.++..    .+..+..+++|++|++++|.+.+..+..+..     .++|++|++++|++.+  
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~  386 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  386 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence                 24566666666665543    2344556788888888888877655544432     6788888888888875  


Q ss_pred             --ccchhhcCCccCceeecCCCccccccCcccc-----CCCCccEEeCCCCccccc
Q 039967          391 --GMPLELGSLIELQYLDLSTNKLKSSIPKSIG-----NLLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       391 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~  439 (445)
                        .++..+..+++|++|++++|++.......+.     ...+|++|++.++.+...
T Consensus       387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          387 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence              5566777788888888888888765443332     234688888877776643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=6.3e-32  Score=259.04  Aligned_cols=346  Identities=18%  Similarity=0.167  Sum_probs=228.8

Q ss_pred             ccceEEecCCcCCCCccc-cccCCCCCcEEEccCCcccCC----CCccccCCCCCceEEeccCccccccCccc-cCCC--
Q 039967           94 NLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGS----IPLSLGNLSNLDKLYLYSNSFSGSIPSII-GNLK--  165 (445)
Q Consensus        94 ~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~--  165 (445)
                      ++++|+++++.+...... .+..+++|++|++++|.++..    ++..+..+++|++|++++|.+....+..+ ..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            344444444443322222 245556666666666665522    23445556666666666666543222211 1223  


Q ss_pred             --CcCEEeCCCccccc----cccccccCCCCCcEEEccCCccCCCCCcc-----ccCCCCcCEEEccCccccCCC----C
Q 039967          166 --SLLQLDLSENQLIG----SIPLSFGNLSSLTLMSLFNNSLSGSLPPI-----LGNLKSLSALGLHINQLSGVI----P  230 (445)
Q Consensus       166 --~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~----~  230 (445)
                        +|++|++++|.+..    ..+..+..+++|++|++++|.+....+..     ....++|++|++++|.+....    .
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              56777777666553    23555666677777777766654322211     112456777777777665432    2


Q ss_pred             ccccCCCcccEEEeeCccccccChhhhc-----ccccccEEecccCccCCC----ccccccccCCccEEEcCCCcccCCC
Q 039967          231 SSIGNLSSLRALYLYNNGLYSFVPEEIR-----YLTSLSELELCTNHLSGV----IPHSIGNLTGLLLLNMCENHLSGPI  301 (445)
Q Consensus       231 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~  301 (445)
                      ..+..+++|++|++++|.+.......+.     ..++|++|++++|.+...    .+..+..+++|++|++++|.+.+..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            3455567888888888876553333332     245899999999988754    2455667899999999999876432


Q ss_pred             -----CccccccCccceeeccCcccccc-----c----cCCCcceEEcccCccccCCCcccc-----CCCCCcEEECCCC
Q 039967          302 -----PKSFKNLTSVERVLLNQNNLSGK-----V----NVPKLGTFIISVNNISESIPPEIG-----DSPKLQVLDLSSN  362 (445)
Q Consensus       302 -----~~~~~~~~~L~~L~l~~~~~~~~-----~----~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~  362 (445)
                           +..+..+++|+.|++++|.+.+.     .    .+++|+.|++++|.+.+..+..+.     ..++|++|++++|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence                 22333588999999999988763     2    278999999999988643332222     3479999999999


Q ss_pred             ccccc----cchhhccccCCCEEEccCCeeecccchhhcC-----CccCceeecCCCcccc----ccCccccCCCCccEE
Q 039967          363 NIVGE----IPVQLGKLFSLNKLILNLNQLSGGMPLELGS-----LIELQYLDLSTNKLKS----SIPKSIGNLLRLCYL  429 (445)
Q Consensus       363 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l  429 (445)
                      .+++.    ++..+..+++|++|++++|++.+..+..+..     .++|+.|++++|.+++    ..+..+..+++|++|
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            99865    4566778899999999999987554444432     6799999999999986    556778889999999


Q ss_pred             eCCCCccccc
Q 039967          430 DLSNNQFGHK  439 (445)
Q Consensus       430 ~l~~~~~~~~  439 (445)
                      ++++|++++.
T Consensus       404 ~l~~N~i~~~  413 (461)
T 1z7x_W          404 DLSNNCLGDA  413 (461)
T ss_dssp             ECCSSSCCHH
T ss_pred             ECCCCCCCHH
Confidence            9999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=6.9e-29  Score=224.54  Aligned_cols=249  Identities=31%  Similarity=0.475  Sum_probs=124.5

Q ss_pred             CCceEEeccCcccc--ccCccccCCCCcCEEeCCC-ccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEE
Q 039967          142 NLDKLYLYSNSFSG--SIPSIIGNLKSLLQLDLSE-NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL  218 (445)
Q Consensus       142 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  218 (445)
                      +++.|++.++.+..  ..|..+.++++|++|++++ +.+.+..|..+..+++|++|++++|.+....|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45555555555543  3444455555555555552 44444444444445555555555444443444444444444444


Q ss_pred             EccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccC-CccEEEcCCCcc
Q 039967          219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT-GLLLLNMCENHL  297 (445)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~  297 (445)
                      ++++|.+....+..+.                        .+++|++|++++|.+....+..+..++ .|++|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLPPSIS------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCGGGG------------------------GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCChHHh------------------------cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            4444444433333344                        444444444444444333333333333 445555555544


Q ss_pred             cCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccC
Q 039967          298 SGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS  377 (445)
Q Consensus       298 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  377 (445)
                      .+..+..+..+. |+.|++++|.+                   .+..+..+..+++|++|++++|.+.+..+. +..+++
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~  245 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNML-------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN  245 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEE-------------------EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTT
T ss_pred             eccCChHHhCCc-ccEEECcCCcc-------------------cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCC
Confidence            444444444333 44444444333                   233444455556666666666665543333 455566


Q ss_pred             CCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcc
Q 039967          378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF  436 (445)
Q Consensus       378 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  436 (445)
                      |++|++++|++.+..|..+..+++|+.|++++|++++..|.. ..+++|+.+++.+|++
T Consensus       246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            666666666665555666666666666666666666554443 5566666666666653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.5e-28  Score=222.35  Aligned_cols=251  Identities=30%  Similarity=0.482  Sum_probs=199.8

Q ss_pred             CCCcEEEccCCcccC--CCCccccCCCCCceEEecc-CccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcE
Q 039967          117 NSLSTMDLSQNQFSG--SIPLSLGNLSNLDKLYLYS-NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTL  193 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  193 (445)
                      .+++.|+++++.++.  ..|..+..+++|++|++++ +.+....|..+.++++|++|++++|.+....|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999987  7888999999999999995 8888788999999999999999999998788889999999999


Q ss_pred             EEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCC-cccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967          194 MSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS-SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH  272 (445)
Q Consensus       194 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  272 (445)
                      |++++|.+....|..+..+++|++|++++|.+....+..+..++ +|+.|++++|.+....+..+..++           
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-----------  198 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-----------
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-----------
Confidence            99999999988899999999999999999988766666777666 777777777766554444444433           


Q ss_pred             cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967          273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP  352 (445)
Q Consensus       273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  352 (445)
                                    |++|++++|.+.+..+..+..+++|+.|++++|.+.                   ... ..+..++
T Consensus       199 --------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~-~~~~~l~  244 (313)
T 1ogq_A          199 --------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-------------------FDL-GKVGLSK  244 (313)
T ss_dssp             --------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-------------------CBG-GGCCCCT
T ss_pred             --------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-------------------eec-CcccccC
Confidence                          555555555555445555555555666655555443                   111 1245568


Q ss_pred             CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      +|++|++++|.+++..|..+..+++|+.|++++|++.+.+|.. ..+++|+.|++++|+..
T Consensus       245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred             CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence            8999999999988888888999999999999999998777765 78899999999999844

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.1e-30  Score=256.39  Aligned_cols=380  Identities=12%  Similarity=0.036  Sum_probs=225.5

Q ss_pred             CCCCCcEEEecCcccccCCCccccc-CCC-ccEEEecCcccc------------cccceEEecCCcCCCC----cccccc
Q 039967           53 HLNQLRILYFDVNQLHGSIPLEIGQ-LSL-INVLALCHNYFV------------CNLANFYLNNNSLFNS----IPLVLG  114 (445)
Q Consensus        53 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~l~l~~~~~~------------~~L~~l~l~~~~~~~~----~~~~~~  114 (445)
                      .+++|++|+++++.+++..+..+.. ++. |+++++.+|...            ++|++|++++|.+.+.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4556666666665554333333433 222 555555554311            4566666666655433    233445


Q ss_pred             CCCCCcEEEccCCcccC----CCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccc---ccccccccC
Q 039967          115 NLNSLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI---GSIPLSFGN  187 (445)
Q Consensus       115 ~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~l~~  187 (445)
                      .+++|++|+++++.++.    ..+..+..+++|++|++.+|.+. ..+..+..+++|+.|++++....   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            66777888887777652    22333456777888888777766 35566677777887777643211   122344566


Q ss_pred             CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCccccccChhhhcccccccEE
Q 039967          188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL  266 (445)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  266 (445)
                      +++|+.+.+.++... ..+..+..+++|++|++++|.+..... ..+..+++|+.|++.++-.....+.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            777777777765333 455566667788888888777532222 234667788888877332222233344566778888


Q ss_pred             eccc----------C-ccCCCcc-ccccccCCccEEEcCCCcccCCCCccccc-cCccceeecc----Ccccccc-----
Q 039967          267 ELCT----------N-HLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKN-LTSVERVLLN----QNNLSGK-----  324 (445)
Q Consensus       267 ~l~~----------~-~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----  324 (445)
                      ++.+          + .+..... .....+++|++|++..+.+.+.....+.. +++|+.|++.    .+.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            8873          3 3332211 12344677888888666666544444443 7778888775    3344431     


Q ss_pred             -----ccCCCcceEEcccCc--cccCCCccc-cCCCCCcEEECCCCccccc-cchhhccccCCCEEEccCCeeecc-cch
Q 039967          325 -----VNVPKLGTFIISVNN--ISESIPPEI-GDSPKLQVLDLSSNNIVGE-IPVQLGKLFSLNKLILNLNQLSGG-MPL  394 (445)
Q Consensus       325 -----~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~  394 (445)
                           ..+++|+.|++++|.  +++.....+ ..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+. .+.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence                 227778888886543  333222222 3467888888888887753 344456788888888888886533 233


Q ss_pred             hhcCCccCceeecCCCccccccCccc-cCCCCccEEeCCCC
Q 039967          395 ELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNN  434 (445)
Q Consensus       395 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~  434 (445)
                      ....+++|+.|++++|+++......+ ..+|.+....+..+
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            34567888888888888776655555 35676665555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=7.1e-29  Score=245.45  Aligned_cols=389  Identities=15%  Similarity=0.103  Sum_probs=276.7

Q ss_pred             ccccCCCCCcEEEecCcccc---cCCCccc------------ccCCCccEEEecCcccc-----------cc-cceEEec
Q 039967           49 LEIGHLNQLRILYFDVNQLH---GSIPLEI------------GQLSLINVLALCHNYFV-----------CN-LANFYLN  101 (445)
Q Consensus        49 ~~l~~~~~L~~L~l~~~~~~---~~~~~~~------------~~l~~L~~l~l~~~~~~-----------~~-L~~l~l~  101 (445)
                      ..+..+++|+.|+++++...   +..|...            ..++.|++++++++.+.           ++ |++|+++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence            34456777888888664321   1122222            27899999999988653           24 9999999


Q ss_pred             CCcCCC--CccccccCCCCCcEEEccCCcccCC----CCccccCCCCCceEEeccCccc----cccCccccCCCCcCEEe
Q 039967          102 NNSLFN--SIPLVLGNLNSLSTMDLSQNQFSGS----IPLSLGNLSNLDKLYLYSNSFS----GSIPSIIGNLKSLLQLD  171 (445)
Q Consensus       102 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~  171 (445)
                      +|....  .++.....+++|++|++++|.+++.    ++..+..+++|++|++.++.+.    ...+..+.++++|++|+
T Consensus       147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~  226 (592)
T 3ogk_B          147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK  226 (592)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence            886221  2223345789999999999988654    2234567899999999998875    23344566789999999


Q ss_pred             CCCccccccccccccCCCCCcEEEccCCccC---CCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcc
Q 039967          172 LSENQLIGSIPLSFGNLSSLTLMSLFNNSLS---GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG  248 (445)
Q Consensus       172 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  248 (445)
                      +++|.+.. .+..+..+++|+.|.+......   ......+..+++|+.+++..+... ..+..+..+++|++|++++|.
T Consensus       227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCC
T ss_pred             ccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCc
Confidence            99998774 6677889999999999754322   223345667789999999875433 445566778999999999998


Q ss_pred             ccccCh-hhhcccccccEEecccCccCCCccccccccCCccEEEcCC-----------CcccCC-CCccccccCccceee
Q 039967          249 LYSFVP-EEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE-----------NHLSGP-IPKSFKNLTSVERVL  315 (445)
Q Consensus       249 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~~~~L~~L~  315 (445)
                      +..... ..+..+++|+.|++.++............+++|++|++++           +.+.+. .......+++|++|+
T Consensus       305 l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~  384 (592)
T 3ogk_B          305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA  384 (592)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred             CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence            654322 3457889999999984322222233346678999999994           344322 222345689999999


Q ss_pred             ccCccccccc------cCCCcceEEcc----cCccccC-----CCccccCCCCCcEEECCCCc--cccccchhhc-cccC
Q 039967          316 LNQNNLSGKV------NVPKLGTFIIS----VNNISES-----IPPEIGDSPKLQVLDLSSNN--IVGEIPVQLG-KLFS  377 (445)
Q Consensus       316 l~~~~~~~~~------~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~  377 (445)
                      +..+.+.+..      .+++|+.|+++    .+.+++.     .+..+..+++|++|+++.|.  +++..+..+. .+++
T Consensus       385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~  464 (592)
T 3ogk_B          385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN  464 (592)
T ss_dssp             EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred             eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence            9877776432      28899999997    3455432     11225568999999998765  5555444444 5899


Q ss_pred             CCEEEccCCeeec-ccchhhcCCccCceeecCCCccccccCcc-ccCCCCccEEeCCCCccccc
Q 039967          378 LNKLILNLNQLSG-GMPLELGSLIELQYLDLSTNKLKSSIPKS-IGNLLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       378 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~  439 (445)
                      |+.|++++|++.+ ..+..+.++++|++|++++|.+++..... +..+++|++|++++|++++.
T Consensus       465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            9999999999875 33455678999999999999987554433 46799999999999998865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4.9e-27  Score=216.60  Aligned_cols=281  Identities=22%  Similarity=0.166  Sum_probs=185.5

Q ss_pred             ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT  192 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  192 (445)
                      ...|+.....+.+++.++ .+|..+.  ++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+
T Consensus        27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            344566667888888887 4565544  5899999999998865565788999999999999988876677788899999


Q ss_pred             EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCcc-ccccChhhhcccccccEEeccc
Q 039967          193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNG-LYSFVPEEIRYLTSLSELELCT  270 (445)
Q Consensus       193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~  270 (445)
                      +|++++|.++...+..+..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            99999998885555557888999999999888875444 467788888888888873 5555556677777888888887


Q ss_pred             CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccC
Q 039967          271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGD  350 (445)
Q Consensus       271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  350 (445)
                      |.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+...                ........
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----------------~~l~~~~~  247 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF----------------SELSTGET  247 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC----------------C------C
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc----------------cccccccc
Confidence            77776556667777777777777776653222233345666666666655432110                00001123


Q ss_pred             CCCCcEEECCCCcccc----ccchhhccccCCCEEEccCCeeecccchh-hcCCccCceeecCCCccc
Q 039967          351 SPKLQVLDLSSNNIVG----EIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       351 ~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  413 (445)
                      ++.++.++++++.+.+    ..|..+..+++|+.|++++|++. .+|.. +..+++|++|++++|++.
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            3556666666665543    23344455555555555555555 33322 345555555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=8.2e-26  Score=204.26  Aligned_cols=241  Identities=24%  Similarity=0.275  Sum_probs=107.9

Q ss_pred             eEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCC--CccccCCCCcCEEEccC
Q 039967          145 KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL--PPILGNLKSLSALGLHI  222 (445)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~  222 (445)
                      .+++.++.++ ..|..+  .++|++|++++|.+....+..+..+++|++|++++|.+....  +..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            3444444444 333322  245555555555554332233455555555555555443111  22233344444444444


Q ss_pred             ccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCCcccCCC
Q 039967          223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPI  301 (445)
Q Consensus       223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~  301 (445)
                      |.                        +.. .+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..
T Consensus        88 n~------------------------i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           88 NG------------------------VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CS------------------------EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             Cc------------------------ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            44                        333 12223344444444444444443222 23444455555555555554444


Q ss_pred             CccccccCccceeeccCcccccc------ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccc
Q 039967          302 PKSFKNLTSVERVLLNQNNLSGK------VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL  375 (445)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  375 (445)
                      +..+..+++|++|++++|.+.+.      ..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            44445555555555555444310      012222222222223323333444455555555555555554444444555


Q ss_pred             cCCCEEEccCCeeecccchhhcCCc-cCceeecCCCccc
Q 039967          376 FSLNKLILNLNQLSGGMPLELGSLI-ELQYLDLSTNKLK  413 (445)
Q Consensus       376 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~  413 (445)
                      ++|+.|++++|++.+..+..+..++ +|+.|++++|++.
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            5555555555555544444444442 5555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=212.37  Aligned_cols=248  Identities=25%  Similarity=0.263  Sum_probs=134.3

Q ss_pred             CceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccC
Q 039967          143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI  222 (445)
Q Consensus       143 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  222 (445)
                      .+.+...+..+. .+|..+.  ++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            445555555555 4454432  5667777777766655555666666666666666666654445566666666666666


Q ss_pred             ccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC
Q 039967          223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP  302 (445)
Q Consensus       223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  302 (445)
                      |.+.......+..+++|++|++++|.+....+..+..+++|++|++++|...                       ....+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l-----------------------~~i~~  178 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-----------------------SYISE  178 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-----------------------CEECT
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc-----------------------ceeCc
Confidence            6655444445555566666666665555544444555555555555543221                       11122


Q ss_pred             ccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEE
Q 039967          303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI  382 (445)
Q Consensus       303 ~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  382 (445)
                      ..|..+++|+.|++++|.+..                    .+ .+..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~~--------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  237 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLRE--------------------IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW  237 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCSS--------------------CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             chhhcccccCeecCCCCcCcc--------------------cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence            233444444444444443321                    11 133445555555555555555555555555555555


Q ss_pred             ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +++|++.+..+..|..+++|+.|+|++|+++...+..|..+++|++|++++|+|.
T Consensus       238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            5555555444555555556666666666555444455555566666666666553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.3e-25  Score=212.38  Aligned_cols=248  Identities=26%  Similarity=0.250  Sum_probs=145.9

Q ss_pred             CceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccC
Q 039967          143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI  222 (445)
Q Consensus       143 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  222 (445)
                      ...+...+..+. ..|..+.  ++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            344555555554 3444332  4666666666666655555566666666666666666544445555555666666655


Q ss_pred             ccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC
Q 039967          223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP  302 (445)
Q Consensus       223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  302 (445)
                      |.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.                       .+....+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~  189 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYISE  189 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECT
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccCh
Confidence            55554444445555555555555555544433344444444444444422                       2221222


Q ss_pred             ccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEE
Q 039967          303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI  382 (445)
Q Consensus       303 ~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  382 (445)
                      ..|..+++|+.|++++|.+.+                    . ..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~--------------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKD--------------------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSS--------------------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred             hhccCCCCCCEEECCCCcccc--------------------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence            334455555555555554431                    1 1244566777777777777766677777777777777


Q ss_pred             ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +++|++.+..+..+.++++|+.|+|++|+++...+..|..+++|++|++++|+|.
T Consensus       249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            7777777666667777777777777777777666666777777777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.8e-26  Score=209.41  Aligned_cols=277  Identities=21%  Similarity=0.217  Sum_probs=214.5

Q ss_pred             eEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc
Q 039967           97 NFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ  176 (445)
Q Consensus        97 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  176 (445)
                      ..+.+++.+. .+|..+.  ++|++|++++|.++...+..+..+++|++|++++|.+....+..|.++++|++|++++|.
T Consensus        35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            3566666655 4454443  589999999999987666689999999999999999987777889999999999999999


Q ss_pred             ccccccccccCCCCCcEEEccCCccCCCCC-ccccCCCCcCEEEccCcc-ccCCCCccccCCCcccEEEeeCccccccCh
Q 039967          177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSLSALGLHINQ-LSGVIPSSIGNLSSLRALYLYNNGLYSFVP  254 (445)
Q Consensus       177 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  254 (445)
                      +....+..+..+++|++|++++|.+..... ..+..+++|+++++++|. +....+..+..+++|++|++++|.+....+
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            886555558899999999999999985444 478889999999999984 555556678899999999999999988778


Q ss_pred             hhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCcccc---ccCccceeeccCccccccccCCCcc
Q 039967          255 EEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK---NLTSVERVLLNQNNLSGKVNVPKLG  331 (445)
Q Consensus       255 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~L~  331 (445)
                      ..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+.   ....++.++++++.+.         
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~---------  262 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT---------  262 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC---------
T ss_pred             HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc---------
Confidence            8888999999999999988754444556689999999999988865433322   2334444444444322         


Q ss_pred             eEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecc
Q 039967          332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG  391 (445)
Q Consensus       332 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  391 (445)
                           ++.+. ..+..+..+++|++|++++|.++...+..+..+++|++|++++|++.+.
T Consensus       263 -----~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          263 -----DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             -----HHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             -----Ccchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                 11111 2345677889999999999999844444468999999999999998744

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.3e-25  Score=200.77  Aligned_cols=268  Identities=25%  Similarity=0.269  Sum_probs=123.9

Q ss_pred             cEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCC
Q 039967          120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN  199 (445)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  199 (445)
                      ++++.+++.++ .+|..+  .+++++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34555555554 223222  245555555555555444445555556666666555555444455555555555555555


Q ss_pred             c-cCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCcc
Q 039967          200 S-LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP  278 (445)
Q Consensus       200 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  278 (445)
                      . +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            4 443334444555555555555555443333344444455555555444444333333344444444444444432222


Q ss_pred             ccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEE
Q 039967          279 HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLD  358 (445)
Q Consensus       279 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  358 (445)
                      ..+..+++|++|++++|.+.+..                                           +..+..+++|++|+
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~-------------------------------------------~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVH-------------------------------------------PHAFRDLGRLMTLY  207 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEEC-------------------------------------------TTTTTTCTTCCEEE
T ss_pred             HHhcCccccCEEECCCCcccccC-------------------------------------------HhHccCcccccEee
Confidence            23333344444444444333222                                           33444445555555


Q ss_pred             CCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC--CCCccEEeCCCC
Q 039967          359 LSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN--LLRLCYLDLSNN  434 (445)
Q Consensus       359 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~l~l~~~  434 (445)
                      +++|.+++..+..+..+++|+.|++++|++...-+.. .-...++.+..+.+.+.-..|..+..  +..++..++.+|
T Consensus       208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            5555555444444555555555555555554221110 11123444444444444444444422  334444444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.4e-25  Score=202.77  Aligned_cols=261  Identities=23%  Similarity=0.237  Sum_probs=132.6

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc--cCccccCCCCcCEEeCCCccccccccccccCCCCCcEE
Q 039967          117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS--IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLM  194 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  194 (445)
                      +++++|+++++.++...+..|..+++|++|++++|.+...  .+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4566666666666543333455666666666666655421  1333445566666666666554 234445555555555


Q ss_pred             EccCCccCCCCC-ccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCcc
Q 039967          195 SLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL  273 (445)
Q Consensus       195 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  273 (445)
                      ++++|.+....+ ..+..+++|++|++++|.                        +....+..+..+++|++|++++|.+
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------------------------l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------------------------TRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSC------------------------CEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCc------------------------CCccchhhcccCcCCCEEECCCCcc
Confidence            555555543222 234444445555544444                        4443334444445555555555544


Q ss_pred             CC-CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967          274 SG-VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP  352 (445)
Q Consensus       274 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  352 (445)
                      .. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.                   ...+..+..++
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~  223 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-------------------SLDTFPYKCLN  223 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-------------------BCCSGGGTTCT
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-------------------ccChhhccCcc
Confidence            32 23344555556666666666555444555555555555555555443                   22223345556


Q ss_pred             CCcEEECCCCccccccchhhcccc-CCCEEEccCCeeecccc--hhhcCCccCceeecCCCccccccCcccc
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLF-SLNKLILNLNQLSGGMP--LELGSLIELQYLDLSTNKLKSSIPKSIG  421 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~  421 (445)
                      +|++|++++|.+.+..+..+..++ +|+.|++++|++.+.-.  .....+...+.+.+..+.+.-..|..+.
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence            666666666666655555555553 66666666666643211  1112233444444444444444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-25  Score=199.99  Aligned_cols=235  Identities=24%  Similarity=0.219  Sum_probs=155.4

Q ss_pred             CCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcc-ccccChhhhcccccccEEec
Q 039967          190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG-LYSFVPEEIRYLTSLSELEL  268 (445)
Q Consensus       190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  268 (445)
                      ++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444443333334444445555555444443334445555555555555554 44444455556666666666


Q ss_pred             ccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccc
Q 039967          269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI  348 (445)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  348 (445)
                      ++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.                   ...+..+
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~~~~  173 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-------------------SVPERAF  173 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------EECTTTT
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-------------------ccCHHHh
Confidence            666666555556666777777777777777555556777777777777776554                   2334457


Q ss_pred             cCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccE
Q 039967          349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCY  428 (445)
Q Consensus       349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  428 (445)
                      ..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++...-+ ...-...++.
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~  252 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQK  252 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHH
T ss_pred             cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHHHHHHh
Confidence            788999999999999998888999999999999999999997666779999999999999999873211 1111234566


Q ss_pred             EeCCCCcccccCCCCC
Q 039967          429 LDLSNNQFGHKILVEL  444 (445)
Q Consensus       429 l~l~~~~~~~~~~~~~  444 (445)
                      +....+.+....|+++
T Consensus       253 ~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          253 FRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             CCSEECCCBEEESGGG
T ss_pred             cccccCccccCCchHh
Confidence            6667777777777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.5e-28  Score=243.19  Aligned_cols=379  Identities=14%  Similarity=0.096  Sum_probs=207.6

Q ss_pred             CCCCCcEEEecCcccccCCCcccc-cCCCccEEEecCcccc------------cccceEEecCCcCCCCccc----cccC
Q 039967           53 HLNQLRILYFDVNQLHGSIPLEIG-QLSLINVLALCHNYFV------------CNLANFYLNNNSLFNSIPL----VLGN  115 (445)
Q Consensus        53 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~------------~~L~~l~l~~~~~~~~~~~----~~~~  115 (445)
                      .+++|++|+++++.+++..+..+. .+++|+++++.+|...            ++|++|++++|.+....+.    ....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            455666666666555443333333 4555555555544211            3455555555554332222    2235


Q ss_pred             CCCCcEEEccCCc--ccC-CCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc-------ccccccccc
Q 039967          116 LNSLSTMDLSQNQ--FSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ-------LIGSIPLSF  185 (445)
Q Consensus       116 ~~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l  185 (445)
                      +++|++|+++++.  ++. .....+..+++|++|++.+|......+..+..+++|+.|++..+.       +. ..+..+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence            5677777777765  211 111122345777777777763222345556667777777755443       11 123345


Q ss_pred             cCCCCCcEE-EccCCccCCCCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCccccc-cChhhhccccc
Q 039967          186 GNLSSLTLM-SLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNGLYS-FVPEEIRYLTS  262 (445)
Q Consensus       186 ~~l~~L~~L-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~  262 (445)
                      ..+++|+.+ .+...... ..+..+..+++|++|++++|.+..... ..+..+++|+.|++.+| +.. ........+++
T Consensus       262 ~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            667777777 33332221 233333456788888888777542211 12446778888888877 322 12223335677


Q ss_pred             ccEEecccC---------ccCCCccccc-cccCCccEEEcCCCcccCCCCcccc-ccCccceeecc--C----ccccc--
Q 039967          263 LSELELCTN---------HLSGVIPHSI-GNLTGLLLLNMCENHLSGPIPKSFK-NLTSVERVLLN--Q----NNLSG--  323 (445)
Q Consensus       263 L~~L~l~~~---------~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~--  323 (445)
                      |++|++.++         .+.......+ ..+++|++|.+..+.+.+.....+. .+++|+.|++.  +    +.+++  
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            888877432         2222111222 2367778777766666544333333 57778888777  2    23331  


Q ss_pred             --------cccCCCcceEEcccCccccCCCccccC-CCCCcEEECCCCccccccchhh-ccccCCCEEEccCCeeecccc
Q 039967          324 --------KVNVPKLGTFIISVNNISESIPPEIGD-SPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMP  393 (445)
Q Consensus       324 --------~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~  393 (445)
                              ...+++|+.|++++ .+++.....+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++.+...
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence                    12266777777765 444333333333 6778888888777765544444 567778888888887753333


Q ss_pred             h-hhcCCccCceeecCCCccccccCccc-cCCCCccEEeCCCCc
Q 039967          394 L-ELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQ  435 (445)
Q Consensus       394 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~  435 (445)
                      . ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            2 23446778888888887765444444 456666655555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.1e-25  Score=201.70  Aligned_cols=234  Identities=26%  Similarity=0.326  Sum_probs=143.7

Q ss_pred             CCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEE
Q 039967          164 LKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY  243 (445)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  243 (445)
                      .++++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. ..+..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            356667777776665 45555666667777777766666 55666666666666666666665 4455566666666666


Q ss_pred             eeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc
Q 039967          244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG  323 (445)
Q Consensus       244 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  323 (445)
                      +++|......+..+..      ..         ....+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. 
T Consensus       157 L~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-  219 (328)
T ss_dssp             EEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred             CCCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence            6665554433332221      00         0112344666777777777666 55556666666666666666543 


Q ss_pred             cccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCc
Q 039967          324 KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQ  403 (445)
Q Consensus       324 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  403 (445)
                                         ..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus       220 -------------------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          220 -------------------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             -------------------CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             -------------------cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence                               2333455666666666666666666666666666666666666666666666666666677


Q ss_pred             eeecCCCccccccCccccCCCCccEEeCCCCcc
Q 039967          404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF  436 (445)
Q Consensus       404 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  436 (445)
                      .|++++|++.+..|..+.++++|+.+++..+.+
T Consensus       281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            777776666666666666666666666665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=5e-25  Score=200.39  Aligned_cols=221  Identities=26%  Similarity=0.301  Sum_probs=119.9

Q ss_pred             CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967            6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA   85 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   85 (445)
                      .+++++|+++++.+..+ +..+.++++|++|++++|.+. ..|..+.++++|++|++++|.+. .+|..+.++++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            35677777777766644 444666777777777777766 56666667777777777777666 5566666666555554


Q ss_pred             ecCcccccccceEEecCCcCCCCccccc---------cCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc
Q 039967           86 LCHNYFVCNLANFYLNNNSLFNSIPLVL---------GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS  156 (445)
Q Consensus        86 l~~~~~~~~L~~l~l~~~~~~~~~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  156 (445)
                      +++|.              ..+.+|..+         .++++|++|++++|.++ .+|..+..+++|++|++++|.+. .
T Consensus       157 L~~n~--------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~  220 (328)
T 4fcg_A          157 IRACP--------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A  220 (328)
T ss_dssp             EEEET--------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred             CCCCC--------------CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence            44432              222333322         23555555555555555 44444555555555555555554 3


Q ss_pred             cCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCC
Q 039967          157 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL  236 (445)
Q Consensus       157 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  236 (445)
                      .+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....+..+..+
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            34445555555555555555444444445555555555555554444444444444555555555544444444444444


Q ss_pred             CcccEEEee
Q 039967          237 SSLRALYLY  245 (445)
Q Consensus       237 ~~L~~L~l~  245 (445)
                      ++|+.+++.
T Consensus       301 ~~L~~l~l~  309 (328)
T 4fcg_A          301 PANCIILVP  309 (328)
T ss_dssp             CTTCEEECC
T ss_pred             cCceEEeCC
Confidence            444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=4.5e-24  Score=202.74  Aligned_cols=242  Identities=23%  Similarity=0.244  Sum_probs=139.2

Q ss_pred             CcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccC
Q 039967          119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFN  198 (445)
Q Consensus       119 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  198 (445)
                      ...++..+..++ .+|..+.  ++++.|++.+|.+....+..|.++++|+.|++++|.+....+..|..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            345555555555 3343333  4566666666666544455566666666666666666555555566666666666666


Q ss_pred             CccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcc-ccccChhhhcccccccEEecccCccCCCc
Q 039967          199 NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG-LYSFVPEEIRYLTSLSELELCTNHLSGVI  277 (445)
Q Consensus       199 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  277 (445)
                      |.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|+ +.......+..+++|++|++++|.+... 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence            66665444456666666666666666655545556666666666666633 3333344566666777777777666532 


Q ss_pred             cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCCccccCCC
Q 039967          278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSP  352 (445)
Q Consensus       278 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~  352 (445)
                      + .+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....     .+++|+.|++++|+++...+..+..++
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            2 3556667777777777776556666667777777766666554221     123333333333344333444445555


Q ss_pred             CCcEEECCCCccc
Q 039967          353 KLQVLDLSSNNIV  365 (445)
Q Consensus       353 ~L~~L~l~~~~~~  365 (445)
                      +|+.|++++|++.
T Consensus       280 ~L~~L~L~~Np~~  292 (440)
T 3zyj_A          280 HLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             CCCEEEcCCCCcc
Confidence            5555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=4.3e-24  Score=203.54  Aligned_cols=230  Identities=20%  Similarity=0.218  Sum_probs=146.2

Q ss_pred             ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967           94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS  173 (445)
Q Consensus        94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  173 (445)
                      ++++|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            44555555555555555566666666666666666665555666666666666666666664444456666667777776


Q ss_pred             CccccccccccccCCCCCcEEEccCC-ccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcccccc
Q 039967          174 ENQLIGSIPLSFGNLSSLTLMSLFNN-SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF  252 (445)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  252 (445)
                      +|.+....+..+..+++|+.|+++++ .+....+..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+...
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCccc
Confidence            66666444445666666777766663 33323333456666777777776666532  2355666777777777777666


Q ss_pred             ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc
Q 039967          253 VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV  325 (445)
Q Consensus       253 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  325 (445)
                      .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...+
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            6666667777777777777766555566666777777777777776555556666777777777777665443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=4.8e-27  Score=232.45  Aligned_cols=386  Identities=14%  Similarity=0.115  Sum_probs=246.4

Q ss_pred             cccCCCCCcEEEecCcccccC---C------------CcccccCCCccEEEecCcccc-----------cccceEEecCC
Q 039967           50 EIGHLNQLRILYFDVNQLHGS---I------------PLEIGQLSLINVLALCHNYFV-----------CNLANFYLNNN  103 (445)
Q Consensus        50 ~l~~~~~L~~L~l~~~~~~~~---~------------~~~~~~l~~L~~l~l~~~~~~-----------~~L~~l~l~~~  103 (445)
                      .+..+++|+.|+++++.....   .            +.....++.|++++++++.+.           ++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            344566677777766542210   1            111346788888888876543           67888888877


Q ss_pred             cCCCC--ccccccCCCCCcEEEccCCcccCCCCccc----cCCCCCceEEeccCc--ccc-ccCccccCCCCcCEEeCCC
Q 039967          104 SLFNS--IPLVLGNLNSLSTMDLSQNQFSGSIPLSL----GNLSNLDKLYLYSNS--FSG-SIPSIIGNLKSLLQLDLSE  174 (445)
Q Consensus       104 ~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~  174 (445)
                      ...+.  ++.....+++|++|++++|.+++..+..+    ..+++|++|++.++.  +.. .....+.++++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence            32222  33444567888888888887664433333    356688888887775  211 1122234467888888887


Q ss_pred             ccccccccccccCCCCCcEEEccCCccC------CCCCccccCCCCcCEE-EccCccccCCCCccccCCCcccEEEeeCc
Q 039967          175 NQLIGSIPLSFGNLSSLTLMSLFNNSLS------GSLPPILGNLKSLSAL-GLHINQLSGVIPSSIGNLSSLRALYLYNN  247 (445)
Q Consensus       175 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  247 (445)
                      |......+..+..+++|+.|.+..+...      ...+..+.++++|+.+ .+...... ..+..+..+++|+.|++++|
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTC
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCC
Confidence            7322235556667788888876654321      0112245667777777 33322211 22223335789999999999


Q ss_pred             ccccc-ChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCC---------cccCCCCccc-cccCccceee
Q 039967          248 GLYSF-VPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCEN---------HLSGPIPKSF-KNLTSVERVL  315 (445)
Q Consensus       248 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~---------~~~~~~~~~~-~~~~~L~~L~  315 (445)
                      .+... ....+..+++|+.|++.+| +..... .....+++|+.|++.++         .+.+.....+ ..+++|+.|.
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            86542 2223567899999999987 332222 22345789999999442         3332222222 3589999998


Q ss_pred             ccCccccccc------cCCCcceEEcc--c----CccccCCC-----ccccCCCCCcEEECCCCccccccchhhcc-ccC
Q 039967          316 LNQNNLSGKV------NVPKLGTFIIS--V----NNISESIP-----PEIGDSPKLQVLDLSSNNIVGEIPVQLGK-LFS  377 (445)
Q Consensus       316 l~~~~~~~~~------~~~~L~~L~l~--~----~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~  377 (445)
                      +..+.+.+..      .+++|+.|++.  +    +.++....     ..+..+++|+.|++++ .+++..+..+.. +++
T Consensus       379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~  457 (594)
T 2p1m_B          379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK  457 (594)
T ss_dssp             EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred             HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence            8877776432      38999999998  3    34442211     1256789999999987 666555555554 899


Q ss_pred             CCEEEccCCeeecccchhh-cCCccCceeecCCCccccccCc-cccCCCCccEEeCCCCcccc
Q 039967          378 LNKLILNLNQLSGGMPLEL-GSLIELQYLDLSTNKLKSSIPK-SIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       378 L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~  438 (445)
                      |+.|++++|++++.....+ .++++|+.|++++|.+++.... ....+++|++|++++|+.+.
T Consensus       458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            9999999999865544444 6789999999999999765554 34568999999999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.2e-25  Score=203.88  Aligned_cols=263  Identities=20%  Similarity=0.157  Sum_probs=157.6

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      .++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555566665554444445566677777777777765555667777777777777777654332  6677777777777


Q ss_pred             CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCc
Q 039967          198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI  277 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  277 (445)
                      +|.+...     ...++|+++++++|.+.....   ..+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus        89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            7766521     123666666666666543221   22345566666665555544444555555555555555554333


Q ss_pred             cccc-cccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcE
Q 039967          278 PHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV  356 (445)
Q Consensus       278 ~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  356 (445)
                      +..+ ..+++|++|++++|.+.+. +. ...                   +++|+.|++++|++.. .+..+..+++|++
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~-------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~  218 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVV-------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTW  218 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-EC-CCC-------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-cc-ccc-------------------cccCCEEECCCCcCCc-chhhhcccCcccE
Confidence            3333 2345555555555554422 11 112                   3444444455555543 3334667788888


Q ss_pred             EECCCCccccccchhhccccCCCEEEccCCeee-cccchhhcCCccCceeecCCCccc
Q 039967          357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS-GGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       357 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      |++++|.++ .+|..+..+++|+.|++++|++. +..+..+..++.|+.|++++++..
T Consensus       219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l  275 (317)
T 3o53_A          219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL  275 (317)
T ss_dssp             EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence            888888887 45666777888888888888886 556677778888888888765433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=3.6e-23  Score=202.20  Aligned_cols=265  Identities=25%  Similarity=0.340  Sum_probs=188.7

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967          117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL  196 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  196 (445)
                      ..++.|+++++.++ .+|..+.  ++|++|++.+|.+. .+|.   .+++|++|++++|.+. .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            46899999999998 5566554  79999999999887 4555   5789999999999887 3454   6789999999


Q ss_pred             cCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCC
Q 039967          197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV  276 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  276 (445)
                      ++|.+.. ++.   .+++|+.|++++|.+... +.   .+++|++|++++|.+.....    .+++|+.|++.+|.+...
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC
Confidence            9998874 343   568899999999987743 22   24789999999988776422    346788899988888743


Q ss_pred             ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc-CCCcceEEcccCccccCCCccccCCCCCc
Q 039967          277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VPKLGTFIISVNNISESIPPEIGDSPKLQ  355 (445)
Q Consensus       277 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  355 (445)
                      .    ..+++|+.|++++|.+.+ ++.   ..++|+.|.+++|.+..... +++|+.|++++|+++. .+   ..+++|+
T Consensus       177 ~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~  244 (622)
T 3g06_A          177 P----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELK  244 (622)
T ss_dssp             C----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred             c----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCc
Confidence            3    456788899999888874 333   24678888888887765433 4567777777776664 22   3446677


Q ss_pred             EEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCcccc
Q 039967          356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIG  421 (445)
Q Consensus       356 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  421 (445)
                      .|++++|.++ .+|.   .+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+..+.
T Consensus       245 ~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          245 ELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             EEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             EEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            7777777666 3333   4566777777777766 5566666777777777777776655554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.5e-25  Score=203.18  Aligned_cols=263  Identities=19%  Similarity=0.147  Sum_probs=180.2

Q ss_pred             EEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967          146 LYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL  225 (445)
Q Consensus       146 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  225 (445)
                      .++..+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+  +..+++|++|++++|.+
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence            3444444443333445566788888888888776666677788888888888887764332  66777788888777776


Q ss_pred             cCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccc
Q 039967          226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF  305 (445)
Q Consensus       226 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  305 (445)
                      ..     +...++|++|++++|.+....+.   .+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+
T Consensus        93 ~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           93 QE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             EE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             cc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            52     22336777777777776654332   24567777777777665555556666677777777776664444433


Q ss_pred             -cccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEcc
Q 039967          306 -KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN  384 (445)
Q Consensus       306 -~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  384 (445)
                       ..+++|+.|++++|.+.                   ..  .....+++|++|++++|.+++. +..+..+++|+.|+++
T Consensus       165 ~~~l~~L~~L~L~~N~l~-------------------~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~  222 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIY-------------------DV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR  222 (317)
T ss_dssp             GGGTTTCCEEECTTSCCC-------------------EE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECT
T ss_pred             hhccCcCCEEECCCCcCc-------------------cc--ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECc
Confidence             24556666666655543                   22  1223478999999999999854 4458889999999999


Q ss_pred             CCeeecccchhhcCCccCceeecCCCccc-cccCccccCCCCccEEeCCCC-cccccCC
Q 039967          385 LNQLSGGMPLELGSLIELQYLDLSTNKLK-SSIPKSIGNLLRLCYLDLSNN-QFGHKIL  441 (445)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~-~~~~~~~  441 (445)
                      +|++. .+|..+..+++|+.|++++|++. +..+..+..+++|+.+++.+| .+.+..|
T Consensus       223 ~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             TSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            99998 56778888999999999999998 566677788889998888844 3334444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=7.9e-23  Score=199.77  Aligned_cols=267  Identities=25%  Similarity=0.341  Sum_probs=214.4

Q ss_pred             ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967           94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS  173 (445)
Q Consensus        94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  173 (445)
                      +++.++++++.+. .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            5888899888877 5565554  79999999999998 4454   5789999999999987 4555   67999999999


Q ss_pred             CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967          174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV  253 (445)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  253 (445)
                      +|.+.. +|.   .+++|+.|++++|.++. +|..   +++|++|++++|.+... +.   ..++|+.|++++|.+....
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc
Confidence            999874 444   57899999999999884 4442   48999999999988743 22   3578999999999988743


Q ss_pred             hhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-cCCCcce
Q 039967          254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-NVPKLGT  332 (445)
Q Consensus       254 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~L~~  332 (445)
                          ..+++|+.|++++|.+.....    .+++|+.|++++|.+. .++.   .+++|+.|++++|.+.+.+ .+++|+.
T Consensus       178 ----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~  245 (622)
T 3g06_A          178 ----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPVLPSELKE  245 (622)
T ss_dssp             ----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             ----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCCCCCCcCcE
Confidence                456899999999998874322    3478999999999888 4443   3478999999999988654 3679999


Q ss_pred             EEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCc
Q 039967          333 FIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI  400 (445)
Q Consensus       333 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  400 (445)
                      |++++|+++. ++.   .+++|+.|++++|.++ .+|..+.++++|+.|++++|++.+..+..+..++
T Consensus       246 L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          246 LMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             EECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            9999999984 333   5689999999999998 6688899999999999999999877776655433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=6.3e-25  Score=198.66  Aligned_cols=253  Identities=21%  Similarity=0.222  Sum_probs=171.5

Q ss_pred             ccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCC-CCCcccc-------CCCCcCEEEccCccccCCCCcc
Q 039967          161 IGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPILG-------NLKSLSALGLHINQLSGVIPSS  232 (445)
Q Consensus       161 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~  232 (445)
                      +...++|+.+++++|.+  ..|..+...  ++.|++.++.+.. ..+..+.       .+++|++|++++|.+....+..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            44567788888888887  455544433  7777777777642 2333332       5778888888888877555554


Q ss_pred             c--cCCCcccEEEeeCccccccChhhhccc-----ccccEEecccCccCCCccccccccCCccEEEcCCCcccCC--CCc
Q 039967          233 I--GNLSSLRALYLYNNGLYSFVPEEIRYL-----TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP--IPK  303 (445)
Q Consensus       233 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~  303 (445)
                      +  ..+++|++|++++|.+... +..+..+     ++|++|++++|.+....+..+..+++|++|++++|++.+.  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            4  6777888888888877765 4555544     6777777777777665556667777777777777765432  111


Q ss_pred             c--ccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccc-hhhccccCCCE
Q 039967          304 S--FKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP-VQLGKLFSLNK  380 (445)
Q Consensus       304 ~--~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~  380 (445)
                      .  +..+++|++|++++|.+....                ......+..+++|++|++++|.+.+..+ ..+..+++|+.
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPS----------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHH----------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred             HHHhccCCCCCEEECCCCcCcchH----------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence            2  245566666666665543111                1111233467888999999988886553 44566789999


Q ss_pred             EEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccccc
Q 039967          381 LILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       381 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  439 (445)
                      |++++|++. .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus       258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            999999887 6666655  7899999999999865 54 88899999999999998863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.9e-22  Score=178.09  Aligned_cols=208  Identities=25%  Similarity=0.236  Sum_probs=120.7

Q ss_pred             CcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcC
Q 039967          214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC  293 (445)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  293 (445)
                      ++++|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444443333344444555555555554444444444455555555555555544444445555556666666


Q ss_pred             CCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCcccc-CCCccccCCCCCcEEECCCCccccccchhh
Q 039967          294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE-SIPPEIGDSPKLQVLDLSSNNIVGEIPVQL  372 (445)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  372 (445)
                      +|.+.+..+..+..+++|+.|++++|.+.                   . ..+..+..+++|++|++++|.+++..+..+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQ-------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCC-------------------CCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccc-------------------eecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            55555444434555555555555554432                   2 134566667777777777777776655666


Q ss_pred             ccccCCC----EEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967          373 GKLFSLN----KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       373 ~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      ..+++|+    .|++++|++.+..+..+ ...+|+.|++++|+++...+..|..+++|++|++++|+|.+..|
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            6666666    77777777764433333 34478888888888776555666777888888888887775544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=6.2e-24  Score=192.11  Aligned_cols=201  Identities=20%  Similarity=0.225  Sum_probs=89.6

Q ss_pred             CCCcCEEeCCCccccccccccc--cCCCCCcEEEccCCccCCCCCccccCC-----CCcCEEEccCccccCCCCccccCC
Q 039967          164 LKSLLQLDLSENQLIGSIPLSF--GNLSSLTLMSLFNNSLSGSLPPILGNL-----KSLSALGLHINQLSGVIPSSIGNL  236 (445)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~  236 (445)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+... |..+..+     ++|++|++++|.+....+..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3444444444444333333332  3344444444444444332 3333333     444444444444443333444445


Q ss_pred             CcccEEEeeCcccccc--Chhhh--cccccccEEecccCccCCC---ccccccccCCccEEEcCCCcccCCCC-cccccc
Q 039967          237 SSLRALYLYNNGLYSF--VPEEI--RYLTSLSELELCTNHLSGV---IPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNL  308 (445)
Q Consensus       237 ~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~  308 (445)
                      ++|++|++++|.+...  .+..+  ..+++|++|++++|.+...   ....+..+++|++|++++|.+.+..+ ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            5555555555443221  01111  3445555555555555421   11222344566666666666554432 233344


Q ss_pred             CccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCee
Q 039967          309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL  388 (445)
Q Consensus       309 ~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  388 (445)
                      ++|+.|++++|.+.                    ..|..+.  ++|++|++++|.+++. |. +..+++|++|++++|++
T Consensus       253 ~~L~~L~Ls~N~l~--------------------~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK--------------------QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             TTCCEEECTTSCCS--------------------SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred             CCCCEEECCCCccC--------------------hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence            55555555555443                    2222222  4455555555555533 33 45555555555555554


Q ss_pred             e
Q 039967          389 S  389 (445)
Q Consensus       389 ~  389 (445)
                      .
T Consensus       309 ~  309 (312)
T 1wwl_A          309 L  309 (312)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.1e-23  Score=201.68  Aligned_cols=233  Identities=21%  Similarity=0.175  Sum_probs=126.1

Q ss_pred             CCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEE
Q 039967          140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALG  219 (445)
Q Consensus       140 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  219 (445)
                      +++|++|++++|.+....|..|..+++|++|++++|.+.+..|  +..+++|++|++++|.+... +    ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence            3467777777776665555566666777777777766654333  56666666666666655521 1    125555555


Q ss_pred             ccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccC
Q 039967          220 LHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG  299 (445)
Q Consensus       220 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  299 (445)
                      +++|.+.....   ..+++|+.|++++|.+....+..+..+                        ++|+.|++++|.+.+
T Consensus       106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l------------------------~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A          106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCR------------------------SRVQYLDLKLNEIDT  158 (487)
T ss_dssp             CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGG------------------------SSEEEEECTTSCCCE
T ss_pred             CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCC------------------------CCCCEEECCCCCCCC
Confidence            55555442221   123444555555544444333344444                        444444444444443


Q ss_pred             CCCcccc-ccCccceeeccCccccccc---cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccc
Q 039967          300 PIPKSFK-NLTSVERVLLNQNNLSGKV---NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL  375 (445)
Q Consensus       300 ~~~~~~~-~~~~L~~L~l~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  375 (445)
                      ..+..+. .+++|+.|++++|.+.+..   .+++|+.|++++|.+++ .+..+..+++|+.|++++|.+. .+|..+..+
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l  236 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             cChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence            3333332 3444444444444433221   13344444444444443 2233566677777777777776 355566667


Q ss_pred             cCCCEEEccCCeee-cccchhhcCCccCceeecC
Q 039967          376 FSLNKLILNLNQLS-GGMPLELGSLIELQYLDLS  408 (445)
Q Consensus       376 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~  408 (445)
                      ++|+.|++++|++. +..|..+..++.|+.++++
T Consensus       237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            77777777777775 3445556666777777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.2e-21  Score=173.30  Aligned_cols=202  Identities=25%  Similarity=0.278  Sum_probs=120.0

Q ss_pred             CCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecc
Q 039967          190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC  269 (445)
Q Consensus       190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  269 (445)
                      ..+.++++++.++ ..|..+.  +.+++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4567777777766 3444332  567777777777665555566667777777777776666555555666666666666


Q ss_pred             cCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcccc
Q 039967          270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIG  349 (445)
Q Consensus       270 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  349 (445)
                      +|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.                   ...+..+.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~~~~~~  154 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------------------SLPKGVFD  154 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTT
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------------------ccCHhHcc
Confidence            66666544455555666666666666665444444555555555555444332                   22333455


Q ss_pred             CCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       350 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      .+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|++.
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            5666666666666666555555566666666666666665443444555666666666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=3.6e-23  Score=198.17  Aligned_cols=229  Identities=21%  Similarity=0.167  Sum_probs=146.4

Q ss_pred             CCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecc
Q 039967          190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC  269 (445)
Q Consensus       190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  269 (445)
                      +|+.|++++|.+....+..+..+++|++|++++|.+....+  +..+++|++|++++|.+....     ..++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            44444444444444334444455555555555554432221  555666666666666655432     22678888888


Q ss_pred             cCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc------cCCCcceEEcccCccccC
Q 039967          270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------NVPKLGTFIISVNNISES  343 (445)
Q Consensus       270 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~L~~L~l~~~~~~~~  343 (445)
                      +|.+....+.   .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..      .+++|+.|++++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            8877754432   3578999999999998777888889999999999999876421      256777777777776644


Q ss_pred             CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc-cccCccccC
Q 039967          344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK-SSIPKSIGN  422 (445)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~  422 (445)
                      .  ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +..+..+..
T Consensus       185 ~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 K--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             E--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             c--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            2  22346777777777777764333 4666777777777777776 35556666677777777777766 334455566


Q ss_pred             CCCccEEeCC
Q 039967          423 LLRLCYLDLS  432 (445)
Q Consensus       423 ~~~L~~l~l~  432 (445)
                      ++.|+.+++.
T Consensus       261 l~~L~~l~~~  270 (487)
T 3oja_A          261 NQRVQTVAKQ  270 (487)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCCCcEEecc
Confidence            6666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=2.3e-21  Score=172.29  Aligned_cols=205  Identities=24%  Similarity=0.270  Sum_probs=149.3

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967          117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL  196 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  196 (445)
                      ++|++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46777777777777555556777777888888777776555556777778888888877776655566777788888888


Q ss_pred             cCCccCCCCCccccCCCCcCEEEccCccccCC-CCccccCCCcccEEEeeCccccccChhhhccccccc----EEecccC
Q 039967          197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGV-IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS----ELELCTN  271 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~  271 (445)
                      .+|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+++++    .+++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            87777765555677778888888888777643 356777778888888888887776666666666666    7888888


Q ss_pred             ccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccc
Q 039967          272 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS  322 (445)
Q Consensus       272 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  322 (445)
                      .+....+..+.. .+|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            777544433333 47888888888888666666778888888888888776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=6.7e-22  Score=175.08  Aligned_cols=230  Identities=23%  Similarity=0.257  Sum_probs=152.9

Q ss_pred             CCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEe
Q 039967          165 KSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL  244 (445)
Q Consensus       165 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  244 (445)
                      .++..+++..+.+...  .....+++|+.|.+.++.+.. . ..+..+++|+.|++++|.+...  ..+..+++|++|++
T Consensus        19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            3444555555554322  234567788888888887763 2 3466778888888888877632  35667777777777


Q ss_pred             eCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc
Q 039967          245 YNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK  324 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  324 (445)
                      ++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.  
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--  170 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--  170 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--
Confidence            777777666656667777777777777776555555666777777777777766555555556666666665555443  


Q ss_pred             ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCce
Q 039967          325 VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQY  404 (445)
Q Consensus       325 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  404 (445)
                                       +..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.       +.+++|+.
T Consensus       171 -----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~  226 (272)
T 3rfs_A          171 -----------------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRY  226 (272)
T ss_dssp             -----------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHH
T ss_pred             -----------------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHH
Confidence                             334445667777888888888777666666777778888888877665       23556777


Q ss_pred             eecCCCccccccCccccCCCCc
Q 039967          405 LDLSTNKLKSSIPKSIGNLLRL  426 (445)
Q Consensus       405 L~l~~~~~~~~~~~~~~~~~~L  426 (445)
                      |++.+|.+++..|..+..++..
T Consensus       227 l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          227 LSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             HHHHHHHTGGGBBCTTSCBCGG
T ss_pred             HHHHHHhCCCcccCcccccCCC
Confidence            7777777777777666655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=8.5e-21  Score=167.84  Aligned_cols=181  Identities=29%  Similarity=0.295  Sum_probs=88.5

Q ss_pred             CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEcc
Q 039967          142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH  221 (445)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  221 (445)
                      ++++|+++++.+....+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            44444444444443333344444444444444444443322333444445555555444443333344444555555555


Q ss_pred             CccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCC
Q 039967          222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI  301 (445)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  301 (445)
                      +|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            55444443344445555555555555554444444445555555555555555444444555555555555555555444


Q ss_pred             CccccccCccceeeccCcccc
Q 039967          302 PKSFKNLTSVERVLLNQNNLS  322 (445)
Q Consensus       302 ~~~~~~~~~L~~L~l~~~~~~  322 (445)
                      +..+..+++|+.|++++|.+.
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBC
T ss_pred             HHHhccccCCCEEEecCCCee
Confidence            444555555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.1e-20  Score=168.49  Aligned_cols=201  Identities=25%  Similarity=0.275  Sum_probs=88.4

Q ss_pred             cCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccE
Q 039967          186 GNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSE  265 (445)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  265 (445)
                      ..+++++++++.++.++ ..|..+.  +.++.|++++|.+....+..+..+++|+.|++++|.+......  ..+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            44555566666555555 2332222  4455555555555433334445555555555555544432111  33444444


Q ss_pred             EecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCC
Q 039967          266 LELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP  345 (445)
Q Consensus       266 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  345 (445)
                      |++++|.+. ..+..+..+++|++|++++|++.+..+..|..+++|+.|++++|++.                   ...+
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~  141 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------------------TLPP  141 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------------------CCCT
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-------------------ccCh
Confidence            444444443 22223333444444444444444333333333333333333333222                   2222


Q ss_pred             ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967          346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL  412 (445)
Q Consensus       346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  412 (445)
                      ..+..+++|++|++++|.++...+..+..+++|+.|++++|++. .+|..+..+++|+.|++++|++
T Consensus       142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            33344445555555555544333333444455555555555444 3344444444455555554444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.8e-22  Score=184.98  Aligned_cols=247  Identities=18%  Similarity=0.169  Sum_probs=151.6

Q ss_pred             CcCEEeCCCccccccccccccCC--CCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCC-CCccccCCCcccEE
Q 039967          166 SLLQLDLSENQLIGSIPLSFGNL--SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV-IPSSIGNLSSLRAL  242 (445)
Q Consensus       166 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L  242 (445)
                      .++.++++++.+.   +..+..+  +.++.+.+.++.+....+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4778888887754   4455555  7888999988888765554 45678888888888876543 44556778888888


Q ss_pred             EeeCccccccChhhhcccccccEEecccC-ccCCC-ccccccccCCccEEEcCCC-cccCC-CCccccccC-ccceeecc
Q 039967          243 YLYNNGLYSFVPEEIRYLTSLSELELCTN-HLSGV-IPHSIGNLTGLLLLNMCEN-HLSGP-IPKSFKNLT-SVERVLLN  317 (445)
Q Consensus       243 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~  317 (445)
                      ++++|.+....+..+..+++|++|++++| .+... .+..+..+++|++|++++| .+.+. .+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            88888776655666777888888888888 45432 3444667788888888888 66643 355566777 78888887


Q ss_pred             Ccc--cccc------ccCCCcceEEcccCc-cccCCCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEccCCe
Q 039967          318 QNN--LSGK------VNVPKLGTFIISVNN-ISESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLILNLNQ  387 (445)
Q Consensus       318 ~~~--~~~~------~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~  387 (445)
                      +|.  +.+.      ..+++|+.|++++|. +++..+..+..+++|++|++++|. +.+.....+.++++|+.|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            773  3211      125555555555555 343344444555555555555553 22222223445555555555555 


Q ss_pred             eecccchhhcCC-ccCceeecCCCccccccCccc
Q 039967          388 LSGGMPLELGSL-IELQYLDLSTNKLKSSIPKSI  420 (445)
Q Consensus       388 ~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~  420 (445)
                      +...   .+..+ .+++.|++++|++++..+..+
T Consensus       283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          283 VPDG---TLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence            2211   11111 234455555555554444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=5.8e-22  Score=183.09  Aligned_cols=246  Identities=17%  Similarity=0.158  Sum_probs=149.7

Q ss_pred             EeCCCccccccccccccCCCCCcEEEccCCccCCCCC----ccccCCC-CcCEEEccCccccCCCCccccCC-----Ccc
Q 039967          170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLP----PILGNLK-SLSALGLHINQLSGVIPSSIGNL-----SSL  239 (445)
Q Consensus       170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L  239 (445)
                      +.++.+.+.+..|..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+.......+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4667777776666655666669999999888876555    5666777 78888888888775554444443     788


Q ss_pred             cEEEeeCccccccChhhhc----cc-ccccEEecccCccCCCcccccc----c-cCCccEEEcCCCcccCCCCc----cc
Q 039967          240 RALYLYNNGLYSFVPEEIR----YL-TSLSELELCTNHLSGVIPHSIG----N-LTGLLLLNMCENHLSGPIPK----SF  305 (445)
Q Consensus       240 ~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~----~~  305 (445)
                      ++|++++|.+....+..+.    .. ++|++|++++|.+.......+.    . .++|++|++++|.+.+....    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            8888888887765554333    33 6788888888887755544332    2 35788888888877754332    23


Q ss_pred             cccC-ccceeeccCcccccccc---------C-CCcceEEcccCccccCCCc----cccC-CCCCcEEECCCCccccccc
Q 039967          306 KNLT-SVERVLLNQNNLSGKVN---------V-PKLGTFIISVNNISESIPP----EIGD-SPKLQVLDLSSNNIVGEIP  369 (445)
Q Consensus       306 ~~~~-~L~~L~l~~~~~~~~~~---------~-~~L~~L~l~~~~~~~~~~~----~~~~-~~~L~~L~l~~~~~~~~~~  369 (445)
                      ...+ .|++|++++|.+.+...         + ++|+.|++++|.+......    .+.. .++|++|++++|.+.+..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3444 77777777777654332         2 3666666666665542211    2222 3456666666666554333


Q ss_pred             ----hhhccccCCCEEEccCCeeecc-------cchhhcCCccCceeecCCCccccc
Q 039967          370 ----VQLGKLFSLNKLILNLNQLSGG-------MPLELGSLIELQYLDLSTNKLKSS  415 (445)
Q Consensus       370 ----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~  415 (445)
                          ..+..+++|+.|++++|.+.+.       ++..+..+++|+.||+++|++...
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                2234455666666666653211       122344555566666666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=4.3e-20  Score=164.67  Aligned_cols=203  Identities=25%  Similarity=0.311  Sum_probs=122.5

Q ss_pred             ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT  192 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  192 (445)
                      +.++++++.++++++.++ .+|..+.  ++++.|++++|.+....+..|..+++|+.|++++|.+... +. ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence            444555666666666555 3333332  4566666666665544455566666666666666665532 22 24556666


Q ss_pred             EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967          193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH  272 (445)
Q Consensus       193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  272 (445)
                      +|++++|.+. ..|..+..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            6666666665 445555566666666666666664444556666666666666666666555556666667777777766


Q ss_pred             cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccc
Q 039967          273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS  322 (445)
Q Consensus       273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  322 (445)
                      +.......+..+++|+.|++++|.+. .+|..+...+.|+.+.+++|.+.
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            66555555566677777777777666 45555555666777777776665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.8e-20  Score=165.91  Aligned_cols=205  Identities=26%  Similarity=0.305  Sum_probs=109.9

Q ss_pred             CCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEE
Q 039967          139 NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL  218 (445)
Q Consensus       139 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  218 (445)
                      .+++|+.|.+.++.+. . ...+..+++|++|++++|.+.. . ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~-~-~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-S-VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCC-C-CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcc-c-ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3444445555444443 1 1224445555555555555432 1 234455555555555555554444444555555555


Q ss_pred             EccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCccc
Q 039967          219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS  298 (445)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  298 (445)
                      ++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            55555555444444555566666666666655544445556666666666666666554455566667777777777666


Q ss_pred             CCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcccc
Q 039967          299 GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIG  349 (445)
Q Consensus       299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  349 (445)
                      +..+..+..+++|+.|++++|.+..  .++.++.+++..+.+.+..|.++.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~--~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDC--TCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCC--CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccc--cCcHHHHHHHHHHhCCCcccCccc
Confidence            5555556666777777776665531  233444444444444444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=2.7e-22  Score=185.33  Aligned_cols=257  Identities=16%  Similarity=0.127  Sum_probs=147.0

Q ss_pred             EEccCCcccCCCCccccCCCCCceEEeccCccccccC----ccccCCC-CcCEEeCCCccccccccccccCC-----CCC
Q 039967          122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP----SIIGNLK-SLLQLDLSENQLIGSIPLSFGNL-----SSL  191 (445)
Q Consensus       122 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L  191 (445)
                      .+++++.++...|..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+....+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4666777765555555555568888888777764444    5566666 77777777777765555555443     677


Q ss_pred             cEEEccCCccCCCCCcc----ccCC-CCcCEEEccCccccCCCCcc----ccC-CCcccEEEeeCccccccChh----hh
Q 039967          192 TLMSLFNNSLSGSLPPI----LGNL-KSLSALGLHINQLSGVIPSS----IGN-LSSLRALYLYNNGLYSFVPE----EI  257 (445)
Q Consensus       192 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~----~~  257 (445)
                      ++|++++|.++...+..    +... ++|++|++++|.+.......    +.. .++|++|++++|.+......    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            77777777766443332    2233 56666666666665333222    222 24566666666655532221    22


Q ss_pred             cccc-cccEEecccCccCCCccccc----ccc-CCccEEEcCCCcccCCC----CccccccCccceeeccCccccccccC
Q 039967          258 RYLT-SLSELELCTNHLSGVIPHSI----GNL-TGLLLLNMCENHLSGPI----PKSFKNLTSVERVLLNQNNLSGKVNV  327 (445)
Q Consensus       258 ~~~~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~  327 (445)
                      ...+ +|++|++++|.+....+..+    ... ++|++|++++|.+.+..    +..+...                  .
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~------------------~  224 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------------------P  224 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS------------------C
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC------------------C
Confidence            2232 55566665555543333222    222 35555555555554321    1122221                  2


Q ss_pred             CCcceEEcccCccccCCC----ccccCCCCCcEEECCCCccccc-------cchhhccccCCCEEEccCCeeecccchhh
Q 039967          328 PKLGTFIISVNNISESIP----PEIGDSPKLQVLDLSSNNIVGE-------IPVQLGKLFSLNKLILNLNQLSGGMPLEL  396 (445)
Q Consensus       328 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  396 (445)
                      ++|+.|++++|.++...+    ..+..+++|++|++++|.+.+.       .+..+.++++|+.|++++|++....+..+
T Consensus       225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            345555555555544332    3456789999999999984432       33456778999999999999875544433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.3e-22  Score=189.46  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             cCccccCCCCcCEEeCCCcccccccc----ccccCCCCCcEEEccCCccCC---CCCcc-------ccCCCCcCEEEccC
Q 039967          157 IPSIIGNLKSLLQLDLSENQLIGSIP----LSFGNLSSLTLMSLFNNSLSG---SLPPI-------LGNLKSLSALGLHI  222 (445)
Q Consensus       157 ~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~---~~~~~-------~~~l~~L~~L~l~~  222 (445)
                      ++..+..+++|++|++++|.+....+    ..+..+++|++|++++|.+..   ..|..       +..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            34445555566666666665543322    224455666666665543321   11211       23455566666665


Q ss_pred             ccccCC----CCccccCCCcccEEEeeCcccc
Q 039967          223 NQLSGV----IPSSIGNLSSLRALYLYNNGLY  250 (445)
Q Consensus       223 ~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  250 (445)
                      |.+...    .+..+..+++|++|++++|.+.
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            555431    2223445566666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=6.6e-20  Score=159.10  Aligned_cols=197  Identities=18%  Similarity=0.187  Sum_probs=134.1

Q ss_pred             CCcEEeccCcccCCCCCccccCCCCCcEEEecCcc-cccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCcc
Q 039967           32 NLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQ-LHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP  110 (445)
Q Consensus        32 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~  110 (445)
                      +++.|++++|.+....+..+.++++|+.|++++|. +....+..+.++++|++++++++             +.+....+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~-------------n~l~~i~~   98 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-------------RNLTYIDP   98 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE-------------TTCCEECT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC-------------CCeeEcCH
Confidence            67888888887776666677778888888888775 66544556666665555544430             33343444


Q ss_pred             ccccCCCCCcEEEccCCcccCCCCccccCCCCCc---eEEeccC-ccccccCccccCCCCcC-EEeCCCccccccccccc
Q 039967          111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD---KLYLYSN-SFSGSIPSIIGNLKSLL-QLDLSENQLIGSIPLSF  185 (445)
Q Consensus       111 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l  185 (445)
                      ..|.++++|++|++++|.++. +|. +..+++|+   +|++++| .+....+..|..+++|+ .|++++|.+....+..+
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence            567777888888888887774 454 77777777   8888887 77655555677788888 88888887763333333


Q ss_pred             cCCCCCcEEEccCCc-cCCCCCccccCC-CCcCEEEccCccccCCCCccccCCCcccEEEeeCc
Q 039967          186 GNLSSLTLMSLFNNS-LSGSLPPILGNL-KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN  247 (445)
Q Consensus       186 ~~l~~L~~L~l~~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  247 (445)
                      .. ++|+.|++++|+ +....+..+..+ ++|+.+++++|.+......   .+++|+.|++.++
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            33 778888888884 765555667777 7888888888877643322   4567777777654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=4.1e-21  Score=175.87  Aligned_cols=248  Identities=17%  Similarity=0.179  Sum_probs=176.8

Q ss_pred             CCCcEEEccCCccCCCCCccccCC--CCcCEEEccCccccCCCCccccCCCcccEEEeeCcccccc-ChhhhcccccccE
Q 039967          189 SSLTLMSLFNNSLSGSLPPILGNL--KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF-VPEEIRYLTSLSE  265 (445)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~  265 (445)
                      ..++.+++.++.+.   +..+..+  +.++.++++++.+....+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            34778888877654   3445555  7888888888887654443 45678888888888877653 5566778888888


Q ss_pred             EecccCccCCCccccccccCCccEEEcCCC-cccCC-CCccccccCccceeeccCc-ccccc------ccCC-CcceEEc
Q 039967          266 LELCTNHLSGVIPHSIGNLTGLLLLNMCEN-HLSGP-IPKSFKNLTSVERVLLNQN-NLSGK------VNVP-KLGTFII  335 (445)
Q Consensus       266 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~------~~~~-~L~~L~l  335 (445)
                      |++++|.+....+..+..+++|++|++++| .+.+. .+..+..+++|++|++++| .+.+.      ..++ +|+.|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            888888776556667777888888888888 45532 4555777888888888888 76642      2377 8888888


Q ss_pred             ccCc--cc-cCCCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEccCCe-eecccchhhcCCccCceeecCCC
Q 039967          336 SVNN--IS-ESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSLIELQYLDLSTN  410 (445)
Q Consensus       336 ~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~  410 (445)
                      ++|.  ++ ...+..+..+++|++|++++|. +++..+..+.++++|++|++++|. +.......+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            8884  44 2334455678888888888888 666667778888888888888885 32222235677888888888888


Q ss_pred             ccccccCccccCC-CCccEEeCCCCcccccCCCCC
Q 039967          411 KLKSSIPKSIGNL-LRLCYLDLSNNQFGHKILVEL  444 (445)
Q Consensus       411 ~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~  444 (445)
                       +..   ..+..+ ..++.|++.+|++++.+|.++
T Consensus       283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             -cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence             432   333333 236666688888888888654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.7e-19  Score=157.69  Aligned_cols=159  Identities=28%  Similarity=0.267  Sum_probs=84.1

Q ss_pred             cccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccc
Q 039967          262 SLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNIS  341 (445)
Q Consensus       262 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~  341 (445)
                      +++.|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+                   .
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~   96 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-------------------A   96 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-------------------C
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-------------------c
Confidence            344444444444433333344444444444444444433333344444444444444333                   2


Q ss_pred             cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCcccc
Q 039967          342 ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIG  421 (445)
Q Consensus       342 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  421 (445)
                      ...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++....+..|.
T Consensus        97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  176 (251)
T 3m19_A           97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD  176 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence            33334455556666666666666644444555666666666666666544444566666666666666666655555566


Q ss_pred             CCCCccEEeCCCCccccc
Q 039967          422 NLLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       422 ~~~~L~~l~l~~~~~~~~  439 (445)
                      .+++|++|++.+|+|...
T Consensus       177 ~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          177 RLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCTTCCEEECCSCCBCTT
T ss_pred             CCCCCCEEEeeCCceeCC
Confidence            666666666666666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.3e-19  Score=157.32  Aligned_cols=195  Identities=21%  Similarity=0.312  Sum_probs=115.4

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCc-cccccCccccCCCCcCEEeCCC-ccccccccccccCCCCCcEEE
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS-FSGSIPSIIGNLKSLLQLDLSE-NQLIGSIPLSFGNLSSLTLMS  195 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~  195 (445)
                      ++++|+++++.++...+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+....+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            66666776666665555566666677777776665 5544444566666777777766 666544445566666666666


Q ss_pred             ccCCccCCCCCccccCCCCcC---EEEccCc-cccCCCCccccCCCccc-EEEeeCccccccChhhhcccccccEEeccc
Q 039967          196 LFNNSLSGSLPPILGNLKSLS---ALGLHIN-QLSGVIPSSIGNLSSLR-ALYLYNNGLYSFVPEEIRYLTSLSELELCT  270 (445)
Q Consensus       196 l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  270 (445)
                      +++|.+.. .|. +..+++|+   .+++++| .+.......|..+++|+ .+++++|.+.......+.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            66666653 333 55555555   6666666 55544444566666666 6666666665544444443 5666666666


Q ss_pred             Cc-cCCCcccccccc-CCccEEEcCCCcccCCCCccccccCccceeeccC
Q 039967          271 NH-LSGVIPHSIGNL-TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQ  318 (445)
Q Consensus       271 ~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (445)
                      |. +....+..+..+ ++|+.|++++|.+....+.   .+++|+.|.+++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~  235 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN  235 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence            63 554444555555 6666666666666532222   344555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1e-19  Score=163.88  Aligned_cols=192  Identities=22%  Similarity=0.367  Sum_probs=146.5

Q ss_pred             ccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCcc
Q 039967          209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL  288 (445)
Q Consensus       209 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  288 (445)
                      ...+++|++|+++++.+... + .+..+++|+.|++++|.+....+  +..+++|++|++++|.+...  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            45678999999999988743 2 57788999999999999887544  78899999999999988753  3678889999


Q ss_pred             EEEcCCCcccCCCCccccccCccceeeccCccccccc---cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc
Q 039967          289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV---NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV  365 (445)
Q Consensus       289 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  365 (445)
                      +|++++|.+.+ .+ .+..+++|+.|++++|.+.+..   .+++|+.|++++|++.+..+  +..+++|++|++++|.+.
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            99999999875 33 3788899999999998876543   36677777887777764322  667777888888877776


Q ss_pred             cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccc
Q 039967          366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS  414 (445)
Q Consensus       366 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  414 (445)
                      +..+  +..+++|+.|++++|++.+..  .+..+++|+.|++++|+++.
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            4433  667777888888877776433  36677778888887777763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=3.2e-19  Score=160.62  Aligned_cols=195  Identities=29%  Similarity=0.352  Sum_probs=115.8

Q ss_pred             cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967           27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF  106 (445)
Q Consensus        27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~  106 (445)
                      ...+++|+.|++++|.+.+ .+ .+..+++|++|++++|.+.+. +. +..+++|+++++++|              .+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n--------------~l~   98 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGN--------------PLK   98 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSC--------------CCS
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCC--------------cCC
Confidence            3446667777777776663 23 466677777777777766532 22 455554444433333              222


Q ss_pred             CCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccccc
Q 039967          107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG  186 (445)
Q Consensus       107 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  186 (445)
                      . + ..+..+++|++|++++|.++.. + .+..+++|++|++++|.+... +. +..+++|+.|++++|.+... +. +.
T Consensus        99 ~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~  170 (308)
T 1h6u_A           99 N-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LA  170 (308)
T ss_dssp             C-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred             C-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hc
Confidence            2 2 2466667777777777776632 2 366677777777777766532 22 66667777777777766532 22 66


Q ss_pred             CCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc
Q 039967          187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS  251 (445)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  251 (445)
                      .+++|+.|++++|.+....+  +..+++|+.|++++|.+....  .+..+++|+.|++++|.+..
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            66777777777776663322  556666777777766665332  35566666666666666544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=2.8e-20  Score=167.97  Aligned_cols=205  Identities=20%  Similarity=0.241  Sum_probs=140.3

Q ss_pred             CCCcCEEEccCccccCCCCccc--cCCCcccEEEeeCccccccCh----hhhcccccccEEecccCccCCCccccccccC
Q 039967          212 LKSLSALGLHINQLSGVIPSSI--GNLSSLRALYLYNNGLYSFVP----EEIRYLTSLSELELCTNHLSGVIPHSIGNLT  285 (445)
Q Consensus       212 l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  285 (445)
                      +++|++|++++|.+....+..+  ..+++|++|++++|.+....+    ..+..+++|++|++++|.+....+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4568888888888776666665  677788888888887765322    2233567777777777777666666677777


Q ss_pred             CccEEEcCCCcccCC----CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCc-cccCCCCCcEEECC
Q 039967          286 GLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP-EIGDSPKLQVLDLS  360 (445)
Q Consensus       286 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~  360 (445)
                      +|++|++++|++.+.    ....+..+++|++|++++|.+....                 ..+. .+..+++|++|+++
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----------------~~~~~l~~~l~~L~~L~Ls  232 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT-----------------GVCAALAAAGVQPHSLDLS  232 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH-----------------HHHHHHHHHTCCCSSEECT
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH-----------------HHHHHHHhcCCCCCEEECC
Confidence            777777777765421    1222345666666666666553111                 0011 23566888888888


Q ss_pred             CCccccccchhhccc---cCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          361 SNNIVGEIPVQLGKL---FSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       361 ~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +|.+.+..|..+..+   ++|++|++++|++. .+|..+.  ++|+.|++++|++++. + .+..+++|++|++++|+++
T Consensus       233 ~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          233 HNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTS
T ss_pred             CCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCC
Confidence            888886666666655   68888888888888 5566553  7899999999988854 2 2677889999999999887


Q ss_pred             c
Q 039967          438 H  438 (445)
Q Consensus       438 ~  438 (445)
                      +
T Consensus       308 ~  308 (310)
T 4glp_A          308 V  308 (310)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=1e-18  Score=152.62  Aligned_cols=179  Identities=26%  Similarity=0.283  Sum_probs=106.6

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      ...++++++++.+..++.. +.  ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+           
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------   79 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-----------   79 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----------
T ss_pred             CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-----------
Confidence            3567888888877766433 32  578888888888887777778888888888888887765444334           


Q ss_pred             cCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCC
Q 039967           87 CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS  166 (445)
Q Consensus        87 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  166 (445)
                                                 ..+++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++
T Consensus        80 ---------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           80 ---------------------------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             ---------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ---------------------------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence                                       44445555555555555444444455555555555555554333334455555


Q ss_pred             cCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCcccc
Q 039967          167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS  226 (445)
Q Consensus       167 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  226 (445)
                      |+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.+++++|.+.
T Consensus       133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            555555555555433334555555555555555555444445555566666666665553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=3.9e-21  Score=179.36  Aligned_cols=188  Identities=23%  Similarity=0.259  Sum_probs=97.2

Q ss_pred             ccCCCCCcEEEccCCcccC----CCCccccCCCCCceEEeccCccccccCcc----ccCC---------CCcCEEeCCCc
Q 039967          113 LGNLNSLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNSFSGSIPSI----IGNL---------KSLLQLDLSEN  175 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~  175 (445)
                      +..+++|++|++++|.++.    .++..+..+++|++|++++|.+....+..    +..+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            3556666666666666654    23445556666666666666654222222    2222         66666666666


Q ss_pred             cccc-ccc---ccccCCCCCcEEEccCCccCC-----CCCccccCCCCcCEEEccCcccc----CCCCccccCCCcccEE
Q 039967          176 QLIG-SIP---LSFGNLSSLTLMSLFNNSLSG-----SLPPILGNLKSLSALGLHINQLS----GVIPSSIGNLSSLRAL  242 (445)
Q Consensus       176 ~~~~-~~~---~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L  242 (445)
                      .+.. ..+   ..+..+++|++|.+++|.+..     ..+..+..+++|+.|++++|.+.    ...+..+..+++|+.|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            6542 222   234455666666666665541     11224455566666666666553    1223344555566666


Q ss_pred             EeeCcccccc----Chhhhc--ccccccEEecccCccCC----Cccccc-cccCCccEEEcCCCcccCC
Q 039967          243 YLYNNGLYSF----VPEEIR--YLTSLSELELCTNHLSG----VIPHSI-GNLTGLLLLNMCENHLSGP  300 (445)
Q Consensus       243 ~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~~  300 (445)
                      ++++|.+...    .+..+.  .+++|+.|++++|.+..    ..+..+ ..+++|++|++++|.+.+.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            6666655432    122222  15556666666665553    123333 3345666666666655543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=9.8e-19  Score=157.87  Aligned_cols=225  Identities=20%  Similarity=0.213  Sum_probs=168.1

Q ss_pred             CCcCEEeCCCcccccccc---ccccCCCCCcEEEccCCccCCCCCccc--cCCCCcCEEEccCccccCCCC----ccccC
Q 039967          165 KSLLQLDLSENQLIGSIP---LSFGNLSSLTLMSLFNNSLSGSLPPIL--GNLKSLSALGLHINQLSGVIP----SSIGN  235 (445)
Q Consensus       165 ~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~  235 (445)
                      ..++.+.+.++.+.....   ..+..+++|++|++.+|.+....+..+  ..+++|++|++++|.+....+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            346667776665432110   012245779999999999988888777  889999999999999875333    23456


Q ss_pred             CCcccEEEeeCccccccChhhhcccccccEEecccCccCCC--c--cccccccCCccEEEcCCCcccCCCCc----cccc
Q 039967          236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV--I--PHSIGNLTGLLLLNMCENHLSGPIPK----SFKN  307 (445)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~  307 (445)
                      +++|++|++++|.+....+..+..+++|++|++++|.+...  .  ...+..+++|++|++++|.+.. .+.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            89999999999999888888889999999999999987532  1  2234678899999999998862 222    2456


Q ss_pred             cCccceeeccCccccccccCCCcceEEcccCccccCCCccccCC---CCCcEEECCCCccccccchhhccccCCCEEEcc
Q 039967          308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS---PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN  384 (445)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  384 (445)
                      +++|++|++++|.+.                   +..|..+..+   ++|++|++++|.++ .+|..+.  ++|+.|+++
T Consensus       223 l~~L~~L~Ls~N~l~-------------------~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls  280 (310)
T 4glp_A          223 GVQPHSLDLSHNSLR-------------------ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS  280 (310)
T ss_dssp             TCCCSSEECTTSCCC-------------------CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred             CCCCCEEECCCCCCC-------------------ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence            677777777777654                   3334444444   78999999999998 5565553  799999999


Q ss_pred             CCeeecccchhhcCCccCceeecCCCcccc
Q 039967          385 LNQLSGGMPLELGSLIELQYLDLSTNKLKS  414 (445)
Q Consensus       385 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  414 (445)
                      +|++.+. |. +..+++|+.|++++|+++.
T Consensus       281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999843 43 6778999999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.9e-18  Score=145.30  Aligned_cols=195  Identities=24%  Similarity=0.212  Sum_probs=124.4

Q ss_pred             CEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCC
Q 039967          216 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN  295 (445)
Q Consensus       216 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  295 (445)
                      +.++.+++.+... +..  ..+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            3455555544422 222  2346777777777766655555666677777777777666555555566667777777777


Q ss_pred             cccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccc
Q 039967          296 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL  375 (445)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  375 (445)
                      .+.+..+..+..+++|+.|++++|.+.                   ...+..+..+++|++|++++|.+++..+..+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l  147 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQ-------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  147 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCc-------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence            666444444555566666655555443                   3344456777888888888888876666667778


Q ss_pred             cCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967          376 FSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE  443 (445)
Q Consensus       376 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  443 (445)
                      ++|+.|++++|++.       +.+++|+.|++++|++++..|..+..++.    ++..|...+..++.
T Consensus       148 ~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~  204 (208)
T 2o6s_A          148 TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS  204 (208)
T ss_dssp             TTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred             CCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence            88888888888665       24567888888888888777777766655    55556555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=8.8e-18  Score=142.34  Aligned_cols=179  Identities=26%  Similarity=0.246  Sum_probs=103.9

Q ss_pred             EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967          193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH  272 (445)
Q Consensus       193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  272 (445)
                      .++..++.++ ..|..+  .++++.|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            4444444444 223222  2466666666666664444455666667777776666665555555666666777776666


Q ss_pred             cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967          273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP  352 (445)
Q Consensus       273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  352 (445)
                      +....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.                   +..+..+..++
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------~~~~~~~~~l~  148 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------------------SVPDGVFDRLT  148 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------CCCTTTTTTCT
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------------------eeCHHHhccCC
Confidence            66554455566666777777666666444444555555555555555443                   22333455566


Q ss_pred             CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCc
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI  400 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  400 (445)
                      +|++|++++|++.       ..+++|+.|.+..|.+.+.+|..++.++
T Consensus       149 ~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          149 SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            6677777666554       2345666666666666666666555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=2.8e-17  Score=150.91  Aligned_cols=241  Identities=20%  Similarity=0.204  Sum_probs=149.2

Q ss_pred             ceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCC-ccccCCCCcCEE-Ecc
Q 039967          144 DKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSLSAL-GLH  221 (445)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L-~l~  221 (445)
                      +.+..++++++ .+|..+  .+++++|++++|.+..+.+..|.++++|++|++++|.+.+..+ ..|.+++++.++ ...
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666777766 556554  3578888888888775555567888888888888887754333 456677776654 444


Q ss_pred             CccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccC-ccCCCcccccccc-CCccEEEcCCCcccC
Q 039967          222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN-HLSGVIPHSIGNL-TGLLLLNMCENHLSG  299 (445)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~  299 (445)
                      .+.+....+..|..+++|+++++++|.+....+..+....++..+++.++ .+.......+..+ ..++.|++++|++..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            56666555667777778888888877776655545545556666666543 3433333334333 346667777776663


Q ss_pred             CCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCC
Q 039967          300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN  379 (445)
Q Consensus       300 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  379 (445)
                      ..+..| ..++|+++.+.++                  +.+....+..+..+++|++|++++|.++...+..   +..|+
T Consensus       169 i~~~~f-~~~~L~~l~l~~~------------------n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~  226 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDN------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLK  226 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTC------------------TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCC
T ss_pred             CChhhc-cccchhHHhhccC------------------CcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccch
Confidence            322222 2344555554432                  2233333456778888888888888887444333   45566


Q ss_pred             EEEccCCeeecccchhhcCCccCceeecCCC
Q 039967          380 KLILNLNQLSGGMPLELGSLIELQYLDLSTN  410 (445)
Q Consensus       380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  410 (445)
                      +|.+.++.....+| .+..+++|+.+++.++
T Consensus       227 ~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          227 KLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             EEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             HhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            66666665544556 4667788888888654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=1e-16  Score=147.10  Aligned_cols=207  Identities=17%  Similarity=0.190  Sum_probs=111.2

Q ss_pred             ceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCcccccc-CccccCCCCcCE-EeCC
Q 039967           96 ANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSI-PSIIGNLKSLLQ-LDLS  173 (445)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~  173 (445)
                      ++++.+++.++ .+|..+  .+++++|++++|.++...+..|.++++|++|++++|.+.... +.+|.++++++. +...
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34555555544 344433  246677777777776444456677777777777777654333 335566666554 3344


Q ss_pred             CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccC-ccccCCCCccccCCC-cccEEEeeCccccc
Q 039967          174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI-NQLSGVIPSSIGNLS-SLRALYLYNNGLYS  251 (445)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~  251 (445)
                      ++.+....+..|..+++|++|++.+|.+....+..+.....+..+++.. +.+.......|..+. .++.|++++|.+..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            4555555555666666777777766666644444444445555565544 233333333444432 45666666666655


Q ss_pred             cChhhhcccccccEEeccc-CccCCCccccccccCCccEEEcCCCcccCCCCcccc
Q 039967          252 FVPEEIRYLTSLSELELCT-NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK  306 (445)
Q Consensus       252 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  306 (445)
                      .....+ ...+++.+++.+ +.+.......+..+++|++|++++|++....+..+.
T Consensus       169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~  223 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  223 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred             CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence            433333 234556666653 334433334555666666666666665533333333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.2e-17  Score=145.41  Aligned_cols=170  Identities=28%  Similarity=0.444  Sum_probs=118.8

Q ss_pred             ccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccc
Q 039967          233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE  312 (445)
Q Consensus       233 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  312 (445)
                      +..+++|+.|++++|.+... + .+..+++|+.|++++|.+....+  +..+++|++|++++|.+.+ . ..+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            34567888888888887764 2 36778888999998888875443  7788888999998888774 2 3377788888


Q ss_pred             eeeccCcccccc---ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967          313 RVLLNQNNLSGK---VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS  389 (445)
Q Consensus       313 ~L~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  389 (445)
                      .|++++|.+.+.   ..+++|+.|++++|++...  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            888888876643   2356677777777766543  456666777777777777664433  666777777777777665


Q ss_pred             cccchhhcCCccCceeecCCCcccc
Q 039967          390 GGMPLELGSLIELQYLDLSTNKLKS  414 (445)
Q Consensus       390 ~~~~~~~~~~~~L~~L~l~~~~~~~  414 (445)
                      + ++ .+..+++|+.|++++|++..
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             C-Ch-hhccCCCCCEEECcCCcccC
Confidence            3 23 36666777777777776664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=7.2e-17  Score=137.62  Aligned_cols=134  Identities=25%  Similarity=0.282  Sum_probs=71.8

Q ss_pred             CCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcc
Q 039967          285 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI  364 (445)
Q Consensus       285 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  364 (445)
                      +.++.|++++|.+.+..+..|..+++|+.|++++|.+.                   ...+..+..+++|++|++++|.+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-------------------~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-------------------ELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-------------------EECTTTTTTCSSCCEEECCSSCC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-------------------CcCHHHhhCCcCCCEEECCCCcC
Confidence            45555555555555444444555555555555554433                   22334455555555555555555


Q ss_pred             ccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          365 VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       365 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +...+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|+++...+..|..+++|++|++++|+|.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5444444555555555555555555444555555555666666666555444445555555666666665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.9e-17  Score=137.76  Aligned_cols=153  Identities=18%  Similarity=0.255  Sum_probs=107.6

Q ss_pred             ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccC
Q 039967          259 YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVN  338 (445)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~  338 (445)
                      .+++|+.|++++|.+.. .+ .+..+++|++|++++|.+..  ...+..                   +++|+.|++++|
T Consensus        42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~-------------------l~~L~~L~l~~n   98 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISG-------------------LSNLERLRIMGK   98 (197)
T ss_dssp             HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTT-------------------CTTCCEEEEECT
T ss_pred             hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhc-------------------CCCCCEEEeECC
Confidence            34455555555555542 12 34455555555555553321  123333                   445555555556


Q ss_pred             ccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCe-eecccchhhcCCccCceeecCCCccccccC
Q 039967          339 NISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSLIELQYLDLSTNKLKSSIP  417 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  417 (445)
                      ++....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|+.|++++|.+.+.. 
T Consensus        99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-  175 (197)
T 4ezg_A           99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-  175 (197)
T ss_dssp             TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred             ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-
Confidence            6655566778899999999999999998788889999999999999998 55 455 6889999999999999998533 


Q ss_pred             ccccCCCCccEEeCCCCcccc
Q 039967          418 KSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       418 ~~~~~~~~L~~l~l~~~~~~~  438 (445)
                       .+..+++|++|++.+|++.+
T Consensus       176 -~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -TGGGCSSCCEEEECBC----
T ss_pred             -HhccCCCCCEEEeeCcccCC
Confidence             78899999999999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.72  E-value=6.3e-16  Score=144.29  Aligned_cols=238  Identities=12%  Similarity=0.061  Sum_probs=118.7

Q ss_pred             ccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCC
Q 039967          135 LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS  214 (445)
Q Consensus       135 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  214 (445)
                      .+|..+.+|+.+.+.++... ....+|.++.+|+.+.+..+ +..+...++..++.|+.+.+..+...  ..........
T Consensus       156 ~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~  231 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG  231 (394)
T ss_dssp             TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred             hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence            34444455555554433211 33344445555555555433 22233334444444444444333221  1111222344


Q ss_pred             cCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCC
Q 039967          215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE  294 (445)
Q Consensus       215 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  294 (445)
                      |+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+......+   ....+..+.+|+.+.+.+
T Consensus       232 l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          232 VKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred             CceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---cccccccccccccccccc
Confidence            5555543322 112333455555666655554322 22334455555555555543322   223455566666666654


Q ss_pred             CcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhcc
Q 039967          295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGK  374 (445)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  374 (445)
                      + +......+|.+|.+|+.+++..+ +                   ......++.+|.+|+.+++..+ ++.....+|.+
T Consensus       307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v-------------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          307 S-VKFIGEEAFESCTSLVSIDLPYL-V-------------------EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-C-------------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             c-cceechhhhcCCCCCCEEEeCCc-c-------------------cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            4 33234556777777777766432 1                   1123346677777887777655 44456667778


Q ss_pred             ccCCCEEEccCCeeecccchhhcCCccCcee
Q 039967          375 LFSLNKLILNLNQLSGGMPLELGSLIELQYL  405 (445)
Q Consensus       375 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  405 (445)
                      |++|+.+.+..+ +. ....+|.++++|+.+
T Consensus       365 C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          365 CINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            888888887654 22 334567777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.5e-17  Score=145.23  Aligned_cols=172  Identities=25%  Similarity=0.374  Sum_probs=93.6

Q ss_pred             cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967           27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF  106 (445)
Q Consensus        27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~  106 (445)
                      ...+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+..+  +.++++|+.+++++|              .+.
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n--------------~l~  103 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN--------------KVK  103 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS--------------CCC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC--------------cCC
Confidence            34567788888888877644 2 46677788888888777763222  444444333333332              222


Q ss_pred             CCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccccc
Q 039967          107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG  186 (445)
Q Consensus       107 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  186 (445)
                      . ++ .+..+++|++|++++|.++..  ..+..+++|++|++++|.+...  ..+..+++|+.|++++|.+....+  +.
T Consensus       104 ~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~  175 (291)
T 1h6t_A          104 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA  175 (291)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             C-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence            1 12 255666666666666666532  3455556666666666655422  345555666666666655543322  55


Q ss_pred             CCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCcccc
Q 039967          187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS  226 (445)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  226 (445)
                      .+++|+.|++++|.+... + .+..+++|+.|++++|.+.
T Consensus       176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            555555555555555422 1 2444555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=136.71  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=97.2

Q ss_pred             cEEecccCccCCCccccccccCCccEEEcCCCcccCCCC-ccccccCccceeeccCccccccccCCCcceEEcccCcccc
Q 039967          264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE  342 (445)
Q Consensus       264 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~  342 (445)
                      +.++++++.+... +..+  ...++.|++++|.+.+..+ ..|..+++|+.|++++|.+.                   .
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------~   71 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------D   71 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-------------------E
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-------------------E
Confidence            3555555555432 2222  2345666666666654422 34555566666655555443                   3


Q ss_pred             CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967          343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       343 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      ..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|+++...+..|..
T Consensus        72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence            33445666777777777777777666666777777777777777777665666777777777777777777666677777


Q ss_pred             CCCccEEeCCCCccccc
Q 039967          423 LLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       423 ~~~L~~l~l~~~~~~~~  439 (445)
                      +++|++|++++|+|...
T Consensus       152 l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          152 LHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CTTCCEEECCSCCEECS
T ss_pred             CCCCCEEEecCcCCcCC
Confidence            77777777777777643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=8.2e-17  Score=155.45  Aligned_cols=185  Identities=25%  Similarity=0.342  Sum_probs=120.9

Q ss_pred             CcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcC
Q 039967          214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC  293 (445)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  293 (445)
                      +++.|+++++.+.. .+..+  .++|+.|++++|.+..+ +   ..+++|++|++++|.+.. .+. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            88999999988874 44433  37899999999988764 3   456889999999988875 343 443  89999999


Q ss_pred             CCcccCCCCccccccCccceeeccCcccccccc-CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhh
Q 039967          294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL  372 (445)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  372 (445)
                      +|.+.+ +|.   .+++|+.|++++|.+...+. +++|+.|++++|+++. .+. +.  ++|+.|++++|.++ .+|. +
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~  198 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V  198 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H
Confidence            998885 444   56788888888887764332 4466666666666654 333 33  66666666666665 3333 3


Q ss_pred             ccccCC-------CEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967          373 GKLFSL-------NKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       373 ~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      ..  +|       +.|++++|.+. .+|..+..+++|+.|++++|++++..|..+..
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            32  44       66666666665 45555555666666666666666555554433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.3e-16  Score=135.46  Aligned_cols=152  Identities=23%  Similarity=0.323  Sum_probs=91.0

Q ss_pred             cEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccC
Q 039967          264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISES  343 (445)
Q Consensus       264 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  343 (445)
                      +.++.+++.+.. .+..+  .++|++|++++|.+.+..+..|..+++|+.|++++|.+.                   ..
T Consensus        22 ~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~i   79 (229)
T 3e6j_A           22 TTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------AL   79 (229)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CC
T ss_pred             CEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-------------------Cc
Confidence            455555555542 22222  266777777777766555666666666666666666543                   22


Q ss_pred             CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCC
Q 039967          344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL  423 (445)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  423 (445)
                      .+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++. .+|..+..+++|+.|++++|++....+..|..+
T Consensus        80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  158 (229)
T 3e6j_A           80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL  158 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence            2334455666666666666666555555566666666666666666 555556666666666666666665555556666


Q ss_pred             CCccEEeCCCCcccc
Q 039967          424 LRLCYLDLSNNQFGH  438 (445)
Q Consensus       424 ~~L~~l~l~~~~~~~  438 (445)
                      ++|++|++.+|+|..
T Consensus       159 ~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          159 SSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTCCEEECTTSCBCT
T ss_pred             CCCCEEEeeCCCccC
Confidence            666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.6e-17  Score=151.11  Aligned_cols=288  Identities=12%  Similarity=0.031  Sum_probs=161.6

Q ss_pred             CCCCcEEEccCCcccCCCCccccC-CCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC-------
Q 039967          116 LNSLSTMDLSQNQFSGSIPLSLGN-LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN-------  187 (445)
Q Consensus       116 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-------  187 (445)
                      +.+++.|.++++--. ..-..+.. +++|+.|++++|.+.. .....+.++.++.+....+.   +.+.+|..       
T Consensus        24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred             hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccc---cCHHHhccccccccc
Confidence            346777777653211 11112222 5677777777776651 11111122223344444432   22234444       


Q ss_pred             -CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEE
Q 039967          188 -LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL  266 (445)
Q Consensus       188 -l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  266 (445)
                       +++|+.+.+.. .+..+....|..+++|+.+++..+.+......+|..+.++..+.........               
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~---------------  162 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR---------------  162 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH---------------
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh---------------
Confidence             66666666666 5554555556666666666666665554555555555444444333211100               


Q ss_pred             ecccCccCCCccccccccCCcc-EEEcCCCcc-cCCCCccccccCccceeeccCcccccc-----ccCCCcceEEcccCc
Q 039967          267 ELCTNHLSGVIPHSIGNLTGLL-LLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNLSGK-----VNVPKLGTFIISVNN  339 (445)
Q Consensus       267 ~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~  339 (445)
                           .........+..+..|+ .+.+..... ............++..+.+.+.-....     ..+++|+.+++.+++
T Consensus       163 -----~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          163 -----FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             -----TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred             -----ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence                 00001111222223333 222221110 000000000122233333332211100     015677777777777


Q ss_pred             cccCCCccccCCCCCcEEECCCCccccccchhhccccCCC-EEEccCCeeecccchhhcCCccCceeecCCCccccccCc
Q 039967          340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN-KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK  418 (445)
Q Consensus       340 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  418 (445)
                      +......+|..|++|+.+++.++ ++...+.+|.+|++|+ .+.+.+ .+....+.+|.++++|+.++++++++..+.+.
T Consensus       238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred             cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence            77667778999999999999988 6667888999999999 999999 67656678999999999999999999988889


Q ss_pred             cccCCCCccEEeC
Q 039967          419 SIGNLLRLCYLDL  431 (445)
Q Consensus       419 ~~~~~~~L~~l~l  431 (445)
                      +|.+|++|+.|+.
T Consensus       316 aF~~~~~L~~ly~  328 (329)
T 3sb4_A          316 LFGNGVPSKLIYK  328 (329)
T ss_dssp             TTCTTCCCCEEEC
T ss_pred             hhcCCcchhhhcc
Confidence            9999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=3e-16  Score=153.18  Aligned_cols=177  Identities=27%  Similarity=0.396  Sum_probs=135.2

Q ss_pred             ccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccc
Q 039967          233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE  312 (445)
Q Consensus       233 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  312 (445)
                      +..+++|+.|++++|.+....  .+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            445678888999988887642  47788999999999998875543  7888999999999998874 33 578888999


Q ss_pred             eeeccCcccccc---ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967          313 RVLLNQNNLSGK---VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS  389 (445)
Q Consensus       313 ~L~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  389 (445)
                      .|++++|.+.+.   ..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|++|.+.
T Consensus       113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            999999887643   3477888888888887754  567778888888888888876555  777888888888888877


Q ss_pred             cccchhhcCCccCceeecCCCccccccCcccc
Q 039967          390 GGMPLELGSLIELQYLDLSTNKLKSSIPKSIG  421 (445)
Q Consensus       390 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  421 (445)
                      +.  ..+..+++|+.|+|++|++.......+.
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             CC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence            43  3577788888888888887754443333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=9.6e-17  Score=147.91  Aligned_cols=91  Identities=33%  Similarity=0.250  Sum_probs=43.1

Q ss_pred             cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhh---cCCccCceeecCCCccccccCccccCC
Q 039967          347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL---GSLIELQYLDLSTNKLKSSIPKSIGNL  423 (445)
Q Consensus       347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~  423 (445)
                      .+..+++|++|++++|.+....+..|..+++|+.|++++|++....+..+   ..+++|+.|+|++|++....+..+..+
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  186 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL  186 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence            34444555555555555554444445555555555555555542222222   334555555555555554333444444


Q ss_pred             CC--ccEEeCCCCccc
Q 039967          424 LR--LCYLDLSNNQFG  437 (445)
Q Consensus       424 ~~--L~~l~l~~~~~~  437 (445)
                      +.  ++.|++.+|+|.
T Consensus       187 ~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          187 PAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHTTEECCSSCEE
T ss_pred             cHhhcceEEecCCCcc
Confidence            43  245555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2.4e-16  Score=153.89  Aligned_cols=187  Identities=25%  Similarity=0.310  Sum_probs=152.1

Q ss_pred             CcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEeccc
Q 039967          191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT  270 (445)
Q Consensus       191 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  270 (445)
                      +..+.+..+.+....  ....++.|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            333444555444322  245678999999999988743  257889999999999999887544  78899999999999


Q ss_pred             CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc---ccCCCcceEEcccCccccCCCcc
Q 039967          271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK---VNVPKLGTFIISVNNISESIPPE  347 (445)
Q Consensus       271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~  347 (445)
                      |.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.   ..+++|+.|++++|.+.+..+  
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--  170 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--  170 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--
Confidence            998743  3688899999999999998853  4588999999999999988754   348899999999999986544  


Q ss_pred             ccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecc
Q 039967          348 IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG  391 (445)
Q Consensus       348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  391 (445)
                      +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|++.+.
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            88999999999999999854  3688999999999999999744

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=6.2e-16  Score=131.83  Aligned_cols=152  Identities=20%  Similarity=0.196  Sum_probs=87.0

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN   89 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~   89 (445)
                      +.++.+++.+..++.. +.  ++++.|++++|.+....+..|..+++|+.|++++|.+....|..               
T Consensus        14 ~~v~c~~~~l~~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~---------------   75 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA---------------   75 (220)
T ss_dssp             TEEECTTSCCSSCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT---------------
T ss_pred             CEEEcCCCCcCcCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH---------------
Confidence            4566666666655332 22  46777777777776666666667777777777777665433444               


Q ss_pred             ccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCE
Q 039967           90 YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ  169 (445)
Q Consensus        90 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  169 (445)
                                             |.++++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+.
T Consensus        76 -----------------------~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  132 (220)
T 2v9t_B           76 -----------------------FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL  132 (220)
T ss_dssp             -----------------------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             -----------------------hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence                                   445555555555555555433344455555555555555555444455555555555


Q ss_pred             EeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967          170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS  202 (445)
Q Consensus       170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (445)
                      |++++|.+....+..+..+++|+.|++.+|.+.
T Consensus       133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            555555555444444555555666666555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.9e-15  Score=141.04  Aligned_cols=144  Identities=13%  Similarity=0.070  Sum_probs=83.7

Q ss_pred             cccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc--cccCCCcceEEcccCccccCCCccccCCCCCcEE
Q 039967          280 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG--KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVL  357 (445)
Q Consensus       280 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  357 (445)
                      .+..+..++.+.+..+... .....|..+..++.+......+..  ...+.+|+.+.+..+ +......++..|.+|+.+
T Consensus       248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            3444444555554443222 233344445555544443332221  112344444444322 222344567788888888


Q ss_pred             ECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEE
Q 039967          358 DLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYL  429 (445)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  429 (445)
                      ++.++ ++.....+|.+|++|+.+.+..+ +......+|.++++|+.+++..+- . ....+|.+|++|+.+
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            88754 45456677888888888888766 544556778888888888886552 2 234578888888865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.4e-15  Score=129.62  Aligned_cols=152  Identities=22%  Similarity=0.227  Sum_probs=85.6

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCC-ccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIP-LEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH   88 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   88 (445)
                      ++++++++.+..++. .+  ...++.|++++|.+....+ ..+..+++|+.|++++|.+.+..+.               
T Consensus        14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------------   75 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---------------   75 (220)
T ss_dssp             TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---------------
T ss_pred             CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---------------
Confidence            567777776665533 22  2345677777777665433 3466677777777777666543333               


Q ss_pred             cccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcC
Q 039967           89 NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL  168 (445)
Q Consensus        89 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  168 (445)
                                             .|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+
T Consensus        76 -----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A           76 -----------------------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             -----------------------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred             -----------------------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence                                   344555555555555555544444455555555555555555544445555555555


Q ss_pred             EEeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967          169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS  202 (445)
Q Consensus       169 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (445)
                      .|++++|.+....|..+..+++|+.|++++|.+.
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5555555555444555555555555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=2.7e-16  Score=143.11  Aligned_cols=231  Identities=13%  Similarity=0.071  Sum_probs=154.2

Q ss_pred             CCCCcEEeccCCcCC--------------------CCCCcccCC--------CCCCcEEeccCcccCCCCCccccCCCCC
Q 039967            6 FPHLVHLNLSFNILF--------------------GIIPPQIGN--------LSNLQYLDLGSNQLSGVIPLEIGHLNQL   57 (445)
Q Consensus         6 ~~~L~~L~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~l~~~~~L   57 (445)
                      +++|++|+|++|.+.                    .++..+|.+        +++|+.++++. .+....+.+|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678999999998877                    445667778        89999999988 7777788889999999


Q ss_pred             cEEEecCcccccCCCcccccCCCccEEEecCcccc--------------cccc-eEEecCCcCCCCcccc----ccCCCC
Q 039967           58 RILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFV--------------CNLA-NFYLNNNSLFNSIPLV----LGNLNS  118 (445)
Q Consensus        58 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~--------------~~L~-~l~l~~~~~~~~~~~~----~~~~~~  118 (445)
                      +.++++++.+....+..|..+..+..+........              ..++ .+.+....   .++..    -....+
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRD  203 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGG
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccc
Confidence            99999998877666777777776666654432110              1111 11111100   01110    011233


Q ss_pred             CcEEEccCCcccCCCCccc-cCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc-EEEc
Q 039967          119 LSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT-LMSL  196 (445)
Q Consensus       119 L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l  196 (445)
                      +..+.+.+.-.. .....+ ..+++|+.+++.+|.+......+|.+|.+|+.+++.++ +..+.+.+|..+++|+ .+.+
T Consensus       204 ~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          204 INFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL  281 (329)
T ss_dssp             CSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred             cceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence            444444433111 111111 23678888888887777666667888888888888876 5556667788888888 8888


Q ss_pred             cCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEE
Q 039967          197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY  243 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  243 (445)
                      .+ .+..+.+..|.++++|+.+++..+.+......+|.++++|+.++
T Consensus       282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77 56556667788888888888888877767777888888888775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=4e-15  Score=127.65  Aligned_cols=151  Identities=29%  Similarity=0.341  Sum_probs=90.8

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN   89 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~   89 (445)
                      +.++.+++.+..++.. +  .++|++|++++|.+.+..+..+..+++|++|++++|.+..                    
T Consensus        22 ~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--------------------   78 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--------------------   78 (229)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred             CEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--------------------
Confidence            3455555554444321 1  1455555555555555545555555555555555555432                    


Q ss_pred             ccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCE
Q 039967           90 YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ  169 (445)
Q Consensus        90 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  169 (445)
                                        ..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+. .+|..+..+++|+.
T Consensus        79 ------------------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  139 (229)
T 3e6j_A           79 ------------------LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH  139 (229)
T ss_dssp             ------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred             ------------------cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence                              22334566666777777777766555555666777777777777766 55666667777777


Q ss_pred             EeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967          170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS  202 (445)
Q Consensus       170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (445)
                      |++++|.+....+..+..+++|+.|++.+|.+.
T Consensus       140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            777777766544455666777777777777665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=9.9e-16  Score=141.11  Aligned_cols=176  Identities=26%  Similarity=0.252  Sum_probs=105.7

Q ss_pred             ceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCcccc-CCCCCceEEeccCccccccCccccCCCCcCEEeCCC
Q 039967           96 ANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLG-NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE  174 (445)
Q Consensus        96 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  174 (445)
                      +.++++++.+.. +|..+.  +.++.|++++|.++...+..+. .+++|++|++++|.+....+..|.++++|+.|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            455555555443 343332  3467777777777655555555 677777777777776655555666777777777777


Q ss_pred             ccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccc---cCCCcccEEEeeCccccc
Q 039967          175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI---GNLSSLRALYLYNNGLYS  251 (445)
Q Consensus       175 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  251 (445)
                      |.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+   ..+++|+.|++++|.+..
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            77665545556666777777777776665555666666667777776666654333333   345666666666666665


Q ss_pred             cChhhhccccc--ccEEecccCccC
Q 039967          252 FVPEEIRYLTS--LSELELCTNHLS  274 (445)
Q Consensus       252 ~~~~~~~~~~~--L~~L~l~~~~~~  274 (445)
                      .....+..++.  ++.|++.+|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            54445555544  255666655543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=2.2e-15  Score=126.20  Aligned_cols=131  Identities=18%  Similarity=0.307  Sum_probs=70.7

Q ss_pred             ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT  192 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  192 (445)
                      +..+++|++|++++|.++.  +..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+
T Consensus        62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            4555555566665554431  22455566666666666655544455556666666666666665544455555666666


Q ss_pred             EEEccCCc-cCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccc
Q 039967          193 LMSLFNNS-LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL  249 (445)
Q Consensus       193 ~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  249 (445)
                      +|++++|. +.. .+ .+..+++|+.|++++|.+....  .+..+++|+.|++++|.+
T Consensus       140 ~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          140 SIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            66666665 432 22 3555556666666655554321  444555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.65  E-value=7e-15  Score=141.99  Aligned_cols=123  Identities=27%  Similarity=0.310  Sum_probs=56.3

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      +|++|++++|.++. +|.   .+++|+.|++++|.+.. +|.   .+++|+.|++++|.+.. +|. +.  ++|+.|+++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            44455555444442 222   34445555555554442 222   23445555555555442 333 32  455555555


Q ss_pred             CCccCCCCCccccCCCCc-------CEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhh
Q 039967          198 NNSLSGSLPPILGNLKSL-------SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI  257 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  257 (445)
                      +|.++ .+|. +..  +|       +.|++++|.+. ..+..+..+++|+.|++++|.+....+..+
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            55544 2232 221  33       55566655555 233334445566666666665554444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.1e-14  Score=135.11  Aligned_cols=269  Identities=12%  Similarity=0.115  Sum_probs=151.0

Q ss_pred             CCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEc
Q 039967          141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL  220 (445)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  220 (445)
                      ..++.+.+.+. +......+|.++ +|+.+.+..+ +..+...+|.. .+|+.+.+.. .+.......|..+++|+.+++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            44444444432 222334444443 4555555443 33333344444 2455555543 333333444555555555555


Q ss_pred             cCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCC
Q 039967          221 HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP  300 (445)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  300 (445)
                      ..+.+......+|. +.+|+.+.+..+ +.......|..+++|+.+++..+ +......+|.. .+|+.+.+.++ +...
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEE
Confidence            55555444444444 355666665532 44444555666666666666543 33334444544 56666666432 3334


Q ss_pred             CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCE
Q 039967          301 IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNK  380 (445)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  380 (445)
                      ...+|.+|++|+.+.+.++...              .+........++..|++|+.+++.+ .++.....+|.+|++|+.
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~--------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFN--------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ  327 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCC--------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred             ChhHhhCCCCCCEEEeCCcccc--------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence            4566777777777777665432              0111123345677788888888874 355566677788888888


Q ss_pred             EEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCC-CccEEeCCCCcc
Q 039967          381 LILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLL-RLCYLDLSNNQF  436 (445)
Q Consensus       381 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~  436 (445)
                      +.+..+ +......+|.++ +|+.++++++.........|..++ .++.|++-.+..
T Consensus       328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            888655 443555677777 888888888877766667777774 677777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.2e-14  Score=134.89  Aligned_cols=264  Identities=10%  Similarity=0.090  Sum_probs=168.8

Q ss_pred             CCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967           30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI  109 (445)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~  109 (445)
                      +..++.+.+.+. +......+|.++ +|+.+.+..+ +...-..+|.+ ..|+.+.              +.. .+...-
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~--------------lp~-~l~~I~  172 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIV--------------FPS-TLEQLK  172 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEE--------------CCT-TCCEEC
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEE--------------eCC-CccEeh
Confidence            455666666543 333555566654 5777776654 33222333333 1233333              322 223333


Q ss_pred             cccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCC
Q 039967          110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLS  189 (445)
Q Consensus       110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  189 (445)
                      ...|.+|++|+.+++..+.++......|. ..+|+.+.+..+ +......+|.++++|+.+++.++ +..+...+|.. .
T Consensus       173 ~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~  248 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S  248 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C
T ss_pred             HHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C
Confidence            45678888888888888877766566666 578888888754 55466677888888888888764 44455566666 6


Q ss_pred             CCcEEEccCCccCCCCCccccCCCCcCEEEccCcccc-----CCCCccccCCCcccEEEeeCccccccChhhhccccccc
Q 039967          190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS-----GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS  264 (445)
Q Consensus       190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  264 (445)
                      +|+.+.+.. .+.......|..+++|+.+.+..+...     .....+|.++++|+.+.+.. .+.......|.++++|+
T Consensus       249 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            788888843 344455667778888888888766543     34456777888888888873 45555667777788888


Q ss_pred             EEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccC-ccceeeccCcc
Q 039967          265 ELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT-SVERVLLNQNN  320 (445)
Q Consensus       265 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~  320 (445)
                      .+.+..+ +......+|..+ +|+.+++.++.........|.+++ .++.+.+..+.
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            8888553 444555667777 788888887766655555666664 56666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=4.6e-16  Score=136.42  Aligned_cols=147  Identities=21%  Similarity=0.316  Sum_probs=85.1

Q ss_pred             ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc--CCCcceEEcc
Q 039967          259 YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN--VPKLGTFIIS  336 (445)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~L~~L~l~  336 (445)
                      .+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+...  .++|+.|+++
T Consensus        39 ~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~  114 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD  114 (263)
T ss_dssp             HHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECC
T ss_pred             hcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEcc
Confidence            334444444444443321 1 23334444444444444442211  3444444444444444332111  1345555555


Q ss_pred             cCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccc
Q 039967          337 VNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSS  415 (445)
Q Consensus       337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  415 (445)
                      +|++.+.  ..+..+++|++|++++|.+++. + .+..+++|+.|++++|++.+.  ..+..+++|+.|++++|++...
T Consensus       115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            5555432  3577788888888888888754 3 677888888888888888754  5677888888888888888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.9e-15  Score=123.18  Aligned_cols=138  Identities=24%  Similarity=0.188  Sum_probs=104.4

Q ss_pred             cCCccEEEcCCCccc-CCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967          284 LTGLLLLNMCENHLS-GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN  362 (445)
Q Consensus       284 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  362 (445)
                      +++++.|++++|.+. +.++..+..+++|+.|++++|.+.                   ..  ..+..+++|++|++++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-------------------~~--~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-------------------SV--SNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-------------------CC--SSCCCCSSCCEEEEESC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-------------------Ch--hhhccCCCCCEEECcCC
Confidence            367778888887776 455666667777777777666543                   22  55677888999999999


Q ss_pred             ccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC---ccccCCCCccEEeCCCCcccc
Q 039967          363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP---KSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      .+.+..|..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|+++...+   ..+..+++|++|++.+|... 
T Consensus        82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-  160 (168)
T 2ell_A           82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-  160 (168)
T ss_dssp             CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-
T ss_pred             cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-
Confidence            888667777777899999999999887432 2678888999999999999885554   47888999999999999876 


Q ss_pred             cCCCC
Q 039967          439 KILVE  443 (445)
Q Consensus       439 ~~~~~  443 (445)
                      ++|++
T Consensus       161 ~~~~~  165 (168)
T 2ell_A          161 EAPDS  165 (168)
T ss_dssp             BCCSS
T ss_pred             hcccc
Confidence            56654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=1.6e-15  Score=132.93  Aligned_cols=167  Identities=20%  Similarity=0.301  Sum_probs=77.5

Q ss_pred             CCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967           30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI  109 (445)
Q Consensus        30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~  109 (445)
                      +.++..++++.+.+.+..  .+..+++|+.|+++++.+.. ++ .+..+++|+.++              +++|.+.+. 
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~--------------L~~N~i~~~-   78 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELH--------------LSHNQISDL-   78 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEE--------------CCSSCCCCC-
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEE--------------CCCCccCCC-
Confidence            334555556666555322  35556666666666665542 12 233333222222              222222221 


Q ss_pred             cccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCC
Q 039967          110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLS  189 (445)
Q Consensus       110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  189 (445)
                      +. +..+++|++|++++|.++.. +. +.. ++|++|++++|.+.. . ..+..+++|+.|++++|.+.+. + .+..++
T Consensus        79 ~~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~  150 (263)
T 1xeu_A           79 SP-LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLS  150 (263)
T ss_dssp             GG-GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCT
T ss_pred             hh-hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCC
Confidence            22 55555556666665555532 21 122 555555555555542 1 2345555555555555555432 2 344555


Q ss_pred             CCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967          190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL  225 (445)
Q Consensus       190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  225 (445)
                      +|+.|++++|.+...  ..+..+++|+.+++++|.+
T Consensus       151 ~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             CCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            555555555555432  3344444444554444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=4.3e-17  Score=158.25  Aligned_cols=190  Identities=19%  Similarity=0.172  Sum_probs=121.3

Q ss_pred             cCCCcccEEEeeCccccccChhhhcccccccEEecccCcc-------------CCCccccccccCCccEEE-cCCCcccC
Q 039967          234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL-------------SGVIPHSIGNLTGLLLLN-MCENHLSG  299 (445)
Q Consensus       234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------~~~~~~~l~~~~~L~~L~-l~~~~~~~  299 (445)
                      ..+++|+.|++++|.+.. +|..+..+++|+.|+++++..             ....+..+..+++|+.|+ ++.+.   
T Consensus       346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~---  421 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY---  421 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred             ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence            345666666666666654 455666666666666654421             111222233333333333 22211   


Q ss_pred             CCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCC
Q 039967          300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN  379 (445)
Q Consensus       300 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  379 (445)
                              +..|+.+.+.+|.+.... ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+
T Consensus       422 --------~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  489 (567)
T 1dce_A          422 --------LDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE  489 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             --------cchhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence                    112222223333332221 2357788888887775 444 778888888888888887 6677888888888


Q ss_pred             EEEccCCeeecccchhhcCCccCceeecCCCcccccc-CccccCCCCccEEeCCCCcccccCC
Q 039967          380 KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI-PKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      .|++++|.+.+ +| .++.+++|+.|++++|++++.. |..+..+++|++|++++|++++..|
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            88888888874 56 7888888888888888888665 7888888888888888888886654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=8.6e-15  Score=121.91  Aligned_cols=132  Identities=24%  Similarity=0.324  Sum_probs=95.6

Q ss_pred             cEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCc-cccCCCCCcEEECCCCcccc
Q 039967          288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP-EIGDSPKLQVLDLSSNNIVG  366 (445)
Q Consensus       288 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  366 (445)
                      ++++++++++. .+|..+.  ..++.|++++|.+                   ....+. .+..+++|++|++++|.+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i-------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~   68 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNEL-------------------GRISSDGLFGRLPHLVKLELKRNQLTG   68 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCC-------------------CSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcC-------------------CccCCccccccCCCCCEEECCCCCCCC
Confidence            56777777765 4444332  2556666655554                   333332 36777888888888888887


Q ss_pred             ccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967          367 EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       367 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      ..|..|..+++|+.|++++|++.+..+..+.++++|+.|++++|++++..+..|..+++|++|++++|+|.+..+
T Consensus        69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            777788888888888888888876666677788888888888888887777788888888888888888875543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=7e-17  Score=156.75  Aligned_cols=203  Identities=20%  Similarity=0.195  Sum_probs=145.3

Q ss_pred             CCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcc-------------cccCCCcccccCCCccEEE-ecCccccc
Q 039967           28 GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQ-------------LHGSIPLEIGQLSLINVLA-LCHNYFVC   93 (445)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~l~-l~~~~~~~   93 (445)
                      ..+++|+.|++++|.+. .+|..++.+++|+.|+++++.             ..+..|..+..++.|+.++ +..+.+ .
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence            56788899999999887 678888888999999887664             3445566777888888887 444332 3


Q ss_pred             ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967           94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS  173 (445)
Q Consensus        94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  173 (445)
                      +|+.+.+..+.+....+      ..|+.|++++|.++. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus       424 ~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS  494 (567)
T ss_dssp             HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECC
Confidence            45555555554432111      247788888888874 554 778888888888888877 667778888888888888


Q ss_pred             CccccccccccccCCCCCcEEEccCCccCCCC-CccccCCCCcCEEEccCccccCCCCc---cccCCCcccEEE
Q 039967          174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL-PPILGNLKSLSALGLHINQLSGVIPS---SIGNLSSLRALY  243 (445)
Q Consensus       174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~  243 (445)
                      +|.+.. +| .+..+++|+.|++++|.++... |..+..+++|+.|++++|.+....+.   .+..+++|+.|+
T Consensus       495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            888774 55 6778888888888888887654 77788888888888888877644321   223467777775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=8.3e-15  Score=116.76  Aligned_cols=129  Identities=22%  Similarity=0.195  Sum_probs=96.6

Q ss_pred             cCCccEEEcCCCccc-CCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967          284 LTGLLLLNMCENHLS-GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN  362 (445)
Q Consensus       284 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  362 (445)
                      .++++.|++++|.+. +.++..+..+++|+.|++++|.+.                   ..  ..+..+++|++|++++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~--~~~~~l~~L~~L~Ls~n   74 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-------------------SI--ANLPKLNKLKKLELSDN   74 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-------------------CC--TTCCCCTTCCEEECCSS
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-------------------Cc--hhhhcCCCCCEEECCCC
Confidence            356777777777776 455666666777777777666553                   22  45667788899999988


Q ss_pred             ccccccchhhccccCCCEEEccCCeeecc-cchhhcCCccCceeecCCCccccccC---ccccCCCCccEEeCCC
Q 039967          363 NIVGEIPVQLGKLFSLNKLILNLNQLSGG-MPLELGSLIELQYLDLSTNKLKSSIP---KSIGNLLRLCYLDLSN  433 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~  433 (445)
                      .+.+..|..+..+++|++|++++|++.+. .+..+..+++|+.|++++|++++..+   ..+..+++|++|++++
T Consensus        75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88866777777788999999999988743 23678888899999999998886555   4678888999888764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=3.5e-14  Score=118.13  Aligned_cols=92  Identities=25%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCC
Q 039967          346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR  425 (445)
Q Consensus       346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  425 (445)
                      ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|+++...+..|..+++
T Consensus        48 ~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  127 (193)
T 2wfh_A           48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA  127 (193)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence            33444445555555555554444444455555555555555554444444555555555555555555433344555555


Q ss_pred             ccEEeCCCCccc
Q 039967          426 LCYLDLSNNQFG  437 (445)
Q Consensus       426 L~~l~l~~~~~~  437 (445)
                      |++|++.+|+|.
T Consensus       128 L~~L~L~~N~~~  139 (193)
T 2wfh_A          128 LSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCEE
T ss_pred             ccEEEeCCCCee
Confidence            555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=3.1e-14  Score=116.99  Aligned_cols=113  Identities=24%  Similarity=0.166  Sum_probs=89.6

Q ss_pred             CcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecC
Q 039967          329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS  408 (445)
Q Consensus       329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  408 (445)
                      +++.|++.++++.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44555555555555555567888999999999999886666777889999999999999886666667888999999999


Q ss_pred             CCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967          409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       409 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      +|++....+..+..+++|++|++++|++.+..|
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999986666667889999999999999887654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.54  E-value=1.6e-12  Score=121.27  Aligned_cols=337  Identities=10%  Similarity=0.067  Sum_probs=160.7

Q ss_pred             CCCCCcccCCCC-CCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceE
Q 039967           20 FGIIPPQIGNLS-NLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANF   98 (445)
Q Consensus        20 ~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l   98 (445)
                      +.+....|.++. .|+.+.+... ++.....+|.+|.+|+.+.+..+.     |..+.                      
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~-----p~~l~----------------------  103 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK-----PSCVK----------------------  103 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC-----CCCCC----------------------
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCC-----CCeee----------------------
Confidence            344556677664 5788887654 555667778888888888776542     11100                      


Q ss_pred             EecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccc
Q 039967           99 YLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI  178 (445)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  178 (445)
                              ..-...|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+.... .......|.++..|+.+.+.++ +.
T Consensus       104 --------~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~  172 (394)
T 4gt6_A          104 --------KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT  172 (394)
T ss_dssp             --------EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             --------EechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceecccccccccccce-ee
Confidence                    001122444444444444322 222333445555555555554332 2233445555555555555443 22


Q ss_pred             ccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhc
Q 039967          179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIR  258 (445)
Q Consensus       179 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  258 (445)
                      .+...+|. ...|+.+.+...-.. .....+..+..+.................+...........           ...
T Consensus       173 ~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  239 (394)
T 4gt6_A          173 AIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI-----------RYP  239 (394)
T ss_dssp             EECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE-----------ECC
T ss_pred             Eecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccc-----------ccc
Confidence            22333332 234555555443222 33334445555555544333222111001110000000000           001


Q ss_pred             ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccC
Q 039967          259 YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVN  338 (445)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~  338 (445)
                      ....+..+.+.. .+......+|..+..|+.+.+.+.... ....+|.+|+.|+.+.+...                   
T Consensus       240 ~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-------------------  298 (394)
T 4gt6_A          240 SQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-------------------  298 (394)
T ss_dssp             TTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-------------------
T ss_pred             cccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-------------------
Confidence            112223333322 122233345556666666666554332 34456667777777665331                   


Q ss_pred             ccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCc
Q 039967          339 NISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK  418 (445)
Q Consensus       339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  418 (445)
                       +......++..|.+|+.+++.++ ++.....+|.+|.+|+++.+..+ +......+|.++.+|+.+++.++....   .
T Consensus       299 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~  372 (394)
T 4gt6_A          299 -ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---N  372 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---H
T ss_pred             -ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---h
Confidence             11123345667777777777654 34355567777788888877654 443445677777888888887765432   3


Q ss_pred             cccCCCCccEEeCCCCc
Q 039967          419 SIGNLLRLCYLDLSNNQ  435 (445)
Q Consensus       419 ~~~~~~~L~~l~l~~~~  435 (445)
                      ++..+..|+.+.+..+.
T Consensus       373 ~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          373 AISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCBCCCCC---------
T ss_pred             hhhccCCCCEEEeCCCC
Confidence            56667777777766553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.54  E-value=1.2e-12  Score=122.03  Aligned_cols=285  Identities=10%  Similarity=0.042  Sum_probs=169.7

Q ss_pred             ccccCCCCCcEEEccCC---cccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC
Q 039967          111 LVLGNLNSLSTMDLSQN---QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN  187 (445)
Q Consensus       111 ~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  187 (445)
                      ..|.+|.+|+.+.+..+   .++.....+|..+.+|+.+.+..+ +......+|..+.+|+.+.+.... ..+....+..
T Consensus        81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~  158 (394)
T 4gt6_A           81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSY  158 (394)
T ss_dssp             TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTT
T ss_pred             HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceec
Confidence            35666677777766543   244444556777777777666544 333445566777777777776532 2344455666


Q ss_pred             CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEe
Q 039967          188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE  267 (445)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  267 (445)
                      +..|+.+.+..+ +.......|. ...|+.+.+...... ....+|..+..++................+...       
T Consensus       159 c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~-------  228 (394)
T 4gt6_A          159 CYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKS-------  228 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEEC-------
T ss_pred             ccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccc-------
Confidence            677777766544 2212233333 245666666543222 334455556666655544332221100000000       


Q ss_pred             cccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcc
Q 039967          268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPE  347 (445)
Q Consensus       268 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  347 (445)
                          ...............+..+.+.+. +......+|.+|..|+.+.+.....                    .....+
T Consensus       229 ----~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--------------------~I~~~a  283 (394)
T 4gt6_A          229 ----ANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV--------------------SIGTGA  283 (394)
T ss_dssp             ----TTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC--------------------EECTTT
T ss_pred             ----ccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc--------------------eecCcc
Confidence                000000001112233444554432 2223456788899999888755321                    123456


Q ss_pred             ccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCcc
Q 039967          348 IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC  427 (445)
Q Consensus       348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  427 (445)
                      +..|+.|+.+.+.+ .++.....+|.+|.+|+.+.+.++ +......+|.++.+|+.+.|..+ ++.+...+|.+|.+|+
T Consensus       284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            78899999999974 445466778999999999999875 54455678999999999999754 6667889999999999


Q ss_pred             EEeCCCCc
Q 039967          428 YLDLSNNQ  435 (445)
Q Consensus       428 ~l~l~~~~  435 (445)
                      .+++.++.
T Consensus       361 ~i~~~~~~  368 (394)
T 4gt6_A          361 NIEYSGSR  368 (394)
T ss_dssp             EEEESSCH
T ss_pred             EEEECCce
Confidence            99998874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=7.3e-14  Score=113.73  Aligned_cols=132  Identities=20%  Similarity=0.218  Sum_probs=79.5

Q ss_pred             CCCcEEeccCcccC-CCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967           31 SNLQYLDLGSNQLS-GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI  109 (445)
Q Consensus        31 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~  109 (445)
                      ++|+.|++++|.+. +..|..+..+++|++|++++|.+...  ..+..+++|+              +|++++|.+....
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~--------------~L~Ls~N~l~~~~   87 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLK--------------KLELSENRIFGGL   87 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCC--------------EEEEESCCCCSCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCC--------------EEECcCCcCchHH
Confidence            45666666666554 33444455556666666666655532  3444444333              3333333334445


Q ss_pred             cccccCCCCCcEEEccCCcccCCC-CccccCCCCCceEEeccCccccccC---ccccCCCCcCEEeCCCcccc
Q 039967          110 PLVLGNLNSLSTMDLSQNQFSGSI-PLSLGNLSNLDKLYLYSNSFSGSIP---SIIGNLKSLLQLDLSENQLI  178 (445)
Q Consensus       110 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~  178 (445)
                      |..+..+++|++|++++|.++... +..+..+++|++|++++|.+....+   ..+..+++|++|++++|.+.
T Consensus        88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            555666777888888887776432 2567777888888888887773332   26777888888888887765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=6.4e-15  Score=147.52  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=69.3

Q ss_pred             cccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc----ccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967          280 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK----VNVPKLGTFIISVNNISESIPPEIGDSPKLQ  355 (445)
Q Consensus       280 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  355 (445)
                      .+..++.|+.|++++|.+. .++..+..+++|+.|+|++|.+...    ..+++|+.|++++|.++ .+|..+..+++|+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            3444455555555555544 3333333444555555544444311    11233333333333333 4455666667777


Q ss_pred             EEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCc-cCceeecCCCccccccCc
Q 039967          356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI-ELQYLDLSTNKLKSSIPK  418 (445)
Q Consensus       356 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~  418 (445)
                      +|++++|.+. .+|..|..+++|+.|+|++|.+.+..|..+.... .+..+++++|.+++..|.
T Consensus       297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            7777777665 4555566677777777777776655555554322 122356666666654443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=4.3e-13  Score=111.56  Aligned_cols=129  Identities=25%  Similarity=0.268  Sum_probs=79.5

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCc-cccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPL-EIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH   88 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   88 (445)
                      ++|+++++.+..++. .+.  .+++.|++++|.+....+. .+..+++|++|++++|.+.+..|                
T Consensus        11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------   71 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP----------------   71 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT----------------
T ss_pred             CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH----------------
Confidence            667777777665533 222  2677777777777655443 36667777777777776654333                


Q ss_pred             cccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcC
Q 039967           89 NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL  168 (445)
Q Consensus        89 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  168 (445)
                                            ..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+
T Consensus        72 ----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           72 ----------------------NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             ----------------------TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             ----------------------hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence                                  4455555666666666666655555566666666666666666655555666666666


Q ss_pred             EEeCCCccccc
Q 039967          169 QLDLSENQLIG  179 (445)
Q Consensus       169 ~L~l~~~~~~~  179 (445)
                      +|++++|++..
T Consensus       130 ~L~L~~N~l~c  140 (192)
T 1w8a_A          130 SLNLASNPFNC  140 (192)
T ss_dssp             EEECTTCCBCC
T ss_pred             EEEeCCCCccC
Confidence            66666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=7.8e-14  Score=111.07  Aligned_cols=88  Identities=23%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccc-ccccccCCCCC
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS-IPLSFGNLSSL  191 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L  191 (445)
                      +..+++|++|++++|.++..  ..+..+++|++|++++|.+....|..+..+++|++|++++|.+... .+..+..+++|
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            34444444444444444322  3344444444444444444322333333344444444444443321 11333444444


Q ss_pred             cEEEccCCccC
Q 039967          192 TLMSLFNNSLS  202 (445)
Q Consensus       192 ~~L~l~~~~~~  202 (445)
                      ++|++++|.++
T Consensus       116 ~~L~l~~N~l~  126 (149)
T 2je0_A          116 KSLDLFNCEVT  126 (149)
T ss_dssp             CEEECTTCGGG
T ss_pred             CEEeCcCCccc
Confidence            44444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=4.2e-14  Score=141.62  Aligned_cols=180  Identities=22%  Similarity=0.265  Sum_probs=107.6

Q ss_pred             CCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCcccccc
Q 039967          229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL  308 (445)
Q Consensus       229 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  308 (445)
                      .+..+..++.|+.|++++|.+... +..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            345667778888888888887754 434447788888888888887 56677788888889999888888 667778888


Q ss_pred             CccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccC-CCEEEccCCe
Q 039967          309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS-LNKLILNLNQ  387 (445)
Q Consensus       309 ~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~  387 (445)
                      ++|+.|++++|.+.                    .+|..+..+++|++|++++|.+.+..|..+..+.. ...+++++|.
T Consensus       293 ~~L~~L~L~~N~l~--------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~  352 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT--------------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR  352 (727)
T ss_dssp             TTCSEEECCSSCCC--------------------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEEECCCCCCC--------------------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence            88888887777654                    55667888999999999999999888877755422 2347788888


Q ss_pred             eecccchhhcCCccCceeecCCC--------ccccccCccccCCCCccEEeCCCCccc
Q 039967          388 LSGGMPLELGSLIELQYLDLSTN--------KLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       388 ~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +.+..|.      .|+.|++++|        .+....+..+..+..+....+..|.+.
T Consensus       353 l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          353 PEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             CCCCCCC------C-----------------------------------------CCC
T ss_pred             ccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            8765553      5666777777        222222233444555555666666664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.6e-13  Score=112.49  Aligned_cols=88  Identities=24%  Similarity=0.189  Sum_probs=46.7

Q ss_pred             cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccch--hhcCCccCceeecCCCccccccCc----cc
Q 039967          347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL--ELGSLIELQYLDLSTNKLKSSIPK----SI  420 (445)
Q Consensus       347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~  420 (445)
                      .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .++.  .+..+++|+.|++++|++.. .+.    .+
T Consensus        59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~  136 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVI  136 (176)
T ss_dssp             CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHH
T ss_pred             ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHH
Confidence            3444555666666666555433333455556666666666554 3333  45555566666666666552 232    25


Q ss_pred             cCCCCccEEeCCCCcc
Q 039967          421 GNLLRLCYLDLSNNQF  436 (445)
Q Consensus       421 ~~~~~L~~l~l~~~~~  436 (445)
                      ..+++|+.|++++|+.
T Consensus       137 ~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          137 YKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHCTTCSEETTEECCH
T ss_pred             HHCCccceeCCCcCCH
Confidence            5556666666655543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=2e-12  Score=107.51  Aligned_cols=125  Identities=31%  Similarity=0.416  Sum_probs=60.5

Q ss_pred             EEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCc
Q 039967          121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNS  200 (445)
Q Consensus       121 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  200 (445)
                      .++++++.++ .+|..+.  +++++|.+.+|.+. .+|..|.++++|+.|++++|.+....+..|..+++|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4445544444 2232221  34555555555544 334445555555555555555544444444555555555555555


Q ss_pred             cCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccc
Q 039967          201 LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL  249 (445)
Q Consensus       201 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  249 (445)
                      +....+..+..+++|+.|++++|.+.......+..+++|+.+++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            5444444445555555555555555433333444455555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.38  E-value=7.3e-12  Score=102.73  Aligned_cols=109  Identities=28%  Similarity=0.355  Sum_probs=46.8

Q ss_pred             CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEcc
Q 039967          142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH  221 (445)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  221 (445)
                      +|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++++++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            34444444444332222233344444444444444433222333444444444444444443333334444455555555


Q ss_pred             CccccCCCCccccCCCcccEEEeeCcccc
Q 039967          222 INQLSGVIPSSIGNLSSLRALYLYNNGLY  250 (445)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  250 (445)
                      +|.+.......+..+++|+++++++|.+.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            54444333333444555555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=8.7e-13  Score=108.13  Aligned_cols=132  Identities=20%  Similarity=0.216  Sum_probs=75.7

Q ss_pred             cCCCCCCcEEeccCcccCCCCCccccCC-CCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcC
Q 039967           27 IGNLSNLQYLDLGSNQLSGVIPLEIGHL-NQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSL  105 (445)
Q Consensus        27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~  105 (445)
                      +..+.+|+.|++++|.+... +. +..+ ++|++|++++|.+.+.  ..+..++.|+.+              ++++|.+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L--------------~Ls~N~l   76 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL--------------LVNNNRI   76 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEE--------------ECCSSCC
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEE--------------ECCCCcc
Confidence            34445555555555555422 22 2222 2555555555555432  333344433322              3333333


Q ss_pred             CCCccccccCCCCCcEEEccCCcccCCCCc--cccCCCCCceEEeccCccccccCcc----ccCCCCcCEEeCCCcccc
Q 039967          106 FNSIPLVLGNLNSLSTMDLSQNQFSGSIPL--SLGNLSNLDKLYLYSNSFSGSIPSI----IGNLKSLLQLDLSENQLI  178 (445)
Q Consensus       106 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~  178 (445)
                      ....+..+..+++|++|++++|.++ ..+.  .+..+++|+.|++.+|.+. ..+..    +..+++|+.|+++++...
T Consensus        77 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           77 CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            3332333467778888888888876 3443  6777888888888888876 44553    777888888888887754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=1.2e-14  Score=121.70  Aligned_cols=153  Identities=23%  Similarity=0.250  Sum_probs=97.3

Q ss_pred             cccccEEecccCccCCCccc------cccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceE
Q 039967          260 LTSLSELELCTNHLSGVIPH------SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF  333 (445)
Q Consensus       260 ~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L  333 (445)
                      ...++.++++.+.+....+.      .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.           
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-----------   83 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-----------   83 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-----------
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-----------
Confidence            34444444444444333222      56667777777777777764 44 5666666666666666543           


Q ss_pred             EcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc-hhhcCCccCceeecCCCcc
Q 039967          334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSLIELQYLDLSTNKL  412 (445)
Q Consensus       334 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  412 (445)
                               ..+..+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|++
T Consensus        84 ---------~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           84 ---------KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ---------SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ---------cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence                     233444455778888888887764 33 56777888888888887763322 3677788888888888887


Q ss_pred             ccccCc----------cccCCCCccEEeCCCCcccc
Q 039967          413 KSSIPK----------SIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       413 ~~~~~~----------~~~~~~~L~~l~l~~~~~~~  438 (445)
                      ....+.          .+..+++|++|+  +++++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            654333          267788888776  666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=6.2e-12  Score=102.19  Aligned_cols=106  Identities=30%  Similarity=0.271  Sum_probs=75.5

Q ss_pred             ceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCC
Q 039967          331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTN  410 (445)
Q Consensus       331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  410 (445)
                      +.++++++.+.. .|..+.  +.|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            344555555543 333332  67788888888887666777778888888888888887555556677888888888888


Q ss_pred             ccccccCccccCCCCccEEeCCCCccccc
Q 039967          411 KLKSSIPKSIGNLLRLCYLDLSNNQFGHK  439 (445)
Q Consensus       411 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  439 (445)
                      ++....+..|..+++|++|++++|+|...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            88766666677888888888888887643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=1.2e-11  Score=100.84  Aligned_cols=103  Identities=29%  Similarity=0.291  Sum_probs=68.5

Q ss_pred             eEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCc
Q 039967          332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK  411 (445)
Q Consensus       332 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  411 (445)
                      .++++++.+. ..|..+.  ++|++|++++|.+.+..+..|.++++|+.|++++|++.+..+..|..+++|+.|++++|+
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            3444444443 3333332  667777777777776666677777777777777777774444456677777777777777


Q ss_pred             cccccCccccCCCCccEEeCCCCccc
Q 039967          412 LKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       412 ~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      +....+..|..+++|++|++++|+|.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            77555555777777777777777776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.30  E-value=4.9e-10  Score=103.87  Aligned_cols=82  Identities=9%  Similarity=-0.044  Sum_probs=60.1

Q ss_pred             CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCC
Q 039967          344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL  423 (445)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  423 (445)
                      ....+..|++|+.+.+.++.++.....+|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++.+...+|.+|
T Consensus       278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            3446778888888888887777666778888888888888754 44344567888888888888654 555677788777


Q ss_pred             CCcc
Q 039967          424 LRLC  427 (445)
Q Consensus       424 ~~L~  427 (445)
                      ..++
T Consensus       356 ~~~~  359 (379)
T 4h09_A          356 SITK  359 (379)
T ss_dssp             SCCC
T ss_pred             CCCc
Confidence            5443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.30  E-value=4.9e-10  Score=103.83  Aligned_cols=316  Identities=9%  Similarity=0.032  Sum_probs=158.8

Q ss_pred             CCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCC
Q 039967           28 GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN  107 (445)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~  107 (445)
                      ....+|+.+.+... ++.+...+|.+|.+|+.+++..+ ++..-..+|..+ .|+.+.+..     +++.          
T Consensus        43 ~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-----~l~~----------  104 (379)
T 4h09_A           43 KDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-----RVKK----------  104 (379)
T ss_dssp             GGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-----TCCE----------
T ss_pred             ccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-----eeeE----------
Confidence            34456777777643 44466677888888888887654 332223344443 333333321     1111          


Q ss_pred             CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC
Q 039967          108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN  187 (445)
Q Consensus       108 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  187 (445)
                      .-...|..+ +|+.+++..+ +.......|... .++.+.+..+ +.......|..+..++.+.+.............. 
T Consensus       105 I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-  179 (379)
T 4h09_A          105 FGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-  179 (379)
T ss_dssp             ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-
T ss_pred             eccceeccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-
Confidence            112234443 5777777653 222334445443 4555555443 2324455666677777766654332111000000 


Q ss_pred             CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEe
Q 039967          188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE  267 (445)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  267 (445)
                      ...        .   ......+.....+..+.+..... ......+..+..++.+.+... +.......+..+..|+.+.
T Consensus       180 ~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~  246 (379)
T 4h09_A          180 YNK--------N---KTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA  246 (379)
T ss_dssp             EET--------T---SSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred             ccc--------c---cceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence            000        0   00011112223333333322211 122334445556666655432 2233344555666666666


Q ss_pred             cccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcc
Q 039967          268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPE  347 (445)
Q Consensus       268 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  347 (445)
                      +..+ +.......+..+.+++.+.+..+ +......+|.+|++|+.+.+.++.+.                   .....+
T Consensus       247 lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-------------------~I~~~a  305 (379)
T 4h09_A          247 IPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-------------------TLEPRV  305 (379)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-------------------EECTTT
T ss_pred             cCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-------------------eehhhh
Confidence            6543 33344455666667777776543 33234456777777777776554332                   123346


Q ss_pred             ccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccC
Q 039967          348 IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL  402 (445)
Q Consensus       348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  402 (445)
                      +..|.+|+.+.+.++ ++.....+|.+|++|+.+.+..+ +......+|.+++.+
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            677777888877644 44455667778888888888654 443445566665433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=4.4e-14  Score=118.36  Aligned_cols=136  Identities=22%  Similarity=0.297  Sum_probs=102.6

Q ss_pred             ccCCccEEEcCCCcccCCCCc------cccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcE
Q 039967          283 NLTGLLLLNMCENHLSGPIPK------SFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV  356 (445)
Q Consensus       283 ~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  356 (445)
                      ....++.++++++.+.+..+.      .+..+++|+.|++++|.+                   .. .+ .+..+++|++
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-------------------~~-l~-~~~~l~~L~~   74 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-------------------EK-IS-SLSGMENLRI   74 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-------------------SC-CC-CHHHHTTCCE
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-------------------cc-cc-ccccCCCCCE
Confidence            334555555555555544333      555666666666655554                   33 44 6778899999


Q ss_pred             EECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccC-ccccCCCCccEEeCCCCc
Q 039967          357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP-KSIGNLLRLCYLDLSNNQ  435 (445)
Q Consensus       357 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~  435 (445)
                      |++++|.+. .+|..+..+++|+.|++++|++.+ ++ .+..+++|+.|++++|++....+ ..+..+++|++|++++|+
T Consensus        75 L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           75 LSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             EECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            999999998 667777888999999999999984 45 68889999999999999985443 578899999999999999


Q ss_pred             ccccCCC
Q 039967          436 FGHKILV  442 (445)
Q Consensus       436 ~~~~~~~  442 (445)
                      +.+.+|.
T Consensus       152 l~~~~~~  158 (198)
T 1ds9_A          152 LYNDYKE  158 (198)
T ss_dssp             HHHHHHT
T ss_pred             ccccccc
Confidence            9876553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=3.7e-13  Score=123.67  Aligned_cols=178  Identities=17%  Similarity=0.166  Sum_probs=119.9

Q ss_pred             cccccEEecccCccCCCccccccc-----cCCccEEEcCCCcccCCCCcc-ccccCccceeeccCccccccc--------
Q 039967          260 LTSLSELELCTNHLSGVIPHSIGN-----LTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLNQNNLSGKV--------  325 (445)
Q Consensus       260 ~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--------  325 (445)
                      .+.|+.|++++|.+.......+..     .+.|+.|++++|.+.+..... ...+++|+.|++++|.+.+..        
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467899999999887544433332     268999999999886443222 335678999999999886432        


Q ss_pred             --cCCCcceEEcccCccccC----CCccccCCCCCcEEECCCCcccccc----chhhccccCCCEEEccCCeeecc----
Q 039967          326 --NVPKLGTFIISVNNISES----IPPEIGDSPKLQVLDLSSNNIVGEI----PVQLGKLFSLNKLILNLNQLSGG----  391 (445)
Q Consensus       326 --~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----  391 (445)
                        ..+.|+.|++++|.++..    +...+..+++|++|++++|.+.+..    +..+..+++|++|++++|.+.+.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              246788899988887642    2333456788899999988887543    45566778889999998888643    


Q ss_pred             cchhhcCCccCceeecCCCccccccCccccCC---C--CccEEe--CCCCccc
Q 039967          392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNL---L--RLCYLD--LSNNQFG  437 (445)
Q Consensus       392 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~l~--l~~~~~~  437 (445)
                      +...+...++|+.|+|++|.++......+..+   .  .|+.+.  +.++.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            23344556788999999988876655555322   1  166666  6666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=2.8e-13  Score=124.55  Aligned_cols=178  Identities=18%  Similarity=0.150  Sum_probs=112.1

Q ss_pred             CCcccEEEeeCccccccChhhhcc-----cccccEEecccCccCCCccccc-cccCCccEEEcCCCcccCCCCccc----
Q 039967          236 LSSLRALYLYNNGLYSFVPEEIRY-----LTSLSELELCTNHLSGVIPHSI-GNLTGLLLLNMCENHLSGPIPKSF----  305 (445)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~----  305 (445)
                      .+.|+.+++++|.+.......+..     .++|++|++++|.+.......+ ..+++|+.|++++|.+.+.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            357888888888776533333222     2578888888887764333333 345678888888887764433322    


Q ss_pred             -cccCccceeeccCcccccc---------ccCCCcceEEcccCccccCC----CccccCCCCCcEEECCCCcccccc---
Q 039967          306 -KNLTSVERVLLNQNNLSGK---------VNVPKLGTFIISVNNISESI----PPEIGDSPKLQVLDLSSNNIVGEI---  368 (445)
Q Consensus       306 -~~~~~L~~L~l~~~~~~~~---------~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---  368 (445)
                       ...+.|+.|++++|.+.+.         ...++|+.|++++|.+.+..    ...+..++.|++|++++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2357788888888887642         22678888888888876432    344566678888888888887543   


Q ss_pred             -chhhccccCCCEEEccCCeeecccchhhcCC---cc--Cceee--cCCCccc
Q 039967          369 -PVQLGKLFSLNKLILNLNQLSGGMPLELGSL---IE--LQYLD--LSTNKLK  413 (445)
Q Consensus       369 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~--L~~L~--l~~~~~~  413 (445)
                       +..+..+++|++|++++|++.+.....+..+   ..  |+.+.  +.++.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence             3344566888888888888864444443322   11  66666  5555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=7.8e-11  Score=95.66  Aligned_cols=105  Identities=24%  Similarity=0.222  Sum_probs=69.7

Q ss_pred             ccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcccc
Q 039967          287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVG  366 (445)
Q Consensus       287 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  366 (445)
                      .+.++++++.+. .+|..+  .+.++.|++++|                   ++.+..+..+..+++|++|++++|.+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N-------------------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   68 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDN-------------------QITKLEPGVFDRLTQLTRLDLDNNQLTV   68 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSS-------------------CCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCC-------------------cCCccChhhhcCcccCCEEECCCCCcCc
Confidence            456777777766 344333  245555555555                   4445556667777777777777777776


Q ss_pred             ccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          367 EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       367 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      ..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|++.
T Consensus        69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            66666677777777777777777554555777777777777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=5.3e-10  Score=91.03  Aligned_cols=103  Identities=25%  Similarity=0.350  Sum_probs=47.6

Q ss_pred             cEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCC
Q 039967          120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN  199 (445)
Q Consensus       120 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  199 (445)
                      +.++++++.++ .+|..+.  ++|++|++++|.+....+..|.++++|+.|++++|.+....+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34555555544 2333332  45555555555554333444555555555555555544333333344455555555555


Q ss_pred             ccCCCCCccccCCCCcCEEEccCccc
Q 039967          200 SLSGSLPPILGNLKSLSALGLHINQL  225 (445)
Q Consensus       200 ~~~~~~~~~~~~l~~L~~L~l~~~~~  225 (445)
                      .+....+..+..+++|+.+++++|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            44433333344444444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=9e-10  Score=100.76  Aligned_cols=102  Identities=23%  Similarity=0.144  Sum_probs=83.9

Q ss_pred             EEcccC-ccccCCCccccCCCCCcEEECCC-CccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCC
Q 039967          333 FIISVN-NISESIPPEIGDSPKLQVLDLSS-NNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTN  410 (445)
Q Consensus       333 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  410 (445)
                      ++..++ .+. .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..+..|.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            344444 454 4555 88888999999996 8888777788999999999999999998777788899999999999999


Q ss_pred             ccccccCccccCCCCccEEeCCCCccc
Q 039967          411 KLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       411 ~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      ++....+..|..++ |++|++.+|+|.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            99866666676666 999999999887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=3.1e-09  Score=96.73  Aligned_cols=194  Identities=15%  Similarity=0.169  Sum_probs=115.0

Q ss_pred             CcccEEEeeCcccc-ccC-------hhhhcccccccEEecccCccC---------CCccccccccCCccEEEcCCCcccC
Q 039967          237 SSLRALYLYNNGLY-SFV-------PEEIRYLTSLSELELCTNHLS---------GVIPHSIGNLTGLLLLNMCENHLSG  299 (445)
Q Consensus       237 ~~L~~L~l~~~~~~-~~~-------~~~~~~~~~L~~L~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~~  299 (445)
                      ++++.|.+..+... ...       ......+++|+.|.+.+....         ......+..++.|+.|++.++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            35667766654322 111       122445678999988654221         112234566788999999887311 


Q ss_pred             CCCccccccCccceeeccCccccccc-------cCCCcceEEcccC--ccccC-----CCccc--cCCCCCcEEECCCCc
Q 039967          300 PIPKSFKNLTSVERVLLNQNNLSGKV-------NVPKLGTFIISVN--NISES-----IPPEI--GDSPKLQVLDLSSNN  363 (445)
Q Consensus       300 ~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~~  363 (445)
                      ..+. + ..++|+.|.+..+.+....       .+|+|+.|++..+  ...+.     +...+  ..+|+|++|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            1222 3 3778888888877765332       4788888887531  11111     11122  246888888888888


Q ss_pred             cccccchhhc---cccCCCEEEccCCeeecccc----hhhcCCccCceeecCCCccccccCccccC-CCCccEEeCCCCc
Q 039967          364 IVGEIPVQLG---KLFSLNKLILNLNQLSGGMP----LELGSLIELQYLDLSTNKLKSSIPKSIGN-LLRLCYLDLSNNQ  435 (445)
Q Consensus       364 ~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~  435 (445)
                      +.+..+..+.   .+++|++|+|+.|.+.+...    ..+..+++|+.|++++|.++......+.. +  ..++++++++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            7654433332   47788888888887764322    22344678888888888877655555543 2  3556776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=1.5e-08  Score=92.24  Aligned_cols=195  Identities=16%  Similarity=0.183  Sum_probs=116.0

Q ss_pred             CCcCEEEccCcccc-CC-------CCccccCCCcccEEEeeCcccc---------ccChhhhcccccccEEecccCccCC
Q 039967          213 KSLSALGLHINQLS-GV-------IPSSIGNLSSLRALYLYNNGLY---------SFVPEEIRYLTSLSELELCTNHLSG  275 (445)
Q Consensus       213 ~~L~~L~l~~~~~~-~~-------~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~  275 (445)
                      ..++.|.+...... ..       ...+...+++|+.|.+......         ......+..+|+|+.|.+.++.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            34667776644322 11       0122345678888887654221         1133455667889999998763111


Q ss_pred             CccccccccCCccEEEcCCCcccCCCCcccc--ccCccceeeccC--cc------cc------ccccCCCcceEEcccCc
Q 039967          276 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFK--NLTSVERVLLNQ--NN------LS------GKVNVPKLGTFIISVNN  339 (445)
Q Consensus       276 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~--~~------~~------~~~~~~~L~~L~l~~~~  339 (445)
                      . +. + ..++|++|++..|.+.......+.  .+|+|+.|+|+.  +.      +.      ....+|+|+.|++.+|.
T Consensus       187 l-~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          187 I-GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             C-CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             e-cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            1 21 2 267899999888776543323333  678888888752  11      10      11237899999998887


Q ss_pred             cccCCCccc---cCCCCCcEEECCCCcccccc----chhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCc
Q 039967          340 ISESIPPEI---GDSPKLQVLDLSSNNIVGEI----PVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK  411 (445)
Q Consensus       340 ~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  411 (445)
                      +....+..+   ..++.|++|+++.|.+.+..    +..+..+++|+.|++++|.+.+.....+...- ...+++++++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence            753222212   25688999999988887543    33345678899999998887644333343210 2457777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.77  E-value=2.7e-08  Score=90.88  Aligned_cols=103  Identities=20%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             eEEecCC-cCCCCccccccCCCCCcEEEccC-CcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCC
Q 039967           97 NFYLNNN-SLFNSIPLVLGNLNSLSTMDLSQ-NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE  174 (445)
Q Consensus        97 ~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  174 (445)
                      .++++++ .+. .+|. +..+.+|+.|+|++ |.++...+..|..+++|+.|++++|.+....+..|.++++|+.|++++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566655 444 4666 77777888888875 777766666777788888888888877766666777788888888888


Q ss_pred             ccccccccccccCCCCCcEEEccCCccC
Q 039967          175 NQLIGSIPLSFGNLSSLTLMSLFNNSLS  202 (445)
Q Consensus       175 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  202 (445)
                      |.+....+..+..++ |+.|.+.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            877754444444444 777777777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.73  E-value=3.8e-09  Score=84.37  Aligned_cols=83  Identities=18%  Similarity=0.166  Sum_probs=40.9

Q ss_pred             CCcEEECCCCccccccchhhccccCCCEEEccCCe-eecccchhhcCC----ccCceeecCCCc-cccccCccccCCCCc
Q 039967          353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSL----IELQYLDLSTNK-LKSSIPKSIGNLLRL  426 (445)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~L  426 (445)
                      .|+.||+++|.+++.....+..|++|++|+|++|. +++..-..+..+    ++|+.|+|++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            35555555555554444444555555555555553 332222333332    245555555553 444444445555555


Q ss_pred             cEEeCCCCc
Q 039967          427 CYLDLSNNQ  435 (445)
Q Consensus       427 ~~l~l~~~~  435 (445)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=2.1e-08  Score=82.31  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             cccccCccceeeccCc-cccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcccccc----chhhccccCC
Q 039967          304 SFKNLTSVERVLLNQN-NLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEI----PVQLGKLFSL  378 (445)
Q Consensus       304 ~~~~~~~L~~L~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L  378 (445)
                      .+...+.|++|++++| .+.+...               ..+...+...++|++|++++|.+.+..    ...+...++|
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~---------------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L   95 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTL---------------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL   95 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHH---------------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHH---------------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence            3445666777777666 5542211               012234455677888888888877543    3344556788


Q ss_pred             CEEEccCCeeecc----cchhhcCCccCceeec--CCCccccccC----ccccCCCCccEEeCCCCccc
Q 039967          379 NKLILNLNQLSGG----MPLELGSLIELQYLDL--STNKLKSSIP----KSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       379 ~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~  437 (445)
                      ++|+|++|.+.+.    +...+...++|+.|+|  ++|.+.....    ..+...++|++|++++|.+.
T Consensus        96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            8888888887643    2345566678888888  7788776543    34455678888888888765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=5e-08  Score=77.90  Aligned_cols=99  Identities=15%  Similarity=0.064  Sum_probs=70.1

Q ss_pred             CcceEEcccCccccCCCccccCCCCCcEEECCCCc-cccccchhhcc----ccCCCEEEccCCe-eecccchhhcCCccC
Q 039967          329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGK----LFSLNKLILNLNQ-LSGGMPLELGSLIEL  402 (445)
Q Consensus       329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~L  402 (445)
                      .|+.|++++|.++......+..|++|++|++++|. +++.....+..    +++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45566666666655555567789999999999996 77665556655    4689999999996 665555667889999


Q ss_pred             ceeecCCCc-ccccc--Cccc-cCCCCcc
Q 039967          403 QYLDLSTNK-LKSSI--PKSI-GNLLRLC  427 (445)
Q Consensus       403 ~~L~l~~~~-~~~~~--~~~~-~~~~~L~  427 (445)
                      +.|++++|. +++..  ...+ ..+|+++
T Consensus       142 ~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            999999997 44321  1222 3566655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=1.5e-07  Score=77.20  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             ccccccCCccEEEcCCC-cccCC----CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCC
Q 039967          279 HSIGNLTGLLLLNMCEN-HLSGP----IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPK  353 (445)
Q Consensus       279 ~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  353 (445)
                      ..+...+.|++|++++| .+.+.    +...+...+.|++|++++|.+.+...               ..+...+...+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~---------------~~l~~~L~~n~~   94 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA---------------FALAEMLKVNNT   94 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH---------------HHHHHHHHHCSS
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH---------------HHHHHHHHhCCC
Confidence            34566789999999999 87643    23345566788888888887653321               011223444577


Q ss_pred             CcEEECCCCccccc----cchhhccccCCCEEEc--cCCeeecc----cchhhcCCccCceeecCCCcccc
Q 039967          354 LQVLDLSSNNIVGE----IPVQLGKLFSLNKLIL--NLNQLSGG----MPLELGSLIELQYLDLSTNKLKS  414 (445)
Q Consensus       354 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  414 (445)
                      |++|++++|.+.+.    +...+...++|++|++  ++|.+...    +...+...++|+.|++++|.+..
T Consensus        95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A           95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            88888888887754    3445566778888888  77877543    23345556788888888888753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.04  E-value=4.5e-06  Score=71.92  Aligned_cols=80  Identities=26%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             CCCCCcEEECCCCcccc--ccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC-------cc
Q 039967          350 DSPKLQVLDLSSNNIVG--EIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP-------KS  419 (445)
Q Consensus       350 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-------~~  419 (445)
                      .++.|+.|++++|.+.+  .++..+..+++|+.|+|++|.+.+.. ...+..+ +|+.|++++|++.+..+       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            45677777777777765  23355567777777777777776431 1222333 77777777777764332       23


Q ss_pred             ccCCCCccEEe
Q 039967          420 IGNLLRLCYLD  430 (445)
Q Consensus       420 ~~~~~~L~~l~  430 (445)
                      +..+|+|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            55677777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.03  E-value=1.1e-06  Score=75.79  Aligned_cols=90  Identities=27%  Similarity=0.243  Sum_probs=64.6

Q ss_pred             CCCcE--EECCCCccc---cccchhhccccCCCEEEccCCeeec--ccchhhcCCccCceeecCCCcccccc-CccccCC
Q 039967          352 PKLQV--LDLSSNNIV---GEIPVQLGKLFSLNKLILNLNQLSG--GMPLELGSLIELQYLDLSTNKLKSSI-PKSIGNL  423 (445)
Q Consensus       352 ~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~  423 (445)
                      +.|+.  ++++.|...   ........++++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.. ...+..+
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l  220 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL  220 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC
Confidence            44544  556666433   1222233578999999999999986  33456778999999999999998651 2233334


Q ss_pred             CCccEEeCCCCcccccCCC
Q 039967          424 LRLCYLDLSNNQFGHKILV  442 (445)
Q Consensus       424 ~~L~~l~l~~~~~~~~~~~  442 (445)
                       .|++|++.+|++.+++|+
T Consensus       221 -~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          221 -KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             -CCSEEECTTSTTGGGCSS
T ss_pred             -CcceEEccCCcCccccCc
Confidence             999999999999987763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.22  E-value=0.00012  Score=59.45  Aligned_cols=89  Identities=12%  Similarity=0.045  Sum_probs=54.5

Q ss_pred             cccCCCCCcEEECCCCccccccc----hhhccccCCCEEEccCCeeeccc----chhhcCCccCceeecCCCcc---ccc
Q 039967          347 EIGDSPKLQVLDLSSNNIVGEIP----VQLGKLFSLNKLILNLNQLSGGM----PLELGSLIELQYLDLSTNKL---KSS  415 (445)
Q Consensus       347 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~  415 (445)
                      .+..-+.|+.|+|++|.+.+...    ..+...++|++|+|++|.+....    .+.+..-..|+.|+|++|..   ...
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~  144 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  144 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence            44455677788888777775433    33445677888888888775322    23445556788888876532   221


Q ss_pred             ----cCccccCCCCccEEeCCCCc
Q 039967          416 ----IPKSIGNLLRLCYLDLSNNQ  435 (445)
Q Consensus       416 ----~~~~~~~~~~L~~l~l~~~~  435 (445)
                          ..+++..-+.|++|+++.|.
T Consensus       145 g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          145 VEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCcCeEeccCCC
Confidence                22345566777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.00063  Score=55.30  Aligned_cols=87  Identities=14%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             ccCCCCCcEEECCCC-ccccc----cchhhccccCCCEEEccCCeeecc----cchhhcCCccCceeecCCCccccccC-
Q 039967          348 IGDSPKLQVLDLSSN-NIVGE----IPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLIELQYLDLSTNKLKSSIP-  417 (445)
Q Consensus       348 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~-  417 (445)
                      +..-+.|++|+++++ .+.+.    +...+..-+.|+.|+|++|++.+.    +.+.+..-+.|+.|+|++|.+...+. 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345688999999986 77643    445667789999999999999643    33445566899999999999987654 


Q ss_pred             ---ccccCCCCccEEeCCCC
Q 039967          418 ---KSIGNLLRLCYLDLSNN  434 (445)
Q Consensus       418 ---~~~~~~~~L~~l~l~~~  434 (445)
                         +++..-+.|++|++++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence               45667778999999876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.69  E-value=0.0023  Score=48.45  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=26.6

Q ss_pred             EEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967          356 VLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL  412 (445)
Q Consensus       356 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  412 (445)
                      .++.++..++ ..+|..+  .+++++|+|++|.+....+..|..+++|+.|+|++|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555543 1333222  12455555555555533334445555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.55  E-value=0.03  Score=42.24  Aligned_cols=38  Identities=26%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             CCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967          352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS  389 (445)
Q Consensus       352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  389 (445)
                      ++|++|+|++|.++...+..|..+++|+.|+|.+|++.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46888888888888666677788888888888888774

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.47  E-value=1.5  Score=30.92  Aligned_cols=48  Identities=8%  Similarity=0.059  Sum_probs=30.6

Q ss_pred             CcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCc
Q 039967           17 NILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN   65 (445)
Q Consensus        17 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~   65 (445)
                      ..++.+....|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            3455555666777777777777654 33355667777777777776543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=83.18  E-value=2  Score=30.25  Aligned_cols=39  Identities=13%  Similarity=0.090  Sum_probs=25.4

Q ss_pred             CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCc
Q 039967            2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSN   41 (445)
Q Consensus         2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   41 (445)
                      +|..|.+|+.+.|... ++.+-...|.+|.+|+.+.+.+.
T Consensus        15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A           15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            5667777777777654 45555666777777777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 1e-18
 Identities = 57/279 (20%), Positives = 99/279 (35%), Gaps = 21/279 (7%)

Query: 7   PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQ 66
           P    L+L  N +  I      NL NL  L L +N++S + P     L +L  LY   NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 67  LHGSIPLEIGQLSLINVLALCHNYFVCN---------LANFYLNNNSLFNSIPLVLGNLN 117
           L          L  + V          +         +     N              + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
            LS + ++    +    +  G   +L +L+L  N  +    + +  L +L +L LS N +
Sbjct: 151 KLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS----- 232
                 S  N   L  + L NN L    P  L + K +  + LH N +S +  +      
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 233 -IGNLSSLRALYLYNNGL--YSFVPEEIRYLTSLSELEL 268
                +S   + L++N +  +   P   R +   + ++L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (189), Expect = 2e-16
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 10/255 (3%)

Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248
               L+ L NN ++        NLK+L  L L  N++S + P +   L  L  LYL  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL 308
           L     +  + L  L   E     +   + + + N   ++ L       SG    +F+ +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 309 TSVERVLLNQNNLSG--KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVG 366
             +  + +   N++   +   P L    +  N I++     +     L  L LS N+I  
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 367 EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS------SIPKSI 420
                L     L +L LN N+L   +P  L     +Q + L  N + +        P   
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 421 GNLLRLCYLDLSNNQ 435
                   + L +N 
Sbjct: 269 TKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 19/283 (6%)

Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
            L  +  S       +P  L    +   L L +N  +        NLK+L  L L  N++
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
               P +F  L  L  + L  N L      +   L+ L      I ++   + + +  + 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL 297
            +  L               + +  LS + +   +++ +     G    L  L++  N +
Sbjct: 128 VVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKI 183

Query: 298 SGPIPKSFKNLTSVERVLLNQNNLSGKVN-----VPKLGTFIISVNNISESIPPEIGDSP 352
           +     S K L ++ ++ L+ N++S   N      P L    ++ N +   +P  + D  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHK 242

Query: 353 KLQVLDLSSNNI------VGEIPVQLGKLFSLNKLILNLNQLS 389
            +QV+ L +NNI          P    K  S + + L  N + 
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 36/203 (17%), Positives = 72/203 (35%), Gaps = 26/203 (12%)

Query: 238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL 297
            LR +   + GL   VP+++      + L+L  N ++ +      NL  L  L +  N +
Sbjct: 11  HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 298 SGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVL 357
           S   P +F  L  +ER+ L++N L                      +P ++  + +   +
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLK--------------------ELPEKMPKTLQELRV 107

Query: 358 DLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP 417
             +    V +          + +L  N  + SG        + +L Y+ ++   + +   
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 167

Query: 418 KSIGNLLRLCYLDLSNNQFGHKI 440
              G    L  L L  N+     
Sbjct: 168 ---GLPPSLTELHLDGNKITKVD 187

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 20/189 (10%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F   +   +V L  +     GI       +  L Y+ +    ++    +  G    L  L
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTEL 176

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSL---------FNSIPL 111
           + D N++       +  L+ +  L L  N           N   L            +P 
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 112 VLGNLNSLSTMDLSQNQFSG------SIPLSLGNLSNLDKLYLYSN--SFSGSIPSIIGN 163
            L +   +  + L  N  S         P      ++   + L+SN   +    PS    
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

Query: 164 LKSLLQLDL 172
           +     + L
Sbjct: 297 VYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
            +P ++   P   +LDL +N I          L +L+ LIL  N++S   P     L++L
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
           + L LS N+LK    K    L  L   +    +    +   L
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 2e-18
 Identities = 58/277 (20%), Positives = 91/277 (32%), Gaps = 19/277 (6%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           +P  I   +  Q + L  N++S V          L IL+   N L               
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--------- 74

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN 142
                             +N  L +  P     L  L T+ L +       P     L+ 
Sbjct: 75  ----AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
           L  LYL  N+          +L +L  L L  N++      +F  L SL  + L  N ++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS 262
              P    +L  L  L L  N LS +   ++  L +L+ L L +N               
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLWAW 249

Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG 299
           L +    ++ +   +P     L G  L  +  N L G
Sbjct: 250 LQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 4e-15
 Identities = 70/293 (23%), Positives = 112/293 (38%), Gaps = 27/293 (9%)

Query: 99  YLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP 158
                 L  ++P+ +    +   + L  N+ S     S     NL  L+L+SN  +    
Sbjct: 17  SCPQQGL-QAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 159 SIIGNLKSLLQLDLSENQLIGSI-PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSA 217
           +    L  L QLDLS+N  + S+ P +F  L  L  + L    L    P +   L +L  
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
           L L  N L  +   +  +L +L  L+L+ N + S      R L SL  L L  N ++ V 
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISV 337
           PH+  +L  L+ L +  N+LS    ++   L +++ + LN N                  
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-------------- 239

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
                           LQ    SS+ +   +P +L          L  N L G
Sbjct: 240 ------DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 47/243 (19%), Positives = 79/243 (32%), Gaps = 12/243 (4%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
                 + L  N +  +         NL  L L SN L+ +       L  L  L    N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 66  QLHGSI-PLEIGQLSLINVLALCH----------NYFVCNLANFYLNNNSLFNSIPLVLG 114
               S+ P     L  ++ L L               +  L   YL +N+L         
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
           +L +L+ + L  N+ S     +   L +LD+L L+ N  +   P    +L  L+ L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 234
           N L      +   L +L  + L +N               L       +++   +P  + 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 235 NLS 237
              
Sbjct: 270 GRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 16  FNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI 75
              L  + P     L  L  L L    L  + P     L  L+ LY   N L        
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 76  GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPL 135
                           + NL + +L+ N + +        L+SL  + L QN+ +   P 
Sbjct: 150 --------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 136 SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMS 195
           +  +L  L  LYL++N+ S      +  L++L  L L++N  +          + L    
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR 254

Query: 196 LFNNSLSGSLPPILGNLKSLSALGLHINQLSG 227
             ++ +  SLP     L       L  N L G
Sbjct: 255 GSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 44/201 (21%), Positives = 64/201 (31%), Gaps = 18/201 (8%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
           F     L  L+L    L  + P     L+ LQYL L  N L  +       L  L  L+ 
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
             N++          L               +L    L+ N + +  P    +L  L T+
Sbjct: 161 HGNRISSVPERAFRGLH--------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
            L  N  S     +L  L  L  L L  N +             L +   S +++  S+P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLP 265

Query: 183 LSFGNLSSLTLMSLFNNSLSG 203
                     L  L  N L G
Sbjct: 266 QRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 8/214 (3%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
           +P  I   ++ + ++L+ N +        R   +L+ L L +N L+ +   +   L  L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 289 LLNMCENHLSGPI-PKSFKNLTSVERVLLNQN-----NLSGKVNVPKLGTFIISVNNISE 342
            L++ +N     + P +F  L  +  + L++             +  L    +  N +  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
                  D   L  L L  N I          L SL++L+L+ N+++   P     L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
             L L  N L +   +++  L  L YL L++N +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 61/282 (21%), Positives = 92/282 (32%), Gaps = 47/282 (16%)

Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSL 215
           ++P  I    +  ++ L  N++      SF    +LT++ L +N L+         L  L
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 216 SALGLHINQLSGVI-PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
             L L  N     + P++   L  L  L+L   GL    P   R L +L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFI 334
            +   +  +L  L  L +  N +S    ++F+ L S                        
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------------------------ 178

Query: 335 ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
                              L  L L  N +    P     L  L  L L  N LS     
Sbjct: 179 -------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            L  L  LQYL L+ N        +      L     S+++ 
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 260

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 34/154 (22%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F    +L HL L  N +  +       L +L  L L  N+++ V P     L +L  LY
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
              N L       +  L  +  L L  N +VC+     L                  L  
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL---------------WAWLQK 252

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG 155
              S ++   S+P  L          L +N   G
Sbjct: 253 FRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 9/203 (4%)

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
                 GL + VP  I    +   + L  N +S V   S      L +L +  N L+   
Sbjct: 16  TSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 302 PKSFKNLTSVERVLLNQNNLSGKVN------VPKLGTFIISVNNISESIPPEIGDSPKLQ 355
             +F  L  +E++ L+ N     V+      + +L T  +    + E  P        LQ
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSS 415
            L L  N +          L +L  L L+ N++S         L  L  L L  N++   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 416 IPKSIGNLLRLCYLDLSNNQFGH 438
            P +  +L RL  L L  N    
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSA 215

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.1 bits (204), Expect = 5e-18
 Identities = 89/384 (23%), Positives = 150/384 (39%), Gaps = 42/384 (10%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63
           +    +  L      +  I    +  L+NL  ++  +NQL+ + PL   +L +L  +  +
Sbjct: 41  TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMN 96

Query: 64  VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-VLGNLNSLSTM 122
            NQ+    PL          L       +  L N    N    +S  +  +  L+ L+++
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
                    +    L NL+ L++L + SN    S  S++  L +L  L  + NQ+    P
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 214

Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
              G L++L  +SL  N L       L +L +L+ L L  NQ+S + P  +  L+ L  L
Sbjct: 215 --LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 268

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
            L  N + +  P  +  LT+L+ LEL  N         I NL  L  L +  N++S   P
Sbjct: 269 KLGANQISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
               +LT ++R+    N +S                         + +   +  L    N
Sbjct: 325 --VSSLTKLQRLFFANNKVSD---------------------VSSLANLTNINWLSAGHN 361

Query: 363 NIVGEIPVQLGKLFSLNKLILNLN 386
            I    P  L  L  + +L LN  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 2e-15
 Identities = 77/355 (21%), Positives = 136/355 (38%), Gaps = 30/355 (8%)

Query: 94  NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153
            +     +   +  SI   +  LN+L+ ++ S NQ +   PL   NL+ L  + + +N  
Sbjct: 45  QVTTLQADRLGI-KSID-GVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQI 100

Query: 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG---------NLSSLTLMSLFNNSLSGS 204
           +   P       + L L  ++   I  +               +S ++ +S   +    S
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 205 LPPILGNLKSLSALGLHI----NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
               + +LK L+ L        +       S +  L++L +L   NN +    P  I   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-- 218

Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320
           T+L EL L  N L      ++ +LT L  L++  N +S   P     LT +  + L  N 
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 321 LSGKVNVPKLGTF-IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN 379
           +S    +  L     + +N         I +   L  L L  NNI    P  +  L  L 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 380 KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
           +L    N++S      L +L  + +L    N++    P  + NL R+  L L++ 
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 3e-14
 Identities = 84/361 (23%), Positives = 142/361 (39%), Gaps = 40/361 (11%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
                +L  +N S N L  I P  + NL+ L  + + +NQ++ + PL          L+ 
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 63  DVNQLHGSIPLEIGQLSLINVL-ALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLST 121
           +       +        L      +     +  L +    +     +    L NL +L  
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
           +D+S N+ S    L+   L+NL+ L   +N  S   P  I    +L +L L+ NQL    
Sbjct: 180 LDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-- 233

Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
             +  +L++LT + L NN +S   P  L  L  L+ L L  NQ+S + P  +  L++L  
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 289

Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
           L L  N         I  L +L+ L L  N++S + P  + +LT L  L    N +S   
Sbjct: 290 LELNEN--QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-- 343

Query: 302 PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS 361
             S  NLT++  +    N +S                         + +  ++  L L+ 
Sbjct: 344 VSSLANLTNINWLSAGHNQISD---------------------LTPLANLTRITQLGLND 382

Query: 362 N 362
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 65/336 (19%), Positives = 115/336 (34%), Gaps = 28/336 (8%)

Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
            L       L +   + ++  +  +L  +  L         SI  +   L +L Q++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGV-EYLNNLTQINFSN 75

Query: 175 NQLIGSIPLSFGNLSSLTL------------MSLFNNSLSGSLPPILGNLKSLSALGLHI 222
           NQL    P    NL+ L                    +L+G                L  
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI- 281
                +  ++I ++S+L  L       +     +++ L +L+ LE      + V   S+ 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 282 GNLTGLLLLNMCENHLSGPIPKSF-KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNI 340
             LT L  L    N +S   P     NL  +        ++    ++  L    ++ N I
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253

Query: 341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI 400
           S   P  +    KL  L L +N I    P+      +  +L  N  +    +     +L 
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS----NLK 307

Query: 401 ELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
            L YL L  N +    P  + +L +L  L  +NN+ 
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
             SS   L  L  + N +       + NL+N+ +L  G NQ+S + PL   +L ++  L 
Sbjct: 324 PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLG 379

Query: 62  FDVN 65
            +  
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 65/317 (20%), Positives = 108/317 (34%), Gaps = 52/317 (16%)

Query: 163 NLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221
            L   ++  L +  +  ++  +    +++L    L   S+ G     +  L +L+ +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI 281
            NQL+ + P  + NL+ L  + + NN +    P       +   L          + +  
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 282 GNLTGLLLLN---------------MCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN 326
                 L  N                          K   NLT++ER+ ++ N +S    
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 327 VPKLG---TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL 383
           + KL    + I + N IS+  P  I     L  L L+ N +       L  L +L  L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 384 NLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP--------------------KSIGNL 423
             NQ+S   PL    L +L  L L  N++ +  P                      I NL
Sbjct: 249 ANNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 424 LRLCYLDLSNNQFGHKI 440
             L YL L  N      
Sbjct: 307 KNLTYLTLYFNNISDIS 323

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.5 bits (176), Expect = 9e-15
 Identities = 65/285 (22%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 114 GNLNSLSTMDLSQNQFSG--SIPLSLGNLSNLDKLYLYSN-SFSGSIPSIIGNLKSLLQL 170
                ++ +DLS         IP SL NL  L+ LY+    +  G IP  I  L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
            ++   + G+IP     + +L  +    N+LSG+LPP + +L +L  +    N++SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 231 SSIGNLSSLRA-LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289
            S G+ S L   + +  N L   +P     L                      +      
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK- 225

Query: 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIG 349
                 +             ++  + L  N + G                   ++P  + 
Sbjct: 226 -IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-------------------TLPQGLT 265

Query: 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
               L  L++S NN+ GEIP Q G L   +      N+   G PL
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 2e-14
 Identities = 65/270 (24%), Positives = 96/270 (35%), Gaps = 41/270 (15%)

Query: 4   SSFPHLVHLNLSFNILFGI--IPPQIGNLSNLQYLDLGSN-QLSGVIPLEIGHLNQLRIL 60
           +    + +L+LS   L     IP  + NL  L +L +G    L G IP  I  L QL  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
           Y     + G+IP                   +  L     + N+L  ++P  + +L +L 
Sbjct: 107 YITHTNVSGAIP--------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 121 TMDLSQNQFSGSIPLSLGNLSNL-----------------------DKLYLYSNSFSGSI 157
            +    N+ SG+IP S G+ S L                             S +     
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 158 PSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSA 217
            S++       Q        +       G   +L  + L NN + G+LP  L  LK L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
           L +  N L G IP   GNL         NN
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 3e-14
 Identities = 67/263 (25%), Positives = 104/263 (39%), Gaps = 8/263 (3%)

Query: 162 GNLKSLLQLDLSENQLIG--SIPLSFGNLSSLTLMSLFNN-SLSGSLPPILGNLKSLSAL 218
                +  LDLS   L     IP S  NL  L  + +    +L G +PP +  L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP 278
            +    +SG IP  +  + +L  L    N L   +P  I  L +L  +    N +SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 279 HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVN 338
            S G+ + L        +             ++  V L++N L G  +V           
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 339 NI----SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
           ++          ++G S  L  LDL +N I G +P  L +L  L+ L ++ N L G +P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 395 ELGSLIELQYLDLSTNKLKSSIP 417
           + G+L        + NK     P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.9 bits (172), Expect = 3e-14
 Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 8/258 (3%)

Query: 186 GNLSSLTLMSLFNNSLSG--SLPPILGNLKSLSALGLHIN-QLSGVIPSSIGNLSSLRAL 242
                +  + L   +L     +P  L NL  L+ L +     L G IP +I  L+ L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
           Y+ +  +   +P+ +  + +L  L+   N LSG +P SI +L  L+ +    N +SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
            S+ + + +   +    N       P      ++  ++S ++             +    
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 363 NIVGEIPVQLGKLFSLNKLI----LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK 418
           ++             L+K +    L  N++ G +P  L  L  L  L++S N L   IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 419 SIGNLLRLCYLDLSNNQF 436
             GNL R      +NN+ 
Sbjct: 286 QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 3e-13
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 10/188 (5%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV- 64
              LV L+ S+N L G +PP I +L NL  +    N++SG IP   G  ++L        
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 65  NQLHGSIPLEIGQLSLINVLALCHNYFVCNLANF--------YLNNNSLFNSIPLVLGNL 116
           N+L G IP     L+L  V    +         F             +        +G  
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ 176
            +L+ +DL  N+  G++P  L  L  L  L +  N+  G IP   GNL+       + N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

Query: 177 LIGSIPLS 184
            +   PL 
Sbjct: 303 CLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 9/239 (3%)

Query: 210 GNLKSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNN-GLYSFVPEEIRYLTSLSEL 266
                ++ L L    L     IPSS+ NL  L  LY+     L   +P  I  LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 267 ELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN 326
            +   ++SG IP  +  +  L+ L+   N LSG +P S  +L ++  +  + N +SG + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 327 -----VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL 381
                  KL T +    N   +       +         S N++      L       + 
Sbjct: 167 DSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI 440
           I            ++G    L  LDL  N++  ++P+ +  L  L  L++S N    +I
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPL 49
             +    L  LN+SFN L G I PQ GNL         +N+     PL
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 5e-11
 Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 8/180 (4%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIP-------LEIGHLNQLR 58
                 L+LS N+L+      +   + L  L+L   +L+ +           +   +   
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 59  ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNS 118
                + Q   ++ +     + +  L L     +  L   YL  N L    P +L     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
           L  + L+ N  +      L  L NLD L L  NS   +IP        L    L  N  +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 42/206 (20%), Positives = 67/206 (32%), Gaps = 11/206 (5%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            S     + +N     L  + PP +    +   L L  N L       +    +L  L  
Sbjct: 6   VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFY-------LNNNSLFNSIPLVLGN 115
           D  +L          +     L+      +  L           ++ N L +     L  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
           L  L  + L  N+     P  L     L+KL L +N+ +     ++  L++L  L L EN
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSL 201
            L  +IP  F     L    L  N  
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 6/207 (2%)

Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLN 291
            +  ++S   +      L + +P ++      + L L  N L      ++   T L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 292 M-CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGD 350
           +         +  +   L +++       +L          T +    N   S+P     
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 351 SPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL-NLNQLSGGMPLELGSLIELQYLDLST 409
                       N +  +P  L       + +    N L+      L  L  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 410 NKLKSSIPKSIGNLLRLCYLDLSNNQF 436
           N L  +IPK       L +  L  N +
Sbjct: 182 NSL-YTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 12/210 (5%)

Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
               ++S   ++    +L+ +LPP L   K  + L L  N L     +++   + L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 303
           L          +    L  L  L+L  N L  +          L +L++  N L+     
Sbjct: 62  LDRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG 118

Query: 304 SFKNLTSVERVLLNQNNLSG-----KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLD 358
           + + L  ++ + L  N L           PKL    ++ NN++E     +     L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 359 LSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388
           L  N++   IP        L    L+ N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 48/227 (21%), Positives = 81/227 (35%), Gaps = 26/227 (11%)

Query: 136 SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMS 195
            +  +++  ++     + + ++P  +   K    L LSEN L      +    + LT ++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 196 LFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE 255
           L    L+         L  L  L L  NQL  +         +L  L +  N L S    
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLG 118

Query: 256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVL 315
            +R L  L EL L  N L  + P  +     L  L++  N+L+         L +++ +L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 316 LNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
           L +N+L                     +IP     S  L    L  N
Sbjct: 179 LQENSLY--------------------TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
                 L  L L  N L  + P  +     L+ L L +N L+ +    +  L  L  L  
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCN 94
             N L+ +IP       L+    L  N ++CN
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 13/223 (5%)

Query: 211 NLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT 270
            L +   +    + ++  +  +  +L  +  L  +  G+ +   E ++YL +L  LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKL 330
           N ++ + P        L  +   E   +     S        + L   +     V     
Sbjct: 73  NQITDLAPLK-----NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
            + +  +      I      +    +  LS  N        L  L  L  L  + N++S 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 391 GMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSN 433
             PL   SL  L  + L  N++    P  + N   L  + L+N
Sbjct: 188 ISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 8/218 (3%)

Query: 29  NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88
            L+N   +  G + ++  +      L+ +  L      +  +I   +  L+ +  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 89  NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYL 148
           N          L   +        L N+++++ +   +     S  ++            
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 149 YSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPI 208
                   I +I           LS      S      NLS LT +   +N +S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN 246
           L +L +L  + L  NQ+S V P  + N S+L  + L N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 6/196 (3%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            +    +  L+     +  I    +  L+NL  L+L  NQ++ + PL+         L  
Sbjct: 37  QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94

Query: 63  DVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTM 122
           +  +   +I       +L        +       +         N I  +       +  
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154

Query: 123 DLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIP 182
            LS      S    L NLS L  L    N  S   P  + +L +L+++ L  NQ+    P
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

Query: 183 LSFGNLSSLTLMSLFN 198
           L+  N S+L +++L N
Sbjct: 213 LA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 14/225 (6%)

Query: 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222
            L + +++   ++ +  ++  +  +L  +T +S F   ++ ++  +   L +L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGV-QYLNNLIGLELKD 72

Query: 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG 282
           NQ++ + P       +   L        S +       T        T+        ++ 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE 342
            L   L      + L+G     + ++ +        ++L+   N+ KL T     N IS+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNA-----QVSDLTPLANLSKLTTLKADDNKISD 187

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ 387
             P  +   P L  + L +N I    P  L    +L  + L  NQ
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
            ++   L  L    N +  I P  + +L NL  + L +NQ+S V PL   + + L I+  
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTL 224

Query: 63  DVNQ 66
             NQ
Sbjct: 225 T-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQ 42
             +S P+L+ ++L  N +  + P  + N SNL  + L +NQ
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 3e-08
 Identities = 43/242 (17%), Positives = 75/242 (30%), Gaps = 10/242 (4%)

Query: 1   FAFSSFPHLVHLNLSFN-ILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI 59
               S   + H++LS + I    +   +   S LQ L L   +LS  I   +   + L  
Sbjct: 40  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99

Query: 60  LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSL 119
           L            L+    S      L              +       +   +  LN  
Sbjct: 100 LNLSGCSGFSEFALQTLLSSCSR---LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 156

Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE-NQLI 178
                 Q     ++     NL +LD     S             L  L  L LS    +I
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLD--LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
               L  G + +L  + +F     G+L  +    ++L  L ++ +  + +   +IGN  +
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGNKKN 271

Query: 239 LR 240
             
Sbjct: 272 QE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 15/279 (5%)

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL-IG 179
           T+DL+       +   L +   +       +     +       + +  +DLS + + + 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
           ++       S L  +SL    LS  +   L    +L  L L                S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG 299
           R   L  +  + F  + ++   +     +   +LSG   +   +       ++       
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-------DLSTLVRRC 174

Query: 300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDL 359
           P         SV               +  L   +    +I      E+G+ P L+ L +
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS--LSRCYDIIPETLLELGEIPTLKTLQV 232

Query: 360 SSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS 398
                 G + +      +L  L +N +  +      +G+
Sbjct: 233 FGIVPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLIELQYLDLSTNKLK 413
           Q LDL+  N+  ++    G+L S   +     +     PL E  S   +Q++DLS + ++
Sbjct: 3   QTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 414 -SSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
            S++   +    +L  L L   +    I+  L
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 91

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 40/283 (14%), Positives = 79/283 (27%), Gaps = 36/283 (12%)

Query: 145 KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG- 203
            L L   +    +   + +   ++      + +   +   F     +  M L N+ +   
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 204 SLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
           +L  IL     L  L L   +LS  I +++   S+L  L L     +S    +    +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 323
              EL  +         +      +   + + +LSG      K+            +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----------DLSTLV 171

Query: 324 KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL 383
           +     +   +     +      E      LQ L LS                       
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS----------------------- 208

Query: 384 NLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRL 426
               +     LELG +  L+ L +       ++      L  L
Sbjct: 209 RCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 87  CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKL 146
                +  L       N+  N I  +     SL  +++S N+    +P     L  L   
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI-- 310

Query: 147 YLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTL 193
               N  +  +P +  NLK    L +  N L    P    ++  L +
Sbjct: 311 -ASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG 397
           N  S  I       P L+ L++S+N ++ E+P        L +LI + N L+  +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQ 324

Query: 398 SLIELQYLDLSTNKLKS--SIPKSIGNL 423
           +   L+ L +  N L+    IP+S+ +L
Sbjct: 325 N---LKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 172 LSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS 231
              N     I        SL  +++ NN L   LP +   L+ L       N L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLAE-VPE 321

Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
              NL     L++  N L  F P+    +  L
Sbjct: 322 LPQNLKQ---LHVEYNPLREF-PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 4   SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI 59
           +  P L  L  SFN L  +         NL+ L +  N L    P     +  LR+
Sbjct: 301 ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 3   FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
               P L  LN+S N L  +          L+ L    N L+ V  L       L+ L+ 
Sbjct: 280 CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLHV 331

Query: 63  DVNQLHG--SIPLEIGQLSLIN 82
           + N L     IP  +  L + +
Sbjct: 332 EYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 52/322 (16%), Positives = 99/322 (30%), Gaps = 16/322 (4%)

Query: 8   HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
               L L+   L   +P    +L   + L    N L+  +P     L  L +   ++  L
Sbjct: 39  QAHELELNNLGL-SSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 68  HGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQN 127
               PL        N L         +       +N+    +P +  +L  ++  +    
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 128 QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN 187
           +      L              S      +P  + ++ +   +     +L     L+   
Sbjct: 154 ELPELQNL---PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
             +  L +L +   S     +  N  +             V  +    LS L     Y N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
              + +        SL EL +  N L   +P     L  L+      NHL+  +P+  +N
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASF---NHLAE-VPELPQN 325

Query: 308 LTSVERVLLNQNNLSGKVNVPK 329
           L  +    +  N L    ++P+
Sbjct: 326 LKQLH---VEYNPLREFPDIPE 344

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 3e-06
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 351 SPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMPLELGSLIE----LQYL 405
           S  +Q LD+    +      +L   L     + L+   L+     ++ S +     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 406 DLSTNKLKSSIPKSIGNLL-----RLCYLDLSNNQFGH 438
           +L +N+L       +   L     ++  L L N     
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 9e-06
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 118 SLSTMDLSQNQFSGS-IPLSLGNLSNLDKLYLYSNSFSG----SIPSIIGNLKSLLQLDL 172
            + ++D+   + S +     L  L     + L     +      I S +    +L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSG 203
             N+L                  +   SL  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 6e-05
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 87  CHNYFVCNLANFYLNNNSL----FNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLG---- 138
                   L   +L +  +     +S+   L   +SL  +DLS N    +  L L     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 139 -NLSNLDKLYLYSNSFSGSIPSIIGNLK 165
                L++L LY   +S  +   +  L+
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 25/99 (25%)

Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411
             L+VL L+  ++       L      N                      L+ LDLS N 
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANH--------------------SLRELDLSNNC 408

Query: 412 LKSSIPKSIGNLLR-----LCYLDLSNNQFGHKILVELE 445
           L  +    +   +R     L  L L +  +  ++   L+
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 139 NLSNLDKLYLYSNSFSG----SIPSIIGNLKSLLQLDLSENQLIGSIPLSFG-----NLS 189
             S L  L+L     S     S+ + +    SL +LDLS N L  +  L           
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 190 SLTLMSLFNNSLSGSLPPILGNLK 213
            L  + L++   S  +   L  L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 9/105 (8%)

Query: 87  CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSG----SIPLSLGNLSN 142
                   ++N  L +  +      +    + L  + L+    S     S+  +L    +
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 143 LDKLYLYSNSFSGSIPSIIG-----NLKSLLQLDLSENQLIGSIP 182
           L +L L +N    +    +          L QL L +      + 
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 6e-04
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 326 NVPKLGTFIISVNNIS----ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLF----- 376
               L    ++  ++S     S+   +  +  L+ LDLS+N +     +QL +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 377 SLNKLILNLNQLSGGMPLELGSLIE 401
            L +L+L     S  M   L +L +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 211 NLKSLSALGLHINQLSGV-IPSSIGNLSSLRALYLYNNGL----YSFVPEEIRYLTSLSE 265
           +++SL    +   +LS       +  L   + + L + GL       +   +R   +L+E
Sbjct: 3   DIQSLD---IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 266 LELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG 299
           L L +N L  V  H +          + +  L  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 166 SLLQLDLSENQLIGS-IPLSFGNLSSLTLMSLFNNSLSG----SLPPILGNLKSLSALGL 220
            +  LD+   +L  +        L    ++ L +  L+      +   L    +L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 221 HINQLSGVIPSSIG-----NLSSLRALYLYNNG 248
             N+L  V    +          ++ L L N  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 27/217 (12%), Positives = 57/217 (26%), Gaps = 17/217 (7%)

Query: 6   FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
             + + L      L  I         +L+ +++  N +  VI  ++              
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 66  QLHGSIPLEIGQLSLINVLALCHNYFV--------------CNLANFYLNNNSLFNSIPL 111
             +          +L N+  L  +                   L +   N N        
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171
            +G       + L++N        +       +     +N+       +       + LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 172 LSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPI 208
           +S  ++         NL  L   S +N      LP +
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 31/225 (13%), Positives = 60/225 (26%), Gaps = 12/225 (5%)

Query: 23  IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
           IP  +    N   L     +L  +          L  +    N +   I  ++       
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF------ 74

Query: 83  VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN 142
                +   +  +     NN    N              +  +  +    +         
Sbjct: 75  ----SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130

Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
           L  +    N  +    S +G     + L L++N +      +F       L    NN+L 
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190

Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
                +         L +   ++  +    + NL  LRA   YN 
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE 50
            F      V L++S   +  +    + NL  L+        L  +  LE
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 31/234 (13%), Positives = 66/234 (28%), Gaps = 9/234 (3%)

Query: 93  CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
           C+   F    + +   IP  L    +   +     +       +     +L+K+ +  N 
Sbjct: 8   CSNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
               I + + +    L     E              +   L  L  ++      P +  +
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRA----LYLYNNGLYSFVPEEIRYLTSLSELEL 268
            SL  + L I     +      +   L      L+L  NG+                   
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
             N+L  +        +G ++L++    +        +NL  +     +  NL 
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 32/216 (14%), Positives = 58/216 (26%), Gaps = 11/216 (5%)

Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIG------ 282
           IPS +    +   L      L             L ++E+  N +  VI   +       
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 283 ---NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNN 339
               +     L          +P     L S   +    +          L     ++N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399
            +      +G S +  +L L+ N I                 + + N L           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
                LD+S  ++ S     + NL +L      N +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 39/305 (12%), Positives = 91/305 (29%), Gaps = 12/305 (3%)

Query: 145 KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL-------IGSIPLSFGNLSSLTLMSLF 197
           KL   +     S+ +++    S+ ++ LS N +       +     S  +L       +F
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI 257
              +   +P  L  L         ++ +     +           +L  +     +    
Sbjct: 71  TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 130

Query: 258 RYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLN 317
             L   +  ++        +     N   L  +    N L     K +       R+L  
Sbjct: 131 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 190

Query: 318 QNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS 377
              +   +    +   ++      + +            L  S+  I  +    L +L  
Sbjct: 191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250

Query: 378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI-----GNLLRLCYLDLS 432
            + L+      +          I LQ L L  N+++    +++       +  L +L+L+
Sbjct: 251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 310

Query: 433 NNQFG 437
            N+F 
Sbjct: 311 GNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 42/313 (13%), Positives = 85/313 (27%), Gaps = 14/313 (4%)

Query: 108 SIPLVLGNLNSLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNS---FSGSIPSI 160
           S+  VL   +S+  + LS N         +  ++ +  +L+               IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 161 IGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220
           +  L   L      + +  S            +  L  ++    L      L   +   +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 221 HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHS 280
                   +     N   LR++    N L +   +E         L      +   I   
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 281 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNI 340
                 L  L  C+      +  +         + +   +      +      + +    
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL-----GKLFSLNKLILNLNQLS--GGMP 393
           +        ++  LQ L L  N I  +    L      K+  L  L LN N+ S    + 
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

Query: 394 LELGSLIELQYLD 406
            E+  +   +   
Sbjct: 322 DEIREVFSTRGRG 334

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 32/200 (16%), Positives = 76/200 (38%), Gaps = 10/200 (5%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F+  +F   +  NL    +   +      L+++  +   ++ +  V  ++  +L  +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 73

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
           + + N+L    P  +  L  +  L L  N      +   L      +     + ++N L 
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSII--GNLKSLLQLDLSENQLI 178
            +   ++ + G+  ++   + +        +     I  I+    L  L  L LS+N  I
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-I 190

Query: 179 GSIPLSFGNLSSLTLMSLFN 198
             +  +   L +L ++ LF+
Sbjct: 191 SDLR-ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 31/199 (15%), Positives = 66/199 (33%), Gaps = 11/199 (5%)

Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
             +      L    +   V +    L S+ ++    + +  V    I  L  +  L +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKL 354
           N L+   P +         +  N+      +   K    +   +N    I   +      
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
            +   ++      +  +L KL +L+     ++ +       L  L +LQ L LS N +  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLSKNHISD 192

Query: 415 SIPKSIGNLLRLCYLDLSN 433
              +++  L  L  L+L +
Sbjct: 193 --LRALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 6/192 (3%)

Query: 1   FAFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRIL 60
           F  ++    +   L    +   +     +L  +  L      +  +  +E  +LN L  +
Sbjct: 12  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI 67

Query: 61  YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLS 120
            F  NQL    PL+     +  ++       +  LAN          +  +   +     
Sbjct: 68  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127

Query: 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS 180
           T        S +I              L  +S   +    + NL +L +LD+S N++  S
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV--S 185

Query: 181 IPLSFGNLSSLT 192
                  L++L 
Sbjct: 186 DISVLAKLTNLE 197

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 30/184 (16%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPP------QIGNLSNLQYLDLGSNQLSGVIPLEIGHLN 55
            F     +V        L G+IPP       +  L   ++L L +N +  +  L    + 
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL--SGME 70

Query: 56  QLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLG- 114
            LRIL    N +     L+    +L  +    +     +     +N   L+ S   +   
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 115 -------NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
                   L+ L  + L+ N                      +N+ S     ++  L +L
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKE--------------NNATSEYRIEVVKRLPNL 176

Query: 168 LQLD 171
            +LD
Sbjct: 177 KKLD 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI-GNLSSLRALYLYNNG 248
             T +      L   +P  +      + L L+ N+L  +    + G L  L  L L  N 
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL 308
           L    P      + + EL+L  N +  +       L  L  LN+ +N +S  +P SF++L
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 309 TSVERVLLNQNNLSGKVNVPKL----GTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
            S+  + L  N  +   ++           ++        P ++ D   +Q+ DL  + 
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 2/147 (1%)

Query: 94  NLANFYLNNNSLFNSIPLVL-GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
           +     LN+N L       L G L  L  ++L +NQ +G  P +    S++ +L L  N 
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
                  +   L  L  L+L +NQ+   +P SF +L+SLT ++L +N  +     +    
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWFA 148

Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSL 239
           + L    L+        PS + ++   
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRDVQIK 175

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 18/110 (16%)

Query: 20  FGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLS 79
             I       L  L+ L+L  NQ+S V+P    HLN L  L    N  + +  L      
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL------ 144

Query: 80  LINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQF 129
                     +F   L    LN  +     P     +  +   DL  ++F
Sbjct: 145 ---------AWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 2   AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
            F     L  LNL  N +  ++P    +L++L  L+L SN  +    L       LR   
Sbjct: 97  MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKS 155

Query: 62  FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLAN 97
            +        P ++  + + +   L H+ F C+  N
Sbjct: 156 LNGGAARCGAPSKVRDVQIKD---LPHSEFKCSSEN 188

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402
           ++   +     +  LDLS N +    P  L  L  L   +L  +  +      + +L  L
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALENVDGVANLPRL 67

Query: 403 QYLDLSTNKLKS-SIPKSIGNLLRLCYLDLSNNQF 436
           Q L L  N+L+  +  + + +  RL  L+L  N  
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.4e-25  Score=203.45  Aligned_cols=343  Identities=25%  Similarity=0.339  Sum_probs=181.2

Q ss_pred             CCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCC
Q 039967           28 GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN  107 (445)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~  107 (445)
                      ..+.+|+.|+++++.|++.  +.+..+++|++|++++|.+++. + .++++++|+.++++              +|.+..
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~--------------~n~i~~  102 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMN--------------NNQIAD  102 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECC--------------SSCCCC
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccc--------------cccccc
Confidence            3456788888888887743  3567778888888888877632 2 24455533333333              333332


Q ss_pred             CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC
Q 039967          108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN  187 (445)
Q Consensus       108 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  187 (445)
                       ++ .++++++|+.+++.++.++...  .......+.......+.+......................     ....+..
T Consensus       103 -i~-~l~~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  173 (384)
T d2omza2         103 -IT-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLAN  173 (384)
T ss_dssp             -CG-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTT
T ss_pred             -cc-cccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc-----hhhhhcc
Confidence             22 2566666777777666655322  2233344444444444433111111111111111111110     1111222


Q ss_pred             CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEe
Q 039967          188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE  267 (445)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  267 (445)
                      .+.........+...  .......+++++.++++.+.+....  ....+++|+++++++|.+...  ..+..+++|+.++
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  247 (384)
T d2omza2         174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD  247 (384)
T ss_dssp             CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ccccccccccccccc--cccccccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCCCc--chhhcccccchhc
Confidence            233333333332221  1223344455555555554443221  123334455555555444332  1233444455555


Q ss_pred             cccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcc
Q 039967          268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPE  347 (445)
Q Consensus       268 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  347 (445)
                      +.+|.+....  .+..+++|++++++++.+.+..  .+..                   ++.++.+....+.+.+  ...
T Consensus       248 l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~-------------------~~~l~~l~~~~n~l~~--~~~  302 (384)
T d2omza2         248 LANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAG-------------------LTALTNLELNENQLED--ISP  302 (384)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTT-------------------CTTCSEEECCSSCCSC--CGG
T ss_pred             cccCccCCCC--cccccccCCEeeccCcccCCCC--cccc-------------------cccccccccccccccc--ccc
Confidence            5544443221  2334444444544444443211  1233                   3445555555555543  234


Q ss_pred             ccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCcc
Q 039967          348 IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC  427 (445)
Q Consensus       348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  427 (445)
                      +..++++++|++++|.+.+..  .+..+++|++|++++|+++ .++ .+.++++|++|++++|++++..+  +.++++|+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            677788999999999987543  3778999999999999887 334 57889999999999999886543  88899999


Q ss_pred             EEeCCCC
Q 039967          428 YLDLSNN  434 (445)
Q Consensus       428 ~l~l~~~  434 (445)
                      +|++++|
T Consensus       377 ~L~L~~N  383 (384)
T d2omza2         377 QLGLNDQ  383 (384)
T ss_dssp             EEECCCE
T ss_pred             EeeCCCC
Confidence            9999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=8.8e-23  Score=188.44  Aligned_cols=173  Identities=28%  Similarity=0.370  Sum_probs=117.4

Q ss_pred             hcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc---ccCCCcceE
Q 039967          257 IRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK---VNVPKLGTF  333 (445)
Q Consensus       257 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~L~~L  333 (445)
                      ...+++++.++++++.+....+  ....++|+.+++++|.+.+ . ..+..++.|+.+++.+|.+.+.   ..+++|+.+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  268 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL  268 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCcccccccCCEe
Confidence            3444555555555555443221  3334555555555555542 1 2344555556666555554432   225566666


Q ss_pred             EcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       334 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      ++.++++...  ..+..++.++.+++.+|.+.+.  ..+..+++++.|++++|++.+. + .+..+++|++|++++|+++
T Consensus       269 ~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         269 KLGANQISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC
T ss_pred             eccCcccCCC--Cccccccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC
Confidence            6666666532  2466789999999999998743  3578899999999999999854 3 4778999999999999997


Q ss_pred             cccCccccCCCCccEEeCCCCcccccCC
Q 039967          414 SSIPKSIGNLLRLCYLDLSNNQFGHKIL  441 (445)
Q Consensus       414 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~  441 (445)
                      ..  ..+.++++|++|++++|++++-.|
T Consensus       343 ~l--~~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         343 DV--SSLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CC--GGGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CC--hhHcCCCCCCEEECCCCcCCCChh
Confidence            43  368999999999999999986544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.4e-24  Score=194.45  Aligned_cols=249  Identities=29%  Similarity=0.443  Sum_probs=115.7

Q ss_pred             CCceEEeccCcccc--ccCccccCCCCcCEEeCCC-ccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEE
Q 039967          142 NLDKLYLYSNSFSG--SIPSIIGNLKSLLQLDLSE-NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL  218 (445)
Q Consensus       142 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  218 (445)
                      ++..|++.++.+..  .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+....+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            34455555554432  2344455555555555543 33443444445555555555555554444344444444444444


Q ss_pred             EccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCccc
Q 039967          219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS  298 (445)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  298 (445)
                      +++.|......+..+..++.++.+++++|.+....+..+..+..+                       ++.+++++|++.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-----------------------~~~l~~~~n~l~  187 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-----------------------FTSMTISRNRLT  187 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-----------------------CCEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccc-----------------------cccccccccccc
Confidence            444444433333344444444444444444333333333222222                       134444444444


Q ss_pred             CCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCC
Q 039967          299 GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSL  378 (445)
Q Consensus       299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  378 (445)
                      +..+..+..+..+ .+++.                   .+...+..+..+..+++++.+++++|.+.+..+ .+..+++|
T Consensus       188 ~~~~~~~~~l~~~-~l~l~-------------------~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L  246 (313)
T d1ogqa_         188 GKIPPTFANLNLA-FVDLS-------------------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL  246 (313)
T ss_dssp             EECCGGGGGCCCS-EEECC-------------------SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTC
T ss_pred             ccccccccccccc-ccccc-------------------ccccccccccccccccccccccccccccccccc-cccccccc
Confidence            3333333222111 22222                   222223344444455555566665555543332 34555566


Q ss_pred             CEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCc
Q 039967          379 NKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ  435 (445)
Q Consensus       379 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  435 (445)
                      +.|++++|++.+.+|..++++++|++|+|++|++++..| .+.++.+|+.+++.+|+
T Consensus       247 ~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             ccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            666666666655555555556666666666666554444 23455556666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.6e-24  Score=194.23  Aligned_cols=250  Identities=30%  Similarity=0.470  Sum_probs=196.7

Q ss_pred             CCcEEEccCCcccC--CCCccccCCCCCceEEecc-CccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEE
Q 039967          118 SLSTMDLSQNQFSG--SIPLSLGNLSNLDKLYLYS-NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLM  194 (445)
Q Consensus       118 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  194 (445)
                      .++.|+++++.+..  .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+....+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            68999999998875  3678999999999999986 67877789999999999999999999988788888999999999


Q ss_pred             EccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcc-cEEEeeCccccccChhhhcccccccEEecccCcc
Q 039967          195 SLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL-RALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL  273 (445)
Q Consensus       195 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  273 (445)
                      ++..|.+....|..+..++.++.++++++.+....+..+..+..+ +.+.+++|.+....+..+..+.. ..+++     
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l-----  204 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDL-----  204 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEEC-----
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccc-----
Confidence            999999988889999999999999999999876777777776665 78888888777655544443322 23444     


Q ss_pred             CCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCC
Q 039967          274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPK  353 (445)
Q Consensus       274 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  353 (445)
                                         .++...+..+..+..++.++.+.+.++.+.                    ..+..+..+++
T Consensus       205 -------------------~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~--------------------~~~~~~~~~~~  245 (313)
T d1ogqa_         205 -------------------SRNMLEGDASVLFGSDKNTQKIHLAKNSLA--------------------FDLGKVGLSKN  245 (313)
T ss_dssp             -------------------CSSEEEECCGGGCCTTSCCSEEECCSSEEC--------------------CBGGGCCCCTT
T ss_pred             -------------------cccccccccccccccccccccccccccccc--------------------ccccccccccc
Confidence                               444444344444445555555555554432                    12224556788


Q ss_pred             CcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       354 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      |+.|++++|.+++..|..+.++++|++|+|++|++.+.+| .++.+++|+.+++++|+..
T Consensus       246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEE
T ss_pred             cccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccc
Confidence            9999999999988889899999999999999999987777 4577889999999999854

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.2e-23  Score=184.11  Aligned_cols=271  Identities=22%  Similarity=0.225  Sum_probs=186.7

Q ss_pred             CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEcc
Q 039967          142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH  221 (445)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  221 (445)
                      ..+.++..+..++ .+|..+.  +.+++|++++|.+....+..|..+++|++|++.++.+....+..+..++.|++++++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4455555655565 5565553  578888888888775444567778888888888888776666677778888888888


Q ss_pred             CccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCC--CccccccccCCccEEEcCCCcccC
Q 039967          222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSG--VIPHSIGNLTGLLLLNMCENHLSG  299 (445)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~  299 (445)
                      +|.+.... ..  ....++.++...+.+.......+.....+..+....+....  .....+..+++|+.+++++|.+..
T Consensus        88 ~n~l~~l~-~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          88 KNQLKELP-EK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SSCCSBCC-SS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCccCcCc-cc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            87766332 22  23466777777777766555555556666666665553321  122344555566666666665542


Q ss_pred             CCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCC
Q 039967          300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN  379 (445)
Q Consensus       300 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  379 (445)
                       ++..                     .+++++.|++.++......+..+..++.+++|++++|.+.+..+..+.++++|+
T Consensus       165 -l~~~---------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         165 -IPQG---------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             -CCSS---------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             -cCcc---------------------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccce
Confidence             2221                     134455555555555556667788889999999999999877788888999999


Q ss_pred             EEEccCCeeecccchhhcCCccCceeecCCCccccccCccc------cCCCCccEEeCCCCccc-ccCC
Q 039967          380 KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI------GNLLRLCYLDLSNNQFG-HKIL  441 (445)
Q Consensus       380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~l~l~~~~~~-~~~~  441 (445)
                      +|++++|++. .+|..+..+++|++|++++|+++......|      ...++|+.+++.+|+|. .++|
T Consensus       223 ~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         223 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             eeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence            9999999887 667788899999999999999886554444      45778999999999986 3443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.2e-22  Score=181.08  Aligned_cols=259  Identities=22%  Similarity=0.242  Sum_probs=136.4

Q ss_pred             CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEcc
Q 039967          142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH  221 (445)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  221 (445)
                      ++++|++++|.++...+..|.++++|++|++++|.+....|..|..+++|++|++.+|.+.. .+..  ..+.+..+...
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhcc
Confidence            44444444444442222234444444444444444443333344444444444444444432 2221  11344444444


Q ss_pred             CccccCCCCccccCCCcccEEEeeCcccc--ccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccC
Q 039967          222 INQLSGVIPSSIGNLSSLRALYLYNNGLY--SFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG  299 (445)
Q Consensus       222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  299 (445)
                      .+.+.......+.....+..+....+...  ......+..+++|+.+++.+|.+.... .  ..+++++.|++++|....
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~--~~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-Q--GLPPSLTELHLDGNKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-S--SCCTTCSEEECTTSCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC-c--ccCCccCEEECCCCcCCC
Confidence            44443333333334444455554443221  122334555666777777766655322 1  124677777777777665


Q ss_pred             CCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCC
Q 039967          300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN  379 (445)
Q Consensus       300 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  379 (445)
                      ..+..+..++.++.|++++|.+.                   ...+.++..+++|++|++++|.++ .+|.++..+++|+
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~-------------------~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSIS-------------------AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCC-------------------EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             CChhHhhcccccccccccccccc-------------------ccccccccccccceeeeccccccc-ccccccccccCCC
Confidence            66666666677777666665543                   233445666777777777777776 4466777777777


Q ss_pred             EEEccCCeeecccchh------hcCCccCceeecCCCccc--cccCccccCCCCc
Q 039967          380 KLILNLNQLSGGMPLE------LGSLIELQYLDLSTNKLK--SSIPKSIGNLLRL  426 (445)
Q Consensus       380 ~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L  426 (445)
                      .|++++|++.......      ...+++|+.|+|++|++.  ...|.+|..+...
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence            7777777766332222      234567888888888764  2334455444333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.2e-22  Score=174.38  Aligned_cols=205  Identities=27%  Similarity=0.313  Sum_probs=92.8

Q ss_pred             CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc-CCccCCCCCccccCCCCcCEEEc
Q 039967          142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF-NNSLSGSLPPILGNLKSLSALGL  220 (445)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L~l  220 (445)
                      ++++|++++|.++...+..|.++++|++|+++++.+....+..+..++.++.+... .+.+....+..+.++++|+++++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            44555555555543333445555555555555555444444444444444444432 22233333334444444555554


Q ss_pred             cCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCC
Q 039967          221 HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP  300 (445)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  300 (445)
                      +.+.+.......+...++|+.+++.+|.+....+..+..+                        ++|+.|++++|.+...
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~------------------------~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL------------------------GNLTHLFLHGNRISSV  168 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------------------------TTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccc------------------------cchhhcccccCccccc
Confidence            4444433333333334444444444444444333333333                        4444444444444333


Q ss_pred             CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCE
Q 039967          301 IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNK  380 (445)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  380 (445)
                      .+.+|.++++|+.+.+.+|++.                   +..+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~-------------------~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVA-------------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-------------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             chhhhccccccchhhhhhcccc-------------------ccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            3334444444444444443322                   222334444455555555555555444455555555555


Q ss_pred             EEccCCeee
Q 039967          381 LILNLNQLS  389 (445)
Q Consensus       381 L~l~~~~~~  389 (445)
                      |++++|++.
T Consensus       230 L~l~~N~l~  238 (284)
T d1ozna_         230 LRLNDNPWV  238 (284)
T ss_dssp             EECCSSCEE
T ss_pred             EEecCCCCC
Confidence            555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.1e-22  Score=173.66  Aligned_cols=205  Identities=25%  Similarity=0.254  Sum_probs=148.6

Q ss_pred             CCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeC-ccccccChhhhcccccccEEec
Q 039967          190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN-NGLYSFVPEEIRYLTSLSELEL  268 (445)
Q Consensus       190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l  268 (445)
                      .+++|++++|.++...+..+..+++|++++++++.+.......+...+.++.+.... +.+....+..+..+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            344444444444433333444555555555555554444444444555555555432 3344444556667777777788


Q ss_pred             ccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccc
Q 039967          269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI  348 (445)
Q Consensus       269 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  348 (445)
                      ++|.+.......+...++|+.+++++|.+.+..+..|..+++|+.|++++|.+.                   ...+..+
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-------------------~l~~~~f  173 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-------------------SVPERAF  173 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------EECTTTT
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-------------------ccchhhh
Confidence            777776555566777788899999999888666778888888888888887654                   3455678


Q ss_pred             cCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967          349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK  413 (445)
Q Consensus       349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  413 (445)
                      ..+++|+++++++|.+++..|..|.++++|++|++++|.+.+..+..++.+++|++|++++|++.
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            88999999999999999888999999999999999999999777788999999999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-19  Score=157.21  Aligned_cols=177  Identities=27%  Similarity=0.216  Sum_probs=81.9

Q ss_pred             cccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeecc
Q 039967          238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLN  317 (445)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  317 (445)
                      ++++|++++|.+....+..+..+++|++|++++|.+....  .++.+++|++|++++|++. ..+..+..+++|+.++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccc-cccccccccccccccccc
Confidence            3444444444444433344444445555555554443211  2234455555555555554 233344444455555444


Q ss_pred             CccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhc
Q 039967          318 QNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  397 (445)
                      ++.+.                   ......+..+.++++|++++|.+....+..+..++.++.+++++|++.+..+..+.
T Consensus       109 ~~~~~-------------------~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~  169 (266)
T d1p9ag_         109 FNRLT-------------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (266)
T ss_dssp             SSCCC-------------------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             ccccc-------------------eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccc
Confidence            44332                   22223333444455555555554433444444445555555555555433334444


Q ss_pred             CCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          398 SLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       398 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      .+++|++|+|++|+++ ..|..+..+++|+.|++++|+|.
T Consensus       170 ~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            4555555555555544 34444444555555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-19  Score=155.41  Aligned_cols=197  Identities=25%  Similarity=0.313  Sum_probs=110.3

Q ss_pred             CcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccC
Q 039967          119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFN  198 (445)
Q Consensus       119 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  198 (445)
                      +..++.+++.++ .+|..+.  +++++|++++|.+....+..|.++++|++|++++|.+.. ++ .+..+++|++|++++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence            334455555544 2333332  345555555555543333445555555555555555442 22 234455555555555


Q ss_pred             CccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCcc
Q 039967          199 NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP  278 (445)
Q Consensus       199 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  278 (445)
                      |.+. ..+..+..++.|+.++++++.+.......+..+.+++.+++.+|.+....+..+..++.++.+++++|.+....+
T Consensus        87 N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             cccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence            5554 233445555566666666555554444455555666666666666655555555566666666666666665555


Q ss_pred             ccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccc
Q 039967          279 HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS  322 (445)
Q Consensus       279 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  322 (445)
                      ..+..+++|++|++++|++. .+|..+..+++|+.|.+++|.+.
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            55666667777777777666 55555556666777777776655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=4.8e-15  Score=134.12  Aligned_cols=253  Identities=29%  Similarity=0.319  Sum_probs=119.7

Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      .|++|++++|.+. ..| .+..+++|+.+++.++.+. ..+.   ....+..+.+..+...  ....+..++.++.+.+.
T Consensus        99 ~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~-~~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred             ccccccccccccc-ccc-chhhhccceeecccccccc-cccc---ccccccchhhcccccc--ccccccccccceecccc
Confidence            4777777777766 334 3456677777777766654 2222   2345555555554432  22335556666666666


Q ss_pred             CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCc
Q 039967          198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI  277 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  277 (445)
                      .+..... +.   .....+.+......+. . ...+..++.|+.++++++..... +   ....++..+.+..+.+....
T Consensus       171 ~n~~~~~-~~---~~~~~~~l~~~~~~~~-~-~~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~~  240 (353)
T d1jl5a_         171 NNSLKKL-PD---LPLSLESIVAGNNILE-E-LPELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLP  240 (353)
T ss_dssp             SSCCSSC-CC---CCTTCCEEECCSSCCS-S-CCCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCC
T ss_pred             ccccccc-cc---cccccccccccccccc-c-ccccccccccccccccccccccc-c---cccccccccccccccccccc
Confidence            6655421 11   1122233333333322 1 11234455566666655543331 1   12234444444444333111


Q ss_pred             cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccC-CCcceEEcccCccccCCCccccCCCCCcE
Q 039967          278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNV-PKLGTFIISVNNISESIPPEIGDSPKLQV  356 (445)
Q Consensus       278 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  356 (445)
                          .....+...++..+...                        ..... ..........+.+.    .....+++|++
T Consensus       241 ----~~~~~l~~~~~~~~~~~------------------------~l~~l~~~~~~~~~~~~~~~----~~~~~~~~L~~  288 (353)
T d1jl5a_         241 ----ELPQSLTFLDVSENIFS------------------------GLSELPPNLYYLNASSNEIR----SLCDLPPSLEE  288 (353)
T ss_dssp             ----CCCTTCCEEECCSSCCS------------------------EESCCCTTCCEEECCSSCCS----EECCCCTTCCE
T ss_pred             ----ccccccccccccccccc------------------------ccccccchhcccccccCccc----cccccCCCCCE
Confidence                11223333333332221                        11111 11112222222222    11233567777


Q ss_pred             EECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967          357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS  432 (445)
Q Consensus       357 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  432 (445)
                      |++++|.+. .+|.   .+++|+.|++++|++. .+|.   .+++|+.|++++|++. ..|...   .+|+.|.+.
T Consensus       289 L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         289 LNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             EECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence            777777776 3442   2467777777777776 4443   2357777777777765 333322   245555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=7.3e-15  Score=132.92  Aligned_cols=314  Identities=25%  Similarity=0.248  Sum_probs=194.5

Q ss_pred             CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967            7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL   86 (445)
Q Consensus         7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   86 (445)
                      .++++|+++++.++.++ +   ..++|++|++++|.++ ..|..   ..+|+.|+++++.++. ++    .++       
T Consensus        38 ~~l~~LdLs~~~L~~lp-~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~----~lp-------   97 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP-E---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LS----DLP-------   97 (353)
T ss_dssp             HTCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC----SCC-------
T ss_pred             cCCCEEEeCCCCCCCCC-C---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hh----hhc-------
Confidence            36889999999888763 3   2568999999999988 45544   3589999999887762 21    222       


Q ss_pred             cCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCC
Q 039967           87 CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS  166 (445)
Q Consensus        87 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  166 (445)
                            +.|++|++++|.+. .+|. ++.+++|+++++.++.+.. .+.   ....+..+.+..+...  ....+..++.
T Consensus        98 ------~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~  163 (353)
T d1jl5a_          98 ------PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPF  163 (353)
T ss_dssp             ------TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTT
T ss_pred             ------cccccccccccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--cccccccccc
Confidence                  36777788887766 4454 6789999999999988863 222   3456667777665543  3455777899


Q ss_pred             cCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeC
Q 039967          167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN  246 (445)
Q Consensus       167 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  246 (445)
                      ++.+.+.++.... .+.   .....+.+......+. ..+ .+..++.++.++++++.....    .....++..+.+..
T Consensus       164 l~~L~l~~n~~~~-~~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~  233 (353)
T d1jl5a_         164 LTAIYADNNSLKK-LPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRD  233 (353)
T ss_dssp             CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCS
T ss_pred             ceecccccccccc-ccc---cccccccccccccccc-ccc-ccccccccccccccccccccc----cccccccccccccc
Confidence            9999999887653 222   2234456666655554 333 356788999999998876522    22345677888887


Q ss_pred             ccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc
Q 039967          247 NGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN  326 (445)
Q Consensus       247 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  326 (445)
                      +.+....    ...+.+...++..+......    .........++..+.+.+    ....+++|++|++++|++.    
T Consensus       234 ~~~~~~~----~~~~~l~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~----  297 (353)
T d1jl5a_         234 NYLTDLP----ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI----  297 (353)
T ss_dssp             SCCSCCC----CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS----
T ss_pred             ccccccc----cccccccccccccccccccc----cccchhcccccccCcccc----ccccCCCCCEEECCCCccC----
Confidence            7665421    12345566665554433110    111334455555554432    1233456666666666543    


Q ss_pred             CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceee
Q 039967          327 VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD  406 (445)
Q Consensus       327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  406 (445)
                                      ..+.   .+++|+.|++++|.++ .+|..   +++|++|++++|++. .+|..   ..+|+.|.
T Consensus       298 ----------------~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~  350 (353)
T d1jl5a_         298 ----------------ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI---PESVEDLR  350 (353)
T ss_dssp             ----------------CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEE
T ss_pred             ----------------cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc---ccccCeeE
Confidence                            2222   2466777777777776 33422   456777777777765 45532   23566655


Q ss_pred             c
Q 039967          407 L  407 (445)
Q Consensus       407 l  407 (445)
                      +
T Consensus       351 ~  351 (353)
T d1jl5a_         351 M  351 (353)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-19  Score=168.88  Aligned_cols=372  Identities=20%  Similarity=0.165  Sum_probs=223.5

Q ss_pred             CCCcEEEecCcccccC-CCcccccCCCccEEEecCcccccccceEEecCCcCCC----CccccccCCCCCcEEEccCCcc
Q 039967           55 NQLRILYFDVNQLHGS-IPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN----SIPLVLGNLNSLSTMDLSQNQF  129 (445)
Q Consensus        55 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~  129 (445)
                      .+|+.||++++.+++. +...+..+++++++++.+              |.++.    .+...+..+++|++||+++|.+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~--------------~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD--------------CGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEES--------------SCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCC--------------CCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            3688999998888742 133345566555555544              44332    2334567788889999988887


Q ss_pred             cCCC----Ccccc-CCCCCceEEeccCccccc----cCccccCCCCcCEEeCCCccccccccccc----c-CCCCCcEEE
Q 039967          130 SGSI----PLSLG-NLSNLDKLYLYSNSFSGS----IPSIIGNLKSLLQLDLSENQLIGSIPLSF----G-NLSSLTLMS  195 (445)
Q Consensus       130 ~~~~----~~~~~-~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~-~l~~L~~L~  195 (445)
                      ++..    ...+. ...+|++|++++|.++..    ++..+..+++|++|++++|.+.......+    . .........
T Consensus        68 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~  147 (460)
T d1z7xw1          68 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ  147 (460)
T ss_dssp             HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccc
Confidence            6321    11222 234788888888887532    34456678888999988887653222111    1 112233333


Q ss_pred             ccCCccCCCC----CccccCCCCcCEEEccCccccCCCC----ccc-cCCCcccEEEeeCcccccc----Chhhhccccc
Q 039967          196 LFNNSLSGSL----PPILGNLKSLSALGLHINQLSGVIP----SSI-GNLSSLRALYLYNNGLYSF----VPEEIRYLTS  262 (445)
Q Consensus       196 l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~----~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~  262 (445)
                      ..........    ...+...+.++.+.++.+.......    ..+ ........+.+..+.....    ....+...+.
T Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  227 (460)
T d1z7xw1         148 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS  227 (460)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            3332221100    0112334667777777665432110    011 1223455666666554332    1123345567


Q ss_pred             ccEEecccCccCCC-----ccccccccCCccEEEcCCCcccCC----CCccccccCccceeeccCccccccc--------
Q 039967          263 LSELELCTNHLSGV-----IPHSIGNLTGLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKV--------  325 (445)
Q Consensus       263 L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~--------  325 (445)
                      ++.+.+.++.....     ..........++.+++++|.+...    ....+...+.++.+++++|.+.+..        
T Consensus       228 ~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l  307 (460)
T d1z7xw1         228 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL  307 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred             ccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence            78888887765321     112234456788888888876533    1223456778888888888775321        


Q ss_pred             --cCCCcceEEcccCccccCCCc----cccCCCCCcEEECCCCccccccc----hhhc-cccCCCEEEccCCeeecc---
Q 039967          326 --NVPKLGTFIISVNNISESIPP----EIGDSPKLQVLDLSSNNIVGEIP----VQLG-KLFSLNKLILNLNQLSGG---  391 (445)
Q Consensus       326 --~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~~~~~~~~---  391 (445)
                        ....|+.+++.++.++.....    .+..+++|++|++++|.+.+...    ..+. ..+.|++|++++|++++.   
T Consensus       308 ~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~  387 (460)
T d1z7xw1         308 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS  387 (460)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             cccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHH
Confidence              245788888888887654323    23456789999999999875433    2333 467799999999998642   


Q ss_pred             -cchhhcCCccCceeecCCCccccccCccc----c-CCCCccEEeCCCCcccccC
Q 039967          392 -MPLELGSLIELQYLDLSTNKLKSSIPKSI----G-NLLRLCYLDLSNNQFGHKI  440 (445)
Q Consensus       392 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~l~l~~~~~~~~~  440 (445)
                       +...+..+++|++|+|++|+++..+...+    . +...|+.+++.+|.++...
T Consensus       388 ~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         388 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence             33446667899999999999876554433    2 3447999999999988543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1e-16  Score=135.51  Aligned_cols=188  Identities=22%  Similarity=0.351  Sum_probs=120.5

Q ss_pred             cCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccE
Q 039967          210 GNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL  289 (445)
Q Consensus       210 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  289 (445)
                      ..+.+|+.+++.++.+...  ..+..+++|+++++++|.+....  .+..+++++++++.+|.+...  ..+..++.|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccc
Confidence            4456677777777766532  24566677777777777665532  255666677777766655422  23555666666


Q ss_pred             EEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccc
Q 039967          290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP  369 (445)
Q Consensus       290 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  369 (445)
                      ++++++...+.  ..+...+.++.+.+.++                   .+..  ...+..+++|++|++++|.+.+.. 
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~~~--~~~~~~~~~L~~L~l~~n~~~~~~-  167 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLN-------------------QITN--ISPLAGLTNLQYLSIGNAQVSDLT-  167 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSS-------------------CCCC--CGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             ccccccccccc--chhccccchhhhhchhh-------------------hhch--hhhhccccccccccccccccccch-
Confidence            66666654321  22333444444444443                   3322  234566788888888888876433 


Q ss_pred             hhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967          370 VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS  432 (445)
Q Consensus       370 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  432 (445)
                       .+.++++|+.|++++|++.+ ++ .++++++|+.|++++|++++..  .+.++++|++|+++
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             -hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence             36788888999998888764 33 4778888999999998887543  37788888888875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.2e-16  Score=132.45  Aligned_cols=202  Identities=26%  Similarity=0.296  Sum_probs=135.9

Q ss_pred             EeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCccc
Q 039967           12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYF   91 (445)
Q Consensus        12 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~   91 (445)
                      +++..+.+.+.  .....+.+|+.|++.+|.+++.  ..+.++++|+.|++++|.+.+..  .+.+++.++.+.+.++  
T Consensus        24 ~~l~~~~~~d~--~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n--   95 (227)
T d1h6ua2          24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN--   95 (227)
T ss_dssp             HHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC--
T ss_pred             HHhCCCCcCCc--CCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccc--
Confidence            34444444443  2345567788888888887743  35777888888888888776422  3666665555554443  


Q ss_pred             ccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEe
Q 039967           92 VCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD  171 (445)
Q Consensus        92 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  171 (445)
                                  .+. .+ ..++++++|+.++++++.....  ..+...+.++.+.+.++.+..  ...+.++++|+.|+
T Consensus        96 ------------~~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~  157 (227)
T d1h6ua2          96 ------------PLK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLS  157 (227)
T ss_dssp             ------------CCS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEE
T ss_pred             ------------ccc-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhch--hhhhcccccccccc
Confidence                        322 22 2467788888888888776532  346667788888887776642  23466778888888


Q ss_pred             CCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEee
Q 039967          172 LSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY  245 (445)
Q Consensus       172 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  245 (445)
                      +++|.+...  ..+.++++|+.|++++|.++.. + .+..+++|++|++++|+++...  .++.+++|+.|+++
T Consensus       158 l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         158 IGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            888876532  3367888888888888887643 2 3677888888888888876432  47788888888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.9e-18  Score=161.55  Aligned_cols=346  Identities=18%  Similarity=0.162  Sum_probs=227.1

Q ss_pred             ccceEEecCCcCCCC-ccccccCCCCCcEEEccCCcccCC----CCccccCCCCCceEEeccCccccc----cCcccc-C
Q 039967           94 NLANFYLNNNSLFNS-IPLVLGNLNSLSTMDLSQNQFSGS----IPLSLGNLSNLDKLYLYSNSFSGS----IPSIIG-N  163 (445)
Q Consensus        94 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~-~  163 (445)
                      +|++|+++.++++.. +...+..++++++|++.+|.+++.    +...+..+++|++|++++|.+...    ....+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            678888888887653 234467778999999999988743    234567889999999999987532    222232 2


Q ss_pred             CCCcCEEeCCCcccccc----ccccccCCCCCcEEEccCCccCCCCCccc----c-CCCCcCEEEccCccccCCC----C
Q 039967          164 LKSLLQLDLSENQLIGS----IPLSFGNLSSLTLMSLFNNSLSGSLPPIL----G-NLKSLSALGLHINQLSGVI----P  230 (445)
Q Consensus       164 l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~----~  230 (445)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+    . ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            35799999999987643    34556788999999999998753211111    1 1122333333333222111    1


Q ss_pred             ccccCCCcccEEEeeCccccccC----hhhhc-ccccccEEecccCccCCCcc----ccccccCCccEEEcCCCcccCC-
Q 039967          231 SSIGNLSSLRALYLYNNGLYSFV----PEEIR-YLTSLSELELCTNHLSGVIP----HSIGNLTGLLLLNMCENHLSGP-  300 (445)
Q Consensus       231 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~-  300 (445)
                      ..+.....++.+.++.+......    ...+. .......+.+..+.......    ..+...+.++.+++.++.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            12334567788888877653311    11111 12245667777765543221    2345568899999999876432 


Q ss_pred             ----CCccccccCccceeeccCccccccc---------cCCCcceEEcccCccccCCCcc-----ccCCCCCcEEECCCC
Q 039967          301 ----IPKSFKNLTSVERVLLNQNNLSGKV---------NVPKLGTFIISVNNISESIPPE-----IGDSPKLQVLDLSSN  362 (445)
Q Consensus       301 ----~~~~~~~~~~L~~L~l~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~  362 (445)
                          ..........++.+++++|.+....         ..+.++.+++.++++.......     ......|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                2234455778999999999875332         3778999999998876322111     124468999999999


Q ss_pred             ccccccchh----hccccCCCEEEccCCeeecc----cchhhc-CCccCceeecCCCccccccC----ccccCCCCccEE
Q 039967          363 NIVGEIPVQ----LGKLFSLNKLILNLNQLSGG----MPLELG-SLIELQYLDLSTNKLKSSIP----KSIGNLLRLCYL  429 (445)
Q Consensus       363 ~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l  429 (445)
                      .+.......    +..+++|++|+|++|++.+.    +...+. ..+.|++|++++|+++....    ..+..+++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            987654333    45667999999999998643    223332 45789999999999986543    345678999999


Q ss_pred             eCCCCccccc
Q 039967          430 DLSNNQFGHK  439 (445)
Q Consensus       430 ~l~~~~~~~~  439 (445)
                      ++++|+++++
T Consensus       403 ~Ls~N~i~~~  412 (460)
T d1z7xw1         403 DLSNNCLGDA  412 (460)
T ss_dssp             ECCSSSCCHH
T ss_pred             ECCCCcCCHH
Confidence            9999998753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-15  Score=128.92  Aligned_cols=201  Identities=16%  Similarity=0.177  Sum_probs=123.2

Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc-cCccccCCCCcCEEeCCC-ccccccccccccCCCCCcEE
Q 039967          117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS-IPSIIGNLKSLLQLDLSE-NQLIGSIPLSFGNLSSLTLM  194 (445)
Q Consensus       117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L  194 (445)
                      +++++|++++|.++...+..|.++++|++|++++|.+... .+..|.+++.++.+.+.. +.+....+..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            3567777777777644445677777777777777765432 344566677777776654 34444455566777777777


Q ss_pred             EccCCccCCCCC-ccccCCCCcCEEEccCccccCCCCccccCCC-cccEEEeeCccccccChhhhcccccccEE-ecccC
Q 039967          195 SLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLS-SLRALYLYNNGLYSFVPEEIRYLTSLSEL-ELCTN  271 (445)
Q Consensus       195 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~  271 (445)
                      .+.++.+....+ ..+..++.+......++.+.......+.+++ .++.+++.++.+.......+. ..++..+ .+.++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhcccccccc
Confidence            777776653222 1223344444444455555444444555443 677788887777665444443 3444444 45666


Q ss_pred             ccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccC
Q 039967          272 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQ  318 (445)
Q Consensus       272 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (445)
                      .+.......+..+++|++|++++|++....+..|..++.|+.+++..
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            67655556677888888888888888755555677777777665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-15  Score=129.25  Aligned_cols=216  Identities=14%  Similarity=0.047  Sum_probs=122.3

Q ss_pred             cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCC-CcccccCCCccEEEecC
Q 039967           10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI-PLEIGQLSLINVLALCH   88 (445)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~   88 (445)
                      ++++.++..++.++...+   +++++|++++|.+....+.+|.++++|++|++++|.+.... +..+.+++.++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            678888877776644332   47899999999988667778889999999999998876433 34456666555554432


Q ss_pred             cccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCc-cccCCCCCceEEeccCccccccCccccCCC-C
Q 039967           89 NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLK-S  166 (445)
Q Consensus        89 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~  166 (445)
                      +             +.+....+..+..+++|+++++.++.+....+. .+..+..+..+...++.+....+..|..++ .
T Consensus        88 ~-------------n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~  154 (242)
T d1xwdc1          88 A-------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  154 (242)
T ss_dssp             C-------------TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             c-------------ccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccc
Confidence            1             223334445567777777777777766532221 122333444444444444433444454443 5


Q ss_pred             cCEEeCCCccccccccccccCCCCCcEEE-ccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEE
Q 039967          167 LLQLDLSENQLIGSIPLSFGNLSSLTLMS-LFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL  242 (445)
Q Consensus       167 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  242 (445)
                      ++.+++.++.+....+. ....++++.+. +.++.++...+..+..+++|++|++++|.+.......|..+++|+.+
T Consensus       155 l~~L~l~~n~l~~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             CEEEECCSSCCCEECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ceeeecccccccccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            66666666665533222 23334444433 34445553333445555666666666665553333344444444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.1e-15  Score=124.32  Aligned_cols=163  Identities=29%  Similarity=0.392  Sum_probs=111.0

Q ss_pred             CCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCC
Q 039967           28 GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN  107 (445)
Q Consensus        28 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~  107 (445)
                      ..+.+++.|+++++.+.+.  +.+..+++|++|++++|.+++..  .+.++++|+.++++++              .+. 
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n--------------~~~-   97 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNN--------------QIA-   97 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS--------------CCC-
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccc--------------ccc-
Confidence            3466777788777777643  34667778888888877776432  2666665555554443              322 


Q ss_pred             CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC
Q 039967          108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN  187 (445)
Q Consensus       108 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  187 (445)
                      .++ .+.+++.|+.++++++.....  ..+..+++|+.+.+++|.+. . ...+..+++|+.|++.+|.+.+. + .+..
T Consensus        98 ~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~-~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~  170 (199)
T d2omxa2          98 DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-D-ISALSGLTSLQQLNFSSNQVTDL-K-PLAN  170 (199)
T ss_dssp             CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-C-CGGGTTCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred             ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-c-cccccccccccccccccccccCC-c-cccC
Confidence            222 377788888888888777632  35777888888888888775 2 23577788888888888887643 2 4778


Q ss_pred             CCCCcEEEccCCccCCCCCccccCCCCcCEE
Q 039967          188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSAL  218 (445)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  218 (445)
                      +++|++|++++|.+++.  ..+..+++|++|
T Consensus       171 l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         171 LTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            88888888888887743  346777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-16  Score=138.79  Aligned_cols=224  Identities=17%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             CEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCC-CccccCCCcccEEEeeC
Q 039967          168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI-PSSIGNLSSLRALYLYN  246 (445)
Q Consensus       168 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~  246 (445)
                      +++|++++.+.......+.. .....+.+......... ........|++++++++.+.... ...+..+++|++|++.+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46788776543111111111 23445555544433221 12223456777777776654222 22355667777777777


Q ss_pred             ccccccChhhhcccccccEEecccCc-cCCCcc-ccccccCCccEEEcCCCc-ccCC-CCcccc-ccCccceeeccCccc
Q 039967          247 NGLYSFVPEEIRYLTSLSELELCTNH-LSGVIP-HSIGNLTGLLLLNMCENH-LSGP-IPKSFK-NLTSVERVLLNQNNL  321 (445)
Q Consensus       247 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~-~~~~L~~L~l~~~~~  321 (445)
                      |.+.......+..+++|++|++++|. ++.... .....+++|++|++++|. +.+. ....+. .++.|+.|+++++..
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            76655444555666677777777653 332111 123445667777776653 2211 111122 235566666655421


Q ss_pred             cccccCCCcceEEcccCccccC-CCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEccCCe-eecccchhhcC
Q 039967          322 SGKVNVPKLGTFIISVNNISES-IPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGS  398 (445)
Q Consensus       322 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~  398 (445)
                                       .++.. .......|++|++|++++|. +++.....+.++++|++|++++|. +++.....++.
T Consensus       161 -----------------~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         161 -----------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             -----------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             -----------------ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence                             11111 11112334555555555543 343444444555555555555542 33223334445


Q ss_pred             CccCceeecCCC
Q 039967          399 LIELQYLDLSTN  410 (445)
Q Consensus       399 ~~~L~~L~l~~~  410 (445)
                      +++|+.|++++|
T Consensus       224 ~~~L~~L~l~~~  235 (284)
T d2astb2         224 IPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeeeCC
Confidence            555555555555

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.7e-15  Score=122.76  Aligned_cols=162  Identities=30%  Similarity=0.395  Sum_probs=88.8

Q ss_pred             cccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeecc
Q 039967          238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLN  317 (445)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  317 (445)
                      +|+.+++++|.+....  .+..+++|++|++++|.+....  .++.+++|++|++++|++.+ ++ .+..+++|+.+++.
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            3444444444443321  1334444555555554444221  23444555555555554442 21 23444444444444


Q ss_pred             CccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhc
Q 039967          318 QNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG  397 (445)
Q Consensus       318 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  397 (445)
                      +|.                   ...  ...+..++.++.+++++|.+++.  ..+..+++|+.+++++|++.+. + .+.
T Consensus       121 ~~~-------------------~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~  175 (210)
T d1h6ta2         121 HNG-------------------ISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLA  175 (210)
T ss_dssp             TSC-------------------CCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGT
T ss_pred             ccc-------------------ccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-ccc
Confidence            443                   221  23455667777777777776532  2455677778888887777632 2 366


Q ss_pred             CCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967          398 SLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS  432 (445)
Q Consensus       398 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  432 (445)
                      ++++|+.|++++|.+++.  ..+..+++|++|+++
T Consensus       176 ~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEcc
Confidence            777888888888877643  357777788877765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=4.8e-15  Score=123.24  Aligned_cols=165  Identities=26%  Similarity=0.378  Sum_probs=112.0

Q ss_pred             CCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCC
Q 039967           29 NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNS  108 (445)
Q Consensus        29 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~  108 (445)
                      .+.+|+.|++++|.+.+..  .+..+++|++|++++|.+++. + .++.+++|+.++++              +|++. .
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~--------------~n~i~-~  104 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLD--------------ENKVK-D  104 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECC--------------SSCCC-C
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccc--------------ccccc-c
Confidence            3556777777777776432  366677777777777777642 2 34555544444443              33333 2


Q ss_pred             ccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCC
Q 039967          109 IPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL  188 (445)
Q Consensus       109 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  188 (445)
                      ++ .+..+++|+.|++.++.+.. . ..+..+++++.+.+.++.+..  +..+..+++|+.+++++|.+.+. + .+..+
T Consensus       105 l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l  177 (210)
T d1h6ta2         105 LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGL  177 (210)
T ss_dssp             GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTC
T ss_pred             cc-cccccccccccccccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCC
Confidence            33 47778888888888887763 2 357778888888888887752  34566788888888888887643 3 37788


Q ss_pred             CCCcEEEccCCccCCCCCccccCCCCcCEEEcc
Q 039967          189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH  221 (445)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  221 (445)
                      ++|++|++++|.++. .+ .+..+++|++|+++
T Consensus       178 ~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         178 TKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            888888888888764 33 47788888888875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=8.3e-15  Score=120.69  Aligned_cols=160  Identities=29%  Similarity=0.417  Sum_probs=93.6

Q ss_pred             CcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeec
Q 039967          237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL  316 (445)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  316 (445)
                      ++++.|+++++.+...  ..++.+++|++|++++|.+....  .+..+++|++|++++|.+.. ++ .+..++.|+.   
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~---  110 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG---  110 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE---
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccc---
Confidence            4455555555554432  12344455555555555444221  14444555555555554431 11 2334444444   


Q ss_pred             cCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhh
Q 039967          317 NQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL  396 (445)
Q Consensus       317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  396 (445)
                                      +++.++....  ...+..+++|+.+++++|.+.. . ..+..+++++.|++.+|++.+.  ..+
T Consensus       111 ----------------L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l  168 (199)
T d2omxa2         111 ----------------LTLFNNQITD--IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPL  168 (199)
T ss_dssp             ----------------EECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGG
T ss_pred             ----------------cccccccccc--ccccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccc
Confidence                            4444444332  2346677888888888888763 2 3577788888888888887633  247


Q ss_pred             cCCccCceeecCCCccccccCccccCCCCccEE
Q 039967          397 GSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYL  429 (445)
Q Consensus       397 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  429 (445)
                      +++++|+.|++++|++++.  ..+..+++|++|
T Consensus       169 ~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         169 ANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            7888888888888887743  347777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.9e-15  Score=129.91  Aligned_cols=255  Identities=18%  Similarity=0.162  Sum_probs=160.3

Q ss_pred             eEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCC-CCccccCCCCcCEEEccCc
Q 039967          145 KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-LPPILGNLKSLSALGLHIN  223 (445)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~  223 (445)
                      +++++++.+.......+.. .....+.+........ ........+|++|+++++.+... ....+..+++|++|++.++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            5677766543111111111 2344555655543322 22234567899999999887532 3445678899999999999


Q ss_pred             cccCCCCccccCCCcccEEEeeCcc-cccc-ChhhhcccccccEEecccCcc-CCCcc-ccc-cccCCccEEEcCCCc--
Q 039967          224 QLSGVIPSSIGNLSSLRALYLYNNG-LYSF-VPEEIRYLTSLSELELCTNHL-SGVIP-HSI-GNLTGLLLLNMCENH--  296 (445)
Q Consensus       224 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~-~~~~~-~~l-~~~~~L~~L~l~~~~--  296 (445)
                      .+.......++.+++|++|++++|. ++.. .......+++|++|++++|.. ..... ..+ ...+.|+.|+++++.  
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence            8876666678889999999999975 3321 222345789999999999743 32211 222 234789999999863  


Q ss_pred             ccCC-CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCc-cccccchhhcc
Q 039967          297 LSGP-IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGK  374 (445)
Q Consensus       297 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~  374 (445)
                      +.+. +...+..+++|++|++++|.                  .+++.....+..+++|++|++++|. +++.....+.+
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~------------------~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSV------------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCT------------------TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             ccccccccccccccccccccccccc------------------CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            2211 22233456667777666543                  2333444566778999999999974 66666667888


Q ss_pred             ccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967          375 LFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN  422 (445)
Q Consensus       375 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  422 (445)
                      +++|+.|++.+|-..+........+|.   |++..++++...+..+.+
T Consensus       224 ~~~L~~L~l~~~~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         224 IPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGN  268 (284)
T ss_dssp             CTTCCEEECTTSSCTTCHHHHHHHSTT---SEESCCCSCCTTCSSCSS
T ss_pred             CCCCCEEeeeCCCCHHHHHHHHHhCcc---ccccCccCCCCCCCccCc
Confidence            999999999998222222222233444   556667777655555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=2.9e-14  Score=116.64  Aligned_cols=129  Identities=26%  Similarity=0.335  Sum_probs=78.2

Q ss_pred             cEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccc
Q 039967          288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE  367 (445)
Q Consensus       288 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  367 (445)
                      +.++.+++++. .+|..+.  +.+++|++++|.+..                  ......+..+++|++|++++|.+...
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~------------------~~~~~~f~~l~~L~~L~L~~N~i~~~   69 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGR------------------ISSDGLFGRLPHLVKLELKRNQLTGI   69 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCS------------------BCCSCSGGGCTTCCEEECCSSCCCCB
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcc------------------cccccccCCCceEeeeeccccccccc
Confidence            45677777666 4444332  456666666665531                  12233455666666666666666655


Q ss_pred             cchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967          368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       368 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      .+..+..+++|++|++++|++....+..|.++++|++|+|++|+++...+.+|..+++|+++++.+|+|.
T Consensus        70 ~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5566666666666666666666555555666666666666666666555666666666666666666665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=3.5e-14  Score=116.16  Aligned_cols=127  Identities=30%  Similarity=0.401  Sum_probs=66.0

Q ss_pred             EEEccCCcccCCCCccccCCCCCceEEeccCcccc-ccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCC
Q 039967          121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN  199 (445)
Q Consensus       121 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  199 (445)
                      .++.+++.++ .+|..+.  +++++|++++|.++. ..+..|.++++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4455555544 3333332  355555555555542 22334455555555555555555444445555555555555555


Q ss_pred             ccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcccc
Q 039967          200 SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLY  250 (445)
Q Consensus       200 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  250 (445)
                      .+....+..|.++++|++|++++|.+....+.+|..+++|+++++++|.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            555444445555555555555555555444455555556666666555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=9.9e-15  Score=131.48  Aligned_cols=242  Identities=21%  Similarity=0.199  Sum_probs=136.7

Q ss_pred             ccccCCCCCcEEEccCCccCCC----CCccccCCCCcCEEEccCccccCC----------CCccccCCCcccEEEeeCcc
Q 039967          183 LSFGNLSSLTLMSLFNNSLSGS----LPPILGNLKSLSALGLHINQLSGV----------IPSSIGNLSSLRALYLYNNG  248 (445)
Q Consensus       183 ~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~  248 (445)
                      ..+.....++.|++++|.+...    +...+...+.|+.++++.+.....          ....+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            4456677888888888766431    223345567778887776543211          11223445666666666665


Q ss_pred             cccc----ChhhhcccccccEEecccCccCCCccccc-------------cccCCccEEEcCCCcccCCC----Cccccc
Q 039967          249 LYSF----VPEEIRYLTSLSELELCTNHLSGVIPHSI-------------GNLTGLLLLNMCENHLSGPI----PKSFKN  307 (445)
Q Consensus       249 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~~----~~~~~~  307 (445)
                      +...    ....+...++|+.|++++|.+.......+             ...+.++.+++.++.+....    ...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            5432    12233345566666666665432111111             12344555555555443221    112233


Q ss_pred             cCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccc----cchhhccccCCCEEEc
Q 039967          308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE----IPVQLGKLFSLNKLIL  383 (445)
Q Consensus       308 ~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l  383 (445)
                      ++.|+++++++|.+.....              .......+..+++|+.|++++|.++..    +...+..+++|++|++
T Consensus       185 ~~~L~~L~L~~n~i~~~g~--------------~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGI--------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHH--------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             hhhhccccccccccccccc--------------ccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            4444444444444321100              001223456778899999999887643    3345677889999999


Q ss_pred             cCCeeecccch----hhc--CCccCceeecCCCccccccCc----ccc-CCCCccEEeCCCCcccc
Q 039967          384 NLNQLSGGMPL----ELG--SLIELQYLDLSTNKLKSSIPK----SIG-NLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       384 ~~~~~~~~~~~----~~~--~~~~L~~L~l~~~~~~~~~~~----~~~-~~~~L~~l~l~~~~~~~  438 (445)
                      ++|++.+....    .+.  ..+.|++|++++|++......    .+. +++.|++|++++|++..
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            99988643222    232  246799999999988754433    332 57889999999998864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.1e-14  Score=110.31  Aligned_cols=126  Identities=21%  Similarity=0.124  Sum_probs=76.9

Q ss_pred             ccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967          283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN  362 (445)
Q Consensus       283 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  362 (445)
                      .+..++.|++++|++. .++..+..+++|+.|++++|.+..                    . ..+..+++|++|++++|
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~--------------------l-~~~~~l~~L~~L~ls~N   73 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--------------------L-DGFPLLRRLKTLLVNNN   73 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE--------------------E-CCCCCCSSCCEEECCSS
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc--------------------c-CCcccCcchhhhhcccc
Confidence            3445666666666665 334444555666666666665431                    1 23455677777777777


Q ss_pred             ccccccchhhccccCCCEEEccCCeeecccc-hhhcCCccCceeecCCCccccccC---ccccCCCCccEEe
Q 039967          363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSLIELQYLDLSTNKLKSSIP---KSIGNLLRLCYLD  430 (445)
Q Consensus       363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~  430 (445)
                      .++...+..+..+++|++|++++|++.+... ..+..+++|+.|++++|+++....   ..+..+|+|+.|+
T Consensus        74 ~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7765544455667777777777777753221 356667777777777777764321   2356677777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=4e-14  Score=127.46  Aligned_cols=141  Identities=14%  Similarity=0.190  Sum_probs=85.8

Q ss_pred             ccccccEEecccCccCCCccc----cccccCCccEEEcCCCcccCC-----CCccccccCccceeeccCccccccccCCC
Q 039967          259 YLTSLSELELCTNHLSGVIPH----SIGNLTGLLLLNMCENHLSGP-----IPKSFKNLTSVERVLLNQNNLSGKVNVPK  329 (445)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  329 (445)
                      ..+.|+.+.+.++.+......    .+...+.++.+++++|.+...     ....+..+++|+.|++++|.+.....   
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~---  232 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---  232 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc---
Confidence            345677777777766533222    345567788888888876532     22345566777777777766542110   


Q ss_pred             cceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhh----c--cccCCCEEEccCCeeecc----cchhh-cC
Q 039967          330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL----G--KLFSLNKLILNLNQLSGG----MPLEL-GS  398 (445)
Q Consensus       330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~--~~~~L~~L~l~~~~~~~~----~~~~~-~~  398 (445)
                                  ..+...+..+++|++|++++|.+.+.....+    .  ..++|++|++++|++...    +...+ ..
T Consensus       233 ------------~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~  300 (344)
T d2ca6a1         233 ------------SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  300 (344)
T ss_dssp             ------------HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             ------------ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHcc
Confidence                        1122345567788888888888775433333    2  236788888888877532    12223 24


Q ss_pred             CccCceeecCCCcccc
Q 039967          399 LIELQYLDLSTNKLKS  414 (445)
Q Consensus       399 ~~~L~~L~l~~~~~~~  414 (445)
                      .++|+.|++++|.+..
T Consensus       301 ~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         301 MPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCEEECTTSBSCT
T ss_pred             CCCCCEEECCCCcCCC
Confidence            5678888888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.1e-12  Score=98.27  Aligned_cols=102  Identities=25%  Similarity=0.291  Sum_probs=74.2

Q ss_pred             eEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCc
Q 039967          332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK  411 (445)
Q Consensus       332 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  411 (445)
                      .|++++++++.. + .+..++.|++|++++|.++ .+|..+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            456666666533 2 3677788888888888887 455667788888888888888873 33 47778888888888888


Q ss_pred             ccccc-CccccCCCCccEEeCCCCcccc
Q 039967          412 LKSSI-PKSIGNLLRLCYLDLSNNQFGH  438 (445)
Q Consensus       412 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~  438 (445)
                      +.... ...+..+++|+++++++|++++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            87543 3567778888888888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.2e-12  Score=97.96  Aligned_cols=117  Identities=24%  Similarity=0.286  Sum_probs=66.9

Q ss_pred             EEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcccccc
Q 039967          289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEI  368 (445)
Q Consensus       289 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  368 (445)
                      +|++++|.++ .++ .+..++.|++|++++|.+.                    ..|..+..+++|++|++++|.+++. 
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~--------------------~lp~~~~~l~~L~~L~l~~N~i~~l-   58 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR--------------------ALPPALAALRCLEVLQASDNALENV-   58 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC--------------------CCCGGGGGCTTCCEEECCSSCCCCC-
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC--------------------cchhhhhhhhccccccccccccccc-
Confidence            4555555555 222 2445555555555554443                    3344556667777777777776633 


Q ss_pred             chhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCcccccc--Cc-cccCCCCccEE
Q 039967          369 PVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSI--PK-SIGNLLRLCYL  429 (445)
Q Consensus       369 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~-~~~~~~~L~~l  429 (445)
                      + .+.++++|++|++++|++.+.. ...+..+++|+.|++++|+++...  +. ....+|+|+.|
T Consensus        59 ~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          59 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            2 4666777777777777776332 245666777777777777776432  11 22345666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.4e-13  Score=104.71  Aligned_cols=111  Identities=23%  Similarity=0.142  Sum_probs=65.9

Q ss_pred             ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967          113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT  192 (445)
Q Consensus       113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  192 (445)
                      +.++..+++|++++|.++. ++..+..+++|++|++++|.+.. . ..+..+++|++|++++|.+....+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4566677777777777763 34555666777777777777663 2 3466677777777777776643333345566666


Q ss_pred             EEEccCCccCCCCC-ccccCCCCcCEEEccCcccc
Q 039967          193 LMSLFNNSLSGSLP-PILGNLKSLSALGLHINQLS  226 (445)
Q Consensus       193 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  226 (445)
                      +|++.+|.+..... ..+..+++|+++++++|++.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            66666666653211 23444555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.7e-11  Score=92.64  Aligned_cols=105  Identities=21%  Similarity=0.102  Sum_probs=81.4

Q ss_pred             ceEEcccCccccCCCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCC
Q 039967          331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST  409 (445)
Q Consensus       331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  409 (445)
                      +.++..+.... ..+..+..+++|++|+++++. ++...+..|..+++|+.|++++|++....+.+|.++++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34444444444 345567778899999997664 7766677888899999999999999867678899999999999999


Q ss_pred             CccccccCccccCCCCccEEeCCCCccc
Q 039967          410 NKLKSSIPKSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~  437 (445)
                      |+++...+..|... .|++|++++|+|.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCcccChhhhccc-cccccccCCCccc
Confidence            99986555566544 6999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=8.7e-13  Score=107.79  Aligned_cols=133  Identities=22%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             ccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEE
Q 039967          279 HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLD  358 (445)
Q Consensus       279 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  358 (445)
                      ..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.+..                    .+.....++.|++|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~--------------------i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK--------------------IENLDAVADTLEELW   99 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS--------------------CSSHHHHHHHCCEEE
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc--------------------ccccccccccccccc
Confidence            345556666666666666652 22 35556666666666655431                    111222234566666


Q ss_pred             CCCCccccccchhhccccCCCEEEccCCeeecccc-hhhcCCccCceeecCCCccccccCcc----------ccCCCCcc
Q 039967          359 LSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSLIELQYLDLSTNKLKSSIPKS----------IGNLLRLC  427 (445)
Q Consensus       359 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~----------~~~~~~L~  427 (445)
                      +++|.++..  ..+.++++|+.|++++|++.+... ..+..+++|+.|++++|++....+..          +..+|+|+
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            666666532  235566677777777776653221 34566677777777777665332221          45567777


Q ss_pred             EEeCCCCccc
Q 039967          428 YLDLSNNQFG  437 (445)
Q Consensus       428 ~l~l~~~~~~  437 (445)
                      .||  +.+++
T Consensus       178 ~LD--~~~I~  185 (198)
T d1m9la_         178 KLD--GMPVD  185 (198)
T ss_dssp             EES--SGGGT
T ss_pred             EeC--CccCC
Confidence            665  44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=2.2e-12  Score=105.35  Aligned_cols=110  Identities=20%  Similarity=0.308  Sum_probs=52.5

Q ss_pred             cccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCc
Q 039967           25 PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNS  104 (445)
Q Consensus        25 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~  104 (445)
                      ..+..+++|++|++++|.|.+. + .+..+++|+.|++++|.+. .++.....++              +|++|++++|.
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~--------------~L~~L~l~~N~  104 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVAD--------------TLEELWISYNQ  104 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHH--------------HCCEEECSEEE
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccc--------------ccccccccccc
Confidence            3455566666666666666533 2 4556666666666666554 2222222222              23333333333


Q ss_pred             CCCCccccccCCCCCcEEEccCCcccCCCC-ccccCCCCCceEEeccCcc
Q 039967          105 LFNSIPLVLGNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLDKLYLYSNSF  153 (445)
Q Consensus       105 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~  153 (445)
                      +.. + ..+..+++|++|++++|.++.... ..+..+++|+.|.+.+|++
T Consensus       105 i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         105 IAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            332 1 124445555555555555542211 2344555555555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.7e-09  Score=82.92  Aligned_cols=105  Identities=21%  Similarity=0.131  Sum_probs=52.4

Q ss_pred             CcEEEccCCcccCCCCccccCCCCCceEEeccC-ccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967          119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSN-SFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF  197 (445)
Q Consensus       119 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  197 (445)
                      .+.++..++.+. ..|..+..+++|++|.+.++ .++...+.+|.++++|+.|++++|.+..+.+.+|..+++|++|+++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555444 33444555555555555443 2443334455555566666665555554444555555555555555


Q ss_pred             CCccCCCCCccccCCCCcCEEEccCccc
Q 039967          198 NNSLSGSLPPILGNLKSLSALGLHINQL  225 (445)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~  225 (445)
                      +|.+....+..+.. ..|+.+++++|.+
T Consensus        89 ~N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             CCCCcccChhhhcc-ccccccccCCCcc
Confidence            55555332332222 2355555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.5e-07  Score=70.00  Aligned_cols=82  Identities=26%  Similarity=0.238  Sum_probs=59.0

Q ss_pred             cCCCCCcEEECCCCccccc--cchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccC-------cc
Q 039967          349 GDSPKLQVLDLSSNNIVGE--IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP-------KS  419 (445)
Q Consensus       349 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~  419 (445)
                      ..++.|++|++++|.++..  .+..+..+++|+.|++++|.+....+..+.....|+.|++++|++.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4568888888888888754  24556778899999999998874444344455678999999998874332       22


Q ss_pred             ccCCCCccEEe
Q 039967          420 IGNLLRLCYLD  430 (445)
Q Consensus       420 ~~~~~~L~~l~  430 (445)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            56788888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.6e-07  Score=71.91  Aligned_cols=74  Identities=24%  Similarity=0.132  Sum_probs=58.2

Q ss_pred             ccchhhccccCCCEEEccCCeeeccc--chhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccC
Q 039967          367 EIPVQLGKLFSLNKLILNLNQLSGGM--PLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKI  440 (445)
Q Consensus       367 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  440 (445)
                      .....+.+++.|++|++++|+++...  +..+..+++|+.|++++|.+....+-.+.....|+++++.+|++.+..
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            34445568999999999999998543  355678999999999999998655544445668999999999998643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=2.7e-06  Score=66.37  Aligned_cols=90  Identities=12%  Similarity=0.049  Sum_probs=60.0

Q ss_pred             cccCCCCCcEEECCCCccccc----cchhhccccCCCEEEccCCeeecc----cchhhcCCccCceeecCCCccccc---
Q 039967          347 EIGDSPKLQVLDLSSNNIVGE----IPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLIELQYLDLSTNKLKSS---  415 (445)
Q Consensus       347 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---  415 (445)
                      .+...+.|++|++++|.+.+.    +...+...+.|++|++++|++...    +...+...++|+.|++++|.....   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            455667788888888887643    333455678888888888887532    223456667888888888764432   


Q ss_pred             ----cCccccCCCCccEEeCCCCcc
Q 039967          416 ----IPKSIGNLLRLCYLDLSNNQF  436 (445)
Q Consensus       416 ----~~~~~~~~~~L~~l~l~~~~~  436 (445)
                          ...++...+.|++++++.+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence                234455677888888876643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=1.5e-05  Score=62.03  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             cCCCCCcEEECCCC-ccccc----cchhhccccCCCEEEccCCeeecc----cchhhcCCccCceeecCCCccccccC--
Q 039967          349 GDSPKLQVLDLSSN-NIVGE----IPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLIELQYLDLSTNKLKSSIP--  417 (445)
Q Consensus       349 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~--  417 (445)
                      ...+.|++|+++++ .+...    +...+...+.|++|++++|.+...    +...+...++|+.|+|++|.+...+.  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34688999999985 46533    344567789999999999998642    22345567899999999999986554  


Q ss_pred             --ccccCCCCccEEeCCCCccc
Q 039967          418 --KSIGNLLRLCYLDLSNNQFG  437 (445)
Q Consensus       418 --~~~~~~~~L~~l~l~~~~~~  437 (445)
                        .++...++|++|++.+|.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence              35678899999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.36  E-value=2.8e-05  Score=60.34  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=59.5

Q ss_pred             cccCCCCCcEEECCCCccccc----cchhhccccCCCEEEccCCeeecc----cchhhcCCccCceeecC--CCcccccc
Q 039967          347 EIGDSPKLQVLDLSSNNIVGE----IPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLIELQYLDLS--TNKLKSSI  416 (445)
Q Consensus       347 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~--~~~~~~~~  416 (445)
                      .+..+++|++|++++|.+.+.    +...+...++++.+++.+|.+...    +...+...++|+.++|+  +|.+....
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            455678888888888887644    333455678888888888877532    22445667788875554  45554432


Q ss_pred             ----CccccCCCCccEEeCCCCcc
Q 039967          417 ----PKSIGNLLRLCYLDLSNNQF  436 (445)
Q Consensus       417 ----~~~~~~~~~L~~l~l~~~~~  436 (445)
                          ...+..++.|++|++..+..
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCCC
Confidence                23455788888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.00072  Score=51.99  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             cCCCCCcEEECCCC-ccccc----cchhhccccCCCEEEccCCeeeccc----chhhcCCccCceeecCCCccccccC--
Q 039967          349 GDSPKLQVLDLSSN-NIVGE----IPVQLGKLFSLNKLILNLNQLSGGM----PLELGSLIELQYLDLSTNKLKSSIP--  417 (445)
Q Consensus       349 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~--  417 (445)
                      ...+.|++|+++++ .++..    +...+...+.|++|++++|++....    ...+...++++.+++++|.+...+.  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            46689999999984 46533    3445567899999999999886432    2345567899999999999876543  


Q ss_pred             --ccccCCCCccEEeCC--CCccc
Q 039967          418 --KSIGNLLRLCYLDLS--NNQFG  437 (445)
Q Consensus       418 --~~~~~~~~L~~l~l~--~~~~~  437 (445)
                        .++...++|+++++.  +|++.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhCccccEEeeccCCCcCc
Confidence              456778899986665  55554