Citrus Sinensis ID: 039997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Secondary Structure (PSIPRED)
cccccEEEcccccccEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccEEEccccccccccccccccHHccccccccccccccccccccccccEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEHHHHEEHHHHHcccHHHHHHHHHHHHHHcEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHcccccEEEccccccccccccccccEEEcccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEEcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHEEEEEEEHEcc
Coil and Loop (DISEMBL)
dsaleildlrdnyfsgripyginEHSNLRALLLKgnylqgpiphqlcqLRKLSImdlshnrlngsipscITNLLfwkvgngdlyglvergrdfdleDIYNYYnstvplsldrsdtrtlDTQVVVNFMTKNRYESYKGVILEYMAgldlssneltgdisseigdlrnihglnlshnflsgsipesfsnlkMIESLDLshnklngqipqltelhslskfdvsynnlscpipdkeqfstfdessyrgnlnlccppinksctnlpelletsskgpedesaVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Flexible Loop (DISEMBL)
DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNStvplsldrsdtrtLDTQVVVnfmtknryesYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Low Complexity Region (SEG)
DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Disordered region (IsUnstruct)
****EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNL****************VDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Disordered Region (DISOPRED)
DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI**************************VALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Disordered Region (DISEMBL)
DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Disordered Region (DISPRO)
*SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCT****************SAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.867	0.247	0.310	1e-26
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.648	0.211	0.365	2e-26
C0LGW6	966	LRR receptor-like serine/	no	no	0.756	0.260	0.325	1e-25
Q9LHP4	1141	Receptor-like protein kin	no	no	0.672	0.196	0.326	3e-25
C0LGE4	882	Probable LRR receptor-lik	no	no	0.627	0.236	0.347	5e-25
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.678	0.224	0.361	5e-25
Q9LJF3	1164	Receptor-like protein kin	no	no	0.864	0.247	0.328	6e-25
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.672	0.208	0.340	1e-24
Q6XAT2	967	LRR receptor-like serine/	no	no	0.708	0.244	0.329	2e-24
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.879	0.244	0.291	2e-24

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 144/316 (45%), Gaps = 27/316 (8%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 66
           + L  N  +G+IP GI   S L  L L  N L G +P QL   + L  +DL+ N L G +
Sbjct: 504 ISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDL 563

Query: 67  PSCITN---LLFWKVGNGDLYGLV--ERGRD-------FDLEDIYNYYNSTVPLSLDRSD 114
           P  + +   L+     +G  +  V  E G D        + E I       +P+      
Sbjct: 564 PGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPA 623

Query: 115 TRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH 174
           TR      +  F       S  G ++ +    D+S N ++G I    G++  +  LNL H
Sbjct: 624 TRIYSGMTMYTF-------SANGSMIYF----DISYNAVSGFIPPGYGNMGYLQVLNLGH 672

Query: 175 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ 233
           N ++G+IP+SF  LK I  LDLSHN L G +P  L  L  LS  DVS NNL+ PIP   Q
Sbjct: 673 NRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQ 732

Query: 234 FSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASCVTV 293
            +TF  S Y  N  LC  P+ + C + P    TS    + ++    V    +F   C  +
Sbjct: 733 LTTFPVSRYANNSGLCGVPL-RPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVM 791

Query: 294 MLGLLAILWVNPYWRK 309
           +  ++A+  V    +K
Sbjct: 792 L--VMALYRVRKVQKK 805

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 24  EHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP---SCITNLLFWKVGN 80
           +  NL+ L++    L+G +P  L     L ++DLS N+L+G+IP     + +L +  + N
Sbjct: 423 QFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSN 482

Query: 81  GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVIL 140
               G +       L+ + +  N+    S D    +  +T      +  N+  S+  +I 
Sbjct: 483 NTFIGEIPHSLT-SLQSLVSKENAVEEPSPDFPFFKKKNTNA--GGLQYNQPSSFPPMI- 538

Query: 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 200
                 DLS N L G I  E GDLR +H LNL +N LSG+IP + S +  +E LDLSHN 
Sbjct: 539 ------DLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNN 592

Query: 201 LNGQI-PQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLC 249
           L+G I P L +L  LS F V+YN LS PIP   QF TF  SS+ GN  LC
Sbjct: 593 LSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLC 642

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 142/298 (47%), Gaps = 46/298 (15%)

Query: 3   ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
           AL +LDL DN   G IP  +   S    L L GN L GPIP +L  + +LS + L+ N+L
Sbjct: 287 ALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKL 346

Query: 63  NGSIPSCITNL--LF-WKVGNGDLYGLVERG-------RDFDLEDIYNYYNSTVPLSLDR 112
            G+IP  +  L  LF   + N  L G +            F++    N  + ++PL+   
Sbjct: 347 VGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHG--NLLSGSIPLAF-- 402

Query: 113 SDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLD---LSSNELTGDISSEIGDLRNIHG 169
              R L +   +N ++ N ++    V L ++  LD   LS N  +G I   +GDL ++  
Sbjct: 403 ---RNLGSLTYLN-LSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHLLI 458

Query: 170 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP----------------------- 206
           LNLS N LSG +P  F NL+ I+ +D+S N L+G IP                       
Sbjct: 459 LNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKI 518

Query: 207 --QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPE 262
             QLT   +L   +VS+NNLS  +P  + FS F  +S+ GN  LC   +   C  LP+
Sbjct: 519 PDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSICGPLPK 576

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 125/254 (49%), Gaps = 30/254 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S+L  L L  N  +G IP GI     +  L    N L G +P ++    +L ++DLS+N 
Sbjct: 466 SSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNS 525

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L GS+P+ +++L   +V                L+   N ++  +P SL R         
Sbjct: 526 LEGSLPNPVSSLSGLQV----------------LDVSANQFSGKIPASLGR--------L 561

Query: 122 VVVN--FMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIH-GLNLSHN 175
           V +N   ++KN +       L   +GL   DL SNEL+G+I SE+GD+ N+   LNLS N
Sbjct: 562 VSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSN 621

Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFS 235
            L+G IP   ++L  +  LDLSHN L G +  L  + +L   ++SYN+ S  +PD + F 
Sbjct: 622 RLTGKIPSKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLPDNKLFR 681

Query: 236 TFDESSYRGNLNLC 249
                   GN  LC
Sbjct: 682 QLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 125/259 (48%), Gaps = 50/259 (19%)

Query: 3   ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
           +LE LD   N  +GRIP G+    +L+ L L+ N L G IP  + ++  LS++ L +N +
Sbjct: 285 SLEFLDASSNELTGRIPTGVMGCKSLKLLDLESNKLNGSIPGSIGKMESLSVIRLGNNSI 344

Query: 63  NGSIPSCITNLLFWKV---GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
           +G IP  I +L F +V    N +L G V        EDI N                   
Sbjct: 345 DGVIPRDIGSLEFLQVLNLHNLNLIGEVP-------EDISNCR----------------- 380

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                             V+LE    LD+S N+L G IS ++ +L NI  L+L  N L+G
Sbjct: 381 ------------------VLLE----LDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNG 418

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFD 238
           SIP    NL  ++ LDLS N L+G IP  L  L++L+ F+VSYNNLS  IP       F 
Sbjct: 419 SIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFG 478

Query: 239 ESSYRGNLNLCCPPINKSC 257
            S++  N  LC  P+   C
Sbjct: 479 SSAFSNNPFLCGDPLVTPC 497

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 133/260 (51%), Gaps = 34/260 (13%)

Query: 4   LEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
           L  L L  N+    +P   + H   L+ L++    L G +P  L    +L ++DLS NRL
Sbjct: 392 LTTLVLTLNFHGEALPDDSSLHFEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRL 451

Query: 63  NGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQV 122
            G+IPS I          GD   L      F L+   N +   +P SL + ++ T    +
Sbjct: 452 TGAIPSWI----------GDFKAL------FYLDLSNNSFTGEIPKSLTKLESLT-SRNI 494

Query: 123 VVN--------FMTKNRYESYKGV----ILEYMAGLDLSSNELTGDISSEIGDLRNIHGL 170
            VN        FM +N  ES + +    I  +   ++L  N L+G I  E G+L+ +H  
Sbjct: 495 SVNEPSPDFPFFMKRN--ESARALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVF 552

Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229
           +L  N LSGSIP S S +  +E+LDLS+N+L+G IP  L +L  LSKF V+YNNLS  IP
Sbjct: 553 DLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIP 612

Query: 230 DKEQFSTFDESSYRGNLNLC 249
              QF TF  SS+  N +LC
Sbjct: 613 SGGQFQTFPNSSFESN-HLC 631

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 153/320 (47%), Gaps = 32/320 (10%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           LE L L +N  +G +P  I++ +N+  + L  N L G IP  + +L KL+I+ L +N L 
Sbjct: 477 LETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLT 536

Query: 64  GSIPSCITNL--LFWK-------VGN--GDLY---GLVE----RGRDFDL---EDIYNYY 102
           G+IPS + N   L W         GN  G+L    GLV      G+ F     E   +  
Sbjct: 537 GNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCR 596

Query: 103 NSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVIL------EYMAGLDLSSNELTGD 156
            +   +  +      L+   +V+   K R   Y G+ +        M  LDLS N ++G 
Sbjct: 597 GAGGLVEFEGIRAERLEHFPMVHSCPKTRI--YSGMTMYMFSSNGSMIYLDLSYNAVSGS 654

Query: 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLS 215
           I    G +  +  LNL HN L+G+IP+SF  LK I  LDLSHN L G +P  L  L  LS
Sbjct: 655 IPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLS 714

Query: 216 KFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDES 275
             DVS NNL+ PIP   Q +TF  + Y  N  LC  P+   C++      + +   +   
Sbjct: 715 DLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPL-PPCSSGSRPTRSHAHPKKQSI 773

Query: 276 AVDMVA-LYWSFVASCVTVM 294
           A  M A + +SF+   + +M
Sbjct: 774 ATGMSAGIVFSFMCIVMLIM 793

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 20/244 (8%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 66
           L + +N  SG+IP  I E  NL  L L  N+  G +P+++  +  L ++D+ +N + G I
Sbjct: 457 LRVGENQLSGQIPKEIGELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGDI 516

Query: 67  PSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNF 126
           P+ + NL+  +                DL    N +   +PLS     +      +  N 
Sbjct: 517 PAQLGNLVNLE--------------QLDLS--RNSFTGNIPLSFGNL-SYLNKLILNNNL 559

Query: 127 MTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIH-GLNLSHNFLSGSIPESF 185
           +T    +S K   L+ +  LDLS N L+G+I  E+G + ++   L+LS+N  +G+IPE+F
Sbjct: 560 LTGQIPKSIKN--LQKLTLLDLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETF 617

Query: 186 SNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245
           S+L  ++SLDLS N L+G I  L  L SL+  ++S NN S PIP    F T   +SY  N
Sbjct: 618 SDLTQLQSLDLSSNSLHGDIKVLGSLTSLASLNISCNNFSGPIPSTPFFKTISTTSYLQN 677

Query: 246 LNLC 249
            NLC
Sbjct: 678 TNLC 681

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 138/288 (47%), Gaps = 52/288 (18%)

Query: 3   ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
           AL +LDL DN  +G IP  +   S    L L GN L G IP +L  + +LS + L+ N L
Sbjct: 289 ALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNEL 348

Query: 63  NGSIPSCITNL--LF-WKVGNGDLYGLVERG-------RDFDLEDIYNYYNSTVPLSLDR 112
            G IP  +  L  LF   + N +L GL+            F++    N+ +  VPL    
Sbjct: 349 VGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHG--NFLSGAVPLEF-- 404

Query: 113 SDTRTLDTQVVVNFMTKNRYESYKGVILEYMA------GLDLSSNELTGDISSEIGDLRN 166
              R L +   +N  +     S+KG I   +        LDLS N  +G I   +GDL +
Sbjct: 405 ---RNLGSLTYLNLSSN----SFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEH 457

Query: 167 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN------------------------KLN 202
           +  LNLS N L+G++P  F NL+ I+ +D+S N                        K++
Sbjct: 458 LLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIH 517

Query: 203 GQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLC 249
           G+IP QLT   SL+  ++S+NNLS  IP  + F+ F  +S+ GN  LC
Sbjct: 518 GKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPFLC 565

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 162/377 (42%), Gaps = 84/377 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  L L  NY SG IP  +   S LR L L  N L+G IP +L  ++ L  + L  N 
Sbjct: 440 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 499

Query: 62  LNGSIPSCI---TNLLFWKVGNGDLYGLVER--GRDFDLEDIY---NYYNSTVPLSLDRS 113
           L G IPS +   TNL +  + N  L G + +  GR  +L  +    N ++  +P  L   
Sbjct: 500 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--G 557

Query: 114 DTRTL---------------------DTQVVVNFMTKNRYESYK-----------GVILE 141
           D R+L                       ++  NF+   RY   K           G +LE
Sbjct: 558 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 617

Query: 142 Y-------------------------------------MAGLDLSSNELTGDISSEIGDL 164
           +                                     M  LD+S N L+G I  EIG +
Sbjct: 618 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 677

Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNN 223
             +  LNL HN +SGSIP+   +L+ +  LDLS NKL+G+IPQ ++ L  L++ D+S NN
Sbjct: 678 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 737

Query: 224 LSCPIPDKEQFSTFDESSYRGNLNLCCPPINK----SCTNLPELLETSSKGPEDESAVDM 279
           LS PIP+  QF TF  + +  N  LC  P+ +    +         +  + P   +    
Sbjct: 738 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHGRRPASLAGSVA 797

Query: 280 VALYWSFVASCVTVMLG 296
           + L +SFV     +++G
Sbjct: 798 MGLLFSFVCIFGLILVG 814

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
357468861	1016	Receptor-like protein kinase [Medicago t	0.951	0.312	0.472	9e-73
358345693	1011	Receptor-like protein kinase [Medicago t	0.951	0.313	0.472	1e-72
357468851	942	Receptor-like protein kinase [Medicago t	0.915	0.323	0.466	1e-68
359483163	1047	PREDICTED: LRR receptor-like serine/thre	0.957	0.304	0.469	2e-68
358345471	933	Receptor kinase [Medicago truncatula] gi	0.987	0.352	0.447	2e-68
224134891	953	predicted protein [Populus trichocarpa]	0.957	0.334	0.456	2e-68
358345705	703	Receptor protein kinase-like protein [Me	0.921	0.436	0.481	3e-68
357468869	703	Receptor protein kinase-like protein [Me	0.921	0.436	0.481	4e-68
224115344	552	predicted protein [Populus trichocarpa]	0.957	0.577	0.472	2e-67
298204682	453	unnamed protein product [Vitis vinifera]	0.873	0.642	0.483	9e-67

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 214/322 (66%), Gaps = 5/322 (1%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L++LDLR+N FSG+IP  +++ S LR LLL GN  +G IP QLC+L+K++IMDLS N LN
Sbjct: 645 LQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLN 704

Query: 64  GSIPSCITNLLFWKVGNGD-LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT-- 120
            SIPSC  N+LF      D ++ L        ++D + +++S++ + L     + ++   
Sbjct: 705 ASIPSCFRNMLFGMRQYVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLL 764

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS 180
            + V F TK+    YKG +LE M GLDLS N+LTG I S+IGDL+ I  LNLSHN LSG 
Sbjct: 765 HLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGP 824

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE 239
           IP +FSNL  IESLDLS+N L+G+IP +LT+L+ LS F+VSYNNLS   P   QF+ FDE
Sbjct: 825 IPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDE 884

Query: 240 SSYRGNLNLCCPPINKSCTNL-PELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLL 298
            +YRGN +LC P +++ C  + P     S+   E+E+ VDM+  YWSF AS +T++L  +
Sbjct: 885 DNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNEEEETGVDMITFYWSFTASYITILLAFI 944

Query: 299 AILWVNPYWRKLWFYFIEECID 320
            +L +NP WR  WFY+I + ++
Sbjct: 945 TVLCINPRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 214/322 (66%), Gaps = 5/322 (1%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L++LDLR+N FSG+IP  +++ S LR LLL GN  +G IP QLC+L+K++IMDLS N LN
Sbjct: 645 LQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLN 704

Query: 64  GSIPSCITNLLFWKVGNGD-LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT-- 120
            SIPSC  N+LF      D ++ L        ++D + +++S++ + L     + ++   
Sbjct: 705 ASIPSCFRNMLFGMRQYVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLL 764

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS 180
            + V F TK+    YKG +LE M GLDLS N+LTG I S+IGDL+ I  LNLSHN LSG 
Sbjct: 765 HLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGP 824

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE 239
           IP +FSNL  IESLDLS+N L+G+IP +LT+L+ LS F+VSYNNLS   P   QF+ FDE
Sbjct: 825 IPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDE 884

Query: 240 SSYRGNLNLCCPPINKSCTNL-PELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLL 298
            +YRGN +LC P +++ C  + P     S+   E+E+ VDM+  YWSF AS +T++L  +
Sbjct: 885 DNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNEEEETGVDMITFYWSFTASYITILLAFI 944

Query: 299 AILWVNPYWRKLWFYFIEECID 320
            +L +NP WR  WFY+I + ++
Sbjct: 945 TVLCINPRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468851|ref|XP_003604710.1| Receptor-like protein kinase [Medicago truncatula] gi|355505765|gb|AES86907.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/328 (46%), Positives = 204/328 (62%), Gaps = 23/328 (7%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L++LDLR+N  SG+IP  +++ S LR LLL GN  +G IP Q C  +K+ IMDLS N 
Sbjct: 523 SKLQLLDLRENKLSGKIPNWMDKLSELRVLLLGGNNFEGEIPIQFCWFKKIDIMDLSRNM 582

Query: 62  LNGSIPSCITNLLFWK---VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRS----- 113
           LN SIPSC+ N+ F     V N D     + G  F+    ++ Y +   +S + S     
Sbjct: 583 LNASIPSCLQNMSFGMRQYVHNDD-----DDGPIFE----FSMYGAPTDISFNASLLIRH 633

Query: 114 ----DTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHG 169
               ++   + Q  V F TK+   SYKG++LE M GLDLS N+LTG I S+IGDL+ I  
Sbjct: 634 PWIGNSLKEELQFEVEFRTKHNEYSYKGIVLENMTGLDLSCNKLTGVIPSQIGDLQQIRA 693

Query: 170 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPI 228
           LNLSHN LSG IP +FSNL  IESLDLS+N L+G+IP +LT+L+ LS F+VSYNNLS   
Sbjct: 694 LNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTP 753

Query: 229 PDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGP-EDESAVDMVALYWSFV 287
           P   QF  F E +Y GN  LC P +N+ C ++     + S    E E+ VDM+  YWSF 
Sbjct: 754 PSTGQFGGFVEENYIGNPGLCGPFVNRKCEHVESSASSQSNDDGEKETMVDMITFYWSFT 813

Query: 288 ASCVTVMLGLLAILWVNPYWRKLWFYFI 315
           AS +T++L L+ +L +NP WR  WFY+I
Sbjct: 814 ASYITILLALITVLCINPRWRMAWFYYI 841

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483163|ref|XP_002263908.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/332 (46%), Positives = 203/332 (61%), Gaps = 13/332 (3%)

Query: 4    LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
            L  LDL DN  SG+IP+ I + S LR L L+GN   G IP+ LCQL K+SI+DLS+NR +
Sbjct: 703  LLTLDLGDNNISGKIPHSIGQFSELRVLSLRGNNFIGQIPNSLCQLSKMSILDLSNNRFS 762

Query: 64   GSIPSCITNLLFWKVGNGDLYGLVER-----GRDFDLEDIYNYYNSTVPLSLDRSDTRTL 118
            G IP C  N+ F K G  + Y   +       R ++   +     S+     +       
Sbjct: 763  GPIPHCFNNMTFGKRGANEFYAFFQDLIFFFQRHYEYAVLQGPEPSSSMRGRNEDPYLQY 822

Query: 119  DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
            D Q  V F+TK+RY  YKG IL +M+GLDLSSN+LTG I  E+G L +IH LNL HN L 
Sbjct: 823  DPQDEVGFITKSRYSIYKGDILNFMSGLDLSSNDLTGRIPYELGQLNSIHALNLWHNRLI 882

Query: 179  GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPD-KEQFST 236
            GSIP+ FS L  +ESLDLS+N L+G+IP QLT L+ L+ F V++NN S  IPD K QF T
Sbjct: 883  GSIPKDFSKLHQLESLDLSYNSLSGEIPSQLTNLNFLAVFIVAHNNFSGRIPDMKAQFGT 942

Query: 237  FDESSYRGNLNLCCPPINKSCTNL----PELLETSSKGPEDESAVDMVALYWSFVASCVT 292
            FD SSY GN  LC   I + C  +    P +L   S+G   +  +D V    SFVAS +T
Sbjct: 943  FDGSSYDGNPFLCGSMIERKCETVVDQPPTMLYDESEGKWYD--IDPVVFSASFVASYIT 1000

Query: 293  VMLGLLAILWVNPYWRKLWFYFIEECIDLRYY 324
            ++L  +A+L++NPYWR+ WFY IEECI   YY
Sbjct: 1001 ILLVFVALLYINPYWRRRWFYLIEECIYSCYY 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 161/360 (44%), Positives = 215/360 (59%), Gaps = 31/360 (8%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  LDLRDN F G IP  IN  S LR LLL GN L GPIP  +C+L  + IMDLSHN 
Sbjct: 576 TKLTSLDLRDNNFFGNIPQWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNW 635

Query: 62  LNGSIPSCITNLLF-------WKVGNGDL------------YGLVERGRDFDLEDIYN-- 100
           +N +IP CI N+ F         VG   +            YG       F ++DI+   
Sbjct: 636 INETIPPCIKNISFKMVEFQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTP 695

Query: 101 ------YYNSTVPLSLDRSDTRTLDTQVV-VNFMTKNRYESYKGVILEYMAGLDLSSNEL 153
                 +YNS++ L+   +D   +  ++V + F TK+ Y SYKG  L  M GLDLSSN L
Sbjct: 696 GNTFDIFYNSSLSLNHPIADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNL 755

Query: 154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELH 212
           +G I  EIG+LR+I  LNLSHN  SGSIP +F NL  IESLDLS+N L+G +PQ LT L+
Sbjct: 756 SGSIPPEIGELRDIKALNLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALPQNLTNLY 815

Query: 213 SLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPE 272
           SL+ F+VSYN  S  +P   QF+ FDE++YRGN +LC   IN +C +       S+   +
Sbjct: 816 SLAIFNVSYNKFSGRVPTTMQFANFDENNYRGNSDLCGSVINITCNHTSIFPPASTT--Q 873

Query: 273 DESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIY 332
            ++A+DM + YWS VAS VTV++GL  ILWVN +W ++WF +++ CI   +   FK V +
Sbjct: 874 HQTAIDMESFYWSCVASYVTVVIGLAVILWVNSHWCRVWFRYVDLCIFYCFSRCFKNVFH 933

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/337 (45%), Positives = 205/337 (60%), Gaps = 18/337 (5%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  +DLRDN  +G IP  I  HS+L  LLL+ N+  G +P QLC L +LSI+D+S N+
Sbjct: 611 SYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQ 670

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN-YYNSTVPLSLDR-----SDT 115
           L+G +PSC+ NL F +         ++ G    LE +   YY +  P  +D       D 
Sbjct: 671 LSGPLPSCLGNLTFKESSQK---ARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDF 727

Query: 116 RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175
           R   T+ V+ F TKN Y  YKG IL YM+G+DLS+N   G I  E G+L  I  LNLSHN
Sbjct: 728 RLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHN 787

Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQI-PQLTELHSLSKFDVSYNNLSCPIPDKE-Q 233
             + SIP +FSNLK IESLDLS+N LNG I PQLTE+ +L  F V++NNLS   P+++ Q
Sbjct: 788 NPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQ 847

Query: 234 FSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESA----VDMVALYWSFVAS 289
           F TFDES Y GN  LC PP+  +C+  P    +S   P+DE      +DM   Y SF   
Sbjct: 848 FGTFDESCYEGNPFLCGPPLRNNCSVEP---VSSQPVPDDEQGDVGFIDMEFFYISFGVC 904

Query: 290 CVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWL 326
              V++ + A+L++NPYWR+ W YFIE+CID  YY++
Sbjct: 905 YTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFM 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 157/326 (48%), Positives = 202/326 (61%), Gaps = 19/326 (5%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L++LDLR+N FSG+IP+ +++ S LR LLL GN L+G IP QLC+L+K++IMDLS N 
Sbjct: 375 SQLQLLDLRENKFSGKIPHWMDKLSELRVLLLGGNKLEGDIPIQLCRLKKINIMDLSRNM 434

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFD---LEDIYNYYNSTVPL--SLDRSDTR 116
           LN SIPSC  N+ F         G+ +   D D    E   + Y  T+    SL      
Sbjct: 435 LNASIPSCFRNMSF---------GMRQYVDDDDGPTFEFSISGYLPTISFNASLSIQPPW 485

Query: 117 TL---DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS 173
           +L   D Q  V F TK+    YKG +LE M GLDLS N LTG I S+IG L+ +  LNLS
Sbjct: 486 SLFNEDLQFEVEFRTKHYEYFYKGKVLENMTGLDLSWNNLTGLIPSQIGHLQQVRALNLS 545

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE 232
           HN LSG IP +FSNL  IESLDLS+N L+G+IP +LT+L+ LS F+VSYNN S   P   
Sbjct: 546 HNHLSGPIPITFSNLTQIESLDLSYNNLSGKIPNELTQLNFLSTFNVSYNNFSGTPPSTG 605

Query: 233 QFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSK-GPEDESAVDMVALYWSFVASCV 291
           QF  FDE SYRGN  LC P + + C  +     + S    E E+ VDM+  YWSF AS +
Sbjct: 606 QFGGFDEDSYRGNPGLCGPLLYQKCERVESSPSSQSNDNGEKETMVDMITFYWSFTASYI 665

Query: 292 TVMLGLLAILWVNPYWRKLWFYFIEE 317
           T++L  + +L VNP WR  WFY+I +
Sbjct: 666 TILLAFITVLCVNPRWRMAWFYYISK 691

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 157/326 (48%), Positives = 201/326 (61%), Gaps = 19/326 (5%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L++LDLR+N FSG+IP+ +++ S LR LLL GN L+G IP QLC+L+K+ IMDLS N 
Sbjct: 375 SQLQLLDLRENKFSGKIPHWMDKLSELRVLLLGGNKLEGDIPIQLCRLKKIDIMDLSRNM 434

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFD---LEDIYNYYNSTVPL--SLDRSDTR 116
           LN SIPSC  N+ F         G+ +   D D    E   + Y  T+    SL      
Sbjct: 435 LNASIPSCFRNMSF---------GMRQYVDDDDGPTFEFSISGYLPTISFNASLSIQPPW 485

Query: 117 TL---DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS 173
           +L   D Q  V F TK+    YKG +LE M GLDLS N LTG I S+IG L+ +  LNLS
Sbjct: 486 SLFNEDLQFEVEFRTKHYEYFYKGKVLENMTGLDLSWNNLTGLIPSQIGHLQQVRALNLS 545

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE 232
           HN LSG IP +FSNL  IESLDLS+N L+G+IP +LT+L+ LS F+VSYNN S   P   
Sbjct: 546 HNHLSGPIPITFSNLTQIESLDLSYNNLSGKIPNELTQLNFLSTFNVSYNNFSGTPPSTG 605

Query: 233 QFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSK-GPEDESAVDMVALYWSFVASCV 291
           QF  FDE SYRGN  LC P + + C  +     + S    E E+ VDM+  YWSF AS +
Sbjct: 606 QFGGFDEDSYRGNPGLCGPLLYQKCERVESSPSSQSNDNGEKETMVDMITFYWSFTASYI 665

Query: 292 TVMLGLLAILWVNPYWRKLWFYFIEE 317
           T++L  + +L VNP WR  WFY+I +
Sbjct: 666 TILLAFITVLCVNPRWRMAWFYYISK 691

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115344|ref|XP_002332173.1| predicted protein [Populus trichocarpa] gi|222832421|gb|EEE70898.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/332 (47%), Positives = 205/332 (61%), Gaps = 13/332 (3%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S+L I DL DN  +G IP  I+  S L   +LK N   G +P QLC LRKLSI+DLS N+
Sbjct: 215 SSLVIFDLGDNNLTGPIPNWIDSLSELSIFVLKSNQFNGKLPQQLCLLRKLSILDLSENK 274

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFD-LEDIYNYYNSTVPLSLDRSDT-RTLD 119
            +G +PSC++NL F           V   RD +  E+I+    +++   L        +D
Sbjct: 275 FSGLLPSCLSNLNFTASDEKTSVKPVMMSRDAEKREEIF----ASIGFYLQEQTVWPEID 330

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
            ++VV    K  + +Y+G IL YM+ +DLS N  TG+I +E G+L  I  LNLS N L+G
Sbjct: 331 VKIVVELTAKKNFYTYEGDILRYMSAVDLSCNRFTGEIPTEWGNLSGIFALNLSQNNLTG 390

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPD-KEQFSTF 237
            IP SFSNLK IESLDLSHN LNG+IP QL EL+ L+ F+VSYNNLS   P+ K QF+TF
Sbjct: 391 LIPSSFSNLKYIESLDLSHNNLNGRIPAQLVELNFLAVFNVSYNNLSGRTPEMKYQFATF 450

Query: 238 DESSYRGNLNLCCPPINKSC--TNLPEL-LETSSKGPEDESAVDMVALYWSFVASCVTVM 294
           DESSY+GN  LC PP+  SC  T  P   L   S G  D+  +DM + Y SF    + V+
Sbjct: 451 DESSYKGNPLLCGPPLQNSCDKTKSPSARLPNDSNG--DDGLIDMDSFYASFGVFYIIVV 508

Query: 295 LGLLAILWVNPYWRKLWFYFIEECIDLRYYWL 326
           L + A+L +NP+WR+ WFYFIEECID  Y +L
Sbjct: 509 LTIAALLCINPHWRRRWFYFIEECIDTCYCFL 540

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204682|emb|CBI25180.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 158/327 (48%), Positives = 200/327 (61%), Gaps = 36/327 (11%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L  LDL DN  SG+IP+ I + S LR L L+GN   G IP+ LCQL K+SI+DLS+NR +
Sbjct: 142 LLTLDLGDNNISGKIPHSIGQFSELRVLSLRGNNFIGQIPNSLCQLSKMSILDLSNNRFS 201

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV 123
           G IP C  N+ F K           RG + + ED Y  Y                D Q  
Sbjct: 202 GPIPHCFNNMTFGK-----------RGAN-ENEDPYLQY----------------DPQDE 233

Query: 124 VNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE 183
           V F+TK+RY  YKG IL +M+GLDLSSN+LTG I  E+G L +IH LNL HN L GSIP+
Sbjct: 234 VGFITKSRYSIYKGDILNFMSGLDLSSNDLTGRIPYELGQLNSIHALNLWHNRLIGSIPK 293

Query: 184 SFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPD-KEQFSTFDESS 241
            FS L  +ESLDLS+N L+G+IP QLT L+ L+ F V++NN S  IPD K QF TFD SS
Sbjct: 294 DFSKLHQLESLDLSYNSLSGEIPSQLTNLNFLAVFIVAHNNFSGRIPDMKAQFGTFDGSS 353

Query: 242 YRGNLNLCCPPINKSCTNL----PELLETSSKGPEDESAVDMVALYWSFVASCVTVMLGL 297
           Y GN  LC   I + C  +    P +L   S+G   +  +D V    SFVAS +T++L  
Sbjct: 354 YDGNPFLCGSMIERKCETVVDQPPTMLYDESEGKWYD--IDPVVFSASFVASYITILLVF 411

Query: 298 LAILWVNPYWRKLWFYFIEECIDLRYY 324
           +A+L++NPYWR+ WFY IEECI   YY
Sbjct: 412 VALLYINPYWRRRWFYLIEECIYSCYY 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.945	0.290	0.460	1.1e-65
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.939	0.324	0.465	1e-64
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.936	0.343	0.455	6e-64
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.915	0.305	0.458	4.5e-63
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.939	0.351	0.464	3.8e-62
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.939	0.334	0.434	5.4e-60
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.924	0.315	0.436	7.5e-59
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.870	0.357	0.310	1.5e-29
TAIR|locus:2020382	756	RLP3 "AT1G17250" [Arabidopsis	0.732	0.322	0.351	1.6e-29
TAIR|locus:2168907	966	XIP1 "XYLEM INTERMIXED WITH PH	0.837	0.288	0.334	1.4e-27

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 1.1e-65, P = 1.1e-65
 Identities = 152/330 (46%), Positives = 207/330 (62%)

Query:     2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             + LE+LDLR+N FSG+I   I++ S LR LLL+ N  Q  IP ++CQL ++ ++DLSHN+
Sbjct:   744 AGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQ 803

Query:    62 LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDI----YNYYNSTVPLSLDRSDTRT 117
               G IPSC + + F    N     LV    DFD   I    +  Y S + L     +   
Sbjct:   804 FRGPIPSCFSKMSFGAEQNDRTMSLVA---DFDFSYITFLPHCQYGSHLNLDDGVRNGYQ 860

Query:   118 LDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                  VV+F+TK+RYE+Y+G IL YM GLDLSSNEL+G+I  EIGDL+NI  LNLS N L
Sbjct:   861 PKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRL 920

Query:   178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFST 236
             +GSIP+S S LK +ESLDLS+NKL+G IP  L +L+SL   ++SYNNLS  IP K    T
Sbjct:   921 TGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVT 980

Query:   237 FDESSYRGNLNLCCPPINKSCTN--LPE--LLETSSKGPEDE---SAVDMVALYWSFVAS 289
             FDE SY GN +LC  P NK+C +  +PE   + T +K  E+E   + +DMV  YW+  A 
Sbjct:   981 FDERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAV 1040

Query:   290 CVTVMLGLLAILWVNPYWRKLWFYFIEECI 319
              ++  L L A L+++  W + WFY ++ C+
Sbjct:  1041 YISTSLALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 1.0e-64, P = 1.0e-64
 Identities = 154/331 (46%), Positives = 208/331 (62%)

Query:     4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
             +EILDLR+N FSG+IP  IN   N+  LLL+GN   G IPHQLC L  + ++DLS+NRLN
Sbjct:   630 VEILDLRNNRFSGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLN 688

Query:    64 GSIPSCITNLLFW---KVGNGDL-YGLV---ERGRDFDL-EDIYNYYNSTVPL-SLDRSD 114
             G+IPSC++N  F    +  + D  +G+    +    F L +D  +  N  +   SL   D
Sbjct:   689 GTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLD 748

Query:   115 TRTLD----TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGL 170
               ++D    TQ  + F TK+RY++Y G  L+ + G+DLS NEL+G+I  E G L  +  L
Sbjct:   749 PLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRAL 808

Query:   171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229
             NLSHN LSG IP+S S+++ +ES DLS N+L G+IP QLTEL SLS F VS+NNLS  IP
Sbjct:   809 NLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIP 868

Query:   230 DKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPE-DESAVDMVALYWSFVA 288
                QF+TFD  SY GN  LC  P N+SC N     E +  G E DES +DMV+ Y SF A
Sbjct:   869 QGRQFNTFDAESYFGNRLLCGQPTNRSCNN--NSYEEADNGVEADESIIDMVSFYLSFAA 926

Query:   289 SCVTVMLGLLAILWVNPYWRKLWFYFIEECI 319
             + VT+++G+LA L  +  W + WFY ++  I
Sbjct:   927 AYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 149/327 (45%), Positives = 197/327 (60%)

Query:     3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
             +++ILDLR+N  SG IP  ++   ++  LLL+GN L G IP  LC+  K+ ++DLS N+L
Sbjct:   579 SIQILDLRNNKLSGNIPQFVDTQ-DISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKL 637

Query:    63 NGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIY-NYYNSTVPLSLDRSDTRTLDTQ 121
             NG IPSC  NL F      ++           LE  Y  +Y ST  +   R D      +
Sbjct:   638 NGFIPSCFNNLSFGLARKEEITNYYVA---VALESFYLGFYKSTFVVENFRLDYSNY-FE 693

Query:   122 VVVNFMTKNRYESYKGVI------LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175
             + V F TK RY+SY G        L  M GLDLSSNEL+G I +E+GDL  +  LNLSHN
Sbjct:   694 IDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHN 753

Query:   176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQF 234
             FLS  IP+SFS L+ IESLDLS+N L G IP QLT L SL+ F+VSYNNLS  IP  +QF
Sbjct:   754 FLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQF 813

Query:   235 STFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPED--ESAVDMVALYWSFVASCVT 292
             +TFDE+SY GN  LC PP + SC       E ++ G ED  E A+DM+  YWS   + VT
Sbjct:   814 NTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVT 873

Query:   293 VMLGLLAILWVNPYWRKLWFYFIEECI 319
              ++G+L ++ V+  WR+ W   ++  I
Sbjct:   874 ALIGILVLMCVDCSWRRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 4.5e-63, P = 4.5e-63
 Identities = 144/314 (45%), Positives = 194/314 (61%)

Query:     6 ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 65
             +LDLR+N  SG +P  IN   N+  LLL+GN   G IPHQ C L  + ++DLS+N+ NGS
Sbjct:   647 VLDLRNNRLSGNLPEFINTQ-NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGS 705

Query:    66 IPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSD-TRTLDTQVVV 124
             IPSC++N  F      D Y      R    +D   Y+ S   L +D  +     ++Q  +
Sbjct:   706 IPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPV-YFESL--LMIDEFNMVNETNSQTKI 762

Query:   125 NFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPES 184
              F TK+RY++Y G  L+ + G+DLS NEL+G+I  E+G L  +  LNLSHN LSG I ES
Sbjct:   763 EFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILES 822

Query:   185 FSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYR 243
             FS LK +ESLDLS N+L G IP QLT++ SL+ F+VSYNNLS  +P   QF+TF+  SY 
Sbjct:   823 FSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYF 882

Query:   244 GNLNLCCPPINKSCTNLPELLETSSKGPE-DESAVDMVALYWSFVASCVTVMLGLLAILW 302
             GN  LC   I+ SC +       +  G E DES VDM + YWSFVA+ VT++LG+LA L 
Sbjct:   883 GNPLLCGKSIDISCAS--NNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLS 940

Query:   303 VNPYWRKLWFYFIE 316
              +  W + WFY ++
Sbjct:   941 FDSPWSRAWFYIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 150/323 (46%), Positives = 193/323 (59%)

Query:     4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
             L +LDLR+N  SG IP       ++  +LL+ N L G IP +LC L  + ++D +HNRLN
Sbjct:   564 LRLLDLRNNKLSGNIPL-FRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLN 622

Query:    64 GSIPSCITNLLFWKVGNGDLYG-LVERGRDFDLEDIYN--YYNSTVPLSLDR-SDTRTLD 119
              SIPSC+TNL F   G+ +            +  +IY   YY S + +S DR S   ++D
Sbjct:   623 ESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLI-VS-DRFSLDYSVD 680

Query:   120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
               V V F  K RY+ Y    L  M GLDLSSNEL+G+I  E+GDL+ +  LNLS N LSG
Sbjct:   681 FNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSG 740

Query:   180 SIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFD 238
             SIP SFSNL+ IESLDLS NKL+G IP QLT L SL  F+VSYNNLS  IP  +QF+TF 
Sbjct:   741 SIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFG 800

Query:   239 ESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAV-DMVALYWSFVASCVTVMLGL 297
             E SY GN  LC  P  +SC     +        +DES + D+V L+WS   + VTVM+G 
Sbjct:   801 EKSYLGNFLLCGSPTKRSCGGTT-ISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGF 859

Query:   298 LAILWVNPYWRKLWFYFIEECID 320
             L  L  +  WR+ WF  ++  ID
Sbjct:   860 LVFLCFDSPWRRAWFCLVDTFID 882

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 5.4e-60, P = 5.4e-60
 Identities = 142/327 (43%), Positives = 196/327 (59%)

Query:     3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
             +++ILDLR+N  SG IP   ++  ++  LLLKGN L G IP +LC L  + ++DLS N+L
Sbjct:   605 SVQILDLRNNKLSGSIPQ-FDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKL 663

Query:    63 NGSIPSCITNLLFWKVGNGDL-YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
             NG IPSC++NL F ++    +   +        LE     Y ST  +     D  T   +
Sbjct:   664 NGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLE--MELYKSTFLVDKIEVDRSTYQ-E 720

Query:   122 VVVNFMTKNRYESYKGV------ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175
               + F  K RY+SY G       IL  M G+DLS+NEL+G I +E+GDL  +  LNLSHN
Sbjct:   721 TEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHN 780

Query:   176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQL-TELHSLSKFDVSYNNLSCPIPDKEQF 234
              L GSIP SFS L  +ESLDLSHN L G IPQL + L SL+ FDVS NNLS  IP   QF
Sbjct:   781 SLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQF 840

Query:   235 STFDESSYRGNLNLCCPPINKSC-TNL-PELLETSSKGPEDESAVDMVALYWSFVASCVT 292
             +TF+E SY GN  LC PP ++SC TN  PE  +   +  +D++A+DM+  Y+S  +  VT
Sbjct:   841 NTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVT 900

Query:   293 VMLGLLAILWVNPYWRKLWFYFIEECI 319
              ++G+L ++  +  WR+ W   ++  I
Sbjct:   901 ALIGVLVLMCFDCPWRRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 7.5e-59, P = 7.5e-59
 Identities = 142/325 (43%), Positives = 193/325 (59%)

Query:     6 ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 65
             ILDLR+N  SG IP  +N    +  LLL+GN L G IP +LC L  + ++DLS N+LNG 
Sbjct:   650 ILDLRNNKLSGSIPQFVNT-GKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGV 708

Query:    66 IPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN--YYNSTVPLSLDRSDTRTLDTQVV 123
             IP C+ N L  ++G G   GL    ++    D     +Y ST    +D        T ++
Sbjct:   709 IPPCL-NHLSTELGEG--IGLSGFSQEISFGDSLQMEFYRST--FLVDEFMLYYDSTYMI 763

Query:   124 VN--FMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
             V   F  K RY+S+ G  L+YM GLDLSSNEL+G I +E+GDL  +  LNLS N LS SI
Sbjct:   764 VEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSI 823

Query:   182 PESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDES 240
             P +FS LK IESLDLS+N L G IP QLT L SL+ F+VS+NNLS  IP   QF+TF+++
Sbjct:   824 PANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDN 883

Query:   241 SYRGNLNLCCPPINKSCTNLPELLETSSKGPE------DESAVDMVALYWSFVASCVTVM 294
             SY GN  LC  P ++SC       E  + G E      DE+A+DMV LYW+  ++    +
Sbjct:   884 SYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIAL 943

Query:   295 LGLLAILWVNPYWRKLWFYFIEECI 319
             +G+L ++  +  WR+ W   ++  I
Sbjct:   944 IGILVLMCFDCPWRRTWLCIVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 96/309 (31%), Positives = 162/309 (52%)

Query:     7 LDLRDNYFSGRIPYGINE-HSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 65
             LDL DN  SG +   I++  S++  L L+ N L+G IP  +  L  L ++DLS N L+G 
Sbjct:   517 LDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGY 576

Query:    66 IPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVN 125
             +PS + NL    + + +   +  R       DI N       + ++  D  +L    VVN
Sbjct:   577 LPSSLGNLTCM-IKSPEPSAMTIRPYFSSYTDIPNIERL---IEIESEDIFSL----VVN 628

Query:   126 FMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESF 185
             +    +    +   L  +  LDLS N+L G+I + +G+L+++  LNLS+N  SG IP+SF
Sbjct:   629 WKNSKQVLFDRNFYLYTL--LDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSF 686

Query:   186 SNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS-YR 243
              +L+ +ESLDLSHN L G+IP+ L++L  L+  D+  N L   IP+  Q    +  + Y 
Sbjct:   687 GDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLNNPNIYA 746

Query:   244 GNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASCVTVMLG-LLAILW 302
              N  +C   I   C   P   +  ++  E+E   +   ++ S+ A+ +    G L+A+++
Sbjct:   747 NNSGICGMQIQVPC--FPTQTKQPAEEKEEEDKEEEETIF-SWNAAAIGCSCGFLIAVVF 803

Query:   303 VNPYWRKLW 311
             ++  + +LW
Sbjct:   804 MS--YNELW 810

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 92/262 (35%), Positives = 138/262 (52%)

Query:    27 NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVGNGDL 83
             NL+     G+ L+G IP  L +L+ L+++DLSHN+L GSIP  +    +L +  +    L
Sbjct:   476 NLQIFASGGSGLRGEIPAWLIKLKSLAVIDLSHNQLVGSIPGWLGTFPHLFYIDLSENLL 535

Query:    84 YGLVERGRD-FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEY 142
              G  E  +D F L+ + +        + D ++   L   V V+      ++ Y   +   
Sbjct:   536 SG--ELPKDLFQLKALMSQK------AYDATERNYLKLPVFVSPNNVTTHQQYNQ-LFSL 586

Query:   143 MAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 202
               G+ +  N L G I  E+G L+ +H L LSHN+LSG IP   S L  +E LDLS+N L+
Sbjct:   587 PPGIYIRRNNLKGSIPIEVGQLKVLHVLELSHNYLSGIIPHELSKLTSLERLDLSNNHLS 646

Query:   203 GQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSC---T 258
             G+IP  LT LH +S F+V  N+L  PIP   QF TF +++++GN  LC   +  SC   T
Sbjct:   647 GRIPWSLTSLHYMSYFNVVNNSLDGPIPTGSQFDTFPQANFKGNPLLCGGILLTSCKAST 706

Query:   259 NLPELLETSSKGPEDESAVDMV 280
              LP    T+    EDE  +  +
Sbjct:   707 KLPATT-TNKADTEDEEELKFI 727

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2168907 XIP1 "XYLEM INTERMIXED WITH PHLOEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 103/308 (33%), Positives = 153/308 (49%)

Query:     4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
             L+IL L DNY +G +P  +   S + AL +  N L GP+P  +C+  KL    +  NR  
Sbjct:   318 LKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHVCKSGKLLYFLVLQNRFT 377

Query:    64 GSIP----SCITNLLFWKVGNGDLYGLVERG----RDFDLEDI-YNYYNSTVPLSLDRSD 114
             GSIP    SC T L+ ++V +  L G + +G        + D+ YN  +  +P ++  + 
Sbjct:   378 GSIPETYGSCKT-LIRFRVASNRLVGTIPQGVMSLPHVSIIDLAYNSLSGPIPNAIGNA- 435

Query:   115 TRTLDTQVVVNFMTKNRYESYKGVILEY---MAGLDLSSNELTGDISSEIGDLRNIHGLN 171
                    +   FM  NR        L +   +  LDLS+N+L+G I SE+G LR ++ L 
Sbjct:   436 -----WNLSELFMQSNRISGVIPHELSHSTNLVKLDLSNNQLSGPIPSEVGRLRKLNLLV 490

Query:   172 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPD 230
             L  N L  SIP+S SNLK +  LDLS N L G+IP+ L+EL   S  + S N LS PIP 
Sbjct:   491 LQGNHLDSSIPDSLSNLKSLNVLDLSSNLLTGRIPENLSELLPTS-INFSSNRLSGPIPV 549

Query:   231 KEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVASC 290
                     ES +  N NLC PP   S     +L     + P  +  +  +   W+ + S 
Sbjct:   550 SLIRGGLVES-FSDNPNLCIPPTAGSS----DLKFPMCQEPHGKKKLSSI---WAILVSV 601

Query:   291 VTVMLGLL 298
               ++LG++
Sbjct:   602 FILVLGVI 609

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (299), Expect = 1e-29
 Identities = 91/309 (29%), Positives = 144/309 (46%), Gaps = 37/309 (11%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L +LDL  N  +G IP G+    NL  L+L  N L+G IP  L   R L  + L  N  +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 64  GSIPSCITNL---LFWKVGNGDLYGLVERGRDFDLEDI------YNYYNSTVPLSLDRSD 114
           G +PS  T L    F  + N +L G +   R +D+  +       N +   +P S     
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476

Query: 115 TRTLDTQVVVNFMTKNRYE----SYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGL 170
              LD       +++N++        G + E M  L LS N+L+G+I  E+   + +  L
Sbjct: 477 LENLD-------LSRNQFSGAVPRKLGSLSELMQ-LKLSENKLSGEIPDELSSCKKLVSL 528

Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIP 229
           +LSHN LSG IP SFS + ++  LDLS N+L+G+IP+ L  + SL + ++S+N+L   +P
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Query: 230 DKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYWSFVAS 289
               F   + S+  GN++LC                 ++ G      V     +W ++  
Sbjct: 589 STGAFLAINASAVAGNIDLCG--------------GDTTSGLPPCKRVRKTPSWWFYITC 634

Query: 290 CVTVMLGLL 298
            +   L L 
Sbjct: 635 TLGAFLVLA 643

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (262), Expect = 8e-25
 Identities = 78/232 (33%), Positives = 105/232 (45%), Gaps = 50/232 (21%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             LE LDL +N  SG IP  I   S+L+ L L GN L G IP+ L  L  L  + L+ N+
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS---TVPLSLDRSDTRTL 118
           L G IP                    E G+   L+ IY  YN+    +P  +        
Sbjct: 200 LVGQIPR-------------------ELGQMKSLKWIYLGYNNLSGEIPYEIGG------ 234

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                                L  +  LDL  N LTG I S +G+L+N+  L L  N LS
Sbjct: 235 ---------------------LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQLT-ELHSLSKFDVSYNNLSCPIP 229
           G IP S  +L+ + SLDLS N L+G+IP+L  +L +L    +  NN +  IP
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  102 bits (255), Expect = 7e-24
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 23/230 (10%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           LEIL L  N F+G+IP  +     L+ L L  N   G IP  L +   L+++DLS N L 
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD-TQV 122
           G IP                 GL   G  F L    N     +P SL     R+L   ++
Sbjct: 370 GEIPE----------------GLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRL 411

Query: 123 VVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP 182
             N  +      +  + L Y   LD+S+N L G I+S   D+ ++  L+L+ N   G +P
Sbjct: 412 QDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Query: 183 ESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDK 231
           +SF + K +E+LDLS N+ +G +P+ L  L  L +  +S N LS  IPD+
Sbjct: 470 DSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.8 bits (241), Expect = 5e-22
 Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 34/237 (14%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S+L++LDL  N   G+IP  +   ++L  L L  N L G IP +L Q++ L  + L +N 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSL-DRSDTRTLDT 120
           L+G IP  I          G L  L        L+ +YN     +P SL +  + + L  
Sbjct: 224 LSGEIPYEI----------GGLTSLNH------LDLVYNNLTGPIPSSLGNLKNLQYL-- 265

Query: 121 QVVVNFMTKNRYESYKGVI------LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH 174
                F+ +N+     G I      L+ +  LDLS N L+G+I   +  L+N+  L+L  
Sbjct: 266 -----FLYQNKL---SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 175 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPD 230
           N  +G IP + ++L  ++ L L  NK +G+IP+ L + ++L+  D+S NNL+  IP+
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 25/244 (10%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQL-RKLSIMDLSHN 60
           S +  +DL     SG+I   I     ++ + L  N L GPIP  +      L  ++LS+N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 61  RLNGSIPS-CITNLLFWKVGN----GDLY---GLVERGRDFDLEDIYNYYNSTVPLS--- 109
              GSIP   I NL    + N    G++    G     +  DL    N     +P S   
Sbjct: 129 NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG--NVLVGKIPNSLTN 186

Query: 110 LDRSDTRTLDTQVVVNFMTKN--RYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNI 167
           L   +  TL +  +V  + +   + +S K + L Y        N L+G+I  EIG L ++
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY--------NNLSGEIPYEIGGLTSL 238

Query: 168 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSC 226
           + L+L +N L+G IP S  NLK ++ L L  NKL+G IP  +  L  L   D+S N+LS 
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 227 PIPD 230
            IP+
Sbjct: 299 EIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.0 bits (192), Expect = 9e-16
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 55/217 (25%)

Query: 20  YGI--NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI----TNL 73
            GI  N  S + ++ L G  + G I   + +L  +  ++LS+N+L+G IP  I    ++L
Sbjct: 61  QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 74  LFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE 133
            +  + N +  G + RG   +LE                                     
Sbjct: 121 RYLNLSNNNFTGSIPRGSIPNLET------------------------------------ 144

Query: 134 SYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIES 193
                       LDLS+N L+G+I ++IG   ++  L+L  N L G IP S +NL  +E 
Sbjct: 145 ------------LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 194 LDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229
           L L+ N+L GQIP +L ++ SL    + YNNLS  IP
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.2 bits (185), Expect = 6e-15
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204
           GL L +  L G I ++I  LR++  +NLS N + G+IP S  ++  +E LDLS+N  NG 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 205 IPQ-LTELHSLSKFDVSYNNLSCPIP 229
           IP+ L +L SL   +++ N+LS  +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199
           L ++  ++LS N + G+I   +G + ++  L+LS+N  +GSIPES   L  +  L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 200 KLNGQIPQLT---ELHSLSKFDVSYNNLSCPIP 229
            L+G++P       LH  S F+ + N   C IP
Sbjct: 501 SLSGRVPAALGGRLLHRAS-FNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 66
           L L +    G IP  I++  +L+++ L GN ++G IP  L  +  L ++DLS+N  NGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 67  PSCITNL 73
           P  +  L
Sbjct: 483 PESLGQL 489

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 167 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLS 225
           I GL L +  L G IP   S L+ ++S++LS N + G IP  L  + SL   D+SYN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 226 CPIPD 230
             IP+
Sbjct: 480 GSIPE 484

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 27/66 (40%), Positives = 36/66 (54%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  L L +N  SG IP  ++    L +L L  N L G IP    ++  LS +DLS N+
Sbjct: 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Query: 62  LNGSIP 67
           L+G IP
Sbjct: 559 LSGEIP 564

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L+ ++L  N   G IP  +   ++L  L L  N   G IP  L QL  L I++L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 64  GSIPSCITNLL 74
           G +P+ +   L
Sbjct: 504 GRVPAALGGRL 514

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 23/89 (25%)

Query: 3   ALEILDL-----------------------RDNYFSGRIPYGINEHSNLRALLLKGNYLQ 39
           +L++L L                         N FSG +P  +   S L  L L  N L 
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 40  GPIPHQLCQLRKLSIMDLSHNRLNGSIPS 68
           G IP +L   +KL  +DLSHN+L+G IP+
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 146 LDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
           LDLS+N LT  I       L N+  L+LS N L+   PE+FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQL 46
           ++LE+LDL  N F+G IP  + + ++LR L L GN L G +P  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 170 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNL 224
           L+LS+N L+     +F  L  ++ LDLS N L    P+  + L SL   D+S NNL
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDLS N+++ D+  EI  L  +  L+LS+N +   +  S SNLK +  L+LS+NKL    
Sbjct: 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP 248

Query: 206 PQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLE 265
             +  L +L   D+S N +S  I      +   E    GN      P+      L ELL 
Sbjct: 249 ESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Query: 266 TSSK 269
               
Sbjct: 308 NLLL 311

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDLS N++   + S + +L N+  L+LS N LS  +P+  SNL  + +LDLS NK++   
Sbjct: 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 206 PQLTELHSLSKFDVSYNNL 224
           P++  L +L + D+S N++
Sbjct: 203 PEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 103 NSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG 162
              +P SL R  +  L +   ++ +  +         L  +  LDL+ N L  +IS E+ 
Sbjct: 59  LLLLPSSLSRLLSLDLLSPSGISSLDGSENLLN----LLPLPSLDLNLNRLRSNIS-ELL 113

Query: 163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYN 222
           +L N+  L+L +N ++   P        ++ LDLS NK+      L  L +L   D+S+N
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173

Query: 223 NLS 225
           +LS
Sbjct: 174 DLS 176

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  LDL +N  +   P      SNL+ L L  N ++  +P  L  L  L  +DLS N 
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFND 174

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L+  +P  ++NL      +      +   +  DL       ++   L L  +    L + 
Sbjct: 175 LS-DLPKLLSNLSNLNNLD------LSGNKISDLPPEIELLSALEELDLSNNSIIELLSS 227

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
           +                      GL+LS+N+L     S IG+L N+  L+LS+N +S   
Sbjct: 228 L----SNLKNLS-----------GLELSNNKLEDLPES-IGNLSNLETLDLSNNQIS--S 269

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKE 232
             S  +L  +  LDLS N L+  +P +  L  L +  ++       +  K 
Sbjct: 270 ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKL 320

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
PLN03150	623	hypothetical protein; Provisional	99.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.43
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
PLN03150	623	hypothetical protein; Provisional	99.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.32
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.35
PRK15386	426	type III secretion protein GogB; Provisional	97.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.25
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.23
smart00370	26	LRR Leucine-rich repeats, outliers.	95.23
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.7
smart00370	26	LRR Leucine-rich repeats, outliers.	94.7
KOG4308	478	consensus LRR-containing protein [Function unknown	93.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.9
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.12
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.71
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.32
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	88.26
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.92
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.05
KOG4308	478	consensus LRR-containing protein [Function unknown	86.15
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	84.17
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	82.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=3.7e-25  Score=225.15  Aligned_cols=243  Identities=34%  Similarity=0.527  Sum_probs=179.3

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcc---ccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNL---LFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L---~~L~~   78 (333)
                      ++|+.||+++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+   ..|++
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  435 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI  435 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence            467888888888888888888888888888888888887888888888888888888888877777666544   45556


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCc------cccceEEEEeeccccc-cchhh--hhccccEEECC
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRT------LDTQVVVNFMTKNRYE-SYKGV--ILEYMAGLDLS  149 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~--~l~~L~~L~Ls  149 (333)
                      ++|.+.+..........        ....+.+..+.+..      .........+..+.+. ..+..  .+++|+.|+++
T Consensus       436 s~N~l~~~~~~~~~~l~--------~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  507 (968)
T PLN00113        436 SNNNLQGRINSRKWDMP--------SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS  507 (968)
T ss_pred             cCCcccCccChhhccCC--------CCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence            66666553321110000        00001111110000      0011222233333322 11111  16789999999


Q ss_pred             CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccC
Q 039997          150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      +|++.+..|..+.++++|+.|+|++|.+++..|..|+.+++|+.|++++|++++..| .+..+..|+.+++++|++.+.+
T Consensus       508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            999999999999999999999999999999999999999999999999999998888 8899999999999999999999


Q ss_pred             CCCccccccCccccCCCCCCCCCC
Q 039997          229 PDKEQFSTFDESSYRGNLNLCCPP  252 (333)
Q Consensus       229 ~~~~~~~~l~~~~~~~n~~~c~~~  252 (333)
                      |....+..+...++.+|+..|+.+
T Consensus       588 p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        588 PSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcchhcccChhhhcCCccccCCc
Confidence            988888888888899999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=3.3e-23  Score=210.91  Aligned_cols=252  Identities=31%  Similarity=0.447  Sum_probs=169.3

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~   78 (333)
                      ++|++|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++.+..|..+.   +++.|++
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence            4677888888888777777788888888888888888777777777788888888888877766666553   3445555


Q ss_pred             cCCccccccccC-C-CCccccccc--------------ccCCCCCcCCCCCCCCcc-------ccceEEEEeeccccc-c
Q 039997           79 GNGDLYGLVERG-R-DFDLEDIYN--------------YYNSTVPLSLDRSDTRTL-------DTQVVVNFMTKNRYE-S  134 (333)
Q Consensus        79 ~~n~~~~~~~~~-~-~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~  134 (333)
                      .+|.+.+..... . ...+.....              .......+.++.+.+...       ...+....+..+.+. .
T Consensus       388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  467 (968)
T PLN00113        388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG  467 (968)
T ss_pred             cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence            555544321100 0 000000000              000011111111111100       011111222222211 1


Q ss_pred             chhh-hhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC
Q 039997          135 YKGV-ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH  212 (333)
Q Consensus       135 ~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~  212 (333)
                      .+.. ...+|+.|++++|++++..|..|.++++|+.|+|++|++++..|..+..+++|++|++++|.+++..| .+..++
T Consensus       468 ~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  547 (968)
T PLN00113        468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP  547 (968)
T ss_pred             cCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence            1111 14679999999999999999999999999999999999999999999999999999999999999888 899999


Q ss_pred             CCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCCCCC
Q 039997          213 SLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCCPPI  253 (333)
Q Consensus       213 ~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~~~~  253 (333)
                      +|+.|++++|.+++..|.. ..+..+..+++.+|+..+..|.
T Consensus       548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999999999999877754 4566778888888887765443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=4.5e-24  Score=192.09  Aligned_cols=265  Identities=20%  Similarity=0.195  Sum_probs=144.5

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC---CCCChhhhccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN---GSIPSCITNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~---~~~p~~l~~L~~L~~   78 (333)
                      .++++|+|++|+|+...-..|.++.+|.+|.|+.|+|+.+.+.+|..|++|+.|||..|+|.   +...+++.+|++|.+
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            35677777777777777777777777777777777777777777777788888888777765   223455566667777


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccc--hhh-hhccccEEECCCCcccc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESY--KGV-ILEYMAGLDLSSNELTG  155 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~L~~L~Ls~n~l~~  155 (333)
                      ..|++..+.+...+...+........+....+....+..+....+.. +..+.+..+  .++ -.++|+.|||++|+|+.
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~-lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD-LSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc-cchhhhheeecchhhhcccceeEecccccccc
Confidence            77776665544333322221111111111111111111111111111 111111110  011 14556666666666666


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcc---------------------------cCCCC-C
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL---------------------------NGQIP-Q  207 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l---------------------------~~~~~-~  207 (333)
                      ..+..|..+..|+.|+|++|+++.+..++|..+++|+.|||++|.+                           ..+.. +
T Consensus       332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA  411 (873)
T KOG4194|consen  332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA  411 (873)
T ss_pred             CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence            6666666666666666666666555555555555555555555544                           44444 5


Q ss_pred             CCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCC----------------CCCCCCCCCCCcCCCC
Q 039997          208 LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCP----------------PINKSCTNLPELLETS  267 (333)
Q Consensus       208 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~----------------~~~~~c~~~~~~~~~~  267 (333)
                      |.+++.|+.|||.+|++...-+.+..--.++++.+..-.++|+.                .....|.+|+.+.+..
T Consensus       412 fsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~  487 (873)
T KOG4194|consen  412 FSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQS  487 (873)
T ss_pred             hccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccce
Confidence            55566666666666665544443322224455555666667743                2345688888877663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=5.5e-23  Score=177.29  Aligned_cols=248  Identities=17%  Similarity=0.135  Sum_probs=166.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCC-CcCCCCCChhhhccccccc--
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH-NRLNGSIPSCITNLLFWKV--   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~-N~l~~~~p~~l~~L~~L~~--   78 (333)
                      +.-..++|..|.|+.+.|.+|+.+.+|+.||||+|+|+.|.|++|.+|++|..|-+.+ |+|+...-+.|..|..|..  
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4556899999999988899999999999999999999999999999999998887665 9988433334444332222  


Q ss_pred             -------------------------cCCcccccccc-CCCCccc-------cccc------c---cCCCCCcCCCCCCCC
Q 039997           79 -------------------------GNGDLYGLVER-GRDFDLE-------DIYN------Y---YNSTVPLSLDRSDTR  116 (333)
Q Consensus        79 -------------------------~~n~~~~~~~~-~~~~~~~-------~~~~------~---~~~~~~~~~~~~~~~  116 (333)
                                               -+|.+..+... +......       ..+.      +   +....++..+.....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence                                     22222222110 0000000       0000      0   000011111100000


Q ss_pred             ccc--cceEEEEe------------------eccccccchh---hhhccccEEECCCCcccccCCccccCccccceeecc
Q 039997          117 TLD--TQVVVNFM------------------TKNRYESYKG---VILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS  173 (333)
Q Consensus       117 ~~~--~~~~~~~~------------------~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  173 (333)
                      .-.  ........                  ........+.   ..+++|+.|+|++|+++++.+.+|.++..+++|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence            000  00000000                  0000011110   017899999999999999999999999999999999


Q ss_pred             cccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCC
Q 039997          174 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       174 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~  250 (333)
                      +|+|..+....|.++..|+.|+|.+|+|+.+.| .|..+..|..+.+-.|+|.|.|.-++.-.|++.....+++ .|.
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~-~Cq  383 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP-RCQ  383 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC-CCC
Confidence            999998888999999999999999999999999 9999999999999999999999777655666655555554 354

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=5e-23  Score=185.39  Aligned_cols=238  Identities=25%  Similarity=0.260  Sum_probs=156.6

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcccccc---cc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWK---VG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~---~~   79 (333)
                      .|+.||||.|.|+.+...+|..-.++++|+|++|.|+.+..+.|.++.+|..|.|+.|+++...+..|.+|+.|+   +-
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            466677777777755555666666777777777777777777777777777777777777755555555444333   33


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceE-------EEEeeccccccch-hhh--hccccEEECC
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV-------VNFMTKNRYESYK-GVI--LEYMAGLDLS  149 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~--l~~L~~L~Ls  149 (333)
                      .|.+.-+. ...       +....+...+.+.......+....+       ...+.-++..... |+.  +..|+.|+||
T Consensus       230 rN~irive-~lt-------FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  230 RNRIRIVE-GLT-------FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             ccceeeeh-hhh-------hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence            33332210 001       1111122222222222222222111       1122223322222 111  7889999999


Q ss_pred             CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccC
Q 039997          150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      +|.|..+.++.-...++|++|+|+.|+|+...+++|..+..|+.|+|++|+++.+.. .|..+.+|++|||+.|.++..+
T Consensus       302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            999999999888888999999999999999999999999999999999999998888 8889999999999999998665


Q ss_pred             CCC----ccccccCccccCCCCCC
Q 039997          229 PDK----EQFSTFDESSYRGNLNL  248 (333)
Q Consensus       229 ~~~----~~~~~l~~~~~~~n~~~  248 (333)
                      .+.    .-++.++.+.+.||...
T Consensus       382 EDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  382 EDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             ecchhhhccchhhhheeecCceee
Confidence            443    13445566667777543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=1.5e-21  Score=150.74  Aligned_cols=159  Identities=26%  Similarity=0.397  Sum_probs=114.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++++.|-||+|.++ .+|..++.+.+|+.|++++|+|+ ..|.+++.+++|+.|+++-|++. ..|++|++++.      
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~------  103 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA------  103 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch------
Confidence            45677899999999 78889999999999999999998 66778899999999999999998 88888887644      


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc-cCCcc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-DISSE  160 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~  160 (333)
                                                                                   |+.|||++|++.+ ..|+.
T Consensus       104 -------------------------------------------------------------levldltynnl~e~~lpgn  122 (264)
T KOG0617|consen  104 -------------------------------------------------------------LEVLDLTYNNLNENSLPGN  122 (264)
T ss_pred             -------------------------------------------------------------hhhhhccccccccccCCcc
Confidence                                                                         4556666666543 44555


Q ss_pred             ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCC
Q 039997          161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK  231 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  231 (333)
                      |..+..|+.|+|++|.+. ..|...+++++|+.|.+++|.+-.++..++.+..|+.|.+++|+++-..|+.
T Consensus       123 ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  123 FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            666666666666666666 4455566666666666666666544446666666666666666666555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=1.5e-19  Score=164.65  Aligned_cols=250  Identities=24%  Similarity=0.242  Sum_probs=148.6

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~   79 (333)
                      ..|.+||||+|.++ ..|..+..-+++-+|+||+|+|..|+...|-+|.-|-+||||+|++....|+  -+.+|++|.++
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls  181 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS  181 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence            46889999999999 7899999999999999999999988888899999999999999999944443  35677889999


Q ss_pred             CCccccccc--cCCCCccccccc----ccCCCCCcCCCC-----------CCCCccc------cceEEEEeeccccccch
Q 039997           80 NGDLYGLVE--RGRDFDLEDIYN----YYNSTVPLSLDR-----------SDTRTLD------TQVVVNFMTKNRYESYK  136 (333)
Q Consensus        80 ~n~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~-----------~~~~~~~------~~~~~~~~~~~~~~~~~  136 (333)
                      +|.+.+..-  .+....+...-.    ....+.|.+++.           ..+..+.      ..+....++.+.+..+.
T Consensus       182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~  261 (1255)
T KOG0444|consen  182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN  261 (1255)
T ss_pred             CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee
Confidence            998755311  111111111100    011111222211           1111000      00001111222222222


Q ss_pred             hhh--hccccEEECCCCcccccCCccccCccccceeecccccCCC-CchHHHhCCCCCCEEeccCCcccCCCCCCCCCCC
Q 039997          137 GVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHS  213 (333)
Q Consensus       137 ~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~  213 (333)
                      ...  -.+|++|++|.|+++ ..|.+++.++.|+.|++.+|+++- -+|..++++.+|+.+..++|.+.-++..++....
T Consensus       262 ~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~k  340 (1255)
T KOG0444|consen  262 MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVK  340 (1255)
T ss_pred             ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHH
Confidence            111  234444555555554 455555556666666666665541 1345555666666666666665544446666677


Q ss_pred             CCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997          214 LSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI  253 (333)
Q Consensus       214 L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  253 (333)
                      |+.|.++.|++...+.....+..++.+++..|+.+.-+|.
T Consensus       341 L~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  341 LQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             HHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            7777777777765544445667777888888888776553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.74  E-value=3.2e-19  Score=154.17  Aligned_cols=241  Identities=19%  Similarity=0.187  Sum_probs=157.7

Q ss_pred             EECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---cccc-cCCc
Q 039997            7 LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FWKV-GNGD   82 (333)
Q Consensus         7 L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L~~-~~n~   82 (333)
                      .|-++-+++ .+|..+-  +....++|..|+|+.+.|++|+.+++|+.|||++|.|+..-|++|..|.   .|.+ .+|+
T Consensus        51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            455666666 5676665  5778899999999999999999999999999999999988898887766   3333 5588


Q ss_pred             cccccccCCCCcccccccccCCC----------------CCcCCCCCCCCccccceE-------EEEeeccc------cc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNST----------------VPLSLDRSDTRTLDTQVV-------VNFMTKNR------YE  133 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~~  133 (333)
                      ++.++...............+..                ..+++....+.......+       ......+.      +.
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            87765433322222111111111                001111111100000000       00000110      00


Q ss_pred             -----------cchhhh--------------------hccccEE---ECCCCcccccCC-ccccCccccceeecccccCC
Q 039997          134 -----------SYKGVI--------------------LEYMAGL---DLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLS  178 (333)
Q Consensus       134 -----------~~~~~~--------------------l~~L~~L---~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  178 (333)
                                 ++.|..                    ...++.+   ..+.+...++.| ..|..+++|++|+|++|+|+
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                       011100                    1111111   112222333444 56889999999999999999


Q ss_pred             CCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCC
Q 039997          179 GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       179 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~  250 (333)
                      .+.+.+|++..+++.|.|..|++..+.. +|.++..|+.|+|.+|++++.-|.. .....+.++.+-+||+.|+
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            9999999999999999999999998888 9999999999999999999987765 2444566777889999995

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=3.6e-18  Score=155.71  Aligned_cols=102  Identities=25%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEc
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDV  219 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l  219 (333)
                      +.+|..+|+|.|++. ..|+.+.++++|+.|+||+|+|+ ......+...+|+.|++|+|+++.++..++.+++|+.|.+
T Consensus       221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence            667777888888887 77778888888888888888887 3344455667778888888888865557777888888888


Q ss_pred             ccCcCc--ccCCCCccccccCccccC
Q 039997          220 SYNNLS--CPIPDKEQFSTFDESSYR  243 (333)
Q Consensus       220 ~~N~l~--~~~~~~~~~~~l~~~~~~  243 (333)
                      .+|.++  |.+...+.+..+......
T Consensus       299 n~NkL~FeGiPSGIGKL~~Levf~aa  324 (1255)
T KOG0444|consen  299 NNNKLTFEGIPSGIGKLIQLEVFHAA  324 (1255)
T ss_pred             ccCcccccCCccchhhhhhhHHHHhh
Confidence            777654  554444455444444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.66  E-value=2.1e-18  Score=149.50  Aligned_cols=236  Identities=23%  Similarity=0.248  Sum_probs=141.8

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcc---cccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNL---LFWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L---~~L~~~   79 (333)
                      .|.+|++.+|.++ ..|.+++.+..++.++.++|+++ ..|+.+..+.+|..|+.++|++. ..|+.++.+   ..++-.
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence            3556666666666 56666666666666777777666 55556666667777777777666 444444332   233334


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--hccccEEECCCCcccccC
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--LEYMAGLDLSSNELTGDI  157 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~  157 (333)
                      +|.+...++......... .....+.....+......  -..++..+...+.+..++...  +.+|+.|+|..|++. ..
T Consensus       146 ~N~i~slp~~~~~~~~l~-~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLS-KLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             ccccccCchHHHHHHHHH-HhhccccchhhCCHHHHH--HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cC
Confidence            444444332221110000 000000000000000000  000111112223333333322  677888888888888 55


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF  237 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l  237 (333)
                      | .|.++..|++++++.|+|.-.+.+...+++++.+|||++|+++..+..++-+.+|+.||+++|.+++..+..... ++
T Consensus       222 P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  222 P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HL  299 (565)
T ss_pred             C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-ee
Confidence            5 688888899999999998855556666889999999999999987778888888999999999999887777666 77


Q ss_pred             CccccCCCCC
Q 039997          238 DESSYRGNLN  247 (333)
Q Consensus       238 ~~~~~~~n~~  247 (333)
                      +.+.+.|||.
T Consensus       300 ~~L~leGNPl  309 (565)
T KOG0472|consen  300 KFLALEGNPL  309 (565)
T ss_pred             eehhhcCCch
Confidence            7777778864

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=9.7e-18  Score=158.71  Aligned_cols=239  Identities=24%  Similarity=0.291  Sum_probs=117.6

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh---hhhccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS---CITNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~---~l~~L~~L~~   78 (333)
                      .+|+++|+|+|.++ .+|+.+..+.+|+.++..+|++. ..|.......+|+.|+..+|.+. .+|+   .+..++.|++
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            45667777777776 45566666667777776666664 44444444444555555555444 2222   2334445555


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccc-----cccchhhhhccccEEECCCCcc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR-----YESYKGVILEYMAGLDLSSNEL  153 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l  153 (333)
                      ..|.+...++..............+....+....+.-......++...+..+.     +..+.+  ...|+.|+|++|++
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYNRL  395 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc--ccceeeeeeccccc
Confidence            55544443331111000000001111111100000000000000000011111     111111  56677777777777


Q ss_pred             cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC-CCCc
Q 039997          154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI-PDKE  232 (333)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~  232 (333)
                      ...+...+.++..|++|+||+|+++ .+|.....++.|++|...+|++...+ .+..+++|+.+|++.|.++... +...
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            7666666777777777777777777 44566666666666666666666433 5556666777777766665332 2222


Q ss_pred             cccccCccccCCCCC
Q 039997          233 QFSTFDESSYRGNLN  247 (333)
Q Consensus       233 ~~~~l~~~~~~~n~~  247 (333)
                      ..+.++.+++.||.+
T Consensus       474 p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCcccceeeccCCcc
Confidence            225566666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=1.7e-15  Score=146.50  Aligned_cols=81  Identities=25%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS  220 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~  220 (333)
                      .+|+.|++++|+++++ |..   .++|+.|++++|+++++ |..   ..+|+.|++++|.++.++..+..+++|+.++++
T Consensus       382 ~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        382 SGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence            4577777777777743 322   25677888888888753 332   245777888888888655477788888888999


Q ss_pred             cCcCcccCC
Q 039997          221 YNNLSCPIP  229 (333)
Q Consensus       221 ~N~l~~~~~  229 (333)
                      +|++++..+
T Consensus       454 ~N~Ls~~~~  462 (788)
T PRK15387        454 GNPLSERTL  462 (788)
T ss_pred             CCCCCchHH
Confidence            888886644

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=3.1e-17  Score=126.88  Aligned_cols=162  Identities=24%  Similarity=0.399  Sum_probs=138.9

Q ss_pred             ccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccc
Q 039997           22 INEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNY  101 (333)
Q Consensus        22 ~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~  101 (333)
                      +..+.+++.|.||+|+++ ..|..+..|.+|+.|++++|+|+ .+|..+.+                             
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-----------------------------   77 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-----------------------------   77 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-----------------------------
Confidence            345688899999999999 55566899999999999999998 67766655                             


Q ss_pred             cCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCC-C
Q 039997          102 YNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG-S  180 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~  180 (333)
                                                            ++.|+.|+++-|++. ..|..|+.+|.|+.|||+.|.+.. .
T Consensus        78 --------------------------------------l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~  118 (264)
T KOG0617|consen   78 --------------------------------------LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENS  118 (264)
T ss_pred             --------------------------------------chhhhheecchhhhh-cCccccCCCchhhhhhcccccccccc
Confidence                                                  466788999999998 889999999999999999999974 4


Q ss_pred             chHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997          181 IPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI  253 (333)
Q Consensus       181 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  253 (333)
                      .|+.|..|+.|+.|.|++|.+..+++.++.+.+|+.|.++.|.+-....+...+..++++...||....-+|+
T Consensus       119 lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  119 LPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             CCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence            7888889999999999999999888899999999999999999876666667788888889999976655554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=2e-15  Score=146.65  Aligned_cols=79  Identities=23%  Similarity=0.353  Sum_probs=43.5

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh-hccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI-TNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l-~~L~~L~~~~   80 (333)
                      ++|+.|+|++|.|+ .+|..+.  ++|++|++++|+++.+ |..+.  .+|+.|++++|.+. .+|..+ .+|+.|++++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcC
Confidence            45667777777776 3454443  4666677776666633 33332  35666666666655 334333 2455555555


Q ss_pred             Ccccccc
Q 039997           81 GDLYGLV   87 (333)
Q Consensus        81 n~~~~~~   87 (333)
                      |++..++
T Consensus       272 N~L~~LP  278 (754)
T PRK15370        272 NKISCLP  278 (754)
T ss_pred             CccCccc
Confidence            5555443

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=4.9e-15  Score=142.84  Aligned_cols=117  Identities=34%  Similarity=0.578  Sum_probs=103.8

Q ss_pred             cccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcc
Q 039997          142 YMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVS  220 (333)
Q Consensus       142 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~  220 (333)
                      .++.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++..| .+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999888 89999999999999


Q ss_pred             cCcCcccCCCCc--cccccCccccCCCCCCCCCCCCCCCC
Q 039997          221 YNNLSCPIPDKE--QFSTFDESSYRGNLNLCCPPINKSCT  258 (333)
Q Consensus       221 ~N~l~~~~~~~~--~~~~l~~~~~~~n~~~c~~~~~~~c~  258 (333)
                      +|.++|..|...  ........++.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999888642  22334566788999999887767775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=2.2e-14  Score=138.84  Aligned_cols=101  Identities=20%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHh-----------------CCCCCCEEeccCCcccC
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFS-----------------NLKMIESLDLSHNKLNG  203 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------~l~~L~~L~L~~N~l~~  203 (333)
                      .+|+.|+|++|+|++++ ..   .++|+.|++++|+|+.+ |....                 ..++|+.|++++|+++.
T Consensus       342 ~~Lq~LdLS~N~Ls~LP-~l---p~~L~~L~Ls~N~L~~L-P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        342 SGLQELSVSDNQLASLP-TL---PSELYKLWAYNNRLTSL-PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS  416 (788)
T ss_pred             cccceEecCCCccCCCC-CC---CcccceehhhccccccC-cccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC
Confidence            46777777777777433 22   12344444444444422 21110                 12344455555555544


Q ss_pred             CCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCC
Q 039997          204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLC  249 (333)
Q Consensus       204 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c  249 (333)
                      ++..   ..+|+.|++++|.++..+.....+..+..+++.+|+...
T Consensus       417 IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        417 LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence            3221   124555566666655322222344556666777777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.57  E-value=1.1e-16  Score=139.08  Aligned_cols=193  Identities=24%  Similarity=0.292  Sum_probs=121.6

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC--
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN--   80 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~--   80 (333)
                      +|+.++.++|.+. ..|+.++.+-.++.++..+|+|+ -.|+.+..+.+|..|++.+|++....|. .-+|+.|...+  
T Consensus       115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~  191 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCN  191 (565)
T ss_pred             hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccc
Confidence            4556666666666 45666666666666666666666 4444555666666666666666533332 22243333322  


Q ss_pred             -CccccccccCCC-CcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997           81 -GDLYGLVERGRD-FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        81 -n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                       |.+..+++.... ..+...+..          ..+..              ...+|+|  ...|..|+++.|.|...+.
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~----------~Nki~--------------~lPef~g--cs~L~Elh~g~N~i~~lpa  245 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLR----------RNKIR--------------FLPEFPG--CSLLKELHVGENQIEMLPA  245 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhh----------hcccc--------------cCCCCCc--cHHHHHHHhcccHHHhhHH
Confidence             222221111000 000000000          00000              0123333  5678889999999996555


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  226 (333)
                      +...+++++..|||..|+++ ..|+.+-.+.+|..||+|+|.|++.++.++++ .|+.|-+.|||+..
T Consensus       246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence            66679999999999999999 55666778899999999999999988899999 99999999999863

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.56  E-value=1.1e-14  Score=141.47  Aligned_cols=204  Identities=20%  Similarity=0.256  Sum_probs=131.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh-hccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI-TNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l-~~L~~L~~~~   80 (333)
                      ++|++|++++|.++ .+|..+.  .+|+.|+|++|+++. +|..+.  .+|+.|++++|+++ .+|..+ .+|+.|++++
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~  292 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYD  292 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCC
Confidence            47899999999998 5676654  579999999999984 455553  58999999999998 566544 4788999999


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE  160 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  160 (333)
                      |.+..++..... .+.......+....  +...    ....+....+..+.+..+++...++|+.|++++|+++. .|..
T Consensus       293 N~Lt~LP~~lp~-sL~~L~Ls~N~Lt~--LP~~----l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~-LP~~  364 (754)
T PRK15370        293 NSIRTLPAHLPS-GITHLNVQSNSLTA--LPET----LPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITV-LPET  364 (754)
T ss_pred             CccccCcccchh-hHHHHHhcCCcccc--CCcc----ccccceeccccCCccccCChhhcCcccEEECCCCCCCc-CChh
Confidence            988876542221 11111111111110  0000    01122223334445555555556778888888888874 4443


Q ss_pred             ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCC----CCCCCCCCEEEcccCcCc
Q 039997          161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ----LTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~l~~N~l~  225 (333)
                      +  .++|+.|+|++|+++.+++ .+.  .+|+.|++++|+++.++..    ....+.+..+++.+|+++
T Consensus       365 l--p~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        365 L--PPTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             h--cCCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            3  2578888888888885543 332  3578888888888765433    233467788888888886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.51  E-value=2.6e-15  Score=142.55  Aligned_cols=216  Identities=26%  Similarity=0.303  Sum_probs=158.6

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc-----cccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN-----LLFW   76 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~-----L~~L   76 (333)
                      .+|+.++..+|.++ .+|..+....+|+.|+...|.++ -+|....+++.|++|||..|++. ..|+.+-.     +..|
T Consensus       264 ~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~l  340 (1081)
T KOG0618|consen  264 ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTL  340 (1081)
T ss_pred             ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHH
Confidence            57899999999997 78889999999999999999999 45556778999999999999998 55554322     2334


Q ss_pred             cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh---hccccEEECCCCcc
Q 039997           77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI---LEYMAGLDLSSNEL  153 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~L~~L~Ls~n~l  153 (333)
                      +.+.|++...+.... .........+-..+.+.-+.-....-..++.+..+..+++..|+...   ++.|+.|+||||++
T Consensus       341 n~s~n~l~~lp~~~e-~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  341 NVSSNKLSTLPSYEE-NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             hhhhccccccccccc-hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence            444444444331111 11111222222222222222223344566778888889888888766   67788999999999


Q ss_pred             cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcC
Q 039997          154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNL  224 (333)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l  224 (333)
                      + -+|+....++.|+.|...+|+|. ..| .+..++.|+.+|++.|.++...- .....++|++||++||..
T Consensus       420 ~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  420 T-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             h-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            9 56688999999999999999999 556 78899999999999999987554 444558999999999984

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.43  E-value=5.3e-15  Score=133.78  Aligned_cols=170  Identities=31%  Similarity=0.487  Sum_probs=142.6

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc--cccccccCCc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN--LLFWKVGNGD   82 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~--L~~L~~~~n~   82 (333)
                      ...||+.|++. .+|..+..+..|+.+.|..|.|. .+|.+...|..|++|||+.|+++ .+|..+..  |+.|-+++|+
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNK  154 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCc
Confidence            35799999999 89999999999999999999999 78888999999999999999998 77776554  5577778888


Q ss_pred             cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  162 (333)
                      +..+++....                                               ...|..||.+.|.+. ..|..++
T Consensus       155 l~~lp~~ig~-----------------------------------------------~~tl~~ld~s~nei~-slpsql~  186 (722)
T KOG0532|consen  155 LTSLPEEIGL-----------------------------------------------LPTLAHLDVSKNEIQ-SLPSQLG  186 (722)
T ss_pred             cccCCccccc-----------------------------------------------chhHHHhhhhhhhhh-hchHHhh
Confidence            8765432221                                               467888999999998 6667788


Q ss_pred             CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      ++.+|+.|++..|++... |..+..|+ |..||+|.|+++.++-.|.++..|++|-|.+||+.-.
T Consensus       187 ~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence            999999999999999955 45566777 9999999999997666999999999999999999844

>PLN03210 Resistant to P

Probab=99.43  E-value=1.7e-12  Score=133.81  Aligned_cols=80  Identities=23%  Similarity=0.278  Sum_probs=55.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh--hhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC--ITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~--l~~L~~L~~~   79 (333)
                      ++|+.|+|+++.....+| .+..+++|++|+|++|..-...|..+..+++|+.|++++|..-..+|..  +.+|+.|.+.
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Ls  712 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLS  712 (1153)
T ss_pred             CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCC
Confidence            578888998875433555 4777888899998887655567788888888888888886433355543  3455555555


Q ss_pred             CCc
Q 039997           80 NGD   82 (333)
Q Consensus        80 ~n~   82 (333)
                      ++.
T Consensus       713 gc~  715 (1153)
T PLN03210        713 GCS  715 (1153)
T ss_pred             CCC
Confidence            543

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=99.39  E-value=1.9e-12  Score=124.99  Aligned_cols=91  Identities=33%  Similarity=0.581  Sum_probs=81.7

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC-CCCCEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL-HSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l-~~L~~L  217 (333)
                      +.+|+.|+|++|.+.+..|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|.+++..| .+... .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            4678999999999999999999999999999999999999999999999999999999999999888 66553 467899


Q ss_pred             EcccCcCcccCCC
Q 039997          218 DVSYNNLSCPIPD  230 (333)
Q Consensus       218 ~l~~N~l~~~~~~  230 (333)
                      ++.+|+..|.+|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999998876543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.39  E-value=4.4e-13  Score=107.43  Aligned_cols=139  Identities=29%  Similarity=0.362  Sum_probs=48.7

Q ss_pred             ECCCCcCCCCCCccccCCcccceeeccccccccccchhhc-CCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccc
Q 039997            8 DLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGL   86 (333)
Q Consensus         8 ~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~-~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~   86 (333)
                      .|+.+.|. ..+ .+.+...+++|+|++|+|+.+.  .+. .+.+|+.||+++|.|+. ++ ++..              
T Consensus         3 ~lt~~~i~-~~~-~~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~--------------   62 (175)
T PF14580_consen    3 RLTANMIE-QIA-QYNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPG--------------   62 (175)
T ss_dssp             -------------------------------------S--TT-TT--EEE-TTS--S---T-T-----------------
T ss_pred             cccccccc-ccc-cccccccccccccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccC--------------
Confidence            34555555 222 2344456888999999988553  244 57888999999998872 21 1111              


Q ss_pred             cccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccc
Q 039997           87 VERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRN  166 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  166 (333)
                                                                           ++.|++|++++|+|+.+.+.....+++
T Consensus        63 -----------------------------------------------------L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   63 -----------------------------------------------------LPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ------------------------------------------------------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             -----------------------------------------------------hhhhhhcccCCCCCCccccchHHhCCc
Confidence                                                                 466888899999888543322246788


Q ss_pred             cceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCCCC----CCCCCCCCCEEEc
Q 039997          167 IHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFDV  219 (333)
Q Consensus       167 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~l  219 (333)
                      |++|++++|+|..... ..++.+++|+.|++.+|.++....    .+..+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999999998875422 457778889999999998875543    3567788888874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=7.2e-14  Score=124.75  Aligned_cols=84  Identities=24%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             CcccEEECCCCcCCC------CCCccccCCcccceeeccccccccccchhhcCCCC---CCEEeCCCCcCCC----CCCh
Q 039997            2 SALEILDLRDNYFSG------RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRK---LSIMDLSHNRLNG----SIPS   68 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~---L~~LdLs~N~l~~----~~p~   68 (333)
                      +++++++++++.+.+      .++..+..+++|+.|++++|.+....+..+..+.+   |++|++++|+++.    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            457888888887762      12345666778888888888887666666666655   8888888888762    1112


Q ss_pred             hh----hccccccccCCcccc
Q 039997           69 CI----TNLLFWKVGNGDLYG   85 (333)
Q Consensus        69 ~l----~~L~~L~~~~n~~~~   85 (333)
                      .+    .+++.|++.+|.+.+
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~  151 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEG  151 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCc
Confidence            22    455777777777663

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=8.9e-14  Score=124.17  Aligned_cols=184  Identities=24%  Similarity=0.252  Sum_probs=127.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcc---cceeecccccccc----ccchhhcCC-CCCCEEeCCCCcCCCCC----Chh
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSN---LRALLLKGNYLQG----PIPHQLCQL-RKLSIMDLSHNRLNGSI----PSC   69 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~---L~~L~L~~N~i~~----~~~~~f~~L-~~L~~LdLs~N~l~~~~----p~~   69 (333)
                      ++|+.|++++|.+.+..+..+..+.+   |++|++++|++++    .....+..+ ++|+.|++++|.+++..    +..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            58999999999998666666666666   9999999999873    233456677 99999999999998432    223


Q ss_pred             hh---ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEE
Q 039997           70 IT---NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGL  146 (333)
Q Consensus        70 l~---~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  146 (333)
                      +.   .++.|++.+|.+.+..  ...     ...                                 .+.  ..++|+.|
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~--~~~-----l~~---------------------------------~l~--~~~~L~~L  198 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAG--IRA-----LAE---------------------------------GLK--ANCNLEVL  198 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHH--HHH-----HHH---------------------------------HHH--hCCCCCEE
Confidence            33   5778888777765410  000     000                                 000  03578999


Q ss_pred             ECCCCcccccC----CccccCccccceeecccccCCCCchHHHh-C----CCCCCEEeccCCcccC--CC---CCCCCCC
Q 039997          147 DLSSNELTGDI----SSEIGDLRNIHGLNLSHNFLSGSIPESFS-N----LKMIESLDLSHNKLNG--QI---PQLTELH  212 (333)
Q Consensus       147 ~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~----l~~L~~L~L~~N~l~~--~~---~~~~~l~  212 (333)
                      ++++|.+++..    ...+..+++|+.|++++|.++......+. .    .+.|+.|++++|.++.  ..   ..+..++
T Consensus       199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~  278 (319)
T cd00116         199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE  278 (319)
T ss_pred             eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence            99999887433    34556778899999999998853333222 2    3789999999998862  11   1455568


Q ss_pred             CCCEEEcccCcCccc
Q 039997          213 SLSKFDVSYNNLSCP  227 (333)
Q Consensus       213 ~L~~L~l~~N~l~~~  227 (333)
                      +|+.+++++|.+...
T Consensus       279 ~L~~l~l~~N~l~~~  293 (319)
T cd00116         279 SLLELDLRGNKFGEE  293 (319)
T ss_pred             CccEEECCCCCCcHH
Confidence            899999999998733

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.34  E-value=2.2e-11  Score=125.70  Aligned_cols=80  Identities=21%  Similarity=0.209  Sum_probs=54.0

Q ss_pred             ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccC
Q 039997          164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYR  243 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~  243 (333)
                      .++|+.|++++|......|..++.+++|+.|++++|..-...|....+++|+.|++++|......|..  ...+..+.+.
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls  854 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLS  854 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECC
Confidence            46788899998876667888899999999999998754333442236888999999987543333322  2234444454


Q ss_pred             CC
Q 039997          244 GN  245 (333)
Q Consensus       244 ~n  245 (333)
                      +|
T Consensus       855 ~n  856 (1153)
T PLN03210        855 RT  856 (1153)
T ss_pred             CC
Confidence            44

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.32  E-value=5.4e-13  Score=106.90  Aligned_cols=86  Identities=28%  Similarity=0.288  Sum_probs=41.7

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L  217 (333)
                      +.+|+.||+++|.|+.+.  .+..+++|+.|++++|+|+.+.+.....+++|+.|++++|+|.....  .+..+++|+.|
T Consensus        41 l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            456888999999998543  47778899999999999986544433468899999999999987666  67788999999


Q ss_pred             EcccCcCccc
Q 039997          218 DVSYNNLSCP  227 (333)
Q Consensus       218 ~l~~N~l~~~  227 (333)
                      ++.+||++..
T Consensus       119 ~L~~NPv~~~  128 (175)
T PF14580_consen  119 SLEGNPVCEK  128 (175)
T ss_dssp             E-TT-GGGGS
T ss_pred             eccCCcccch
Confidence            9999998643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.29  E-value=3.2e-13  Score=113.68  Aligned_cols=131  Identities=28%  Similarity=0.309  Sum_probs=107.3

Q ss_pred             CcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccCC
Q 039997           25 HSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS  104 (333)
Q Consensus        25 l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~  104 (333)
                      -..|+++|||+|.|+ .+.+++.-+++++.|++|+|+|...     ++|..                             
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nLa~-----------------------------  327 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNLAE-----------------------------  327 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhhhh-----------------------------
Confidence            367889999999998 5556778889999999999998721     11111                             


Q ss_pred             CCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHH
Q 039997          105 TVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPES  184 (333)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  184 (333)
                                                         +.+|+.||||+|.++ ...++...+.+++.|.|++|.|...  ..
T Consensus       328 -----------------------------------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SG  369 (490)
T KOG1259|consen  328 -----------------------------------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SG  369 (490)
T ss_pred             -----------------------------------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hh
Confidence                                               577899999999998 4556667888999999999999854  34


Q ss_pred             HhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCcccC
Q 039997          185 FSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       185 ~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      +.++-+|..||+++|+|..+..  .++++|-|+.+.+.+||+.+..
T Consensus       370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            7788889999999999988766  8999999999999999998765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=5.4e-12  Score=116.16  Aligned_cols=175  Identities=34%  Similarity=0.474  Sum_probs=125.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCc-ccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHS-NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~   78 (333)
                      +.++.|++.+|.++ .++.....+. +|+.|++++|++. ..|.....+++|+.|++++|+++...+.  ....+..|.+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            35778888888888 5565666664 8888888888888 4445578888888889988888833332  5566777777


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      ++|.+..++....                                               ....|++|++++|.+. ..+
T Consensus       194 s~N~i~~l~~~~~-----------------------------------------------~~~~L~~l~~~~N~~~-~~~  225 (394)
T COG4886         194 SGNKISDLPPEIE-----------------------------------------------LLSALEELDLSNNSII-ELL  225 (394)
T ss_pred             cCCccccCchhhh-----------------------------------------------hhhhhhhhhhcCCcce-ecc
Confidence            7777766432210                                               1344777888888544 445


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      ..+..+.++..+.+++|++.. .+..++.+++++.|++++|.++.+.. +..+..++.+++++|.+....
T Consensus       226 ~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         226 SSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             hhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence            567777888888888888773 35667777888888888888886665 777788888888888776443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.27  E-value=2.9e-12  Score=84.82  Aligned_cols=61  Identities=34%  Similarity=0.449  Sum_probs=57.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL   62 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l   62 (333)
                      ++|++|++++|.|+.+.+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5899999999999987778999999999999999999999999999999999999999985

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.18  E-value=1.2e-11  Score=81.82  Aligned_cols=61  Identities=41%  Similarity=0.561  Sum_probs=52.7

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL  201 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  201 (333)
                      ++|+.|++++|+++.+.+..|.++++|++|++++|+++.+.+.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3578889999999888888889999999999999999888888888999999999988875

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.17  E-value=2.6e-12  Score=108.26  Aligned_cols=131  Identities=28%  Similarity=0.368  Sum_probs=102.2

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGD   82 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~   82 (333)
                      .|+++|||+|.|+ .+..+..-+|.++.|++|+|.|..+.  .+..|.+|+.||||+|.++.. ..+-.           
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~-----------  349 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHL-----------  349 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHh-----------
Confidence            5789999999999 67777777899999999999998444  388999999999999998722 11100           


Q ss_pred             cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  162 (333)
                                                                              .+.+.++|.|++|.|..  -..+.
T Consensus       350 --------------------------------------------------------KLGNIKtL~La~N~iE~--LSGL~  371 (490)
T KOG1259|consen  350 --------------------------------------------------------KLGNIKTLKLAQNKIET--LSGLR  371 (490)
T ss_pred             --------------------------------------------------------hhcCEeeeehhhhhHhh--hhhhH
Confidence                                                                    04667788899988863  23466


Q ss_pred             CccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcccCCCC
Q 039997          163 DLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP  206 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~  206 (333)
                      .+-+|..||+++|+|.... -..++++|.|+++.|.+|.+.+...
T Consensus       372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            7778899999999988542 2467888999999999999887655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.3e-11  Score=108.84  Aligned_cols=205  Identities=22%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             CcccEEECCCCcCCCCCC-ccccCCcccceeecccccccccc--chhhcCCCCCCEEeCCCCcCCCCC----Chhhhccc
Q 039997            2 SALEILDLRDNYFSGRIP-YGINEHSNLRALLLKGNYLQGPI--PHQLCQLRKLSIMDLSHNRLNGSI----PSCITNLL   74 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~--~~~f~~L~~L~~LdLs~N~l~~~~----p~~l~~L~   74 (333)
                      ++|++..|.+..+..... .....+++++.||||.|-+....  -.....|++|+.|+++.|++....    -..+..++
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            357777888877762221 35667889999999999886433  345678899999999999876322    23456666


Q ss_pred             cccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccc
Q 039997           75 FWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT  154 (333)
Q Consensus        75 ~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  154 (333)
                      .|.+..+.+..-.-       ......+.+...+.+....              .......+..++..|+.|||++|++-
T Consensus       201 ~L~l~~CGls~k~V-------~~~~~~fPsl~~L~L~~N~--------------~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDV-------QWILLTFPSLEVLYLEANE--------------IILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             eEEeccCCCCHHHH-------HHHHHhCCcHHHhhhhccc--------------ccceecchhhhhhHHhhccccCCccc
Confidence            77666555432000       0000000000000000000              00011122223677888888888776


Q ss_pred             ccC-CccccCccccceeecccccCCCCch-HH-----HhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCc
Q 039997          155 GDI-SSEIGDLRNIHGLNLSHNFLSGSIP-ES-----FSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       155 ~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~-----~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~  225 (333)
                      ... ......++.|..|+++.+.+.++.- +.     -...++|++|+++.|.+.....  .+..+++|+.+.+..|.++
T Consensus       260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            433 2456677888888888888775421 11     2345778888888888865544  5666677777777777776


Q ss_pred             cc
Q 039997          226 CP  227 (333)
Q Consensus       226 ~~  227 (333)
                      -.
T Consensus       340 ~e  341 (505)
T KOG3207|consen  340 KE  341 (505)
T ss_pred             cc
Confidence            43

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=8.1e-11  Score=103.88  Aligned_cols=179  Identities=17%  Similarity=0.158  Sum_probs=121.7

Q ss_pred             cCCcccceeeccccccccccc-hhhcCCCCCCEEeCCCCcCCCCCC-----hhhhccccccccCCccccccccCCCCccc
Q 039997           23 NEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIP-----SCITNLLFWKVGNGDLYGLVERGRDFDLE   96 (333)
Q Consensus        23 ~~l~~L~~L~L~~N~i~~~~~-~~f~~L~~L~~LdLs~N~l~~~~p-----~~l~~L~~L~~~~n~~~~~~~~~~~~~~~   96 (333)
                      +++.+|+...|.+..+..+.. +....+++++.|||+.|-+....|     +.+++|++|+++.|.+........     
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-----  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-----  192 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence            457889999999999873222 466789999999999998874332     457889999999888765221111     


Q ss_pred             ccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chhh--hhccccEEECCCCcccccCCccccCccccceeec
Q 039997           97 DIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKGV--ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNL  172 (333)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  172 (333)
                                         .....++....++.+.+.+  ....  ..++|+.|+|.+|..-.........+..|++|||
T Consensus       193 -------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  193 -------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             -------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence                               1112222233333332221  1111  1688999999999533244445566788999999


Q ss_pred             ccccCCCCc-hHHHhCCCCCCEEeccCCcccCCCC-C------CCCCCCCCEEEcccCcCc
Q 039997          173 SHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP-Q------LTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       173 s~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~------~~~l~~L~~L~l~~N~l~  225 (333)
                      ++|++-... -...+.++.|+.|+++.+.++.+-. .      ...+++|+.|++..|++.
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            999987443 2456778899999999999876533 2      366899999999999985

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=4.2e-10  Score=103.62  Aligned_cols=190  Identities=30%  Similarity=0.365  Sum_probs=136.4

Q ss_pred             EEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCC-CCCEEeCCCCcCCCCCC---hhhhccccccccCC
Q 039997            6 ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLR-KLSIMDLSHNRLNGSIP---SCITNLLFWKVGNG   81 (333)
Q Consensus         6 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~-~L~~LdLs~N~l~~~~p---~~l~~L~~L~~~~n   81 (333)
                      .++++.|.+. .-......++.++.|++.+|.++.+.+. ...+. +|+.|++++|.+. .+|   ..+.+|+.|.+.+|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4677777774 2334455567899999999999855553 34553 8999999999988 443   34566667777777


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                      ++..++....                                               ....|+.|++++|+++. .|...
T Consensus       174 ~l~~l~~~~~-----------------------------------------------~~~~L~~L~ls~N~i~~-l~~~~  205 (394)
T COG4886         174 DLSDLPKLLS-----------------------------------------------NLSNLNNLDLSGNKISD-LPPEI  205 (394)
T ss_pred             hhhhhhhhhh-----------------------------------------------hhhhhhheeccCCcccc-Cchhh
Confidence            7765432111                                               15778999999999994 44444


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccc
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS  241 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~  241 (333)
                      ....+|+.+.+++|.+. ..+..+..+.++..+.+.+|++......+..++.++.+++++|.++-... ......+..++
T Consensus       206 ~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~  283 (394)
T COG4886         206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELD  283 (394)
T ss_pred             hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEe
Confidence            45566999999999655 44567888899999999999988765577888889999999999885543 44556666667


Q ss_pred             cCCCCCC
Q 039997          242 YRGNLNL  248 (333)
Q Consensus       242 ~~~n~~~  248 (333)
                      ..++...
T Consensus       284 ~s~n~~~  290 (394)
T COG4886         284 LSGNSLS  290 (394)
T ss_pred             ccCcccc
Confidence            7666544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=6.8e-11  Score=107.56  Aligned_cols=149  Identities=30%  Similarity=0.429  Sum_probs=100.9

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---ccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L~~~   79 (333)
                      .|+.+.|..|.|. .+|..+..+..|++|+|+.|+++ ..|..++.|+ |+.|-+++|+++ .+|..++.+.   .|+.+
T Consensus        99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen   99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence            3566778888888 78888899999999999999998 6666666655 888999999988 6676665333   44445


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      .|.+..++.....                                               +.+|+.|.+..|.+. ..|.
T Consensus       175 ~nei~slpsql~~-----------------------------------------------l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  175 KNEIQSLPSQLGY-----------------------------------------------LTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             hhhhhhchHHhhh-----------------------------------------------HHHHHHHHHhhhhhh-hCCH
Confidence            5555443221111                                               455666777777776 3344


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI  205 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  205 (333)
                      .+..|+ |..||+|.|+++ .+|..|.+|+.|++|-|.+|.+...+
T Consensus       207 El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  207 ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence            444544 677777777777 55667777777777777777776533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=7.9e-10  Score=102.27  Aligned_cols=80  Identities=26%  Similarity=0.270  Sum_probs=44.1

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCc
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGD   82 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~   82 (333)
                      ++.+++..|.|.. +-..+..+++|..|++.+|+|+.+.. .+..+.+|++||+++|.|+...+ ..+..|..|++.+|.
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence            4445556666652 22335556666666666666664433 14556666666777666663332 234445555555555


Q ss_pred             ccc
Q 039997           83 LYG   85 (333)
Q Consensus        83 ~~~   85 (333)
                      +..
T Consensus       152 i~~  154 (414)
T KOG0531|consen  152 ISD  154 (414)
T ss_pred             chh
Confidence            554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.74  E-value=1.3e-10  Score=108.60  Aligned_cols=86  Identities=33%  Similarity=0.277  Sum_probs=59.9

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L  217 (333)
                      ++.|++|||++|.++ .+|..-..-.+|+.|++++|.++..  ..+.++++|+.||+++|-|.+...  .+..+..|+.|
T Consensus       208 l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  208 LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             cccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence            566788888888887 3443222223488888888888754  346778888888888888776544  45566778888


Q ss_pred             EcccCcCcccC
Q 039997          218 DVSYNNLSCPI  228 (333)
Q Consensus       218 ~l~~N~l~~~~  228 (333)
                      .|.|||+-|..
T Consensus       285 ~LeGNPl~c~p  295 (1096)
T KOG1859|consen  285 WLEGNPLCCAP  295 (1096)
T ss_pred             hhcCCccccCH
Confidence            88888887653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=2.3e-09  Score=99.14  Aligned_cols=82  Identities=24%  Similarity=0.244  Sum_probs=62.6

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~   80 (333)
                      ++|+.|++.+|.|.. +...+..+++|++|++++|+|+.+.+  +..+..|+.|++++|.|+...- ..+..++.+++.+
T Consensus        95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSY  171 (414)
T ss_pred             cceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhcccCCc
Confidence            578899999999994 43347889999999999999997765  5677789999999999973211 2256666777777


Q ss_pred             Cccccc
Q 039997           81 GDLYGL   86 (333)
Q Consensus        81 n~~~~~   86 (333)
                      |.+..+
T Consensus       172 n~i~~i  177 (414)
T KOG0531|consen  172 NRIVDI  177 (414)
T ss_pred             chhhhh
Confidence            766653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=3.2e-09  Score=91.49  Aligned_cols=182  Identities=20%  Similarity=0.218  Sum_probs=103.9

Q ss_pred             CcccEEECCCCcCCCCCCccc----cCCcccceeeccccccccccchh-------------hcCCCCCCEEeCCCCcCCC
Q 039997            2 SALEILDLRDNYFSGRIPYGI----NEHSNLRALLLKGNYLQGPIPHQ-------------LCQLRKLSIMDLSHNRLNG   64 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~----~~l~~L~~L~L~~N~i~~~~~~~-------------f~~L~~L~~LdLs~N~l~~   64 (333)
                      ++|++||||+|.+.-..+..|    ....+|++|.|.+|.+...-...             ...-++|+.++.++|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            378888888888875544443    34578888888888876332222             2335778888888888763


Q ss_pred             CCC----hhhh---ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh
Q 039997           65 SIP----SCIT---NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG  137 (333)
Q Consensus        65 ~~p----~~l~---~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (333)
                      ..-    ..|+   .+..+++..|.+..-..                                          ......-
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~------------------------------------------~al~eal  209 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGV------------------------------------------TALAEAL  209 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchh------------------------------------------HHHHHHH
Confidence            211    1122   22233333333222000                                          0000000


Q ss_pred             hhhccccEEECCCCccccc----CCccccCccccceeecccccCCCCchHH----H-hCCCCCCEEeccCCcccCC----
Q 039997          138 VILEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSIPES----F-SNLKMIESLDLSHNKLNGQ----  204 (333)
Q Consensus       138 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~-~~l~~L~~L~L~~N~l~~~----  204 (333)
                      ...++|+.|||..|.++..    ....++.+++|+.|+++++.++..-..+    + ...++|+.|.+.+|.|+..    
T Consensus       210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~  289 (382)
T KOG1909|consen  210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA  289 (382)
T ss_pred             HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence            0056777788887777642    2345666777888888887776443222    2 2346777888888777531    


Q ss_pred             CC-CCCCCCCCCEEEcccCcCc
Q 039997          205 IP-QLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       205 ~~-~~~~l~~L~~L~l~~N~l~  225 (333)
                      .. .....+.|..|++++|.+.
T Consensus       290 la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  290 LAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHhcchhhHHhcCCccccc
Confidence            11 3444677778888888773

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.61  E-value=2.5e-09  Score=80.29  Aligned_cols=88  Identities=20%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS  220 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~  220 (333)
                      +..++|++++|.|+ ..|..+..++.|+.|+++.|.+. ..|..+..+.++..||..+|.+..++-.+..-......+++
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhc
Confidence            45677888888888 45555888888888888888888 45556666888888888888777544432222233344557


Q ss_pred             cCcCcccCCC
Q 039997          221 YNNLSCPIPD  230 (333)
Q Consensus       221 ~N~l~~~~~~  230 (333)
                      ++++.+.|+.
T Consensus       155 nepl~~~~~~  164 (177)
T KOG4579|consen  155 NEPLGDETKK  164 (177)
T ss_pred             CCcccccCcc
Confidence            7777776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.57  E-value=1.4e-09  Score=101.88  Aligned_cols=107  Identities=29%  Similarity=0.289  Sum_probs=83.9

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEc
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDV  219 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l  219 (333)
                      ++.++.|||++|+++...  .+..++.|++|||+.|+++.++--.-.+.. |+.|++++|.++.+. .+.++.+|+.||+
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDl  261 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDL  261 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccch
Confidence            678999999999998544  778899999999999999955443334444 999999999988533 4667889999999


Q ss_pred             ccCcCcccCCCC--ccccccCccccCCCCCCCC
Q 039997          220 SYNNLSCPIPDK--EQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       220 ~~N~l~~~~~~~--~~~~~l~~~~~~~n~~~c~  250 (333)
                      ++|-+.+.-.-.  +.+..+..+.+.|||.-|.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999998664322  4555677788999998773

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.40  E-value=1.9e-07  Score=80.75  Aligned_cols=234  Identities=18%  Similarity=0.198  Sum_probs=140.3

Q ss_pred             CcccEEECCCCcCCCC----CCccccCCcccceeecccccc---ccccc-------hhhcCCCCCCEEeCCCCcCCCCCC
Q 039997            2 SALEILDLRDNYFSGR----IPYGINEHSNLRALLLKGNYL---QGPIP-------HQLCQLRKLSIMDLSHNRLNGSIP   67 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L~~N~i---~~~~~-------~~f~~L~~L~~LdLs~N~l~~~~p   67 (333)
                      ..++.++||+|.+...    +...+...++|+.-++++=--   ...+|       .++.+.++|++||||.|-+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            4678999999998722    233456677888888876322   22233       345567799999999999886666


Q ss_pred             hhhh-------ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh-
Q 039997           68 SCIT-------NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI-  139 (333)
Q Consensus        68 ~~l~-------~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  139 (333)
                      +.|.       +|..|++.|+.+...   .......-..         .+...........+.+....++++...+... 
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~---------~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALF---------ELAVNKKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHH---------HHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence            5553       233444444443221   0000000000         0000111111222334444555555444332 


Q ss_pred             ------hccccEEECCCCccccc----CCccccCccccceeecccccCCCC----chHHHhCCCCCCEEeccCCcccCCC
Q 039997          140 ------LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQI  205 (333)
Q Consensus       140 ------l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~  205 (333)
                            .+.|+.+.++.|.|...    ....|.++++|+.|||..|-++..    ....+..+++|+.|+++++.+..-.
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence                  46788899999988632    235677889999999999998843    3456667888999999999886532


Q ss_pred             C------CCCCCCCCCEEEcccCcCcccCC-----CCccccccCccccCCCCC
Q 039997          206 P------QLTELHSLSKFDVSYNNLSCPIP-----DKEQFSTFDESSYRGNLN  247 (333)
Q Consensus       206 ~------~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~l~~~~~~~n~~  247 (333)
                      .      .-...++|+.+.+.+|.++..-.     .+..-+.+..+.+++|..
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            2      12346889999999998873210     011255666777888876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=2.1e-07  Score=56.56  Aligned_cols=36  Identities=33%  Similarity=0.509  Sum_probs=17.0

Q ss_pred             ccceeeccccccccccchhhcCCCCCCEEeCCCCcCC
Q 039997           27 NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus        27 ~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      +|++|++++|+|+.+ |+.+..|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence            445555555555532 223455555555555555554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=1.3e-07  Score=80.17  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=25.6

Q ss_pred             ccccEEECCCCcccccCC-ccccCccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcc
Q 039997          141 EYMAGLDLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKL  201 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l  201 (333)
                      +++..+.+..|.+..... ..+..+|.+--|+|+.|+|.+.. -+++.++++|.-|.+++|.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            344444444444332222 23333444444555555544321 13344444455555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.29  E-value=4e-08  Score=73.87  Aligned_cols=86  Identities=23%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS  220 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~  220 (333)
                      ..|+..+|++|.+...++..-...+.++.++|++|.|+ ..|..++.++.|+.|+++.|.+...+..+..+.++..|+..
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            45777899999999665555556678999999999999 56677999999999999999998666666668889999998


Q ss_pred             cCcCccc
Q 039997          221 YNNLSCP  227 (333)
Q Consensus       221 ~N~l~~~  227 (333)
                      +|.....
T Consensus       132 ~na~~ei  138 (177)
T KOG4579|consen  132 ENARAEI  138 (177)
T ss_pred             CCccccC
Confidence            8887643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.19  E-value=2.2e-06  Score=68.89  Aligned_cols=84  Identities=23%  Similarity=0.157  Sum_probs=55.2

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcccCCCC----CCCCCCCC
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP----QLTELHSL  214 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L  214 (333)
                      ++.|.+|.+.+|+|+.+.|..-.-+++|+.|.|.+|+|.... -.-+..+++|++|.+-+|.++...-    .+..+++|
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l  142 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL  142 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence            456777777777777766665556677777777777766321 1234556777777777777764332    45667788


Q ss_pred             CEEEcccCc
Q 039997          215 SKFDVSYNN  223 (333)
Q Consensus       215 ~~L~l~~N~  223 (333)
                      +.||.++=.
T Consensus       143 ~~LDF~kVt  151 (233)
T KOG1644|consen  143 RTLDFQKVT  151 (233)
T ss_pred             eEeehhhhh
Confidence            888776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=1.4e-06  Score=52.90  Aligned_cols=36  Identities=39%  Similarity=0.677  Sum_probs=16.2

Q ss_pred             ccceeecccccCCCCchHHHhCCCCCCEEeccCCccc
Q 039997          166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN  202 (333)
Q Consensus       166 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  202 (333)
                      +|+.|++++|+|+. +|..++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34455555555552 2333445555555555555444

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.18  E-value=1.5e-06  Score=86.72  Aligned_cols=127  Identities=28%  Similarity=0.348  Sum_probs=84.6

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccc--cccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY--LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      .+...+-+|.+. .++.... .+.|++|-+..|.  +..+.++.|..++.|+.|||++|.=-+.+|+.++.|        
T Consensus       525 ~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L--------  594 (889)
T KOG4658|consen  525 VRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL--------  594 (889)
T ss_pred             eeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh--------
Confidence            344555555554 3333322 3468888888886  565667778888888888888877656777777664        


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                                                                                 -+|++|++++..+. ..|..+
T Consensus       595 -----------------------------------------------------------i~LryL~L~~t~I~-~LP~~l  614 (889)
T KOG4658|consen  595 -----------------------------------------------------------VHLRYLDLSDTGIS-HLPSGL  614 (889)
T ss_pred             -----------------------------------------------------------hhhhcccccCCCcc-ccchHH
Confidence                                                                       44566777777777 566677


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCc
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK  200 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  200 (333)
                      +++..|.+||+..+.-...+|.....|.+|++|.+..-.
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            777777777777766544556666667777777765543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.10  E-value=2.2e-06  Score=85.60  Aligned_cols=176  Identities=22%  Similarity=0.238  Sum_probs=110.4

Q ss_pred             CcccEEECCCCc--CCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcccccccc
Q 039997            2 SALEILDLRDNY--FSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~   79 (333)
                      ++|++|-+..|.  +.......|..++.|++|||++|.--+..|..+++|-+|++|++++..+. .+|.++.+|+.|...
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            467888888886  55455556888999999999998776689999999999999999999998 899999888766665


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh--hhccccEEECCCCc--ccc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV--ILEYMAGLDLSSNE--LTG  155 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~Ls~n~--l~~  155 (333)
                      +...++.....                                             ++.  .+.+|++|.+-.-.  .+.
T Consensus       624 nl~~~~~l~~~---------------------------------------------~~i~~~L~~Lr~L~l~~s~~~~~~  658 (889)
T KOG4658|consen  624 NLEVTGRLESI---------------------------------------------PGILLELQSLRVLRLPRSALSNDK  658 (889)
T ss_pred             ccccccccccc---------------------------------------------cchhhhcccccEEEeeccccccch
Confidence            55444311111                                             000  05678888775443  222


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCC----EEeccCCcccCCCCCCCCCCCCCEEEcccCcCc
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIE----SLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~  225 (333)
                      ..-..+..+.+|+.+.......  ..-..+..++.|.    .+.+..+........+..+.+|+.|.+.+....
T Consensus       659 ~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  659 LLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            2223334555555555533332  0111223333333    333333333333446677788888888776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.1e-07  Score=80.53  Aligned_cols=180  Identities=21%  Similarity=0.176  Sum_probs=105.9

Q ss_pred             CcccEEECCCCcCCCC-CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCc-CCCCCC-hhhhccccccc
Q 039997            2 SALEILDLRDNYFSGR-IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR-LNGSIP-SCITNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~-l~~~~p-~~l~~L~~L~~   78 (333)
                      +.||+||||+..|+.. ...-+..+.+|+.|.|.++++.+-+...+..-.+|+.||++.+. ++...- --+.+++.|+-
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3578889998888721 23345667888999999999887777778888899999988754 331111 11233333333


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccc---c
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT---G  155 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---~  155 (333)
                      .+....++...                                         .....-..+-++|+.|+|+|+.-.   .
T Consensus       265 LNlsWc~l~~~-----------------------------------------~Vtv~V~hise~l~~LNlsG~rrnl~~s  303 (419)
T KOG2120|consen  265 LNLSWCFLFTE-----------------------------------------KVTVAVAHISETLTQLNLSGYRRNLQKS  303 (419)
T ss_pred             cCchHhhccch-----------------------------------------hhhHHHhhhchhhhhhhhhhhHhhhhhh
Confidence            22222221000                                         000000111466777888876422   1


Q ss_pred             cCCccccCccccceeeccccc-CCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccC
Q 039997          156 DISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYN  222 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N  222 (333)
                      .........|+|.+||||+|. ++......|.+++-|++|.++.+-.-....  .+...|.|.+||+.+.
T Consensus       304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            111223457888888888875 443344567777888888888775332111  4566788888887653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.02  E-value=6.2e-06  Score=66.34  Aligned_cols=84  Identities=21%  Similarity=0.276  Sum_probs=72.3

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L  217 (333)
                      ......+||++|.+..  ...|.+++.|.+|.|++|+|+.+.|..-..+++|..|.|.+|+|..+..  .+..+++|+.|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4567789999999863  3467889999999999999998888776778899999999999987665  68888999999


Q ss_pred             EcccCcCc
Q 039997          218 DVSYNNLS  225 (333)
Q Consensus       218 ~l~~N~l~  225 (333)
                      .+-+|+.+
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            99999986

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=7.1e-05  Score=67.78  Aligned_cols=60  Identities=17%  Similarity=0.368  Sum_probs=37.1

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeecccc-ccccccchhhcCCCCCCEEeCCCC-cCCCCCChhh
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGN-YLQGPIPHQLCQLRKLSIMDLSHN-RLNGSIPSCI   70 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~f~~L~~L~~LdLs~N-~l~~~~p~~l   70 (333)
                      +++.|++++|.|+ .+|. +-  .+|++|.++++ .++ ..|+.+.  .+|+.|++++| .+. .+|..+
T Consensus        53 ~l~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sL  114 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESV  114 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccccc
Confidence            5677888888777 4552 21  35888888763 343 5555442  57888888877 444 455543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.59  E-value=0.00011  Score=56.09  Aligned_cols=44  Identities=14%  Similarity=0.172  Sum_probs=25.8

Q ss_pred             CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC
Q 039997           18 IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus        18 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      ....|.+.++|+.+.+.. .++.+...+|.+.++|+.+.+..+ +.
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~   47 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT   47 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc
Confidence            345677777888888874 566677778888888888888765 44

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=7.9e-05  Score=72.78  Aligned_cols=86  Identities=23%  Similarity=0.255  Sum_probs=63.1

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCC-CchHHHhCCCCCCEEeccCCcccCCC-------CCCCCC
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQI-------PQLTEL  211 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~l  211 (333)
                      +++|..||+|+.+++.+  .+.+.+++|+.|.+.+=.+.. ..-..+..|++|++||+|..+.....       ..-..+
T Consensus       172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L  249 (699)
T KOG3665|consen  172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL  249 (699)
T ss_pred             cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence            67899999999998855  677889999999988866663 22235667899999999987654322       112347


Q ss_pred             CCCCEEEcccCcCccc
Q 039997          212 HSLSKFDVSYNNLSCP  227 (333)
Q Consensus       212 ~~L~~L~l~~N~l~~~  227 (333)
                      |.|+.||.++..+...
T Consensus       250 peLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  250 PELRFLDCSGTDINEE  265 (699)
T ss_pred             ccccEEecCCcchhHH
Confidence            8999999998776643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.50  E-value=3.4e-05  Score=64.99  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             CcccEEECCCCcCCCC----CCccccCCcccceeeccccccc---cc-------cchhhcCCCCCCEEeCCCCcCCCCCC
Q 039997            2 SALEILDLRDNYFSGR----IPYGINEHSNLRALLLKGNYLQ---GP-------IPHQLCQLRKLSIMDLSHNRLNGSIP   67 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L~~N~i~---~~-------~~~~f~~L~~L~~LdLs~N~l~~~~p   67 (333)
                      ..++.+|||+|-|...    +...++.-.+|+..+++.-...   ..       .-.++-++++|+..+||.|-+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4678899999988732    2233555677777777764322   11       22345678899999999998887666


Q ss_pred             hhhh
Q 039997           68 SCIT   71 (333)
Q Consensus        68 ~~l~   71 (333)
                      ..+.
T Consensus       110 e~L~  113 (388)
T COG5238         110 EELG  113 (388)
T ss_pred             hHHH
Confidence            5543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.48  E-value=0.00022  Score=54.46  Aligned_cols=118  Identities=16%  Similarity=0.233  Sum_probs=65.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|+.+.+.. .+..+....|.++++|+.+.+.++ +..+...+|.+..+++.+.+.+ .+.......|..         
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~---------   79 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN---------   79 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT---------
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc---------
Confidence            4788899885 577677888999999999999886 7778888999998999999975 433122222322         


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                                                                                ..+++.+++..+ +..+....|
T Consensus        80 ----------------------------------------------------------~~~l~~i~~~~~-~~~i~~~~f  100 (129)
T PF13306_consen   80 ----------------------------------------------------------CTNLKNIDIPSN-ITEIGSSSF  100 (129)
T ss_dssp             -----------------------------------------------------------TTECEEEETTT--BEEHTTTT
T ss_pred             ----------------------------------------------------------cccccccccCcc-ccEEchhhh
Confidence                                                                      355677777665 665777788


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCC
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIE  192 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  192 (333)
                      .+. +|+.+.+.. .++.+....|.+.++|+
T Consensus       101 ~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  101 SNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TT--T--EEE-TT-B-SS----GGG------
T ss_pred             cCC-CceEEEECC-CccEECCccccccccCC
Confidence            886 888888876 44446677777776663

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.00032  Score=60.02  Aligned_cols=183  Identities=18%  Similarity=0.143  Sum_probs=119.0

Q ss_pred             CcccEEECCCCcCCC--CCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC----CCChhhhcccc
Q 039997            2 SALEILDLRDNYFSG--RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG----SIPSCITNLLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~----~~p~~l~~L~~   75 (333)
                      ++++++||.+|.|++  .+...+.+||.|++|+|+.|++...+...-..+.+|+.|-|.+..+.=    ..-+.++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            467889999999983  244557789999999999999974433222578899999999988751    12234455667


Q ss_pred             ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997           76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG  155 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  155 (333)
                      |.+++|++......-.                      -            ...         +-+.+.+|....|...-
T Consensus       151 lHmS~N~~rq~n~Dd~----------------------c------------~e~---------~s~~v~tlh~~~c~~~~  187 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDN----------------------C------------IED---------WSTEVLTLHQLPCLEQL  187 (418)
T ss_pred             hhhccchhhhhccccc----------------------c------------ccc---------cchhhhhhhcCCcHHHH
Confidence            7887776543110000                      0            000         01223344444433210


Q ss_pred             --cCCccccCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCccc
Q 039997          156 --DISSEIGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       156 --~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~  227 (333)
                        ..-..-.-+|++..+.+..|.+..... ..+...+.+..|+|+.|+|.....  .+..+++|..+.+.+||+...
T Consensus       188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence              000111235678889999998875432 356667888899999999987655  789999999999999998643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.30  E-value=0.00098  Score=60.56  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             cCCcccceeeccccccccccchhhcCCCCCCEEeCCC-CcCCCCCChhh-hccccccccCC
Q 039997           23 NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH-NRLNGSIPSCI-TNLLFWKVGNG   81 (333)
Q Consensus        23 ~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~-N~l~~~~p~~l-~~L~~L~~~~n   81 (333)
                      ..+.+++.|++++|.++.+ |. +  -.+|+.|.+++ +.++ .+|..+ .+|+.|.+.++
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLT-TLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcc-cCCchhhhhhhheEccCc
Confidence            3467888899998888744 41 1  24688888887 3443 445433 35566666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.0001  Score=72.02  Aligned_cols=84  Identities=21%  Similarity=0.315  Sum_probs=67.0

Q ss_pred             hccccEEECCCCccccc-CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCE
Q 039997          140 LEYMAGLDLSSNELTGD-ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSK  216 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~  216 (333)
                      +|+|+.|.+++-.+... ......++|+|..||+|+..++..  ..++.+++|+.|.+.+=.+..-..  .+.++.+|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            78999999998766532 234556899999999999999965  668899999999988866664333  7788999999


Q ss_pred             EEcccCcCc
Q 039997          217 FDVSYNNLS  225 (333)
Q Consensus       217 L~l~~N~l~  225 (333)
                      ||+|.....
T Consensus       225 LDIS~~~~~  233 (699)
T KOG3665|consen  225 LDISRDKNN  233 (699)
T ss_pred             eeccccccc
Confidence            999987654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=0.00014  Score=60.95  Aligned_cols=79  Identities=27%  Similarity=0.299  Sum_probs=48.3

Q ss_pred             hccccEEECCCC--cccccCCccccCccccceeecccccCCCC-chHHHhCCCCCCEEeccCCcccCCCC----CCCCCC
Q 039997          140 LEYMAGLDLSSN--ELTGDISSEIGDLRNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP----QLTELH  212 (333)
Q Consensus       140 l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~  212 (333)
                      +++|+.|++|.|  .+.+-.+.....+|+|+++++++|+|+.+ .-..+..+.+|.+||+.+|..+....    .+.-++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            567778888888  55544444445568888888888887731 11224455667778888777665433    234445


Q ss_pred             CCCEEE
Q 039997          213 SLSKFD  218 (333)
Q Consensus       213 ~L~~L~  218 (333)
                      +|.++|
T Consensus       144 ~L~~LD  149 (260)
T KOG2739|consen  144 SLKYLD  149 (260)
T ss_pred             hhcccc
Confidence            555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.05  E-value=0.00027  Score=59.70  Aligned_cols=87  Identities=20%  Similarity=0.218  Sum_probs=50.0

Q ss_pred             hccccEEECCCCccccc----CCccccCccccceeecccccCCCCchHH----Hh--CCCCCCEEeccCCcccCCC----
Q 039997          140 LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSIPES----FS--NLKMIESLDLSHNKLNGQI----  205 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~--~l~~L~~L~L~~N~l~~~~----  205 (333)
                      ..+|+.|||..|-++-.    ...+++.++.|+.|.+..|-++..-..+    |.  ..++|..|...+|.+.+-.    
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~  292 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI  292 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence            46777788887777632    2344556667778888777776432221    21  2356677777777654311    


Q ss_pred             --C--CCCCCCCCCEEEcccCcCcc
Q 039997          206 --P--QLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       206 --~--~~~~l~~L~~L~l~~N~l~~  226 (333)
                        +  .=..+|-|..+.+.+|++..
T Consensus       293 ~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         293 SLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             chhhhhhcccHHHHHHHHccCcchh
Confidence              1  11234556666666777653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.86  E-value=0.0006  Score=57.29  Aligned_cols=85  Identities=24%  Similarity=0.274  Sum_probs=63.9

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccc--cCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCC
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN--FLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLS  215 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~  215 (333)
                      ...|+.|.+.+..++.  -..|-.+++|+.|.+|.|  ++++-.+......++|++++++.|++..+..  .+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            4556777777766652  234567889999999999  6665555556677999999999999986443  567778899


Q ss_pred             EEEcccCcCcc
Q 039997          216 KFDVSYNNLSC  226 (333)
Q Consensus       216 ~L~l~~N~l~~  226 (333)
                      .|++.++.-+.
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            99999887553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.53  E-value=0.00075  Score=34.13  Aligned_cols=19  Identities=42%  Similarity=0.653  Sum_probs=9.2

Q ss_pred             ccEEECCCCcCCCCCCcccc
Q 039997            4 LEILDLRDNYFSGRIPYGIN   23 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~   23 (333)
                      |++|||++|.|+ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3444343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.00018  Score=61.52  Aligned_cols=153  Identities=23%  Similarity=0.174  Sum_probs=99.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccc-cccc-cchhhcCCCCCCEEeCCCCcCCCCCCh-----hhhccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY-LQGP-IPHQLCQLRKLSIMDLSHNRLNGSIPS-----CITNLL   74 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~~-~~~~f~~L~~L~~LdLs~N~l~~~~p~-----~l~~L~   74 (333)
                      .+|+.|.|.++++.+.+...+++-.+|+.|+|+.+. ++.- ..-.|..++.|..|+++.+.+....-.     .-.+++
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            468899999999998888899999999999999753 4421 122477899999999999987532111     112344


Q ss_pred             cccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc-c
Q 039997           75 FWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE-L  153 (333)
Q Consensus        75 ~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l  153 (333)
                      .|++++..-.        .+                 .++..++                  .-..++|.+||||.|. +
T Consensus       290 ~LNlsG~rrn--------l~-----------------~sh~~tL------------------~~rcp~l~~LDLSD~v~l  326 (419)
T KOG2120|consen  290 QLNLSGYRRN--------LQ-----------------KSHLSTL------------------VRRCPNLVHLDLSDSVML  326 (419)
T ss_pred             hhhhhhhHhh--------hh-----------------hhHHHHH------------------HHhCCceeeecccccccc
Confidence            4444321100        00                 0000000                  0015789999999774 4


Q ss_pred             cccCCccccCccccceeecccccCCCCchHH---HhCCCCCCEEeccCC
Q 039997          154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPES---FSNLKMIESLDLSHN  199 (333)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~N  199 (333)
                      +.-.-..|..++.|++|.++.+..  ++|..   +...|+|.+||+.+.
T Consensus       327 ~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  327 KNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            433334566889999999999874  45554   556788999997654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00015  Score=61.41  Aligned_cols=82  Identities=22%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L  217 (333)
                      +.+.+.|+..|+.++++  .....++.|+.|.||-|+|+...  .+..+++|+.|+|+.|.|..+..  .+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34445566666655532  12335566666666666666442  24556666666666666665544  55666666666


Q ss_pred             EcccCcCc
Q 039997          218 DVSYNNLS  225 (333)
Q Consensus       218 ~l~~N~l~  225 (333)
                      .|..||-.
T Consensus        94 WL~ENPCc  101 (388)
T KOG2123|consen   94 WLDENPCC  101 (388)
T ss_pred             hhccCCcc
Confidence            66666543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0032  Score=31.76  Aligned_cols=21  Identities=43%  Similarity=0.602  Sum_probs=11.4

Q ss_pred             ccceeeccccccccccchhhcC
Q 039997           27 NLRALLLKGNYLQGPIPHQLCQ   48 (333)
Q Consensus        27 ~L~~L~L~~N~i~~~~~~~f~~   48 (333)
                      +|++|++++|+|+ .+|..|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 33333443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>TIGR00864 PCC polycystin cation channel protein

Probab=95.89  E-value=0.0051  Score=67.07  Aligned_cols=68  Identities=22%  Similarity=0.233  Sum_probs=45.8

Q ss_pred             eccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCC
Q 039997          195 DLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETS  267 (333)
Q Consensus       195 ~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~  267 (333)
                      ||++|+|+.+.+ .|..+++|+.|+|++|+|.|.|...+...|++.....     -..+....|..|+.+.+..
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~-----v~~~~~i~CasP~~LrG~~   69 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVK-----VRQPEAALCAGPGALAGQP   69 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcc-----ccCCcccCCCCChHHCCCC
Confidence            678899988888 8888899999999999999999765544454432211     1112334566665555543

Note: this model has been restricted to the amino half because for technical reasons.

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.0038  Score=53.14  Aligned_cols=81  Identities=22%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             CCcccEEECCCCcCCCCCCccccCCcccceeeccccccccccc-hhhcCCCCCCEEeCCCCcCCCCCCh-----hhhccc
Q 039997            1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPS-----CITNLL   74 (333)
Q Consensus         1 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~f~~L~~L~~LdLs~N~l~~~~p~-----~l~~L~   74 (333)
                      |+.|++|.||-|.|+..  ..|..++.|++|.|+.|.|..+.. .-+.++++|+.|-|..|.-.+..+.     .+.-|+
T Consensus        40 Mp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             cccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            56789999999999844  457888999999999999985532 3477899999999999988766553     244555


Q ss_pred             cccccCCcc
Q 039997           75 FWKVGNGDL   83 (333)
Q Consensus        75 ~L~~~~n~~   83 (333)
                      +|.-++|.-
T Consensus       118 nLkKLDnv~  126 (388)
T KOG2123|consen  118 NLKKLDNVP  126 (388)
T ss_pred             cchhccCcc
Confidence            665555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.23  E-value=0.012  Score=30.88  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=10.6

Q ss_pred             cccceeeccccccccccchhh
Q 039997           26 SNLRALLLKGNYLQGPIPHQL   46 (333)
Q Consensus        26 ~~L~~L~L~~N~i~~~~~~~f   46 (333)
                      ++|++|+|++|+|+.+.++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555554444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.23  E-value=0.012  Score=30.88  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=10.6

Q ss_pred             cccceeeccccccccccchhh
Q 039997           26 SNLRALLLKGNYLQGPIPHQL   46 (333)
Q Consensus        26 ~~L~~L~L~~N~i~~~~~~~f   46 (333)
                      ++|++|+|++|+|+.+.++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555554444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.74  E-value=0.015  Score=27.23  Aligned_cols=13  Identities=38%  Similarity=0.608  Sum_probs=5.9

Q ss_pred             cccEEECCCCcCC
Q 039997            3 ALEILDLRDNYFS   15 (333)
Q Consensus         3 ~L~~L~Ls~N~i~   15 (333)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.70  E-value=0.025  Score=29.72  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=10.8

Q ss_pred             cccceeecccccCCCCchHHH
Q 039997          165 RNIHGLNLSHNFLSGSIPESF  185 (333)
Q Consensus       165 ~~L~~L~Ls~N~l~~~~~~~~  185 (333)
                      ++|+.|+|++|+|+.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555554444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.70  E-value=0.025  Score=29.72  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=10.8

Q ss_pred             cccceeecccccCCCCchHHH
Q 039997          165 RNIHGLNLSHNFLSGSIPESF  185 (333)
Q Consensus       165 ~~L~~L~Ls~N~l~~~~~~~~  185 (333)
                      ++|+.|+|++|+|+.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555554444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.73  E-value=0.001  Score=62.28  Aligned_cols=184  Identities=22%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             ccEEECCCCcCCCCCC----ccccCCcccceeeccccccccccc----hhhcCC-CCCCEEeCCCCcCCCCC----Chhh
Q 039997            4 LEILDLRDNYFSGRIP----YGINEHSNLRALLLKGNYLQGPIP----HQLCQL-RKLSIMDLSHNRLNGSI----PSCI   70 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~----~~f~~L-~~L~~LdLs~N~l~~~~----p~~l   70 (333)
                      +..|+|.+|.+.....    ..+...++|+.|++++|.+.+...    ..+... ..++.|++..+.++...    .+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6678888888874432    235567888889999998874322    223333 66777888888876432    2233


Q ss_pred             h---ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEE
Q 039997           71 T---NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLD  147 (333)
Q Consensus        71 ~---~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  147 (333)
                      .   .++.+++..|.+..............                                      ......++++|.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~--------------------------------------~~~~~~~le~L~  210 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALES--------------------------------------AASPLSSLETLK  210 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhh--------------------------------------hhcccccHHHHh
Confidence            2   23333333333321000000000000                                      000135577777


Q ss_pred             CCCCccccc----CCccccCccc-cceeecccccCCCC----chHHHhCC-CCCCEEeccCCcccCCCC-----CCCCCC
Q 039997          148 LSSNELTGD----ISSEIGDLRN-IHGLNLSHNFLSGS----IPESFSNL-KMIESLDLSHNKLNGQIP-----QLTELH  212 (333)
Q Consensus       148 Ls~n~l~~~----~~~~~~~l~~-L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~~-----~~~~l~  212 (333)
                      +++|.++..    ....+...++ +..++++.|++...    ....+..+ ..++.++++.|.++....     .+...+
T Consensus       211 L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~  290 (478)
T KOG4308|consen  211 LSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR  290 (478)
T ss_pred             hhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH
Confidence            777776632    1233344444 66688888877643    12334444 566788888887765332     344556


Q ss_pred             CCCEEEcccCcCc
Q 039997          213 SLSKFDVSYNNLS  225 (333)
Q Consensus       213 ~L~~L~l~~N~l~  225 (333)
                      +++.+.+++|++.
T Consensus       291 ~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  291 QLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhcccCccc
Confidence            7777888877765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.48  E-value=0.0039  Score=51.74  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcc
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL  201 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  201 (333)
                      ++.++.||++.|.+. ..|..+..+..+..+++..|..+ ..|-++...++++.+++-.|.+
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            344556667766666 56666666666666666666666 4456666666666666666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.90  E-value=0.0048  Score=51.21  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=72.1

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEc
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDV  219 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l  219 (333)
                      ....+.||++.|++- -...-|+.+..+..|+++.|++. ..|..+..+..++.+++..|..+..+-++...+.++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            355778999999987 55567888899999999999999 7788888888899999999988865559999999999999


Q ss_pred             ccCcCc
Q 039997          220 SYNNLS  225 (333)
Q Consensus       220 ~~N~l~  225 (333)
                      -+|+|.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999975

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.12  E-value=0.085  Score=27.00  Aligned_cols=13  Identities=38%  Similarity=0.468  Sum_probs=4.7

Q ss_pred             ccceeeccccccc
Q 039997           27 NLRALLLKGNYLQ   39 (333)
Q Consensus        27 ~L~~L~L~~N~i~   39 (333)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.71  E-value=0.085  Score=42.98  Aligned_cols=36  Identities=14%  Similarity=0.154  Sum_probs=26.4

Q ss_pred             cccceeeccccccccccchhhcCCCCCCEEeCCCCc
Q 039997           26 SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR   61 (333)
Q Consensus        26 ~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~   61 (333)
                      ..++.+|-++..|..+.-+.+..+++++.|.+.++.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            457788888888876666667777777777776664

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.32  E-value=0.31  Score=26.03  Aligned_cols=14  Identities=36%  Similarity=0.525  Sum_probs=8.8

Q ss_pred             CcccEEECCCCcCC
Q 039997            2 SALEILDLRDNYFS   15 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~   15 (333)
                      ++|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45666666666665

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=88.26  E-value=0.77  Score=26.30  Aligned_cols=26  Identities=8%  Similarity=0.166  Sum_probs=11.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHhhhccc
Q 039997          280 VALYWSFVASCVTVMLGLLAILWVNP  305 (333)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (333)
                      ..+++++++++++.++.+....+++|
T Consensus         6 IaIIv~V~vg~~iiii~~~~YaCcyk   31 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYYACCYK   31 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34445555555544444444333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.92  E-value=0.33  Score=25.47  Aligned_cols=9  Identities=44%  Similarity=0.700  Sum_probs=3.3

Q ss_pred             CEEeCCCCc
Q 039997           53 SIMDLSHNR   61 (333)
Q Consensus        53 ~~LdLs~N~   61 (333)
                      +.|++++|+
T Consensus         5 ~~L~L~~Nk   13 (26)
T smart00365        5 EELDLSQNK   13 (26)
T ss_pred             CEEECCCCc
Confidence            333333333

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.05  E-value=0.48  Score=24.79  Aligned_cols=19  Identities=21%  Similarity=0.464  Sum_probs=12.1

Q ss_pred             CCcccEEECCCCcCCCCCCc
Q 039997            1 DSALEILDLRDNYFSGRIPY   20 (333)
Q Consensus         1 ~~~L~~L~Ls~N~i~~~~~~   20 (333)
                      +++|+.|+.++|.++ .+|+
T Consensus         1 P~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        1 PPSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             CcccceeecCCCccc-cCcc
Confidence            356777777777776 4443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.15  E-value=0.0082  Score=56.35  Aligned_cols=158  Identities=27%  Similarity=0.275  Sum_probs=95.7

Q ss_pred             ccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCCCCChhh--------hccccccccCCccccccccCCCCc
Q 039997           27 NLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIPSCI--------TNLLFWKVGNGDLYGLVERGRDFD   94 (333)
Q Consensus        27 ~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~~~p~~l--------~~L~~L~~~~n~~~~~~~~~~~~~   94 (333)
                      .+.+|.|.+|.+..-    ....+...+.|+.|+++.|.+...--..+        ..++.|++..+.++...       
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g-------  160 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG-------  160 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc-------
Confidence            388999999999743    34567789999999999999973211111        11112222221111100       


Q ss_pred             ccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc----cCCcc----ccCccc
Q 039997           95 LEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG----DISSE----IGDLRN  166 (333)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~  166 (333)
                                                        .......-.. ...++.+|++.|.+..    ..+..    +....+
T Consensus       161 ----------------------------------~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~  205 (478)
T KOG4308|consen  161 ----------------------------------AAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSS  205 (478)
T ss_pred             ----------------------------------hHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhccccc
Confidence                                              0000000000 3567778888888732    22233    335778


Q ss_pred             cceeecccccCCCC----chHHHhCCCC-CCEEeccCCcccCC-----CCCCCCC-CCCCEEEcccCcCcc
Q 039997          167 IHGLNLSHNFLSGS----IPESFSNLKM-IESLDLSHNKLNGQ-----IPQLTEL-HSLSKFDVSYNNLSC  226 (333)
Q Consensus       167 L~~L~Ls~N~l~~~----~~~~~~~l~~-L~~L~L~~N~l~~~-----~~~~~~l-~~L~~L~l~~N~l~~  226 (333)
                      +++|.++++.++..    ....+...++ +..+++..|.+...     .+.+... ..++.++++.|.++.
T Consensus       206 le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  206 LETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             HHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            99999999998832    2345555665 67799999988743     2244444 577999999999873

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=84.17  E-value=0.55  Score=35.86  Aligned_cols=6  Identities=17%  Similarity=0.052  Sum_probs=2.1

Q ss_pred             hhhccc
Q 039997          300 ILWVNP  305 (333)
Q Consensus       300 ~~~~~~  305 (333)
                      ++++.+
T Consensus        19 ~~~~~r   24 (130)
T PF12273_consen   19 FYCHNR   24 (130)
T ss_pred             HHHHHH
Confidence            333333

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=82.14  E-value=0.84  Score=42.96  Aligned_cols=65  Identities=25%  Similarity=0.222  Sum_probs=37.9

Q ss_pred             CccccceeecccccCCCCch--HHHhCCCCCCEEeccCC--cccCCCC-CCCCCCCCCEEEcccCcCccc
Q 039997          163 DLRNIHGLNLSHNFLSGSIP--ESFSNLKMIESLDLSHN--KLNGQIP-QLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N--~l~~~~~-~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      +.+.+..++|++|++..+..  ..-+.-|+|..|+|++|  .+..... .--....|+.|-+.|||+...
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT  285 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence            45667777788887664421  12233467788888887  3332222 112234677788888887644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-25
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-25
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-07

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 147/332 (44%), Gaps = 80/332 (24%)
Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  L L  NY SG IP  +   S LR L L  N L+G IP +L  ++ L  + L  N 
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 62  LNGSIPSCI---TNLLFWKVGNGDLYGLVER--GRDFDLEDIY---NYYNSTVPLSLDRS 113
           L G IPS +   TNL +  + N  L G + +  GR  +L  +    N ++  +P  L   
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--G 532
Query: 114 DTRTL---------------------DTQVVVNFMTKNRYESYK-----------GVILE 141
           D R+L                       ++  NF+   RY   K           G +LE
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 142 Y-------------------------------------MAGLDLSSNELTGDISSEIGDL 164
           +                                     M  LD+S N L+G I  EIG +
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNN 223
             +  LNL HN +SGSIP+   +L+ +  LDLS NKL+G+IPQ ++ L  L++ D+S NN
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 224 LSCPIPDKEQFSTFDESSYRGNLNLCCPPINK 255
           LS PIP+  QF TF  + +  N  LC  P+ +
Sbjct: 713 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 147/332 (44%), Gaps = 80/332 (24%)
Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  L L  NY SG IP  +   S LR L L  N L+G IP +L  ++ L  + L  N 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 62  LNGSIPSCI---TNLLFWKVGNGDLYGLVER--GRDFDLEDIY---NYYNSTVPLSLDRS 113
           L G IPS +   TNL +  + N  L G + +  GR  +L  +    N ++  +P  L   
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--G 535
Query: 114 DTRTL---------------------DTQVVVNFMTKNRYESYK-----------GVILE 141
           D R+L                       ++  NF+   RY   K           G +LE
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 142 Y-------------------------------------MAGLDLSSNELTGDISSEIGDL 164
           +                                     M  LD+S N L+G I  EIG +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNN 223
             +  LNL HN +SGSIP+   +L+ +  LDLS NKL+G+IPQ ++ L  L++ D+S NN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 224 LSCPIPDKEQFSTFDESSYRGNLNLCCPPINK 255
           LS PIP+  QF TF  + +  N  LC  P+ +
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 28/251 (11%)
Query: 12  NYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT 71
           N   G IP  I + + L  L +    + G IP  L Q++ L  +D S+N L+G++P  I+
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 72  NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR 131
           +L        +L G+   G         N  +  +P S            +  N +T   
Sbjct: 147 SL-------PNLVGITFDG---------NRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 132 YESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS---GSIPESFSNL 188
             ++  + L ++   DLS N L GD S   G  +N   ++L+ N L+   G +  S    
Sbjct: 191 PPTFANLNLAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---- 243
Query: 189 KMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLN 247
           K +  LDL +N++ G +PQ LT+L  L   +VS+NNL   IP       FD S+Y  N  
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 248 LCCPPINKSCT 258
           LC  P+  +CT
Sbjct: 304 LCGSPL-PACT 313

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 142 YMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
           Y+ G+    N L G I   I  L  +H L ++H  +SG+IP+  S +K + +LD S+N L
Sbjct: 82  YIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 202 NGQI-PQLTELHSLSKFDVSYNNLSCPIPD 230
           +G + P ++ L +L       N +S  IPD
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  250 bits (640), Expect = 4e-77
 Identities = 82/273 (30%), Positives = 126/273 (46%), Gaps = 4/273 (1%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  + L +N  +G IP  I    NL  L L  N   G IP +L   R L  +DL+ N 
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
            NG+IP+ +         N          ++  ++   +   + +     RS+     + 
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 122 VVVNFMTKNRY---ESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                +T   Y    S        M  LD+S N L+G I  EIG +  +  LNL HN +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237
           GSIP+   +L+ +  LDLS NKL+G+IP  ++ L  L++ D+S NNLS PIP+  QF TF
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729

Query: 238 DESSYRGNLNLCCPPINKSCTNLPELLETSSKG 270
             + +  N  LC  P+ +   +  +      + 
Sbjct: 730 PPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 762

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (370), Expect = 3e-39
 Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 42/231 (18%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSHN 60
             L  LDL  N+F G +P      S L +L L  N   G +P   L ++R L ++DLS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
             +G +P  +TNL         L  L       DL    N ++  +  +L ++   TL  
Sbjct: 354 EFSGELPESLTNLS------ASLLTL-------DLS--SNNFSGPILPNLCQNPKNTLQE 398

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS 180
                                    L L +N  TG I   + +   +  L+LS N+LSG+
Sbjct: 399 -------------------------LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPD 230
           IP S  +L  +  L L  N L G+IPQ L  + +L    + +N+L+  IP 
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (357), Expect = 2e-37
 Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 46/229 (20%)

Query: 4   LEILDLRDNYFSGRIPYGI--NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           L  LDL  N FSG I   +  N  + L+ L L+ N   G IP  L    +L  + LS N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L+G+IPS + +L   +                 L    N     +P  L     +TL+T 
Sbjct: 430 LSGTIPSSLGSLSKLRD--------------LKLWL--NMLEGEIPQEL--MYVKTLET- 470

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                                   L L  N+LTG+I S + +  N++ ++LS+N L+G I
Sbjct: 471 ------------------------LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 182 PESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229
           P+    L+ +  L LS+N  +G IP +L +  SL   D++ N  +  IP
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (351), Expect = 1e-36
 Identities = 67/263 (25%), Positives = 101/263 (38%), Gaps = 47/263 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L+ L L++N F+G+IP  ++  S L +L L  NYL G IP  L  L KL  + L  N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L G IP  +  +         L           L+  +N     +P  L           
Sbjct: 454 LEGEIPQELMYV-------KTL-------ETLILD--FNDLTGEIPSGLSN--------- 488

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                                +  + LS+N LTG+I   IG L N+  L LS+N  SG+I
Sbjct: 489 ------------------CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP-DKEQFSTFDES 240
           P    + + +  LDL+ N  NG IP    +   S   ++ N ++       +      E 
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIP--AAMFKQS-GKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 241 SYRGNLNLCCPPINKSCTNLPEL 263
              GNL       ++    L   
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTR 610

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 3e-36
 Identities = 58/237 (24%), Positives = 85/237 (35%), Gaps = 53/237 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
            +L+ L L +N F+G IP  +      L  L L GN+  G +P        L  + LS N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 61  RLNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS---TVPLSLDRSDTR 116
             +G +P   +  +                     L+ +   +N     +P SL      
Sbjct: 329 NFSGELPMDTLLKMR-------------------GLKVLDLSFNEFSGELPESL------ 363

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD--LRNIHGLNLSH 174
                                 +   +  LDLSSN  +G I   +       +  L L +
Sbjct: 364 --------------------TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 175 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPD 230
           N  +G IP + SN   + SL LS N L+G IP  L  L  L    +  N L   IP 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 3e-36
 Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 50/233 (21%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             LE LD+  N FS  IP+ + + S L+ L + GN L G     +    +L ++++S N+
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 62  LNGSIPSCI-TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
             G IP     +L                 +   L    N +   +P  L  +       
Sbjct: 259 FVGPIPPLPLKSL-----------------QYLSLA--ENKFTGEIPDFLSGACDT---- 295

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS 180
                              L     LDLS N   G +    G    +  L LS N  SG 
Sbjct: 296 -------------------LTG---LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 181 IP-ESFSNLKMIESLDLSHNKLNGQIPQ-LTELH-SLSKFDVSYNNLSCPIPD 230
           +P ++   ++ ++ LDLS N+ +G++P+ LT L  SL   D+S NN S PI  
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (345), Expect = 8e-36
 Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 57/235 (24%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L+ L +  N  SG +        NL  L +  N     IP  L     L  +D+S N+
Sbjct: 178 GELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS---TVPLSLDRSDTRTL 118
           L+G     I+                      +L+ +    N     +P    +S     
Sbjct: 235 LSGDFSRAISTC-------------------TELKLLNISSNQFVGPIPPLPLKS----- 270

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFL 177
                                L+Y   L L+ N+ TG+I   + G    + GL+LS N  
Sbjct: 271 ---------------------LQY---LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIPD 230
            G++P  F +  ++ESL LS N  +G++P   L ++  L   D+S+N  S  +P+
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 1e-34
 Identities = 54/232 (23%), Positives = 86/232 (37%), Gaps = 47/232 (20%)

Query: 2   SALEILDLRDNYFSGRIP--YGINEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLS 58
           ++L  LDL  N  SG +     +   S L+ L +  N L  P       +L  L ++DLS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 59  HNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL 118
            N ++G+                    L        +    N  +  V +S   +     
Sbjct: 160 ANSISGANVVGWVLS-------DGCGELKH----LAIS--GNKISGDVDVSRCVN----- 201

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                                LE+   LD+SSN  +  I   +GD   +  L++S N LS
Sbjct: 202 ---------------------LEF---LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
           G    + S    ++ L++S N+  G IP    L SL    ++ N  +  IPD
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  129 bits (327), Expect = 2e-33
 Identities = 60/256 (23%), Positives = 95/256 (37%), Gaps = 74/256 (28%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  L L  NY SG IP  +   S LR L L  N L+G IP +L  ++ L  + L  N 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L G IPS ++N         +L  +        L +  N     +P  + R         
Sbjct: 478 LTGEIPSGLSNC-------TNLNWI-------SLSN--NRLTGEIPKWIGR--------- 512

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                             LE +A L LS+N  +G+I +E+GD R++  L+L+ N  +G+I
Sbjct: 513 ------------------LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 182 PESFSNLKMIESLDLSHNKLNGQIP---------------------------QLTELHSL 214
           P +        S  ++ N + G+                             QL  L + 
Sbjct: 555 PAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 215 SKFDVSYNNLSCPIPD 230
           +  +++          
Sbjct: 611 NPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  129 bits (326), Expect = 2e-33
 Identities = 61/234 (26%), Positives = 94/234 (40%), Gaps = 49/234 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           SAL+ LD+  N  SG     I+  + L+ L +  N   GPIP     L+ L  + L+ N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENK 280

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
             G IP  ++         G    L       DL    N++   VP              
Sbjct: 281 FTGEIPDFLS---------GACDTLTG----LDLS--GNHFYGAVPPFFGS--------- 316

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE-IGDLRNIHGLNLSHNFLSGS 180
                 +           LE    L LSSN  +G++  + +  +R +  L+LS N  SG 
Sbjct: 317 -----CSL----------LES---LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 181 IPESFSNLKM-IESLDLSHNKLNGQIPQ---LTELHSLSKFDVSYNNLSCPIPD 230
           +PES +NL   + +LDLS N  +G I         ++L +  +  N  +  IP 
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (319), Expect = 2e-32
 Identities = 50/236 (21%), Positives = 88/236 (37%), Gaps = 54/236 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIP--HQLCQLRKLSIMDLSH 59
           + LE L L +++ +G +  G    ++L +L L  N L GP+     L     L  +++S 
Sbjct: 77  TGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 60  NRLNGSIPSCI----TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDT 115
           N L+            +L                    DL    N  +    +    SD 
Sbjct: 136 NTLDFPGKVSGGLKLNSL-----------------EVLDLS--ANSISGANVVGWVLSDG 176

Query: 116 RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175
                                   L++   L +S N+++GD+   +    N+  L++S N
Sbjct: 177 CGE---------------------LKH---LAISGNKISGDVD--VSRCVNLEFLDVSSN 210

Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPD 230
             S  IP    +   ++ LD+S NKL+G   + ++    L   ++S N    PIP 
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (317), Expect = 4e-32
 Identities = 53/233 (22%), Positives = 85/233 (36%), Gaps = 53/233 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSN---LRALLLKGNYLQGPIPHQLCQLRKLSIMDLS 58
           ++LE+LDL  N  SG    G         L+ L + GN + G +   + +   L  +D+S
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 59  HNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL 118
            N  +  IP             GD   L       D+    N  +     ++        
Sbjct: 209 SNNFSTGIPFL-----------GDCSALQH----LDIS--GNKLSGDFSRAIST------ 245

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                    T+          L+    L++SSN+  G I      L+++  L+L+ N  +
Sbjct: 246 --------CTE----------LKL---LNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282

Query: 179 GSIPES-FSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229
           G IP+        +  LDLS N   G +P        L    +S NN S  +P
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (289), Expect = 2e-28
 Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 49/230 (21%)

Query: 7   LDLRDNYFS---GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           +DL     +     +   +   + L +L L  +++ G +         L+ +DLS N L+
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS 113

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV 123
           G + +  +         G   GL    +  ++    N  +    +S              
Sbjct: 114 GPVTTLTSL--------GSCSGL----KFLNVS--SNTLDFPGKVSGGLKLNS------- 152

Query: 124 VNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI---GDLRNIHGLNLSHNFLSGS 180
                           LE    LDLS+N ++G              +  L +S N +SG 
Sbjct: 153 ----------------LEV---LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
           +    S    +E LD+S N  +  IP L +  +L   D+S N LS     
Sbjct: 194 VD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 5e-16
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 145 GLDLSSNELT---GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
            +DLSS  L      +SS +  L  +  L LS++ ++GS+   F     + SLDLS N L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 202 NGQIP---QLTELHSLSKFDVSYNNLSCPIP 229
           +G +     L     L   +VS N L  P  
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 163 DLRNIHGLNLSHNFLS---GSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDV 219
               +  ++LS   L+    ++  S  +L  +ESL LS++ +NG +       SL+  D+
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 220 SYNNLSCPIPDKEQFS 235
           S N+LS P+       
Sbjct: 108 SRNSLSGPVTTLTSLG 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (470), Expect = 2e-56
 Identities = 65/258 (25%), Positives = 99/258 (38%), Gaps = 46/258 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  L +     SG IP  +++   L  L    N L G +P  +  L  L  +    NR
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           ++G+IP             G    L        +    N     +P +    +       
Sbjct: 161 ISGAIPDSY----------GSFSKLFT---SMTIS--RNRLTGKIPPTFANLN------- 198

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                                +A +DLS N L GD S   G  +N   ++L+ N L+  +
Sbjct: 199 ---------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 182 PESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDES 240
                  K +  LDL +N++ G +P  LT+L  L   +VS+NNL   IP       FD S
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 241 SYRGNLNLCCPPINKSCT 258
           +Y  N  LC  P+  +CT
Sbjct: 297 AYANNKCLCGSPL-PACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (335), Expect = 2e-36
 Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 55/234 (23%)

Query: 4   LEILDLRDNYFSGR--IPYGINEHSNLRAL-LLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
           +  LDL          IP  +     L  L +   N L GPIP  + +L +L  + ++H 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS---TVPLSLDRSDTRT 117
            ++G+IP  ++ +                     L  +   YN+   T+P S+       
Sbjct: 112 NVSGAIPDFLSQI-------------------KTLVTLDFSYNALSGTLPPSISS----- 147

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIH-GLNLSHNF 176
                                 L  + G+    N ++G I    G    +   + +S N 
Sbjct: 148 ----------------------LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIP 229
           L+G IP +F+NL +   +DLS N L G          +  K  ++ N+L+  + 
Sbjct: 186 LTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  121 bits (306), Expect = 3e-32
 Identities = 51/228 (22%), Positives = 82/228 (35%), Gaps = 47/228 (20%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG--PIPHQLCQLRKLSIMDLSH-NRLN 63
            D  +  + G +     +   +  L L G  L    PIP  L  L  L+ + +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV 123
           G IP  I  L               +     +       +  +P  L +           
Sbjct: 91  GPIPPAIAKL--------------TQLHYLYITH--TNVSGAIPDFLSQ----------- 123

Query: 124 VNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE 183
              +            L     LD S N L+G +   I  L N+ G+    N +SG+IP+
Sbjct: 124 ---IKT----------LVT---LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 184 SFSNL-KMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
           S+ +  K+  S+ +S N+L G+IP      +L+  D+S N L      
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS--IPESFSNLKMIESLDLSH-NKL 201
             D  +    G +         ++ L+LS   L     IP S +NL  +  L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 202 NGQIP-QLTELHSLSKFDVSYNNLSCPIPD 230
            G IP  + +L  L    +++ N+S  IPD
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (285), Expect = 5e-28
 Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 39/240 (16%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG--PIPHQLCQLRKLSIMDLSH 59
             +  + L  N +            +L+ L+L+   L+     P     LR L+I+DLS+
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
           N +       +  L                     LE +   +N+     L R       
Sbjct: 490 NNIANINDDMLEGLE-------------------KLEILDLQHNN-----LARLWKHANP 525

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
              +                L ++  L+L SN           DL  +  ++L  N L+ 
Sbjct: 526 GGPIYFLK-----------GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQL--TELHSLSKFDVSYNNLSCPIPDKEQFSTF 237
                F+N   ++SL+L  N +     ++      +L++ D+ +N   C       F  +
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 34/257 (13%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  L L  N           +  NL  L L  N L         QL  L  + LS+N+
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 62  LNGSIPSCITNL-------------LFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPL 108
           +       +                   +   G  + +        L  ++       P 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR------LFGLFLNNVQLGPS 210

Query: 109 SLDRSDTRTLDTQVVV-----NFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD 163
             ++      +T +       + ++     ++ G+    +  LDLS N L    +     
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ----------LTELHS 213
           L  +    L +N +      S   L  +  L+L  +     I               L  
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 214 LSKFDVSYNNLSCPIPD 230
           L   ++  N++     +
Sbjct: 331 LEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 52/249 (20%), Positives = 88/249 (35%), Gaps = 46/249 (18%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY---------LQGPIPHQLCQLRKLSI 54
           LE   L  N       + ++   N+R L LK ++         L          L+ L  
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 55  MDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPL------ 108
           +++  N + G   +  T L        +L  L           + N + S   L      
Sbjct: 334 LNMEDNDIPGIKSNMFTGL-------INLKYL----------SLSNSFTSLRTLTNETFV 376

Query: 109 SLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMA---GLDLSSNELTGDIS-SEIGDL 164
           SL  S    L+       +TKN+    +     ++     LDL  NE+  +++  E   L
Sbjct: 377 SLAHSPLHILN-------LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI---PQLTELHSLSKFDVSY 221
            NI  + LS+N        SF+ +  ++ L L    L            L +L+  D+S 
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 222 NNLSCPIPD 230
           NN++    D
Sbjct: 490 NNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 47/249 (18%), Positives = 81/249 (32%), Gaps = 47/249 (18%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSHN 60
           S L IL+L  N  S       +   +L  L L  N +   +  Q    L  +  + LS+N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 61  RLNGSIPSCITNLLFWKV----GNGDLYGLVERGRDFDLEDIYNYYNSTVPLS----LDR 112
           +      +    +   +                     L+++ +  +   PL     LD 
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVA-------------LKNVDSSPSPFQPLRNLTILDL 487

Query: 113 SDTR--TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT--------GDISSEIG 162
           S+     ++  ++                LE +  LDL  N L         G     + 
Sbjct: 488 SNNNIANINDDMLEG--------------LEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSY 221
            L ++H LNL  N       E F +L  ++ +DL  N LN           SL   ++  
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 222 NNLSCPIPD 230
           N ++     
Sbjct: 594 NLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.5 bits (238), Expect = 6e-22
 Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 47/235 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L++L+L+ N  S          +NL  L L  N +Q    +   + + L  +DLSHN 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L+ +       L              E  ++  L    N   +     LD     +L   
Sbjct: 133 LSSTKLGTQVQL--------------ENLQELLLS--NNKIQALKSEELDIFANSSLKK- 175

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                                   L+LSSN++          +  + GL L++  L  S+
Sbjct: 176 ------------------------LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 182 PESFS---NLKMIESLDLSHNKLNGQIP---QLTELHSLSKFDVSYNNLSCPIPD 230
            E          I +L LS+++L+          +  +L+  D+SYNNL+    D
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 12/228 (5%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L +LDL  N  +            L    L+ N +Q    H L  L  +  ++L  + 
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 62  LNGSIPSC-ITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDR-SDTRTLD 119
              SI    +  +  +      L  L       ++E   N              + + L 
Sbjct: 308 TKQSISLASLPKIDDFSFQW--LKCL----EHLNME--DNDIPGIKSNMFTGLINLKYLS 359

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                  +     E++  +    +  L+L+ N+++   S     L ++  L+L  N +  
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 180 SIP-ESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLS 225
            +  + +  L+ I  + LS+NK           + SL +  +    L 
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 43/235 (18%), Positives = 71/235 (30%), Gaps = 49/235 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  LD+  N  S   P    +   L+ L L+ N L             L+ + L  N 
Sbjct: 49  SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           +     +                 L       DL   +N  +ST   +  +         
Sbjct: 109 IQKIKNNPFVK----------QKNL----ITLDLS--HNGLSSTKLGTQVQ--------- 143

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIH--GLNLSHNFLSG 179
                             LE +  L LS+N++    S E+    N     L LS N +  
Sbjct: 144 ------------------LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQ----LTELHSLSKFDVSYNNLSCPIPD 230
             P  F  +  +  L L++ +L   + +         S+    +S + LS     
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 41/238 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGIN--EHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
           +++  L L ++  S          + +NL  L L  N L          L +L    L +
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
           N +       +  L                   F++  +    + T   S+  +    +D
Sbjct: 282 NNIQHLFSHSLHGL-------------------FNVRYLNLKRSFTK-QSISLASLPKID 321

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                               L+ +  L++  N++ G  S+    L N+  L+LS++F S 
Sbjct: 322 DFSFQW--------------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 180 S--IPESFSNLKM--IESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKE 232
                E+F +L    +  L+L+ NK++       + L  L   D+  N +   +  +E
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 41/231 (17%), Positives = 70/231 (30%), Gaps = 46/231 (19%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           + +L+L  N            +S L +L +  N +    P    +L  L +++L HN L+
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV 123
                                 L E                   L L  +  + +     
Sbjct: 87  QLSDKTFAF----------CTNLTE-------------------LHLMSNSIQKIKNNPF 117

Query: 124 VNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE 183
           V               L     LDLS N L+         L N+  L LS+N +     E
Sbjct: 118 VK-QKN----------LIT---LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 184 SFSNLKM--IESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDK 231
                    ++ L+LS N++    P     +  L    ++   L   + +K
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 52/253 (20%), Positives = 80/253 (31%), Gaps = 54/253 (21%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLC---QLRKLSIMDLS 58
           S+L+ L+L  N      P   +    L  L L    L   +  +LC       +  + LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 59  HNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL 118
           +++L+ +  +    L +  +               DL   YN  N     S         
Sbjct: 231 NSQLSTTSNTTFLGLKWTNL------------TMLDLS--YNNLNVVGNDSFAWLPQ--- 273

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                                LEY     L  N +    S  +  L N+  LNL  +F  
Sbjct: 274 ---------------------LEY---FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 179 GSI---------PESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPI 228
            SI           SF  LK +E L++  N + G      T L +L    +S +  S   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 229 PDKEQFSTFDESS 241
              E F +   S 
Sbjct: 370 LTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 49/249 (19%), Positives = 78/249 (31%), Gaps = 43/249 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPH----QLCQLRKLSIMDL 57
             LE L++ DN   G          NL+ L L  ++                  L I++L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 58  SHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLED--IYNYYNSTVPLSLDRSDT 115
           + N+++       + L       G L  L       DL    I           L     
Sbjct: 389 TKNKISKIESDAFSWL-------GHLEVL-------DLGLNEIGQELTGQEWRGL----- 429

Query: 116 RTLDTQVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTG--DISSEIGDLRNIHGL 170
                 +   +++ N+Y          +  L    L    L       S    LRN+  L
Sbjct: 430 ----ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKL---------NGQIPQLTELHSLSKFDVSY 221
           +LS+N ++    +    L+ +E LDL HN L          G I  L  L  L   ++  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 222 NNLSCPIPD 230
           N       +
Sbjct: 546 NGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
            D S  +LT  +  ++    NI  LNL+HN L      +F+    + SLD+  N ++   
Sbjct: 9   ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 206 PQ-LTELHSLSKFDVSYNNLSCPIPD 230
           P+   +L  L   ++ +N LS     
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDK 91

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 6e-24
 Identities = 26/241 (10%), Positives = 70/241 (29%), Gaps = 40/241 (16%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L    +  +     I            +    N +   +   + +L KL    + ++ 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS---TVPLSLDRSDTRTL 118
                          +         ++     DL D+  Y       +P  L        
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------ 271

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT--------GDISSEIGDLRNIHGL 170
                   + +          ++    ++++ N               ++      I  +
Sbjct: 272 --------LPE----------MQL---INVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 171 NLSHN-FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP 229
            + +N   +  +  S   +K +  L+  +N+L G++P       L+  +++YN ++    
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA 370

Query: 230 D 230
           +
Sbjct: 371 N 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (251), Expect = 1e-23
 Identities = 29/250 (11%), Positives = 70/250 (28%), Gaps = 31/250 (12%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSH 59
           +  L L     SGR+P  I + + L  L L  +  +       P  +             
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGL-------VERGRDFDLEDIYNYYN--STVPLSL 110
                +         F  +    +                     I    N  + V  ++
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 111 DRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGL 170
            R       T++   +M  + + +    I E     +    +       +  +L+++  +
Sbjct: 203 MRL------TKLRQFYMGNSPFVA--ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG---------QIPQLTELHSLSKFDVSY 221
            + +      +P     L  ++ ++++ N+             +        +    + Y
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 222 NNLSC-PIPD 230
           NNL   P+  
Sbjct: 315 NNLKTFPVET 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (251), Expect = 1e-23
 Identities = 34/244 (13%), Positives = 66/244 (27%), Gaps = 55/244 (22%)

Query: 2   SALEILDLRDNYFSG-------RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSI 54
           S +  +D   N            +     +  N+ ++ L  N +             LS 
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 55  MDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDR 112
           ++L  N L   IP            N   Y L       DL      +N  + +      
Sbjct: 462 INLMGNMLTE-IPKNSLKDENENFKN--TYLLTS----IDL-----RFNKLTKLSDDFRA 509

Query: 113 SDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNI----- 167
           +                          L Y+ G+DLS N  +    ++  +   +     
Sbjct: 510 TT-------------------------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 168 -HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC 226
            +  +   N      PE  +    +  L +  N +   + +     ++S  D+  N    
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI-TPNISVLDIKDNPNIS 601

Query: 227 PIPD 230
               
Sbjct: 602 IDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 64/254 (25%)

Query: 2   SALEILDLRDNYF-SGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             ++I+ +  N   +  +   + +   L  L    N L+G +P       KL+ ++L++N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTL 118
           ++     +                          +E++   +N    +P   D      +
Sbjct: 364 QITEIPANFCGFTE-------------------QVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-------DISSEIGDLRNIHGLN 171
                                      +D S NE+          +        N+  +N
Sbjct: 405 SA-------------------------IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 172 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--------QIPQLTELHSLSKFDVSYNN 223
           LS+N +S    E FS    + S++L  N L          +       + L+  D+ +N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 224 LSCPIPDKEQFSTF 237
           L+  + D  + +T 
Sbjct: 500 LTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 30/236 (12%), Positives = 74/236 (31%), Gaps = 44/236 (18%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L    + ++ F         E+ N                 +   L+ L+ +++ +  
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
               +P+ +  L                    +++ I    N  +     + D + L   
Sbjct: 261 NLTKLPTFLKALP-------------------EMQLINVACNRGISGEQLKDDWQALAD- 300

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNEL-TGDISSEIGDLRNIHGLNLSHNFLSGS 180
                            + E +  + +  N L T  + + +  ++ +  L   +N L G 
Sbjct: 301 ---------------APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNLSCPIPDKEQFS 235
           +P  F +   + SL+L++N++             +     ++N L   IP+     
Sbjct: 346 LPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 51/244 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSHN 60
             L  L+L  N  +            +  L    N L+  P       +  +S +D S+N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
            +          L        ++  +       +L +                       
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSI-------NLSN----------------------- 442

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-------DISSEIGDLRNIHGLNLS 173
               N ++K   E +       ++ ++L  N LT        D +    +   +  ++L 
Sbjct: 443 ----NQISKFPKELFST--GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 174 HNFLSGSIPE-SFSNLKMIESLDLSHNKLN------GQIPQLTELHSLSKFDVSYNNLSC 226
            N L+    +   + L  +  +DLS+N  +           L      ++ D   N    
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 227 PIPD 230
             P+
Sbjct: 557 EWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 43/229 (18%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
            A E  +              +   +L  + +        +P  L  L ++ +++++ NR
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
                               D   L +      ++ IY  YN   T P+       + L 
Sbjct: 285 GISGEQL-----------KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                                     L+   N+L G +    G    +  LNL++N ++ 
Sbjct: 334 M-------------------------LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTE---LHSLSKFDVSYNNLS 225
                    + +E+L  +HNKL   IP + +   +  +S  D SYN + 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 31/244 (12%), Positives = 81/244 (33%), Gaps = 66/244 (27%)

Query: 2   SALEILDLRDNYF--------SGRIPYGINEHSNLRALLLKGNYLQ-GPIPHQLCQLRKL 52
             ++++++  N            +          ++ + +  N L+  P+   L +++KL
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 53  SIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSL 110
            +++  +N+L G                G    L       +L      YN  + +P + 
Sbjct: 333 GMLECLYNQLEG-KLPAF----------GSEIKLAS----LNL-----AYNQITEIPANF 372

Query: 111 DRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-DISSEIGDLRNIHG 169
                          F  +          +E    L  + N+L       +   +  +  
Sbjct: 373 -------------CGFTEQ----------VEN---LSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 170 LNLSHNFLSG-------SIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSY 221
           ++ S+N +          +  +      + S++LS+N+++    +  +    LS  ++  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 222 NNLS 225
           N L+
Sbjct: 467 NMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 34/233 (14%), Positives = 60/233 (25%), Gaps = 54/233 (23%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-------PIPHQLCQLRKLSIMD 56
           +  ++L +N  S       +  S L ++ L GN L                    L+ +D
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 57  LSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSD 114
           L  N+L   +                L  LV      DL      YN  S  P     S 
Sbjct: 495 LRFNKLT-KLSDDF--------RATTLPYLVG----IDLS-----YNSFSKFPTQPLNSS 536

Query: 115 T-RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS 173
           T +    +   +                         N    +    I    ++  L + 
Sbjct: 537 TLKGFGIRNQRD----------------------AQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLS 225
            N +     +   N+     LD+  N         +        + + Y+   
Sbjct: 575 SNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 32/258 (12%), Positives = 74/258 (28%), Gaps = 40/258 (15%)

Query: 45  QLCQLRKLSIMDLSHNRLNGSIPSCITNLLF---------WKVGNGDLYGLVERGRDFDL 95
            L    +++ + L     +G +P  I  L            +  N  L+G      +   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 96  EDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAG--LDLSSNEL 153
           E             +D          +     +  + +S K      +    +   SN +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 154 TGDISSEIGDLRNIHGLNLSHNFLSGSI-------------------PESFSNLKMIESL 194
           T  +S  +  L  +    + ++                            + NLK +  +
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 195 DLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNL------- 246
           ++ +     ++P  L  L  +   +V+ N        K+ +    ++     +       
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 247 -NLCCPPINKSCTNLPEL 263
            NL   P+  S   + +L
Sbjct: 315 NNLKTFPVETSLQKMKKL 332

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 29/208 (13%), Positives = 54/208 (25%), Gaps = 49/208 (23%)

Query: 2   SALEILDLRDNYFSG-------RIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLS 53
           S L  ++L  N  +                   L ++ L+ N L       +   L  L 
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 54  IMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRS 113
            +DLS+N  +   P+             +   L   G     +   N      P  +   
Sbjct: 517 GIDLSYNSFSK-FPTQP----------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITL- 564

Query: 114 DTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS 173
                                        +  L + SN++   ++ +I    NI  L++ 
Sbjct: 565 --------------------------CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIK 595

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKL 201
            N                    L ++K 
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 10/186 (5%)

Query: 90  GRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAG---- 145
           G  F ++D     ++ VP+ L R+     D   +         +++         G    
Sbjct: 2   GEQFTVKDNALTDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN 61

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
            +   +         +     + GL+L     SG +P++   L  +E L L  +      
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 206 -----PQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSY-RGNLNLCCPPINKSCTN 259
                  ++   S  +      +      D +    F +      N +     I KS   
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 260 LPELLE 265
             +  +
Sbjct: 182 TLKDTQ 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 18/226 (7%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
            AL+ L       S      ++    L +L L  N++      +     KL ++D  +N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           ++      +++L              ++  +  L    N      P + D +  ++L+  
Sbjct: 165 IHYLSKEDMSSL--------------QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN-- 208

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHG--LNLSHNFLSG 179
                     ++  K   ++ +        +      +    L  +    +NL  ++   
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
               +F     ++ LDL+   L+     L  L +L K  +S N   
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 47/231 (20%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           +E ++L+ +YF        +  S L+ L L   +L   +P  L  L  L  + LS N+  
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFE 314

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV 123
                  +N                      L  +    N+                ++ 
Sbjct: 315 NLCQISASNFP-------------------SLTHLSIKGNT-------------KRLELG 342

Query: 124 VNFMTKNRYESYKGVILEYMAGLDLSSNELT--GDISSEIGDLRNIHGLNLSHNFLSGSI 181
              +            LE +  LDLS +++      + ++ +L ++  LNLS+N      
Sbjct: 343 TGCLEN----------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIPD 230
            E+F     +E LDL+  +L  +  Q     LH L   ++S++ L      
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 28/237 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L+ LDL   + S  +P G+   S L+ L+L  N  +            L+ + +  N 
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
               + +         + N              L ++   ++            R L + 
Sbjct: 337 KRLELGTGC----LENLEN--------------LRELDLSHDDIETSDCCNLQLRNL-SH 377

Query: 122 VVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTG-DISSEIGDLRNIHGLNLSHNFL 177
           +    ++ N   S K    +    L   DL+   L   D  S   +L  +  LNLSH+ L
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQ----LTELHSLSKFDVSYNNLSCPIPD 230
             S  + F  L  ++ L+L  N       Q    L  L  L    +S+ +LS     
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 9e-19
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 13/246 (5%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIM--DLSH 59
             LE L L  N+ S            L+ L  + N +       +  L++ + +  +L+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN-YYNSTVPLSLDRSDTRTL 118
           N + G  P    + +F  +  G    L+   +      I + +  +   +  +       
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 119 DTQVVVNFMT----KNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIHGLN 171
           +    ++  +    K+ + +         +GL   DL++  L+ ++ S +  L  +  L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 172 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIP 229
           LS N        S SN   +  L +  N    ++    L  L +L + D+S++++     
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 230 DKEQFS 235
              Q  
Sbjct: 368 CNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 49/237 (20%), Positives = 85/237 (35%), Gaps = 37/237 (15%)

Query: 2   SALEILDLRDN--YFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
             L  LDL  +    S      +   S+L++L L  N           +  +L ++DL+ 
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 60  NRLNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL 118
            RL      S   NL                     L+ +   ++      LD S  +  
Sbjct: 410 TRLKVKDAQSPFQNL-------------------HLLKVLNLSHS-----LLDISSEQLF 445

Query: 119 D--TQVVVNFMTKNRYESYKGVILEYMAGL------DLSSNELTGDISSEIGDLRNIHGL 170
           D    +    +  N +          +  L       LS  +L+         L+ ++ +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSC 226
           +LSHN L+ S  E+ S+LK I  L+L+ N ++  +P  L  L      ++  N L C
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 34/236 (14%), Positives = 62/236 (26%), Gaps = 53/236 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L  LDL                  L  L+L  N L       L   + L  +      
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           ++      + N                      LE +Y   N  S++ L       +   
Sbjct: 117 ISSIDFIPLHNQK-------------------TLESLYLGSNHISSIKLPKGFPTEK--- 154

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHG--LNLSHNFL 177
                               L+    LD  +N +      ++  L+      LNL+ N +
Sbjct: 155 --------------------LKV---LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQ---LTELHSLSKFDVSYNNLSCPIPD 230
           +  I     +  + +SL+    +    I +    + + SL        +     P 
Sbjct: 192 A-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 23/242 (9%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQ-GPIPHQLCQLRKLSIMDLSHN 60
             L++LD ++N         ++       L L  N      I            ++    
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
           +    I   + N     +  G    + +      + +     +    ++L +     + +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES-INLQKHYFFNISS 271

Query: 121 QVVVNF-------MTKNRYESYKGVILEYMAG------LDLSSNELTGDISSEIGDLRNI 167
                F       +T          +   + G      L LS+N+          +  ++
Sbjct: 272 NTFHCFSGLQELDLTATHLSE----LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 168 HGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP---QLTELHSLSKFDVSYNN 223
             L++  N     +      NL+ +  LDLSH+ +        QL  L  L   ++SYN 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 224 LS 225
             
Sbjct: 388 PL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 3/121 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L      ++      + + + +  L L  N +S          + ++ LD  +N ++   
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 206 PQ-LTELHSLS--KFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPE 262
            + ++ L   +    +++ N+++   P     + F   ++ G  NL         + +  
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 263 L 263
           L
Sbjct: 230 L 230

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L+ S N L    ++    L N+  L+L+   +     ++F +   +++L L+ N L    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 206 PQ-LTELHSLSKFDVSYNNLSCPIPD 230
              L+   +L         +S     
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
            +  +  L  +I   +    +   L  S N L      +FS L  +  LDL+  ++    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 206 PQ-LTELHSLSKFDVSYNNLS 225
                  H L    ++ N L 
Sbjct: 74  EDTFQSQHRLDTLVLTANPLI 94

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 43/231 (18%), Positives = 71/231 (30%), Gaps = 31/231 (13%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             LE+LDL       +           L+ L L  + L          L  L  ++L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDT-RTLD 119
                      +L         L  L        L   +   +S    +         +D
Sbjct: 460 HFPKGNIQKTNSL-------QTLGRL----EILVLS--FCDLSSIDQHAFTSLKMMNHVD 506

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGL--DLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                  ++ NR  S     L ++ G+  +L+SN ++  + S +  L     +NL  N L
Sbjct: 507 -------LSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQLT--ELHSLSKFDVSYNNLSC 226
             +     SN+  +E    +  KL              L    +S   LSC
Sbjct: 560 DCTC----SNIYFLEWYKENMQKLED-TEDTLCENPPLLRGVRLSDVTLSC 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 4e-21
 Identities = 33/258 (12%), Positives = 69/258 (26%), Gaps = 54/258 (20%)

Query: 4   LEILDLRDNYFSGRIP-----YGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLS 58
           +  +D   N                +  N   + L  N +Q            +S + LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 59  HNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTR 116
           +N +  SIP            N   Y L       DL      +N  +++      +   
Sbjct: 706 NNLM-TSIPENSLKPKDGNYKN--TYLLTT----IDL-----RFNKLTSLSDDFRATT-- 751

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH-- 174
                                  L Y++ +D+S N  +    ++  +   +    + H  
Sbjct: 752 -----------------------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787

Query: 175 ----NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL-SCPIP 229
               N +    P   +    +  L +  N +   + +      L   D++ N   S  + 
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL-TPQLYILDIADNPNISIDVT 845

Query: 230 DKEQFSTFDESSYRGNLN 247
               +          +  
Sbjct: 846 SVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 9e-21
 Identities = 34/249 (13%), Positives = 78/249 (31%), Gaps = 34/249 (13%)

Query: 12  NYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT 71
           + +  +    ++ +  +  L L G   +G +P  + QL +L ++    +    S      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG- 367

Query: 72  NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR 131
                         L     +     I  +Y         R +   L    +        
Sbjct: 368 -----------DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 132 YESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG------------ 179
            +    + L+    +   +N +T  IS  I  L  +  +  +++  +             
Sbjct: 417 IKKDSRISLKDT-QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474

Query: 180 -------SIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDK 231
                  +   S+SNLK +  ++L +     Q+P  L +L  L   +++ N        K
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 232 EQFSTFDES 240
             ++   + 
Sbjct: 535 ADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 8e-20
 Identities = 42/259 (16%), Positives = 85/259 (32%), Gaps = 46/259 (17%)

Query: 4   LEILDLRDNYFSG---------RIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLS 53
           L+ L++  N             R+    +    ++   +  N L+  P    L ++ KL 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 54  IMDLSHNRLNGSIPSCITNL-----------LFWKVGNGDLYGLVERGRDFDLEDIYNYY 102
           ++D  HN++   + +                   ++                +E +   +
Sbjct: 577 LLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTD------QVEGLGFSH 628

Query: 103 N--STVPLSLDRSDTRTLDT-QVVVNFMTKNRYE---SYKGVILEYMAGLDLSSNELTGD 156
           N    +P   +      + +     N +         S         + + LS NE+   
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 157 ISSEIGDLRNIHGLNLSHNFLS-------GSIPESFSNLKMIESLDLSHNKLNGQIP--- 206
            +        I  + LS+N ++            ++ N  ++ ++DL  NKL   +    
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF 747

Query: 207 QLTELHSLSKFDVSYNNLS 225
           + T L  LS  DVSYN  S
Sbjct: 748 RATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 9e-20
 Identities = 35/232 (15%), Positives = 62/232 (26%), Gaps = 43/232 (18%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
            E  +              +   +L  + L        +P  L  L +L  ++++ NR  
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQ 121
                   +             +    + F +      YN     P S        L   
Sbjct: 529 S-AAQLKADWTRLADDEDTGPKI----QIFYM-----GYNNLEEFPASASLQKMVKLGL- 577

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                                   LD   N++        G    +  L L +N +    
Sbjct: 578 ------------------------LDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 182 PESFSNLKMIESLDLSHNKLNGQIP---QLTELHSLSKFDVSYNNLSCPIPD 230
            +  +    +E L  SHNKL   IP       ++ +   D SYN +     +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 5e-19
 Identities = 32/237 (13%), Positives = 73/237 (30%), Gaps = 46/237 (19%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L+I+   ++ F+       N   +                     L+ L+ ++L +  
Sbjct: 448 TKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
               +P  + +L                     L+ +    N  +  +  ++D   L   
Sbjct: 503 NMTQLPDFLYDLPE-------------------LQSLNIACNRGISAAQLKADWTRLADD 543

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-DISSEIGDLRNIHGLNLSHNFLSGS 180
              +   K          ++      +  N L     S+ +  +  +  L+  HN +   
Sbjct: 544 --EDTGPK----------IQI---FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--R 586

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIPDKEQFS 235
             E+F     +  L L +N++  +IP+        +     S+N L   IP+     
Sbjct: 587 HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.5 bits (214), Expect = 9e-19
 Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 61/248 (24%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSH 59
             L  L L  N     IP         +  L    N L+  P       +  +  +D S+
Sbjct: 595 VKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRT 117
           N++     +   ++  +K  N                 +   YN     P  L  +    
Sbjct: 654 NKIGSEGRNISCSMDDYKGIN--------------ASTVTLSYNEIQKFPTELFAT---- 695

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT-------GDISSEIGDLRNIHGL 170
                                    ++ + LS+N +T               +   +  +
Sbjct: 696 ----------------------GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 171 NLSHNFLSGSIPES--FSNLKMIESLDLSHNKLN------GQIPQLTELHSLSKFDVSYN 222
           +L  N L+ S+ +    + L  + ++D+S+N  +          QL       + D   N
Sbjct: 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 223 NLSCPIPD 230
            +    P 
Sbjct: 793 RILRQWPT 800

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 46/272 (16%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGP---------IPHQLCQLRKL 52
             L  ++L +     ++P  + +   L++L +  N              +        K+
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 53  SIMDLSHNRLNGSIPSCI----TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STV 106
            I  + +N L     S        L      +  +  L   G +  L D+   YN    +
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI 610

Query: 107 PLSL--DRSDTRTLD------TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGD-- 156
           P            L         +   F  K+         +  M  +D S N++  +  
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS---------VYVMGSVDFSYNKIGSEGR 661

Query: 157 ---ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL--------NGQI 205
               S +     N   + LS+N +     E F+    I ++ LS+N +          + 
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 206 PQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237
                 + L+  D+ +N L+  + D  + +T 
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 8e-17
 Identities = 32/249 (12%), Positives = 67/249 (26%), Gaps = 59/249 (23%)

Query: 1   DSALEILDLRDNYFS-----GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIM 55
           D  L + DL  +  +       I            +    N +   I   + +L KL I+
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQII 453

Query: 56  DLSHNRLNGSIPSCITNLLFWKVGN---------GDLYGLVERGRDFDLEDIYNYYNSTV 106
             +++       +                      +L  L     D +L +      + +
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL----TDVELYN--CPNMTQL 507

Query: 107 PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG---------DI 157
           P  L                + +          L+    L+++ N              +
Sbjct: 508 PDFLYD--------------LPE----------LQS---LNIACNRGISAAQLKADWTRL 540

Query: 158 SSEIGDLRNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPQLTELHSLSK 216
           + +      I    + +N L       S   +  +  LD  HNK+   +        L+ 
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTD 599

Query: 217 FDVSYNNLS 225
             + YN + 
Sbjct: 600 LKLDYNQIE 608

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 28/209 (13%), Positives = 56/209 (26%), Gaps = 49/209 (23%)

Query: 2   SALEILDLRDNYFS-------GRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLS 53
           S +  + L +N  +                   L  + L+ N L       +   L  LS
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 54  IMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRS 113
            MD+S+N  + S P+             +   L   G     +   N      P  +   
Sbjct: 757 NMDVSYNCFS-SFPTQP----------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITT- 804

Query: 114 DTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS 173
                                        +  L + SN++   +  ++     ++ L+++
Sbjct: 805 --------------------------CPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIA 835

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKLN 202
            N        S           L ++K  
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 16/190 (8%)

Query: 89  RGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNF--MTKNRYESYKGVILEYMAGL 146
           RG  F + D     ++ VP+ L  +     D + +         +   Y    +      
Sbjct: 240 RGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHS 299

Query: 147 -----DLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
                +   +        ++ +   + GL+L+     G +P++   L  ++ L    +  
Sbjct: 300 LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 202 --------NGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI 253
                   + ++          +  + Y  +      +   S   + +   N  +     
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 254 NKSCTNLPEL 263
           + S  +L + 
Sbjct: 420 D-SRISLKDT 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 27/233 (11%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQ--GPIPHQLCQLRKLSIMDLSHNR 61
             +  L      G   +   +  +L  L L  N L   G           L  +DLS N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 62  LNGSIPSCI--TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
           +     + +    L      + +L  + E      L ++         + LD S      
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL---------IYLDISH----- 430

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLS 178
                          + G  L  +  L ++ N    +   +I  +LRN+  L+LS   L 
Sbjct: 431 -----THTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPD 230
              P +F++L  ++ L++SHN            L+SL   D S N++      
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 39/237 (16%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
            + + LDL  N       Y       L+ L L    +Q         L  LS + L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDT-RTLDT 120
           +        + L   +                          S     +    T + L+ 
Sbjct: 88  IQSLALGAFSGLSSLQK--------------LVAV--ETNLASLENFPIGHLKTLKELN- 130

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGL------DLSSNELTGDISSEIGDLRNIH----GL 170
                 +  N  +S    + EY + L      DLSSN++     +++  L  +      L
Sbjct: 131 ------VAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLS 225
           +LS N ++   P +F  ++ +  L L +N  +  + +  +  L  L    +      
Sbjct: 183 DLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 6e-19
 Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 20/231 (8%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSHN 60
           S+L+ L   +   +    + I     L+ L +  N +Q   +P     L  L  +DLS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD- 119
           ++     + +            L+ +       DL    N  N   P +        L  
Sbjct: 160 KIQSIYCTDLRV----------LHQMPLLNLSLDLS--LNPMNFIQPGAFKEIRLHKLTL 207

Query: 120 --TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                 +N M           +   + G   +   L     S +  L N+        +L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 178 SGS---IPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
                 I + F+ L  + S  L    +  ++   +        ++      
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG 317

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 31/245 (12%)

Query: 4   LEILDLRDNY---FSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
           L I + R  Y   +   I    N  +N+ +  L    ++               ++L + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC 314

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERG-----RDFDLEDIYNYYNSTVPLSLDRSDT 115
           +        + +L      +                  DL      +      S   + +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 116 -RTLD------TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNI 167
            + LD        +  NF+   +        LE+   LD   + L       +   LRN+
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQ--------LEH---LDFQHSNLKQMSEFSVFLSLRNL 423

Query: 168 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLS 225
             L++SH     +    F+ L  +E L ++ N           TEL +L+  D+S   L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 226 CPIPD 230
              P 
Sbjct: 484 QLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 9e-18
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDLS  +L     +    L ++  LN+SHN         +  L  ++ LD S N +    
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 206 PQLTE--LHSLSKFDVSYNNLSCPIP 229
            Q  +    SL+  +++ N+ +C   
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDLS N L    S        +  L+LS   +      ++ +L  + +L L+ N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 206 PQ-LTELHSLSKFDVSYNNLSCPIPD 230
               + L SL K      NL+     
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 204
           L L+ N +          L ++  L      L+        +LK ++ L+++HN +   +
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 205 IPQ-LTELHSLSKFDVSYNNLSCPIPD 230
           +P+  + L +L   D+S N +      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 146 LDLSSNELTG-DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLK----MIESLDLSHNK 200
           L+++ N +    +     +L N+  L+LS N +          L     +  SLDLS N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 201 LNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
           +N   P   +   L K  +  N  S  +  
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 46/199 (23%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
           S+LE+L +  N F       I  E  NL  L L    L+   P     L  L ++++SHN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
                       L   +V                             L    +   T   
Sbjct: 505 NFFSLDTFPYKCLNSLQV-----------------------------LDYSLNHIMTSKK 535

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE--IGDLRNIHGLNLSHNFLS 178
           Q + +F +   +             L+L+ N+       +  +  +++   L +    + 
Sbjct: 536 QELQHFPSSLAF-------------LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 179 GSIPESFSNLKMIESLDLS 197
            + P     + ++ SL+++
Sbjct: 583 CATPSDKQGMPVL-SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 4/85 (4%)

Query: 147 DLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206
                     I   +    +   L+LS N L      SF +   ++ LDLS  ++     
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 207 Q-LTELHSLSKFDVSYNNLSCPIPD 230
                L  LS   ++ N +      
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALG 94

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSHN 60
             L  LD+   +         N  S+L  L + GN  Q         +LR L+ +DLS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 61  RLNGSIPSCITNL 73
           +L    P+   +L
Sbjct: 481 QLEQLSPTAFNSL 493

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             LE LD + +       + +     NL  L +   + +         L  L ++ ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 61  RLNGSIPSCI 70
               +    I
Sbjct: 456 SFQENFLPDI 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 53/237 (22%), Positives = 81/237 (34%), Gaps = 39/237 (16%)

Query: 2   SALEILDLRDN--YFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
            +L  LDL  N   FSG   Y     ++LR L L  N     +      L +L  +D  H
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQH 408

Query: 60  NRLNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDT-RT 117
           + L      S   +L         L  L       D+   Y               +  T
Sbjct: 409 STLKRVTEFSAFLSL-------EKLLYL-------DIS--YTNTKIDFDGIFLGLTSLNT 452

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAG-------LDLSSNELTGDISSEIGDLRNIHGL 170
           L        M  N +   K   L  +         LDLS  +L          L  +  L
Sbjct: 453 LK-------MAGNSF---KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSC 226
           N+SHN L       ++ L  + +LD S N++            SL+ F+++ N+++C
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 36/233 (15%), Positives = 64/233 (27%), Gaps = 50/233 (21%)

Query: 1   DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
               + L +            +     L++L L  N  +G I  +   L  LS +DLS N
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRN 360

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
            L+ S     ++L                     L  +   +N  + +S +      L  
Sbjct: 361 ALSFSGCCSYSDLGTNS-----------------LRHLDLSFNGAIIMSANFMGLEELQH 403

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLSG 179
                                    LD   + L      S    L  +  L++S+     
Sbjct: 404 -------------------------LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIPD 230
                F  L  + +L ++ N               +L+  D+S   L      
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 25/233 (10%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSHN 60
           ++LE L   +   +    + I +   L+ L +  N++    +P     L  L  +DLS+N
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
            +     + +  L      N  L          D+    N  +     +        L  
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSL----------DMS--LNPIDFIQDQAFQGIKLHELT- 210

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGL--------NL 172
            +  NF + N         L  +    L   E   + + EI +   + GL         L
Sbjct: 211 -LRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 173 SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           ++          F  L  + ++ L+   +   +  + +        +    L 
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLK 320

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 44/235 (18%), Positives = 77/235 (32%), Gaps = 18/235 (7%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQ-LRKLSIMDLSHNRL 62
              LD+  N     I     +   L  L L+GN+    I     Q L  L +  L     
Sbjct: 183 NLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 63  NGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVP---------LSLDR 112
                       +    G  D+     R    +           +          +S+  
Sbjct: 242 KDERNLEIFEPSIM--EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 113 SDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNL 172
            +      +     + + + + +  + L ++  L L+ N+ +  IS +   L ++  L+L
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDL 357

Query: 173 SHNFLSGSIPESFSNLKM--IESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           S N LS S   S+S+L    +  LDLS N           L  L   D  ++ L 
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 55/266 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S+ + +DL  N       Y  +  S L+ L L    ++         L  LS + L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 62  LNGSIPSCITNL-----------LFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPL 108
           +    P   + L               + +  +  L+       L+ +   +N   +  L
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT------LKKLNVAHNFIHSCKL 145

Query: 109 SLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIH 168
               S+   L                           +DLS N +     +++  LR   
Sbjct: 146 PAYFSNLTNLVH-------------------------VDLSYNYIQTITVNDLQFLRENP 180

Query: 169 G----LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYN 222
                L++S N +     ++F  +K +  L L  N  +  I    L  L  L    +   
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 223 NLSCPIPDKEQFSTFDESSYRGNLNL 248
                  D+     F+ S   G  ++
Sbjct: 240 EFK----DERNLEIFEPSIMEGLCDV 261

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 43/240 (17%), Positives = 74/240 (30%), Gaps = 42/240 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L+ LDL             +   +L  L+L GN +Q   P     L  L  +     +
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDT---R 116
           L       I  L+                    L+ +   +N   +  L    S+     
Sbjct: 116 LASLESFPIGQLI-------------------TLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 117 TLD------TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGL 170
            +D        + VN +   R      + L      D+S N +   I  +      +H L
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSL------DMSLNPIDF-IQDQAFQGIKLHEL 209

Query: 171 NLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG----QIPQLTELHSLSKFDVSYNNLS 225
            L  NF S +I +    NL  +    L   +       +I + + +  L    +    L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 42/231 (18%), Positives = 69/231 (29%), Gaps = 27/231 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALL----LKGNYLQGPIPHQLCQLRKLSIMDL 57
           + L  +DL  NY        +        +     +  N +   I  Q  Q  KL  + L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTL 211

Query: 58  SHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRT 117
             N  + +I       L        L+       +F  E     +  ++   L       
Sbjct: 212 RGNFNSSNIMKTCLQNL------AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAG---LDLSSNELTGDISSEIGDLRNIHGLNLSH 174
                    +T     S   V    +A    + L+   +      ++        L++  
Sbjct: 266 FR-------LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIR 316

Query: 175 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
             L          LK   SL L+ NK +    +   L SLS  D+S N LS
Sbjct: 317 CQLKQFPTLDLPFLK---SLTLTMNKGS-ISFKKVALPSLSYLDLSRNALS 363

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
                 +L+  +  +I    +   ++LS N L      SFSN   ++ LDLS  ++    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 206 PQ-LTELHSLSKFDVSYNNLSCPIPD 230
            +    LH LS   ++ N +    P 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPG 98

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 3e-17
 Identities = 35/228 (15%), Positives = 71/228 (31%), Gaps = 5/228 (2%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           ++L  L+++           +    ++  L L  +     +      L  +  ++L    
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L     S +            L        D    ++       + LS    D  TL+  
Sbjct: 208 LARFQFSPLPVDEVSSPMK-KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
              N    +       V    +  L +    L  D+S+    L  +  + + ++ +    
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQ----LTELHSLSKFDVSYNNLS 225
                +LK +E LDLS N +  +  +         SL    +S N+L 
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 30/251 (11%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-----------PIPHQLCQLRKL 52
           +  L L  +  +  +    +  S++R L L+   L               P +    R  
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 53  SIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGL----------VERGRDFDLEDIYNYY 102
            + D S N L   +   I  L   +  +  L GL          V      +   I   +
Sbjct: 234 VLTDESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 103 NSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAG---LDLSSNELTGDI-- 157
                L  D S   +L  +V    +  ++         +++     LDLS N +  +   
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 158 -SSEIGDLRNIHGLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSL 214
            S+  G   ++  L LS N L       E    LK + SLD+S N  +           +
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412

Query: 215 SKFDVSYNNLS 225
              ++S   + 
Sbjct: 413 RFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 39/233 (16%), Positives = 81/233 (34%), Gaps = 31/233 (13%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           +A++ LDL  N  +      +   +NL+ L+LK + +          L  L  +DLS N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           L     S +++  F  + +              L+ +    N   T+ ++    +   L 
Sbjct: 86  L-----SSLSSSWFGPLSS--------------LKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
           T   +       +   + +    +  L   ++ +  L    S  +  +R+IH L L  + 
Sbjct: 127 T---LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLN----GQIPQLTELHSLSKFDVSYNNLS 225
            +  +      L  +  L+L    L       +P       + K     + L+
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 45/239 (18%), Positives = 89/239 (37%), Gaps = 31/239 (12%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQ-LRKLSIMDLSHNRL 62
           +  L +   Y    +    +    ++ + ++ + +   +P    Q L+ L  +DLS N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLM 346

Query: 63  ------NGSIPSCITNLLFWKVGNGDLYGLVERGRDFD----LEDIYNYYN--STVPLSL 110
                 N +      +L    +    L  + + G        L  +    N    +P S 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406

Query: 111 DRSDT-RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHG 169
              +  R L+       ++       K  I + +  LD+S+N L    S  +  L+    
Sbjct: 407 QWPEKMRFLN-------LSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQE--- 455

Query: 170 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
           L +S N L  ++P++ S   ++  + +S N+L   +P      L SL K  +  N   C
Sbjct: 456 LYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 511

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 36/253 (14%), Positives = 87/253 (34%), Gaps = 32/253 (12%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSH 59
           S+L+ L+L  N +       +  + +NL+ L +        I       L  L+ +++  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 60  NRLNG---SIPSCITNLLFWKVGNGDLYGLVERGRDF-------DLEDIYNYYNSTVPLS 109
             L          I ++    +   +   L+E   D        +L D         PL 
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 110 LDRSDTRTLDTQ---------------VVVNFMTKNRYESYKGVILEYMAGLDLSSNELT 154
           +D   +                      ++ ++ +     +    L  +   + S +++ 
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277

Query: 155 GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELH 212
            ++     +   I  L++   +L   +   +S L+ ++ + + ++K+   +P      L 
Sbjct: 278 SELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334

Query: 213 SLSKFDVSYNNLS 225
           SL   D+S N + 
Sbjct: 335 SLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDLS N++T     ++    N+  L L  + ++    ++F +L  +E LDLS N L+  +
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SL 89

Query: 206 PQ--LTELHSLSKFDVSYNNLSCPIPDKEQFS 235
                  L SL   ++  N     +     F 
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 146 LDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN-- 202
           L L S+ +   I  +    L ++  L+LS N LS      F  L  ++ L+L  N     
Sbjct: 55  LILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113

Query: 203 GQIPQLTELHSLSKFDVSYNNLSCPIPD 230
           G       L +L    +        I  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRR 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
            D  S   T  I S +     +  L+LS N ++            ++ L L  +++N  I
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 206 PQ--LTELHSLSKFDVSYNNLS 225
                  L SL   D+S N+LS
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLS 87

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 8e-17
 Identities = 69/344 (20%), Positives = 111/344 (32%), Gaps = 39/344 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L++L+L  N               +  + L+ N++          L KL  +DL  N 
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 62  LNG-SIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
           L        I ++         L  +        L +        +   L     + L  
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI- 432

Query: 121 QVVVNFMTKNRYESYKGVILEYMAG----LDLSSNELTGDISSEI-----GDLRNIHGLN 171
                 + +NR+ S  G            L L  N L     +E+       L ++  L 
Sbjct: 433 ------LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 172 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK 231
           L+HN+L+   P  FS+L  +  L L+ N+L   +       +L   D+S N L  P PD 
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDV 545

Query: 232 EQ-----------------FSTFDESSYRGNLNLCCPPINKSCTNLPELLETS----SKG 270
                               STF       N+ +  PP +  C         S    S  
Sbjct: 546 FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

Query: 271 PEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYF 314
             DE  V     +  F+   VT+ L L+ IL V  +    +  +
Sbjct: 606 GCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 1e-15
 Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 9/231 (3%)

Query: 2   SALEILDLRDNYFSG-RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLR--KLSIMDLS 58
            AL  LDL  N      +     + ++L+++    N +     H+L  L+   LS   L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 59  HNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTR 116
            N L   +       +     N  L  L   G  + ++   N+ N  S            
Sbjct: 183 ANSLYSRVSVDWGKCM-NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
            +      + +      ++ G+    +  LDLS   +    S     L+++  LNL++N 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLS 225
           ++    E+F  L  ++ L+LS+N L  ++       L  ++  D+  N+++
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 47/254 (18%), Positives = 83/254 (32%), Gaps = 35/254 (13%)

Query: 2   SALEILDLRDNYFSGRIPYGI---NEHSNLRALLLKGNYLQGPIPHQLCQLRK------L 52
           ++L+ +D   N     +        +   L    L  N L   +     +         L
Sbjct: 148 NSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 53  SIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDR 112
            I+D+S N     I    +N +        +      G  F   +I +   +T    L R
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA-GLAR 265

Query: 113 SDTRTLD-----------------TQVVVNFMTKNRYESYKGVILEYMAGL---DLSSNE 152
           S  R LD                   + V  +  N+           +  L   +LS N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 153 LTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELH 212
           L    SS    L  +  ++L  N ++    ++F  L+ +++LDL  N L      +  + 
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIP 381

Query: 213 SLSKFDVSYNNLSC 226
           S+    +S N L  
Sbjct: 382 SIPDIFLSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 43/240 (17%), Positives = 68/240 (28%), Gaps = 52/240 (21%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQ-LRKLSIMDLSHN 60
           +  E L L  NY              L+ L L   Y    I  +  + L  L I+DL  +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
           ++    P     L                   F L ++  Y+       L     R L  
Sbjct: 84  KIYFLHPDAFQGL-------------------FHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-DISSEIGDLRNIHGLNLSHNFLSG 179
                              L     LDLS N++    +    G L ++  ++ S N +  
Sbjct: 125 -------------------LTR---LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 180 SIPESFSNLKM--IESLDLSHNKLNGQIP-------QLTELHSLSKFDVSYNNLSCPIPD 230
                   L+   +    L+ N L  ++               L   DVS N  +  I  
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 146 LDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204
           L+L S      I  E   +L N+  L+L  + +    P++F  L  +  L L    L+  
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 205 IPQ---LTELHSLSKFDVSYNNLSCPIPDKEQFS 235
           + +      L +L++ D+S N +   +     F 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSFG 145

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 46/260 (17%), Positives = 75/260 (28%), Gaps = 40/260 (15%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             L++L+L   Y    I         NLR L L  + +    P     L  L  + L   
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107

Query: 61  RL-----NGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLE-----DIYNYYNSTVP--- 107
            L            +  L    +    +  L        L      D  +     V    
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 108 -LSLDRSDTRTLD-----TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDI---- 157
              L                  V+         ++ ++LE    LD+S N  T DI    
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI---LDVSGNGWTVDITGNF 224

Query: 158 -----SSEIGDLRNIH---GLNLSHNFLSGSIPESFSNLKM--IESLDLSHNKLNGQIPQ 207
                 S+   L   H   G     + +      +F+ L    +  LDLSH  +   +  
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNS 283

Query: 208 LT--ELHSLSKFDVSYNNLS 225
                L  L   +++YN ++
Sbjct: 284 RVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
                  LT  +      L     L LS N++      SF  L+ ++ L+L        I
Sbjct: 9   AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 206 PQ--LTELHSLSKFDVSYNNLS 225
            +     L +L   D+  + + 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIY 86

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 46/267 (17%), Positives = 86/267 (32%), Gaps = 31/267 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + LE+L+L  N     +   +   S LR L L  NY+Q     +L     +  +  ++N 
Sbjct: 58  TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN 110

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           ++    S         + N  +             D          L L  ++  T++  
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKI-------TMLRDLDEGCRSRVQY-LDLKLNEIDTVNFA 162

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
            +                LE+   L+L  N +  D+  ++     +  L+LS N L+  +
Sbjct: 163 ELAASSDT----------LEH---LNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FM 206

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS 241
              F +   +  + L +NKL      L    +L  FD+  N   C              +
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 242 YRGNLNLCCPPINKSCTNLPELLETSS 268
                       N+    +P L    +
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 39/229 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           +  +I  + D+     +        N++ L L GN L       L    KL +++LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPL--SLDRSDTRT 117
           L                   DL  L        L  +    N    + +  S+      T
Sbjct: 70  LY-ETL--------------DLESLST------LRTLDLNNNYVQELLVGPSI-----ET 103

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
           L           N          +    + L++N++T     + G    +  L+L  N +
Sbjct: 104 LH-------AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 178 SG-SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
              +  E  ++   +E L+L +N +   +        L   D+S N L+
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 39/253 (15%), Positives = 73/253 (28%), Gaps = 53/253 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
            ++E L   +N  S R+          + + L  N +            ++  +DL  N 
Sbjct: 99  PSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           ++              V   +L    +      LE +   YN    V             
Sbjct: 156 ID-------------TVNFAELAASSDT-----LEHLNLQYNFIYDVK------------ 185

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                             V+   +  LDLSSN+L   +  E      +  ++L +N L  
Sbjct: 186 ----------------GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE 239
            I ++    + +E  DL  N  +    +     +     V+   +       E+  T   
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 240 SSYRGNLNLCCPP 252
             + G       P
Sbjct: 288 LGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSL 214
           I     +        ++ + L  ++     +   ++ LDLS N L+ QI    L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 215 SKFDVSYNNLS 225
              ++S N L 
Sbjct: 61  ELLNLSSNVLY 71

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 4e-16
 Identities = 47/281 (16%), Positives = 86/281 (30%), Gaps = 35/281 (12%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             ++ LDL  N  S      +   + L  L L  N L   +   L  L  L  +DL++N 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91

Query: 62  LNGSIPSCITNL--------LFWKVGNGDLYGLVE------RGRDFDLEDIYNYYNSTVP 107
           +   +     ++           +V      G         +       D          
Sbjct: 92  VQ-ELLVG-PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY- 148

Query: 108 LSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNI 167
           L L  ++  T++   +                LE+   L+L  N +  D+  ++     +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDT----------LEH---LNLQYNFIY-DVKGQVV-FAKL 193

Query: 168 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227
             L+LS N L+  +   F +   +  + L +NKL      L    +L  FD+  N   C 
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 228 IPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSS 268
                        +            N+    +P L    +
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 4e-16
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 35/227 (15%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           +  +I  + D+     +        N++ L L GN L       L    KL +++LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 62  LNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPL-SLDRSDTRTLD 119
           L  ++    ++ L                 R  DL    NY    +   S+      TL 
Sbjct: 70  LYETLDLESLSTL-----------------RTLDLN--NNYVQELLVGPSI-----ETLH 105

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                     N          +    + L++N++T     + G    +  L+L  N +  
Sbjct: 106 -------AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 180 -SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
            +  E  ++   +E L+L +N +   +        L   D+S N L+
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 40/255 (15%), Positives = 74/255 (29%), Gaps = 53/255 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
            ++E L   +N  S R+          + + L  N +            ++  +DL  N 
Sbjct: 99  PSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           ++              V   +L    +      LE +   YN    V   +         
Sbjct: 156 ID-------------TVNFAELAASSDT-----LEHLNLQYNFIYDVKGQV--------- 188

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                    K          L+    LDLSSN+L   +  E      +  ++L +N L  
Sbjct: 189 ------VFAK----------LKT---LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE 239
            I ++    + +E  DL  N  +    +     +     V+   +       E+  T   
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 240 SSYRGNLNLCCPPIN 254
             + G       P  
Sbjct: 288 LGHYGAYCCEDLPAP 302

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 26/248 (10%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L+ LDL  N  +  +       + +  + L+ N L   I   L   + L   DL  N 
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
                  C T   F+                  ++ +       +    +   T      
Sbjct: 249 F-----HCGTLRDFFSKNQ-------------RVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSS--NELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                           +I        L S     T  +  E  +      ++        
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFDVSYNNLSCPIPDKEQFS 235
            I +     +   +L+     L+ Q+        EL    +  V    L     ++    
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 236 TFDESSYR 243
                  R
Sbjct: 411 LLRAIVKR 418

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLS 215
           I     +        ++ + L  ++     +   ++ LDLS N L+      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 216 KFDVSYNNLS 225
             ++S N L 
Sbjct: 62  LLNLSSNVLY 71

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 27/245 (11%), Positives = 65/245 (26%), Gaps = 56/245 (22%)

Query: 2   SALEILDLRDNYFSGRIPYG--INEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
           S ++ LDL+ N     + +         L  L L+ N++   +  Q+    KL  +DLS 
Sbjct: 144 SRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSS 200

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRT 117
           N+L   +     +                      +  I    N    +  +L       
Sbjct: 201 NKLA-FMGPEFQSA-------------------AGVTWISLRNNKLVLIEKALRF----- 235

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                                  + +   DL  N      +      +N     ++   +
Sbjct: 236 ----------------------SQNLEHFDLRGNGFHCG-TLRDFFSKNQRVQTVAKQTV 272

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNG-QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFST 236
                ++     +                P    L +L + + +  +      ++ +   
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 237 FDESS 241
            +++ 
Sbjct: 333 ENQAR 337

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 43/232 (18%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L+ + +        +P  + + + L  L L  N L+  +P  +  L +L  + +    
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACP 161

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS--TVPLSLDRSDTRTLD 119
               +P  +                 E     +L+ +   +    ++P S+         
Sbjct: 162 ELTELPEPL----------ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN------- 204

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                               L+ +  L + ++ L+  +   I  L  +  L+L       
Sbjct: 205 --------------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPD 230
           + P  F     ++ L L        +P  +  L  L K D+        +P 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 26/206 (12%), Positives = 54/206 (26%), Gaps = 50/206 (24%)

Query: 26  SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYG 85
           S    L  +G+    P    L Q ++    D +         +   N             
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNP------------ 58

Query: 86  LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAG 145
                    +E             L+ +                                
Sbjct: 59  --------QIETRTGRALKATADLLEDATQPGRVA------------------------- 85

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L+L S  L      +   L ++  + +    L   +P++      +E+L L+ N L   +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 206 PQ-LTELHSLSKFDVSYNNLSCPIPD 230
           P  +  L+ L +  +        +P+
Sbjct: 143 PASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 146 LDLSS-NELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204
           L L   + L   +  +I  L  +  L+L        +P   + L     + +  +     
Sbjct: 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 205 IPQL 208
               
Sbjct: 317 DQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHN 60
             LE LDLR        P      + L+ L+LK  + L   +P  + +L +L  +DL   
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGC 287

Query: 61  RLNGSIPSCITNL 73
                +PS I  L
Sbjct: 288 VNLSRLPSLIAQL 300

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 4e-15
 Identities = 45/231 (19%), Positives = 70/231 (30%), Gaps = 45/231 (19%)

Query: 2   SALEILDLRDNYFSGRIPY----GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDL 57
             L IL+LR+  ++ R  +           L+ L +   +       Q+     LS +DL
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 58  SHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRT 117
           S N   G         L   +       L                     L+L  +   T
Sbjct: 181 SDNPELGERG------LISALCPLKFPTLQV-------------------LALRNAGMET 215

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD-LRNIHGLNLSHNF 176
                      + +        L+    LDLS N L     +   D    ++ LNLS   
Sbjct: 216 PSGVCSALAAARVQ--------LQG---LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227
           L        + L     LDLS+N+L+   P   EL  +    +  N     
Sbjct: 265 LKQVPKGLPAKL---SVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 5e-13
 Identities = 39/232 (16%), Positives = 76/232 (32%), Gaps = 27/232 (11%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQL---RKLSIMDLSHNRLN 63
           L   D          I +  +L+ L ++   +   I     ++     L  + L +  + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTV-PLSLDRSDTRTLDTQV 122
           G+ P  +       +   +L  +    RD  L ++  +    +  LS+ ++ +     + 
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 123 VVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDI----SSEIGDLRNIHGLNLSHNF-- 176
           V  F             L     LDLS N   G+     +        +  L L +    
Sbjct: 169 VRVFPA-----------LST---LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 177 -LSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELH--SLSKFDVSYNNLS 225
             SG      +    ++ LDLSHN L       +      L+  ++S+  L 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 52/207 (25%)

Query: 1   DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG--PIPHQLC--QLRKLSIMD 56
              L++L +   +        +     L  L L  N   G   +   LC  +   L ++ 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 57  LSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSD 114
           L +  +  +     + L   +V                L+ +   +N       +     
Sbjct: 208 LRNAGME-TPSGVCSALAAARVQ---------------LQGLDLSHNSLRDAAGAPSCDW 251

Query: 115 TRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH 174
              L++                         L+LS   L   +   +     +  L+LS+
Sbjct: 252 PSQLNS-------------------------LNLSFTGLKQ-VPKGL--PAKLSVLDLSY 283

Query: 175 NFLSGSIPESFSNLKMIESLDLSHNKL 201
           N L    P S   L  + +L L  N  
Sbjct: 284 NRLD-RNP-SPDELPQVGNLSLKGNPF 308

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 42/227 (18%), Positives = 96/227 (42%), Gaps = 19/227 (8%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  ++  +N  +   P  +   + L  +L+  N +    P  L  L  L+ + L +N+
Sbjct: 68  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123

Query: 62  LNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDR-SDTRTLD 119
           +    P   +TNL   ++ +  +  +        L+ +      T    L   +    LD
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183

Query: 120 TQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                  ++ N+      +  L  +  L  ++N+++    + +G L N+  L+L+ N L 
Sbjct: 184 -------ISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLK 234

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
                + ++L  +  LDL++N+++  +  L+ L  L++  +  N +S
Sbjct: 235 D--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQIS 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 49/263 (18%), Positives = 93/263 (35%), Gaps = 36/263 (13%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + LE L   +N  S   P  +   +NL  L L GN L+      L  L  L+ +DL++N+
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ 254

Query: 62  LNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
           ++   P S +T L   K+G   +  +        L ++    N              L+ 
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-------------LED 301

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS 180
              ++ +    Y             L L  N ++    S +  L  +  L   +N +S  
Sbjct: 302 ISPISNLKNLTY-------------LTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD- 345

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDES 240
              S +NL  I  L   HN+++  +  L  L  +++  ++    +    + +   +   +
Sbjct: 346 -VSSLANLTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 241 SYRGNLNLCCPPINKSCTNLPEL 263
                  L  P       +  E 
Sbjct: 404 VKNVTGALIAPATISDGGSYTEP 426

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 35/226 (15%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L  L L +N  +   P  +   +NL  L L  N +       L  L  L  +   +   +
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD 169

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV 123
               + +T L    + +  +  +    +  +LE +    N              +     
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-------------ISDITP 216

Query: 124 VNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE 183
           +  +T           L+    L L+ N+L  DI + +  L N+  L+L++N +S   P 
Sbjct: 217 LGILTN----------LDE---LSLNGNQLK-DIGT-LASLTNLTDLDLANNQISNLAP- 260

Query: 184 SFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP 229
             S L  +  L L  N+++  I  L  L +L+  +++ N L    P
Sbjct: 261 -LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           ++ S+N+LT    + + +L  +  + +++N ++   P   +NL  +  L L +N++   I
Sbjct: 73  INFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-I 127

Query: 206 PQLTELHSLSKFDVSYNNLSCPIP 229
             L  L +L++ ++S N +S    
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 21/226 (9%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L  L+L  N  S      ++  ++L+ L   GN +    P  L  L  L  +D+S N+++
Sbjct: 136 LNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVS 190

Query: 64  G-SIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS-TVPLSLDRSDT-RTLDT 120
             S+ + +TNL      N  +  +   G   +L+++    N      +L        LD 
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD- 249

Query: 121 QVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                 +  N+  +   +  L  +  L L +N+++    S +  L  +  L L+ N L  
Sbjct: 250 ------LANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
             P   SNLK +  L L  N ++   P ++ L  L +     N +S
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVS 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 37/223 (16%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           +  L             G+   +NL  +    N L    P  L  L KL  + +++N++ 
Sbjct: 48  VTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 64  GSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQV 122
              P + +TNL    + N  +          D++ + N  N    L L  +    +    
Sbjct: 104 DITPLANLTNLTGLTLFNNQI---------TDIDPLKNLTNLNR-LELSSNTISDISA-- 151

Query: 123 VVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP 182
            ++ +T  +              L   +          + +L  +  L++S N +S    
Sbjct: 152 -LSGLTSLQQ-------------LSFGNQVTD---LKPLANLTTLERLDISSNKVSD--I 192

Query: 183 ESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
              + L  +ESL  ++N+++  I  L  L +L +  ++ N L 
Sbjct: 193 SVLAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLK 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
             L    +T  +S    DL  +  L      +     +    L  +  ++ S+N+L   I
Sbjct: 29  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTD-I 83

Query: 206 PQLTELHSLSKFDVSYNNLSCPIP 229
             L  L  L    ++ N ++   P
Sbjct: 84  TPLKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
             ++ +     I +    L       L    ++ ++    ++L  + +L      +   I
Sbjct: 6   ATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I 61

Query: 206 PQLTELHSLSKFDVSYNNLSCPIP 229
             +  L++L++ + S N L+   P
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP 85

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 41/229 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  L L  N  S   P  +   + L  L L  N L+   P  +  L+ L+ + L  N 
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           ++   P  +++L                     L+ ++ Y N  S V    + ++   L 
Sbjct: 321 ISDISP--VSSLT-------------------KLQRLFFYNNKVSDVSSLANLTNINWLS 359

Query: 120 TQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                     N+      +  L  +  L L+    T    +      N+   N   N   
Sbjct: 360 -------AGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY---KANVSIPNTVKNVTG 409

Query: 179 GSI-PESFSNLKMIESLDLSHNKLNGQIPQLT-ELHSLSKFDVSYNNLS 225
             I P + S+       D++ N  +    +++                S
Sbjct: 410 ALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 30/208 (14%), Positives = 65/208 (31%), Gaps = 34/208 (16%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           +AL  L+L +N      P  I+   NL  L L  N +    P  +  L KL  +   +N+
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342

Query: 62  LNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
           ++     + +TN+ +   G+  +  L        +  +     +     ++     ++  
Sbjct: 343 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSI-- 400

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLSG 179
                                     +   N     I+ + I D  +    +++ N  S 
Sbjct: 401 -------------------------PNTVKNVTGALIAPATISDGGSYTEPDITWNLPS- 434

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQ 207
              E         ++       +G + Q
Sbjct: 435 YTNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 49/239 (20%)

Query: 4   LEILDLRDN--YFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           LE LDL  N   F G         ++L+ L L  N +   +      L +L  +D  H+ 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L       +   L                   +L  +   +          +     +  
Sbjct: 408 LKQMSEFSVFLSLR------------------NLIYLDISHTH-----TRVAFNGIFNG- 443

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGS 180
                ++           LE    L ++ N    +   +I  +LRN+  L+LS   L   
Sbjct: 444 -----LSS----------LEV---LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237
            P +F++L  ++ L+++ N+L   +P      L SL K  +  N   C  P  +  S +
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 20/243 (8%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQ-LRKLSIMDL------SH 59
           LDL  N  +  I  G  +   L  L L+ N+    +     Q L  L +  L      + 
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
             L     S +  L    +    L  L       D+ D++N   +    SL       + 
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYL--DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 120 TQVVVNFMTK-----NRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH 174
                           ++  +  + L+ +  L  +SN+     S    DL ++  L+LS 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSR 356

Query: 175 NFLS--GSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKE 232
           N LS  G   +S      ++ LDLS N +         L  L   D  ++NL   + +  
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFS 415

Query: 233 QFS 235
            F 
Sbjct: 416 VFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 47/253 (18%), Positives = 85/253 (33%), Gaps = 53/253 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L++LDL                S+L  L+L GN +Q         L  L  +      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           L       I +L                     L+++   +N   +  L    S+   L+
Sbjct: 112 LASLENFPIGHLKT-------------------LKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHG----LNLSHN 175
                                     LDLSSN++     +++  L  +      L+LS N
Sbjct: 153 H-------------------------LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFS 235
            ++   P +F  ++ +  L L +N  +  + + T +  L+  +V    L     ++    
Sbjct: 188 PMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGE-FRNEGNLE 244

Query: 236 TFDESSYRGNLNL 248
            FD+S+  G  NL
Sbjct: 245 KFDKSALEGLCNL 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDLS N L    S        +  L+LS   +      ++ +L  + +L L+ N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 206 PQ-LTELHSLSKFDVSYNNLS 225
               + L SL K      NL+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 39/229 (17%), Positives = 69/229 (30%), Gaps = 44/229 (19%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  L L  N          +  S+L+ L+     L       +  L+ L  ++++HN 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           +     S      F  + N              LE +    N      +       L   
Sbjct: 136 IQ----SFKLPEYFSNLTN--------------LEHLDLSSN-----KIQSIYCTDLR-- 170

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                + +    +           LDLS N +   I         +H L L +NF S ++
Sbjct: 171 ----VLHQMPLLNLS---------LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 182 PE-SFSNLKMIESLDLSHNKL--NGQIPQLTE--LHSLSKFDVSYNNLS 225
            +     L  +E   L   +    G + +  +  L  L    +    L+
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 37/224 (16%), Positives = 71/224 (31%), Gaps = 36/224 (16%)

Query: 18  IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWK 77
           IP  +    + + L L  N L+    +      +L ++DLS   +  +I           
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE---------- 68

Query: 78  VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD--TQVVVNFMTKNRYESY 135
             +G    L        L  +    N      +           + +      +    S 
Sbjct: 69  --DGAYQSLSH------LSTLILTGN-----PIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 136 KGVILEYMAGL---DLSSNELT-GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLK-- 189
           +   + ++  L   +++ N +    +     +L N+  L+LS N +          L   
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 190 --MIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK 231
             +  SLDLS N +N   P   +   L K  +  N  S  +   
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 44/283 (15%), Positives = 84/283 (29%), Gaps = 62/283 (21%)

Query: 4   LEILDLRDNYFSGRIPYGI-------NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMD 56
           L  L LR+N+ S  +             H  +         L+      L  L  L+I +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 57  LSHNRLNGS------IPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPL-- 108
                L+        + +C+TN+  + + +  +  + +   +F  + +            
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 109 -------SLDRSDTRTLDTQVVV------------NFMTKNRYESYKGVILEYMAGLDLS 149
                   L  +  +  +    V            N ++     S        +  LDLS
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 150 SNELTGDISSEIGDLRNIH-------------------------GLNLSHNFLSGSIPES 184
            N +   +SS    L  +                           L++SH     +    
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 185 FSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLS 225
           F+ L  +E L ++ N           TEL +L+  D+S   L 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 147 DLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206
                     I   +    +   L+LS N L      SF +   ++ LDLS  ++   I 
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE 68

Query: 207 Q--LTELHSLSKFDVSYNNLS 225
                 L  LS   ++ N + 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQ 89

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             LE LD + +       + +     NL  L +   + +         L  L ++ ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 61  RLNGSIPS 68
               +   
Sbjct: 456 SFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             L  LDL       ++     N  S+L+ L +  N L+        +L  L  + L  N
Sbjct: 470 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 61  RLNGSIPS 68
             + S P 
Sbjct: 529 PWDCSCPR 536

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 55/269 (20%), Positives = 95/269 (35%), Gaps = 31/269 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             L +L L  N  S  +P GI  +   L  L +  N L+            L  + LS N
Sbjct: 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGL------------------VERGRDFDLEDIYNYY 102
           RL     S I +L    V    L  L                  V    + +L  +   +
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235

Query: 103 N--STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE 160
           N  +     L+      +D  +  N + K  Y  +    ++ +  L +S+N L   ++  
Sbjct: 236 NNLTDTAWLLNYPGLVEVD--LSYNELEKIMYHPFVK--MQRLERLYISNNRLV-ALNLY 290

Query: 161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS 220
              +  +  L+LSHN L   +  +      +E+L L HN +   +  L+  H+L    +S
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLS 347

Query: 221 YNNLSCPIPDKEQFSTFDESSYRGNLNLC 249
           +N+  C    +  F      +       C
Sbjct: 348 HNDWDC-NSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 20/230 (8%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             ++ L +  N     +P  + ++   L  L+L+ N L            KL+ + +S+N
Sbjct: 93  HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151

Query: 61  RLNGSIPSCI----TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTR 116
            L   I        T+L   ++ +  L  + +      L      YN    L++  +   
Sbjct: 152 NLE-RIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLSTLAIPIA-VE 208

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
            LD        + N     +G +   +  L L  N LT   ++ + +   +  ++LS+N 
Sbjct: 209 ELD-------ASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE 259

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLS 225
           L   +   F  ++ +E L +S+N+L   +      + +L   D+S+N+L 
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 41/229 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             +E+L+L D      I          ++ L +  N ++   PH    +  L+++ L  N
Sbjct: 69  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDT--R 116
            L     S +   +F                   L  +    N    +     ++ T  +
Sbjct: 128 DL-----SSLPRGIFHNTPK--------------LTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
            L        ++ NR       ++  +   ++S N L+      +     +  L+ SHN 
Sbjct: 169 NLQ-------LSSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           ++         L     L L HN L      L     L + D+SYN L 
Sbjct: 217 INVVRGPVNVELT---ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 26  SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYG 85
           +N + +  K + ++      L   R++ +++L+  ++   I                   
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EID------------------ 85

Query: 86  LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAG 145
                        + Y ++   L +  +  R L   V  N              +  +  
Sbjct: 86  ----------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--------------VPLLTV 121

Query: 146 LDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204
           L L  N+L+  +   I  +   +  L++S+N L     ++F     +++L LS N+L   
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 205 IPQLTELHSLSKFDVSYNNLS 225
           +  L+ + SL   +VSYN LS
Sbjct: 180 VD-LSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 146 LDLSSNELTGDISS--EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 203
            D+  +  T D+    E   L N   +   ++ +         + + +E L+L+  ++  
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 82

Query: 204 QIPQ--LTELHSLSKFDVSYNNLS 225
           +I        H++ K  + +N + 
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIR 106

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 7e-14
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 35/227 (15%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           +   +L++ ++  +  +P  +   +++  L++  N L   +P    +LR L   ++S N+
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTL---EVSGNQ 92

Query: 62  LNGSIPSCI---TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL 118
           L  S+P        L  +      L  L        L  ++ + N    L +     + L
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPVLPPGLQEL 146

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                   ++ N+  S   +    +  L   +N+LT  +      L+    L++S N L+
Sbjct: 147 S-------VSDNQLASLPALP-SELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLA 194

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
            S+P   S L     L   +N+L   +P L     L +  VS N L+
Sbjct: 195 -SLPTLPSEL---YKLWAYNNRLT-SLPAL--PSGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.7 bits (160), Expect = 5e-12
 Identities = 47/226 (20%), Positives = 76/226 (33%), Gaps = 54/226 (23%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L  L++  N  +  +P        L        +L    P     L KL    +  N+
Sbjct: 81  PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKL---WIFGNQ 132

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           L  S+P     L    V +  L  L       +L  ++ Y N  +++P+           
Sbjct: 133 LT-SLPVLPPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPMLPSG------- 182

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                               L+    L +S N+L   + +   +L     L   +N L+ 
Sbjct: 183 --------------------LQE---LSVSDNQLA-SLPTLPSELYK---LWAYNNRLT- 214

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           S+P   S LK    L +S N+L       +EL  L    VS N L+
Sbjct: 215 SLPALPSGLK---ELIVSGNRLTSLPVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 34/235 (14%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L  L +  N  +  +P        L+ L +  N L   +P    +L KL      +N+
Sbjct: 121 SGLCKLWIFGNQLT-SLP---VLPPGLQELSVSDNQLAS-LPALPSELCKL---WAYNNQ 172

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGL-VERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
           L  S+P   + L    V +  L  L         L  ++ Y N    L    S  + L  
Sbjct: 173 LT-SLPMLPSGLQELSVSDNQLASLPTLPSE---LYKLWAYNNRLTSLPALPSGLKELI- 227

Query: 121 QVVVNFMTKNRYESYKGVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                 ++ NR  S   +   L+    L +S N LT  +      L +   L++  N L+
Sbjct: 228 ------VSGNRLTSLPVLPSELKE---LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT 274

Query: 179 GSIPESFSNLKMIESLDLSHNKL----NGQIPQLTELHSLSKFDVSYNNLSCPIP 229
             +PES  +L    +++L  N L       + ++T     S   + ++      P
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 8e-10
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L +S N LT  +     +L+    L +S N L+ S+P   S L    SL +  N+L  ++
Sbjct: 226 LIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RL 276

Query: 206 PQ-LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELL 264
           P+ L  L S +  ++  N LS       +  T     Y G +         +      L 
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAP-GYSGPIIRFDMAGASAPRETRALH 335

Query: 265 ETSS 268
             ++
Sbjct: 336 LAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 9e-10
 Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 35/206 (16%)

Query: 26  SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYG 85
           +    L +  + L   +P  L     ++ + +  N L  S+P+    L   +V    L  
Sbjct: 40  NGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLTS 95

Query: 86  L-VERGRDFDLEDIYNYYNS--TVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--L 140
           L V      +L    N       +P  L       L        +  N+  S   +   L
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGL-----CKLW-------IFGNQLTSLPVLPPGL 143

Query: 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 200
           +    L +S N+L   + +   +L     L   +N L+ S+P   S L+    L +S N+
Sbjct: 144 QE---LSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQ---ELSVSDNQ 192

Query: 201 LNGQIPQLTELHSLSKFDVSYNNLSC 226
           L   +P  T    L K     N L+ 
Sbjct: 193 LA-SLP--TLPSELYKLWAYNNRLTS 215

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 32/189 (16%), Positives = 73/189 (38%), Gaps = 28/189 (14%)

Query: 45  QLCQLRKLSIMDLSHNRLNGSIPSCI-TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN 103
           + C     +++++  + L  ++P C+  ++    + + +L  L       +L  +    N
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPP--ELRTLEVSGN 91

Query: 104 --STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161
             +++P+            ++ +         +    +   +  L +  N+LT  +    
Sbjct: 92  QLTSLPVLPPGL------LELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVLP 140

Query: 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSY 221
             L+    L++S N L+ S+P   S L     L   +N+L   +P       L +  VS 
Sbjct: 141 PGLQE---LSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLP--MLPSGLQELSVSD 190

Query: 222 NNLSCPIPD 230
           N L+  +P 
Sbjct: 191 NQLAS-LPT 198

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L+ L + DN  +  +P      S L  L    N L   +P     L++L    +S N+
Sbjct: 141 PGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS-LPMLPSGLQEL---SVSDNQ 192

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           L  S+P+  + L      N  L  L        L+++    N  +++P+    S+ + L 
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPALPSG--LKELIVSGNRLTSLPVLP--SELKELM 247

Query: 120 TQVVVNFMTKNRYESYKGVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                  ++ NR  S   +   L     L +  N+LT  +   +  L +   +NL  N L
Sbjct: 248 -------VSGNRLTSLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237
           S    ++   +           + +                 +   +     +      +
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

Query: 238 DE 239
             
Sbjct: 357 HM 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 21/230 (9%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             L +L L  N  S  +P GI  +   L  L +  N L+            L  + LS N
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYG--LVERGRDFDLEDIYNYYN--STVPLSLDRSDTR 116
           RL     + +   L   + + ++    L        +E++   +N  + V   ++     
Sbjct: 182 RL-----THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE-LT 235

Query: 117 TLDTQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175
            L        +  N       ++    +  +DLS NEL   +      ++ +  L +S+N
Sbjct: 236 ILK-------LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
            L  ++      +  ++ LDLSHN L        +   L    + +N++ 
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 4e-12
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 18/228 (7%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             L  L + +N    RI     +  ++L+ L L  N L       +  L      ++S+N
Sbjct: 147 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---NVSYN 202

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTL 118
            L+ ++   I  +      +  +  +V    + +L  +   +N  +     L+      +
Sbjct: 203 LLS-TLAIPI-AVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 259

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
           D  +  N + K  Y  +    ++ +  L +S+N L   ++     +  +  L+LSHN L 
Sbjct: 260 D--LSYNELEKIMYHPFVK--MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC 226
             +  +      +E+L L HN +   +  L+  H+L    +S+N+  C
Sbjct: 315 -HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWDC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.9 bits (150), Expect = 9e-11
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 20/230 (8%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             ++ L +  N     +P  + ++   L  L+L+ N L            KL+ + +S+N
Sbjct: 99  HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157

Query: 61  RLNGSIPSCI----TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTR 116
            L   I        T+L   ++ +  L   V+      L      YN    L++  +   
Sbjct: 158 NLE-RIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIA-VE 214

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
            LD        + N     +G +   +  L L  N LT D +  + +   +  ++LS+N 
Sbjct: 215 ELD-------ASHNSINVVRGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNE 265

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLS 225
           L   +   F  ++ +E L +S+N+L   +      + +L   D+S+N+L 
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 41/229 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             +E+L+L D      I          ++ L +  N ++   PH    +  L+++ L  N
Sbjct: 75  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDT--R 116
            L+ S+P             G  +   +      L  +    N    +     ++ T  +
Sbjct: 134 DLS-SLPR------------GIFHNTPK------LTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
            L        ++ NR       ++  +   ++S N L+      +     +  L+ SHN 
Sbjct: 175 NLQ-------LSSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 222

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           ++         L     L L HN L      L     L + D+SYN L 
Sbjct: 223 INVVRGPVNVELT---ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 32/232 (13%), Positives = 83/232 (35%), Gaps = 44/232 (18%)

Query: 4   LEILDLRDNYFSGRIPYGINEH--SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
               D+  +  +  + +G  +   +N + +  K + ++      L   R++ +++L+  +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDT--RT 117
           +   I +                          ++ +Y  +N    +P  + ++      
Sbjct: 87  IE-EIDT------------YAFAYAHT------IQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEI-GDLRNIHGLNLS 173
           L        + +N   S    I      L    +S+N L   I  +      ++  L LS
Sbjct: 128 LV-------LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
            N L+  +    S +  +   ++S+N     +  L    ++ + D S+N+++
Sbjct: 180 SNRLT-HVD--LSLIPSLFHANVSYN----LLSTLAIPIAVEELDASHNSIN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 49/229 (21%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
              L+L +   S  +P       +L +L+   N L   +P     L+ L + + +   L+
Sbjct: 73  AHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQ 121
             +P  +  L    V N  L  L E      L+ I    N    +P              
Sbjct: 128 -DLPPLLEYL---GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS--------- 174

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                             LE+   +   +N+L      E+ +L  +  +   +N L   +
Sbjct: 175 ------------------LEF---IAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KL 210

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
           P+   +L   ES+   +N L  ++P+L  L  L+      N L   +PD
Sbjct: 211 PDLPLSL---ESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD 254

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 30/226 (13%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           S L+I+D+ +N    ++P       +L  +    N L+     +L  L  L+ +   +N 
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS 206

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           L   +P    +L     GN  L  L E      L  IY   N   T+P          L+
Sbjct: 207 LK-KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLP--PSLEALN 263

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                  +  N       +  + +  LD+S N  +G +S    +L     LN S N +  
Sbjct: 264 -------VRDNYLTDLPELP-QSLTFLDVSENIFSG-LSELPPNLYY---LNASSNEIR- 310

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           S+ +   +L   E L++S+NKL  ++P       L +   S+N+L+
Sbjct: 311 SLCDLPPSL---EELNVSNNKLI-ELP--ALPPRLERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 47/243 (19%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L  +   +N    ++P       +L +++   N L+     +L  L  L+ +   +N 
Sbjct: 195 PFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNL 248

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDF-DLEDIYNYYNS--TVPLSLDRSDTRTL 118
           L  ++P    +L    V +  L  L E  +    L+   N ++    +P +L       L
Sbjct: 249 LK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL-----YYL 302

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
           +        + N   S    +   +  L++S+N+L  ++ +    L     L  S N L+
Sbjct: 303 N-------ASSNEIRSLCD-LPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA 350

Query: 179 GSIPESFSNLKMIESLDLSHNKLN---GQIPQLTELH-------------SLSKFDVSYN 222
             +PE   NLK    L + +N L         + +L              +L +  V  N
Sbjct: 351 -EVPELPQNLK---QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406

Query: 223 NLS 225
            L 
Sbjct: 407 PLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 48/224 (21%), Positives = 77/224 (34%), Gaps = 51/224 (22%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L + +      S   P        L  L +  N L+  +P +L     L I+D+ +N L 
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK 166

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQ 121
             +P    +L F   GN  L  L E      L  IY   N    +P              
Sbjct: 167 -KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS--------- 216

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                             LE    +   +N L      E+ +L  +  +   +N L  ++
Sbjct: 217 ------------------LES---IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TL 252

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           P+   +L+   +L++  N L   +P      SL+  DVS N  S
Sbjct: 253 PDLPPSLE---ALNVRDNYLT-DLP--ELPQSLTFLDVSENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 48/210 (22%)

Query: 18  IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWK 77
           I      ++ L+  L   + L   +P +   ++  +    + +    + P          
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 78  VGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQVVVNFMTKNRYESY 135
           V        +    D    ++       S++P                            
Sbjct: 62  VSR------LRDCLDRQAHELELNNLGLSSLPELPPH----------------------- 92

Query: 136 KGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLD 195
               LE    L  S N LT ++      L+++   N +   LS   P        +E L 
Sbjct: 93  ----LES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLG 137

Query: 196 LSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           +S+N+L  ++P+L     L   DV  N+L 
Sbjct: 138 VSNNQLE-KLPELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 39/242 (16%), Positives = 65/242 (26%), Gaps = 61/242 (25%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHS-------------NLRALLLKGNYLQGPIPHQLCQ 48
            +        + +    P G  E                   L L    L   +P     
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH 92

Query: 49  LRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STV 106
           L  L     S N L   +P    +L                     L    N     S +
Sbjct: 93  LESL---VASCNSLT-ELPELPQSLK-------------------SLLVDNNNLKALSDL 129

Query: 107 PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGDISSEIGDLR 165
           P  L       L        ++ N+ E    +    ++  +D+ +N L   +      L 
Sbjct: 130 PPLL-----EYLG-------VSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLE 176

Query: 166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
               +   +N L   +PE   NL  + ++   +N L  ++P      SL       N L 
Sbjct: 177 F---IAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPD--LPLSLESIVAGNNILE 228

Query: 226 CP 227
             
Sbjct: 229 EL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 48/241 (19%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L  +   +N     +P   +   +L AL ++ NYL   +P     L  L   D+S N  +
Sbjct: 239 LTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLTD-LPELPQSLTFL---DVSENIFS 290

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQ 121
             +     NL +    + ++  L +      LE++    N    +P    R     L   
Sbjct: 291 -GLSELPPNLYYLNASSNEIRSLCDLPPS--LEELNVSNNKLIELPALPPRL--ERLI-- 343

Query: 122 VVVNFMTKNRYESYKGVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHG---------- 169
                 + N       +   L+    L +  N L  +       + ++            
Sbjct: 344 -----ASFNHLAEVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPEL 394

Query: 170 ------LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNN 223
                 L++  N L    P+   ++   E L ++  ++        E     + DV  ++
Sbjct: 395 PQNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

Query: 224 L 224
            
Sbjct: 451 H 451

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 32/232 (13%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             L+ L++ DN     I +   +  ++L  L L+   L       L  L  L ++ L H 
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
            +     + I +  F       LY L    +  ++   + Y ++  P  L   +  +L  
Sbjct: 187 NI-----NAIRDYSFK-----RLYRL----KVLEISH-WPYLDTMTPNCLYGLNLTSLS- 230

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEI-GDLRNIHGLNLSHNF 176
                 +T     +   + + ++  L   +LS N ++  I   +  +L  +  + L    
Sbjct: 231 ------ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ 283

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
           L+   P +F  L  +  L++S N+L   + +     + +L    +  N L+C
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 46/241 (19%), Positives = 76/241 (31%), Gaps = 50/241 (20%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
           S L  LD+ +N     +   + +   NL++L +  N L          L  L  + L   
Sbjct: 104 SNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVP----------L 108
            L  SIP+              L  L        L  +   +   + +            
Sbjct: 163 NLT-SIPT------------EALSHLHG------LIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 109 SLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE-IGDLRNI 167
            L+ S    LDT         N         L     L ++   LT  +    +  L  +
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLN---------LTS---LSITHCNLT-AVPYLAVRHLVYL 250

Query: 168 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLS 225
             LNLS+N +S         L  ++ + L   +L   +       L+ L   +VS N L+
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 226 C 226
            
Sbjct: 310 T 310

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 40/236 (16%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
             L  L LR N     IP G+    SNL  L +  N +   + +    L  L  +++  N
Sbjct: 80  FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDT--R 116
            L       I++  F  + +              LE +       +++P           
Sbjct: 139 DL-----VYISHRAFSGLNS--------------LEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIHGLNLS 173
            L        +      + +    + +  L   ++S       ++       N+  L+++
Sbjct: 180 VLR-------LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 174 HNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
           H  L+ ++P  +  +L  +  L+LS+N ++  I    L EL  L +  +    L+ 
Sbjct: 233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV 286

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 54/229 (23%)

Query: 6   ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 65
            +      F   +P GI   +  R L L  N ++     +      L  ++L+ N +   
Sbjct: 15  AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--- 68

Query: 66  IPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVN 125
             S +    F      +L+ L                     L L  +  + +   V   
Sbjct: 69  --SAVEPGAF-----NNLFNLRT-------------------LGLRSNRLKLIPLGVFTG 102

Query: 126 FMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPE- 183
                         L  +  LD+S N++   +   +  DL N+  L +  N L   I   
Sbjct: 103 --------------LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 184 SFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIPD 230
           +FS L  +E L L    L   IP   L+ LH L    + + N++  I D
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA-IRD 193

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 52/242 (21%)

Query: 1   DSALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
            +   +LDL  N     +         +L  L L  N +    P     L  L  + L  
Sbjct: 31  PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVP---------- 107
           NRL       I   +F  + N              L  +    N    +           
Sbjct: 90  NRL-----KLIPLGVFTGLSN--------------LTKLDISENKIVILLDYMFQDLYNL 130

Query: 108 --LSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDL 164
             L +  +D   +  +                  L  +  L L    LT  I +E    L
Sbjct: 131 KSLEVGDNDLVYISHRAFSG--------------LNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI-PQLTELHSLSKFDVSYNN 223
             +  L L H  ++     SF  L  ++ L++SH      + P      +L+   +++ N
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 224 LS 225
           L+
Sbjct: 236 LT 237

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L++ SN+++ DIS  + +L  ++ L L++N L     E    L  + +L LS N +   I
Sbjct: 270 LNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-I 326

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L  +   D +   + 
Sbjct: 327 RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 7e-12
 Identities = 39/233 (16%), Positives = 85/233 (36%), Gaps = 43/233 (18%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           +      L+    +  +     E  ++  L++ G  +       +  L  L  ++L+ N+
Sbjct: 22  AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ 77

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS-TVPLSLDRSDT-RTLD 119
           +    P  ++NL+                    L ++Y   N  T   +L      R L 
Sbjct: 78  ITDISP--LSNLV-------------------KLTNLYIGTNKITDISALQNLTNLRELY 116

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
                  + ++         L  +  +   +L +N    D+ S + ++  ++ L ++ + 
Sbjct: 117 -------LNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK 166

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP 229
           +    P   +NL  + SL L++N++   I  L  L SL  F    N ++   P
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 39/229 (17%), Positives = 94/229 (41%), Gaps = 41/229 (17%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + +  L+L  N+    +   ++  + L  L +  + ++   P  +  L  L  + L++N+
Sbjct: 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

Query: 62  LNGSIP-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
           +    P + +T+L ++      +          D+  + N       L +          
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQIT---------DITPVANMTRLNS-LKIGN-------- 230

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                    N+        L  ++ L   ++ +N+++ DI++ + DL  +  LN+  N +
Sbjct: 231 ---------NKITDLSP--LANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQI 277

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLS 225
           S       +NL  + SL L++N+L  +    +  L +L+   +S N+++
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L + +N++T    S + +L  +  L +  N +S     +  +L  ++ L++  N+++  I
Sbjct: 226 LKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-I 280

Query: 206 PQLTELHSLSKFDVSYNNLSCPIPD 230
             L  L  L+   ++ N L     +
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 34/203 (16%), Positives = 73/203 (35%), Gaps = 37/203 (18%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  L L  N      P  +   ++L       N +    P  +  + +L+ + + +N+
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS-TVPLSLDRSDT-RTLD 119
           +    P  + NL                     L  +    N  +   ++      + L+
Sbjct: 233 ITDLSP--LANLS-------------------QLTWLEIGTNQISDINAVKDLTKLKMLN 271

Query: 120 TQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                  +  N+      +  L  +  L L++N+L  +    IG L N+  L LS N ++
Sbjct: 272 -------VGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 179 GSIPESFSNLKMIESLDLSHNKL 201
              P   ++L  ++S D ++  +
Sbjct: 325 DIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L      +   I     DL       L    ++  +      L+ I  L ++  K+   I
Sbjct: 5   LATLPAPIN-QIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SI 59

Query: 206 PQLTELHSLSKFDVSYNNLSCPIP 229
             +  L +L   +++ N ++   P
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP 83

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 19/80 (23%), Positives = 37/80 (46%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L +   ++T D    +  L ++  L++SH+    SI    + L  + S+DLS+N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L  L   ++ ++ + 
Sbjct: 153 MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL-NGQ 204
           L +++   T + +  I  L N+  L +    ++     + S L  +  LD+SH+   +  
Sbjct: 71  LTINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 205 IPQLTELHSLSKFDVSYNNL 224
           + ++  L  ++  D+SYN  
Sbjct: 129 LTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           ++ L + + + +   P  I+  SNL  L + G  +       L  L  L+++D+SH+  +
Sbjct: 68  IKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 64  GSIPSCITNL 73
            SI + I  L
Sbjct: 126 DSILTKINTL 135

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 203
           +DLS N    DI   +  L  +  LN+  + +         +   +  L      + G
Sbjct: 141 IDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 50/252 (19%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             + +L++  N     +P      ++L  L    N L   +P     L+ L   D+ +N+
Sbjct: 80  PQITVLEITQNALI-SLPELP---ASLEYLDACDNRLST-LPELPASLKHL---DVDNNQ 131

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           L   +P     L +    N  L  L E      LE +    N  + +P   +        
Sbjct: 132 LT-MLPELPALLEYINADNNQLTMLPELPTS--LEVLSVRNNQLTFLPELPES------- 181

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRN----IHGLNLSHN 175
                               LE    LD+S+N L   + +      +            N
Sbjct: 182 --------------------LEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQI-PQLTELHSLSKFDVSYNNLSCPIPDKEQF 234
            ++  IPE+  +L    ++ L  N L+ +I   L++  +   +       S     +   
Sbjct: 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 235 STFDESSYRGNL 246
                 +     
Sbjct: 277 HRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L L+   L+  +   +     I  L ++ N L  S+PE  ++L   E LD   N+L+  +
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TL 115

Query: 206 PQLTELHSLSKFDVSYNNLSCPIPD 230
           P+     SL   DV  N L+  +P+
Sbjct: 116 PE--LPASLKHLDVDNNQLTM-LPE 137

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 33/245 (13%)

Query: 26  SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYG 85
           +    L L    L   +P  L    ++++++++ N L  S+P    +L +    +  L  
Sbjct: 59  NQFSELQLNRLNLSS-LPDNLPP--QITVLEITQNAL-ISLPELPASLEYLDACDNRLST 114

Query: 86  LVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--LE 141
           L        L+ +    N  + +P     +    ++          N+      +   LE
Sbjct: 115 L--PELPASLKHLDVDNNQLTMLPELP--ALLEYIN-------ADNNQLTMLPELPTSLE 163

Query: 142 YMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNL----KMIESLDLS 197
               L + +N+LT  +      L     L++S N L  S+P          +        
Sbjct: 164 V---LSVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 198 HNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKS 256
            N++   IP+ +  L       +  N LS  I +     T     +   +        ++
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 257 CTNLP 261
             + P
Sbjct: 275 TLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 45/181 (24%)

Query: 47  CQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--S 104
           C + + S + L+   L+ S+P  +   +                   ++       N   
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLPPQI----------------TVLEI-----TQNALI 93

Query: 105 TVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL 164
           ++P     +    LD          NR  +   +    +  LD+ +N+LT  +      L
Sbjct: 94  SLPELP--ASLEYLD-------ACDNRLSTLPELPAS-LKHLDVDNNQLT-MLPELPALL 142

Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL 224
                +N  +N L+  +PE  ++L   E L + +N+L   +P+L    SL   DVS N L
Sbjct: 143 EY---INADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPEL--PESLEALDVSTNLL 192

Query: 225 S 225
            
Sbjct: 193 E 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 48/218 (22%)

Query: 18  IPYGINEHSNLRALLLKGNYLQGP--IPHQLCQLRKLSIMDLSHNRLNGSIPSCI-TNLL 74
           I   IN + +L                     +  K ++   + N     +  C+     
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 75  FWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES 134
             ++   +L                    S++P +L       L+       +T+N   S
Sbjct: 63  ELQLNRLNL--------------------SSLPDNL-PPQITVLE-------ITQNALIS 94

Query: 135 YKGVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIE 192
              +   LEY   LD   N L+  +      L++   L++ +N L+  +PE  + L   E
Sbjct: 95  LPELPASLEY---LDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALL---E 143

Query: 193 SLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
            ++  +N+L   +P+L    SL    V  N L+  +P+
Sbjct: 144 YINADNNQLT-MLPEL--PTSLEVLSVRNNQLTF-LPE 177

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 8e-10
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-- 203
           LDLS N L   +   +  LR +  L  S N L  ++    +NL  ++ L L +N+L    
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSA 524

Query: 204 QIPQLTELHSLSKFDVSYNNLSC 226
            I  L     L   ++  N+L  
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 170 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           L+L+H  L+  +      L ++  LDLSHN+L    P L  L  L     S N L 
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 44/230 (19%), Positives = 73/230 (31%), Gaps = 50/230 (21%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQ-LRKLSIMDLSHN 60
           ++L+ LDL  N     +         L  L  + + L+      +   LR L  +D+SH 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
                              NG   GL        LE +    NS      +         
Sbjct: 137 HTR-VAF------------NGIFNGLSS------LEVLKMAGNS----FQENFLPDIFTE 173

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSG 179
                              L  +  LDLS  +L   +S      L ++  LN+SHN    
Sbjct: 174 -------------------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLT---ELHSLSKFDVSYNNLSC 226
                +  L  ++ LD S N +     +        SL+  +++ N+ +C
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 40/230 (17%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 66
           +       +  +P GI   S+   L L+ N LQ        +L +L+ + LS N L+   
Sbjct: 12  IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS--- 65

Query: 67  PSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDT-RTLDTQVV 123
                   F    +   +G         L+ +   +N   T+  +    +    LD    
Sbjct: 66  --------FKGCCSQSDFGTTS------LKYLDLSFNGVITMSSNFLGLEQLEHLD---- 107

Query: 124 VNFMTKNRYES--YKGVI--LEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHN-FL 177
                 +  +      V   L  +  LD+S         + I   L ++  L ++ N F 
Sbjct: 108 ---FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLS 225
              +P+ F+ L+ +  LDLS  +L  Q+       L SL   ++S+NN  
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 51/230 (22%)

Query: 2   SALEILDLRDNYFSGR-IPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
           + L  L L  N  S +      +   ++L+ L L  N +   +      L +L  +D  H
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 110

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
           + L   +       +F  + N              L            L +  + TR   
Sbjct: 111 SNLK-QMSE---FSVFLSLRN--------------LIY----------LDISHTHTRVAF 142

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLS 178
             +    ++           LE    L ++ N    +   +I  +LRN+  L+LS   L 
Sbjct: 143 NGIFNG-LSS----------LEV---LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 179 GSIPE-SFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLS 225
             +   +F++L  ++ L++SHN     +       L+SL   D S N++ 
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKLNG 203
           L+L SN+L          L  +  L+LS N LS  G   +S      ++ LDLS N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFS 235
                  L  L   D  ++NL   + +   F 
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 123

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 19/224 (8%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  LD  ++  +  +  GI + + L  L+   N +   +   L Q   L+ +    N+
Sbjct: 42  ATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNK 96

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
           L     + +T L +       L  L        L  +    N+     +D S    L   
Sbjct: 97  LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNP-LLTYLNCARNTLT--EIDVSHNTQLTEL 153

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                    + +      L     LD S N++T     ++   + ++ LN   N ++  +
Sbjct: 154 DCHLNKKITKLDVTPQTQLTT---LDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KL 206

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
               +    +  LD S NKL  +I  +T L  L+ FD S N L+
Sbjct: 207 D--LNQNIQLTFLDCSSNKLT-EID-VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 23/226 (10%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L  L+   N  +  I   ++ ++ L  L    N     +   +    +L+ +D S N+
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           +     S    L        ++  L +  ++  L  +    N  + + ++     T   D
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLT-YFD 239

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
                   + N         L  +  L     +L      ++     +            
Sbjct: 240 -------CSVNPLTELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIK 289

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
            +    ++   +  LD     +  ++  L++   L    ++   L+
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGIT-ELD-LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 28/202 (13%), Positives = 72/202 (35%), Gaps = 17/202 (8%)

Query: 26  SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVGNGDL 83
            N  + +     +Q        QL  L+ +D  ++ +   +     +T L      + ++
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNI 76

Query: 84  YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYM 143
             L +  ++ +L  +    N    L +         T++       N+           +
Sbjct: 77  TTL-DLSQNTNLTYLACDSNKLTNLDVTPL------TKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 144 AGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 203
             L+ + N LT     ++     +  L+   N     +    +    + +LD S NK+  
Sbjct: 130 TYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT- 183

Query: 204 QIPQLTELHSLSKFDVSYNNLS 225
           ++  +++   L++ +   NN++
Sbjct: 184 ELD-VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 41/260 (15%), Positives = 81/260 (31%), Gaps = 39/260 (15%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L  L+   N  + ++   +N++  L  L    N L   I   +  L +L+  D S N 
Sbjct: 191 KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDT--RTLD 119
           L     S ++ L        DL  + +   +  L          +       +T    LD
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

Query: 120 ------TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS 173
                 T++ ++   K          L Y   L L++ ELT ++   +     +  L+  
Sbjct: 304 CQAAGITELDLSQNPK----------LVY---LYLNNTELT-ELD--VSHNTKLKSLSCV 347

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKL------NGQIPQLTELHSLSKFDVSYNNLSCP 227
           +  +          +  + +   +  +             LT   S    D   N ++  
Sbjct: 348 NAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

Query: 228 IPDKEQFSTFDESSYRGNLN 247
             D   +     +    NL+
Sbjct: 406 PGDGGVYDQATNTITWENLS 425

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L   SN+LT   + ++  L  +  LN   N L+  +    S   ++  L+ + N L  +I
Sbjct: 90  LACDSNKLT---NLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EI 142

Query: 206 PQLTELHSLSKFDVSYNNLSCPIP 229
             ++    L++ D   N     + 
Sbjct: 143 D-VSHNTQLTELDCHLNKKITKLD 165

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 40/244 (16%), Positives = 87/244 (35%), Gaps = 30/244 (12%)

Query: 2   SALEILDLRDNYF-SGRIPYGINEH-SNLRALLLKGNYLQGPIPHQL-CQLRKLSIMDLS 58
           + LE+L L         +     +  ++L  L+L+ N ++   P      +R+  ++DL+
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 59  HNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVP----------- 107
            N++       I               L  R     L+D+  Y+                
Sbjct: 163 FNKV-----KSICEEDLLNFQGKHFTLL--RLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 108 -LSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG--DISSEIGDL 164
            L L  +  +    +   + +   + +S   +   Y  G            + + +  + 
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLI-LSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 165 RNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSY 221
             +   +LS + +  ++ +  FS+   +E L L+ N++N +I       L  L K ++S 
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ 332

Query: 222 NNLS 225
           N L 
Sbjct: 333 NFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 56/248 (22%), Positives = 91/248 (36%), Gaps = 32/248 (12%)

Query: 2   SALEILDLRDNYFSGRIPYGI---NEHSNLRALLLKGNYLQGPIPHQLCQ--------LR 50
               +LDL  N     I        +  +   L L    LQ    + L            
Sbjct: 154 RRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 51  KLSIMDLSHNRLNGSIPSCITNLLFW-KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLS 109
            ++ +DLS N    S+     + +   K+ +  L      G  F   +  +  N T    
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK-G 271

Query: 110 LDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAG---LDLSSNELTGDISSEIGD-LR 165
           L+ S  +T D       ++K++  +    +  +      L L+ NE+   I       L 
Sbjct: 272 LEASGVKTCD-------LSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLT 323

Query: 166 NIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYN 222
           ++  LNLS NFL  SI    F NL  +E LDLS+N +   +       L +L +  +  N
Sbjct: 324 HLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTN 381

Query: 223 NLSCPIPD 230
            L   +PD
Sbjct: 382 QLKS-VPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 146 LDLSSNELTGDISSEIGD-LRNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNG 203
           L +        I +     L ++  L L +N     +    F+ L  +E L L+   L+G
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDG 117

Query: 204 -QIPQ--LTELHSLSKFDVSYNNLSCPIPD 230
             +       L SL    +  NN+    P 
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 22/233 (9%)

Query: 4   LEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
             +LDL++N  S  +     +   +L AL+L  N +          LRKL  + +S N L
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 63  N---GSIPSCITNLLFW-----KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSD 114
                ++PS +  L        KV  G   GL        +  I    N       +   
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN------MNCIEMGGNPLENSGFEPGA 168

Query: 115 TRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLS 173
              L    +   +++ +       + E +  L L  N++   I  E       ++ L L 
Sbjct: 169 FDGLKLNYL--RISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 174 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLS 225
           HN +      S S L  +  L L +NKL+ ++P  L +L  L    +  NN++
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 54/236 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQ-GPIPHQLCQLRKLSIMDLSH 59
           S+L  L + DN    ++P G+ +   N+  + + GN L+            KL+ + +S 
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 60  NRLNG---SIPSCITNL-----LFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLD 111
            +L G    +P  +  L         +   DL    +      L            L L 
Sbjct: 182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK------LYR----------LGLG 225

Query: 112 RSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLN 171
            +  R ++   +                L  +  L L +N+L+  + + + DL+ +  + 
Sbjct: 226 HNQIRMIENGSLSF--------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 172 LSHNFLSGSIPESFSNLKM------IESLDLSHNKL-NGQIPQ-----LTELHSLS 215
           L  N ++      F  +           + L +N +   ++       +T+  ++ 
Sbjct: 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 36/228 (15%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L ++   D      +P  I+   +   L L+ N +          L+ L  + L +N+++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQ 121
                        K+       L +      L+ +Y   N    +P +L  S    L   
Sbjct: 92  -------------KIHEKAFSPLRK------LQKLYISKNHLVEIPPNLPSS-LVELRIH 131

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGD-ISSEIGDLRNIHGLNLSHNFLSGS 180
              N + K     + G  L  M  +++  N L          D   ++ L +S   L+G 
Sbjct: 132 D--NRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187

Query: 181 IPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
             +    L     L L HNK+   I    L     L +  + +N +  
Sbjct: 188 PKDLPETL---NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM 231

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 61/208 (29%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L  L + +   +  IP  +     L  L L  N +Q      L +  KL  + L HN++ 
Sbjct: 174 LNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI- 229

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQ 121
                 I N     +                L +++   N  S VP  L   D + L   
Sbjct: 230 ----RMIENGSLSFLPT--------------LRELHLDNNKLSRVPAGL--PDLKLLQV- 268

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-------GDLRNIHGLNLSH 174
                                   + L +N +T  +                 +G++L +
Sbjct: 269 ------------------------VYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 175 NFLSGSI--PESFSNLKMIESLDLSHNK 200
           N +      P +F  +    ++   + K
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 53/230 (23%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
           ++L  L+L DN+ +  IP G  E+ S LR L L+ N ++    +   ++  L  +DL   
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTL 118
           +    I              G   GL       +L+ +         +P   + +    L
Sbjct: 182 KKLEYISE------------GAFEGLF------NLKYLNLGMCNIKDMP---NLTPLVGL 220

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
           +                          L++S N            L ++  L + ++ +S
Sbjct: 221 EE-------------------------LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
                +F  L  +  L+L+HN L+  +P    T L  L +  + +N  +C
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 55/243 (22%)

Query: 1   DSALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
            S    L+L +N     I      H  +L  L L  N ++         L  L+ ++L  
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVP---------- 107
           N L   IPS            G    L +      L +++   N   ++P          
Sbjct: 133 NWLT-VIPS------------GAFEYLSK------LRELWLRNNPIESIPSYAFNRVPSL 173

Query: 108 LSLDRSDT---RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL 164
           + LD  +      +        +            L+Y   L+L    +       +  L
Sbjct: 174 MRLDLGELKKLEYISEGAFEG-LFN----------LKY---LNLGMCNIKDM--PNLTPL 217

Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYN 222
             +  L +S N      P SF  L  ++ L + +++++  I +     L SL + ++++N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276

Query: 223 NLS 225
           NLS
Sbjct: 277 NLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 146 LDLSSNELT---GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 202
           +  +   L+     I S      N   LNL  N +     ++F +L  +E L L  N + 
Sbjct: 59  VVCTRRGLSEVPQGIPS------NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 203 GQIPQ--LTELHSLSKFDVSYNNLS 225
            QI       L SL+  ++  N L+
Sbjct: 113 -QIEVGAFNGLASLNTLELFDNWLT 136

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 53/230 (23%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
           + L  L+L DN  +  IP G   + S L+ L L+ N ++    +   ++  L  +DL   
Sbjct: 112 ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTL 118
           +    I              G   GL        L  +         +P +L        
Sbjct: 171 KRLSYIS------------EGAFEGLSN------LRYLNLAMCNLREIP-NLTP------ 205

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
                                L  +  LDLS N L+         L ++  L +  + + 
Sbjct: 206 ---------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
                +F NL+ +  ++L+HN L   +P    T LH L +  + +N  +C
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 53/242 (21%)

Query: 1   DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
            +   +L+L +N              +L  L L  N+++         L  L+ ++L  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVP----------L 108
           RL  +IP+            G    L +      L++++   N   ++P           
Sbjct: 123 RLT-TIPN------------GAFVYLSK------LKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 109 SLDRSDT---RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLR 165
            LD  +      +                     L  +  L+L+   L       +  L 
Sbjct: 164 RLDLGELKRLSYISEGAFEG--------------LSNLRYLNLAMCNLREI--PNLTPLI 207

Query: 166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNN 223
            +  L+LS N LS   P SF  L  ++ L +  +++   I +     L SL + ++++NN
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266

Query: 224 LS 225
           L+
Sbjct: 267 LT 268

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 55/228 (24%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             LE L L  N     +P  +     L+ L +  N +          L ++ +++L  N 
Sbjct: 100 VKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           L     S I N  F  +                L  I       +T+P  L  S      
Sbjct: 157 LK---SSGIENGAFQGMKK--------------LSYIRIADTNITTIPQGLPPS------ 193

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLS 178
                               L     L L  N++T  + +     L N+  L LS N +S
Sbjct: 194 --------------------LTE---LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS 229

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLS 225
                S +N   +  L L++NKL  ++P  L +   +    +  NN+S
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 54/242 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQ-GPIPHQLCQ-LRKLSIMDLS 58
             L+ L + +N  + ++   + N  + +  + L  N L+   I +   Q ++KLS + ++
Sbjct: 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 59  HNRLNG---SIPSCITNL-----LFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSL 110
              +      +P  +T L        KV    L GL        L            L L
Sbjct: 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN------LAK----------LGL 223

Query: 111 DRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGL 170
             +    +D   + N                ++  L L++N+L   +   + D + I  +
Sbjct: 224 SFNSISAVDNGSLAN--------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 171 NLSHNFLSGSIPES-------FSNLKMIESLDLSHNKLN-GQIPQLT--ELHSLSKFDVS 220
            L +N +S +I  +        +       + L  N +   +I   T   ++  +   + 
Sbjct: 269 YLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 221 YN 222
             
Sbjct: 328 NY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDL +N++T     +  +L+N+H L L +N +S   P +F+ L  +E L LS N+L  ++
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115

Query: 206 PQLTELHSLSKFDVSYNNLS 225
           P+     +L +  V  N ++
Sbjct: 116 PEKM-PKTLQELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 39/230 (16%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L ++   D     ++P  +    +   L L+ N +          L+ L  + L +N+++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLDTQ 121
                        K+  G    LV+      LE +Y   N    +P  + ++  + L   
Sbjct: 90  -------------KISPGAFAPLVK------LERLYLSKNQLKELPEKMPKT-LQELRVH 129

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELT-GDISSEI-GDLRNIHGLNLSHNFLSG 179
              N +TK R   + G  L  M  ++L +N L    I +     ++ +  + ++   ++ 
Sbjct: 130 E--NEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184

Query: 180 SIPES-FSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
           +IP+    +L     L L  NK+  ++    L  L++L+K  +S+N++S 
Sbjct: 185 TIPQGLPPSL---TELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 59/209 (28%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             L  + + D   +  IP G+    +L  L L GN +       L  L  L+ + LS N 
Sbjct: 171 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRTLD 119
           +     S + N       +              L +++   N    VP  L         
Sbjct: 228 I-----SAVDNGSLANTPH--------------LRELHLNNNKLVKVPGGLA-------- 260

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG------DISSEIGDLRNIHGLNLS 173
                                +Y+  + L +N ++                 +  G++L 
Sbjct: 261 -------------------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 174 HNFLSGSI--PESFSNLKMIESLDLSHNK 200
            N +      P +F  + +  ++ L + K
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L++S N ++   +S+I  L  +  L +SHN +       F   + +E LDLSHNKL   I
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I 84

Query: 206 PQLTELHSLSKFDVSYNNLSCPIPDKEQFS 235
                  +L   D+S+N     +P  ++F 
Sbjct: 85  S-CHPTVNLKHLDLSFNAFDA-LPICKEFG 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 49/201 (24%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQ--GPIPHQLCQLRKLSIMDLSH 59
           S    LD  +N  +  +       + L  L+L+ N L+    I     Q++ L  +D+S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
           N ++                +              L  +    N      L  +  R L 
Sbjct: 384 NSVSYDEKKGD----CSWTKS--------------LLSLNMSSNI-----LTDTIFRCLP 420

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
            ++ V                     LDL SN++   I  ++  L  +  LN++ N L  
Sbjct: 421 PRIKV---------------------LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK- 457

Query: 180 SIPE-SFSNLKMIESLDLSHN 199
           S+P+  F  L  ++ + L  N
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPES--FSNLKMIESLDLSHNKL-N 202
           LDLS N+L            N+  L+LS N    ++P    F N+  ++ L LS   L  
Sbjct: 74  LDLSHNKLV---KISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 203 GQIPQLTELHSLSKFDVSYNNLSCPIP 229
             +  +  L+      V          
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKED 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 146 LDLSSNELTGDISSEIGD-LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204
           LD+S N ++ D         +++  LN+S N L+ +I         I+ LDL  NK+   
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSI 436

Query: 205 IPQLTELHSLSKFDVSYNNLS 225
             Q+ +L +L + +V+ N L 
Sbjct: 437 PKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 17/236 (7%)

Query: 6   ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLS---IMDLSHNRL 62
           +L+     +   I   +  +  L  L L           ++ QL   +      +S+ +L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 63  NGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQV 122
            G +     +     +    ++ +V     F    IY  +++    +   S TR +    
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 123 --------VVNFMTKNRYESYKGVI--LEYMAGLDLSSNELT--GDISSEIGDLRNIHGL 170
                    ++F      ++       L  +  L L  N+L     I+     ++++  L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 171 NLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           ++S N +S        S  K + SL++S N L            +   D+  N + 
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 41/245 (16%), Positives = 79/245 (32%), Gaps = 18/245 (7%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
               IL++  NY S      I   S LR L++  N +Q          ++L  +DLSHN+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFD----LEDIYNYYN---STVPLSLDRSD 114
           L         NL    +       L      F     L+ +         +  L +   +
Sbjct: 81  LVKISCHPTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 115 TRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH 174
              +   +   +  K   E  +    E +  +  ++ E    +   +  + N+   N+  
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 175 NFLSGSIPESFSNL------KMIESLDLSHNKLNG----QIPQLTELHSLSKFDVSYNNL 224
                      S L        + +L L++ +       +I QL    ++  F +S   L
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 225 SCPIP 229
              + 
Sbjct: 260 QGQLD 264

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 29/235 (12%), Positives = 75/235 (31%), Gaps = 9/235 (3%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
                  L   + + +  + I + S      L+ + ++  +    C      +  L  N 
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
              ++        +       +  LV     +            +          +L   
Sbjct: 221 KLSNLTLNNIETTW--NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 122 VVVNFMTKNRYESYKGV--ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
            +   ++         +  I   M   + + +            +     L+ S+N L+ 
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLT----ELHSLSKFDVSYNNLSCPIPD 230
           ++ E+  +L  +E+L L  N+L  ++ ++     ++ SL + D+S N++S     
Sbjct: 339 TVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 45/231 (19%), Positives = 70/231 (30%), Gaps = 53/231 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLSH 59
             L IL L  N  + RI        + L  L L  N     +       L +L  + L  
Sbjct: 56  RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDR-SDTRTL 118
             L   +              G   GL        L+ +Y   N+   L  D   D   L
Sbjct: 115 CGLQ-ELGP------------GLFRGLAA------LQYLYLQDNALQALPDDTFRDLGNL 155

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFL 177
                                      L L  N ++  +       L ++  L L  N +
Sbjct: 156 TH-------------------------LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
           +   P +F +L  + +L L  N L+  +P   L  L +L    ++ N   C
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 52/225 (23%), Positives = 78/225 (34%), Gaps = 51/225 (22%)

Query: 17  RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFW 76
            +P GI   +  + + L GN +           R L+I+ L  N L   I +        
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDA-------- 73

Query: 77  KVGNGDLYGLVERGRDFDLEDIYNYYNSTVP------------LSLDRSDTRTLDTQVVV 124
                   GL       DL D  N    +V             L LDR   + L   +  
Sbjct: 74  ----AAFTGLA-LLEQLDLSD--NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 125 NFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPE 183
             +            L+Y   L L  N L   +  +   DL N+  L L  N +S S+PE
Sbjct: 127 G-LAA----------LQY---LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170

Query: 184 -SFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLS 225
            +F  L  ++ L L  N++   +      +L  L    +  NNLS
Sbjct: 171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
                  L   +   I        + L  N +S     SF   + +  L L  N L  +I
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARI 71

Query: 206 PQ--LTELHSLSKFDVSYNNLSCPIPD 230
                T L  L + D+S N     +  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDP 98

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 8e-08
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 146 LDLSSNELTGDISSE-IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204
           L + + +    +    +  L  +  L +  + L    P++F     +  L+LS N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95

Query: 205 IPQLTELHSLSKFDVSYNNLSCP 227
             +  +  SL +  +S N L C 
Sbjct: 96  SWKTVQGLSLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 161 IGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPQLT--ELHSLSKF 217
           +    N+  L + +      +       L  + +L +  + L   +          LS+ 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRL 85

Query: 218 DVSYNNLS 225
           ++S+N L 
Sbjct: 86  NLSFNALE 93

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 146 LDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKL-- 201
           LDLSSN L   +   +  DL+ +  L L +N +   +   +F ++  ++ L LS N++  
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 202 --NGQIPQLTELHSLSKFDVSYNNLS 225
                I    +L  L   D+S N L 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 146 LDLSSNELTGDISSEI--GDLRNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLN 202
           LDLS N L+  + +E     L N+H L LSHN L+  I   +F  +  +  LDLS N L+
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 203 GQIPQ--LTELHSLSKFDVSYNNLS 225
             + +   ++L +L    +  N++ 
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV 125

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L L  N ++ DI+  +  L  +  L L +N ++       S L  +++L L  N+++  I
Sbjct: 114 LSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 168

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L  L    +S N++S
Sbjct: 169 VPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
            +L    +T D  +   +L +I  +  +++ +  S+ +    L  +  L L+ NKL   I
Sbjct: 26  DNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI 80

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             LT L +L    +  N + 
Sbjct: 81  KPLTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 42/266 (15%), Positives = 95/266 (35%), Gaps = 46/266 (17%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQ--GPIPHQLCQLRKLSIMDLSHNR 61
               +L+    +  +    NE +++  ++   + ++    I +    L  ++ + L+ N+
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY----LPNVTKLFLNGNK 76

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN---STVPLSLDRSDTRTL 118
           L     + I  L   K                +L  ++   N       L  D    ++L
Sbjct: 77  L-----TDIKPLTNLK----------------NLGWLFLDENKIKDLSSLK-DLKKLKSL 114

Query: 119 DTQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                   +  N      G++ L  +  L L +N++T DI+  +  L  +  L+L  N +
Sbjct: 115 S-------LEHNGISDINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI 165

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237
           S  I    + L  +++L LS N ++  +  L  L +L   ++          + +     
Sbjct: 166 S-DI-VPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 238 DESSYRGNLNLCCPPINKSCTNLPEL 263
             +    + +L  P I     +  + 
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKP 248

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 46/280 (16%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRAL-LLKGNYLQGPIPHQLCQLRKLSIMDLSH 59
             LE +++  N     I   + +    L  + + K N L    P     L  L  + +S+
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVP---LSLDRSDTR 116
             +   +P         K+ +              L+   N    T+          ++ 
Sbjct: 114 TGIK-HLPD------VHKIHSLQK---------VLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 117 TLDTQVVVNFMTKNRYES-----YKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGL 170
            L        + KN  +      + G  L+ +      +N L  ++ +++         L
Sbjct: 158 ILW-------LNKNGIQEIHNSAFNGTQLDEL--NLSDNNNLE-ELPNDVFHGASGPVIL 207

Query: 171 NLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYN-NLSCPI 228
           ++S   +  S+P     NLK + +    + K   ++P L +L +L +  ++Y  +     
Sbjct: 208 DISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEASLTYPSHCCAFA 263

Query: 229 PDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSS 268
             + Q S   E     N ++    ++       +    + 
Sbjct: 264 NWRRQIS---ELHPICNKSILRQEVDYMTQARGQRSSLAE 300

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 204
                +++T +I S++   RN   L      L   I + +FS    +E +++S N +   
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 205 IPQ--LTELHSLSKFDVSYNN 223
           I     + L  L +  +   N
Sbjct: 70  IEADVFSNLPKLHEIRIEKAN 90

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L+L  N++T D++  + +L  I  L LS N L      + + L+ I++LDL+  ++   +
Sbjct: 68  LELKDNQIT-DLA-PLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT-DV 122

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L +L    +  N ++
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 43/254 (16%), Positives = 94/254 (37%), Gaps = 37/254 (14%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           +  L       +  I  G+   +NL  L LK N +    P  L  L K++ ++LS N L 
Sbjct: 43  ITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98

Query: 64  G-SIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQV 122
             S  + + ++    + +  +          D+  +    N  V L LD +    +    
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQIT---------DVTPLAGLSNLQV-LYLDLNQITNIS--- 145

Query: 123 VVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP 182
            +  +T           L+Y   L + + +++ D++  + +L  +  L    N +S  I 
Sbjct: 146 PLAGLTN----------LQY---LSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DIS 189

Query: 183 ESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSY 242
              ++L  +  + L +N+++  +  L    +L    ++   ++   P     +    +  
Sbjct: 190 -PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVV 246

Query: 243 RGNLNLCCPPINKS 256
           +G       P   S
Sbjct: 247 KGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 54/199 (27%)

Query: 27  NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGL 86
           N   +    + +   +      L  ++ +      +                        
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT----------------------- 54

Query: 87  VERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGL 146
                   +E +    N      L+  D +  D   + N +TK                L
Sbjct: 55  -------TIEGVQYLNNLI---GLELKDNQITDLAPLKN-LTKITE-------------L 90

Query: 147 DLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206
           +LS N L  ++S+ I  L++I  L+L+   ++   P   + L  ++ L L  N++   I 
Sbjct: 91  ELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NIS 145

Query: 207 QLTELHSLSKFDVSYNNLS 225
            L  L +L    +    +S
Sbjct: 146 PLAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNN 223
           L N   +    + ++     + ++L  I +L      +   I  +  L++L   ++  N 
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74

Query: 224 LS 225
           ++
Sbjct: 75  IT 76

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 49/252 (19%), Positives = 90/252 (35%), Gaps = 39/252 (15%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQ-LRKLSIMDLSH 59
             L+ L L  N  +  I         +L  L L  NYL   +     + L  L+ ++L  
Sbjct: 76  VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLG 133

Query: 60  NRLN----GSIPSCITNLLFWKVGNGDLYGLVERGRDFD----LEDIYNYYN---STVPL 108
           N        S+ S +T L   +VGN D +  ++R  DF     LE++    +   S  P 
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPK 192

Query: 109 SLDR-SDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEI--- 161
           SL    +   L        +   ++     + ++  + +   +L   +L     SE+   
Sbjct: 193 SLKSIQNVSHLI-------LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 162 -----GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSL 214
                        + ++   L   + +  + +  +  L+ S N+L   +P      L SL
Sbjct: 246 ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSL 303

Query: 215 SKFDVSYNNLSC 226
            K  +  N   C
Sbjct: 304 QKIWLHTNPWDC 315

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 48/228 (21%)

Query: 2   SALEILDLRDNYFSGRIPYGINEH-SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
            A++ LDL +N  +  I     +   NL+AL+L  N +          L  L  +DLS+N
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 61  RLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
            L     S +++  F  + +     L                     L+L  +  +TL  
Sbjct: 111 YL-----SNLSSSWFKPLSS-----LTF-------------------LNLLGNPYKTLGE 141

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSG 179
             + + +TK             +  L + + +    I  +    L  +  L +  + L  
Sbjct: 142 TSLFSHLTK-------------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 180 SIPESFSNLKMIESLDLSHNKLNGQIPQLT--ELHSLSKFDVSYNNLS 225
             P+S  +++ +  L L   +    + ++      S+   ++   +L 
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 146 LDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLN- 202
           L L+SN +   I  +    L ++  L+LS+N+LS ++  S F  L  +  L+L  N    
Sbjct: 81  LVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 203 -GQIPQLTELHSLSKFDVSYNNLSCPIPD 230
            G+    + L  L    V   +    I  
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQR 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNGQ 204
           L LS N ++     +I  L  +  L LSHN +  S+    F   + +E LD+SHN+L   
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN- 114

Query: 205 IPQLTELHSLSKFDVSYNNLSCPIPDKEQFS 235
           I     + SL   D+S+N+    +P  ++F 
Sbjct: 115 IS-CCPMASLRHLDLSFNDFDV-LPVCKEFG 143

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 39/241 (16%), Positives = 81/241 (33%), Gaps = 28/241 (11%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
            +L I  +++  F        +  + +   +L  +                + ++ + N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN--STVPLSLDRSDTRT-L 118
              S+    + L                     L+ +    N           +   + L
Sbjct: 365 FTDSVFQGCSTLK-------------------RLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 119 DTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS 178
           +T  V      +          E +  L+LSSN LTG +   +     +  L+L +N + 
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM 463

Query: 179 GSIPESFSNLKMIESLDLSHNKLNGQIPQ--LTELHSLSKFDVSYNNLSCPIPDKEQFST 236
            SIP+  ++L+ ++ L+++ N+L   +P      L SL    +  N   C  P     S 
Sbjct: 464 -SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 521

Query: 237 F 237
           +
Sbjct: 522 W 522

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 24/242 (9%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 66
           LDL   +          +  N   L L  +            +  L  + LS+ +LN   
Sbjct: 176 LDLVSYHIK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 67  PSCITNLLFWKVGNGDLYGLVERGRDFDLEDI------------------YNYYNSTVPL 108
              +   L        L  +  +  +   +                           +  
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 109 SLDRSDTRTLDTQVVVNFMTKNRYESYKGV--ILEYMAGLDLSSNELTGDISSEIGDLRN 166
                    L + ++ +   +    S + +  +   M    LS ++             +
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 167 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL---NGQIPQLTELHSLSKFDVSYNN 223
              LN + N  + S+ +  S LK +++L L  N L            + SL   DVS N+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 224 LS 225
           L+
Sbjct: 415 LN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPES--FSNLKMIESLDLSHNKLNG 203
           LD+S N L    +     + ++  L+LS N     +P    F NL  +  L LS  K   
Sbjct: 105 LDVSHNRLQ---NISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF-- 158

Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPD 230
           +   L  +  L    +  + +S  I  
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKG 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L L  N ++ DI+  +  L  +  L L +N ++       S L  +++L L  N+++  I
Sbjct: 117 LSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 171

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L  L    +S N++S
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
            +L    +T D  +   +L +I  +  +++ +  S+ +    L  +  L L+ NKL   I
Sbjct: 29  DNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI 83

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L +L    +  N + 
Sbjct: 84  KPLANLKNLGWLFLDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L L+ N+LT DI   + +L+N+  L L  N +   +  S  +LK ++SL L HN ++  I
Sbjct: 73  LFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DI 127

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L  L    +  N ++
Sbjct: 128 NGLVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 37/228 (16%), Positives = 83/228 (36%), Gaps = 46/228 (20%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
               +L+    +  +    NE +++  ++   + ++      +  L  ++ + L+ N+  
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-- 79

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN---STVPLSLDRSDTRTLDT 120
                 +T++         L  L        L  ++   N       L  D    ++L  
Sbjct: 80  ------LTDI-------KPLANLKN------LGWLFLDENKVKDLSSLK-DLKKLKSLS- 118

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
                 +  N      G  L ++  L    L +N++T DI+  +  L  +  L+L  N +
Sbjct: 119 ------LEHNGISDING--LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI 168

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
           S  I    + L  +++L LS N ++  +  L  L +L   ++      
Sbjct: 169 S-DI-VPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECL 213

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 203
           L L  N +   I +       +  L +S+N ++ S+      L  +  L +S+NK+   G
Sbjct: 75  LSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWG 131

Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCP 251
           +I +L  L  L    ++ N    P+ +  + +    S YR  +    P
Sbjct: 132 EIDKLAALDKLEDLLLAGN----PLYNDYKENN-ATSEYRIEVVKRLP 174

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L ++ N L  +++        +  L L +N L     +S  +LK +E L + +NKL   I
Sbjct: 90  LSVNRNRLK-NLNG--IPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SI 143

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             L  L  L   D+  N ++
Sbjct: 144 VMLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
            +  ++ +   ++  +    N+  L+LSHN +S  +     +L  +E L ++ N+L   +
Sbjct: 46  FNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NL 100

Query: 206 PQLTELHSLSKFDVSYNNLS 225
             +     LS+  +  N L 
Sbjct: 101 NGIPSA-CLSRLFLDNNELR 119

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 203
           L   +  LT  I++ +  L  +  L LS N +SG +         +  L+LS NK+    
Sbjct: 47  LSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 204 QIPQLTELHSLSKFDVSYN 222
            I  L +L +L   D+   
Sbjct: 105 TIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L L +  L   +S+ +  L  +  L LS N + G +      L  +  L+LS NK    +
Sbjct: 54  LSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK----L 107

Query: 206 PQLTELHSLSKF 217
             ++ L  L K 
Sbjct: 108 KDISTLEPLKKL 119

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           L+L   ELT       G L  +  L+LSHN L  S+P     L  +  LD+S N+L   +
Sbjct: 60  LNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115

Query: 206 P-----QLTELHSLSKFDVSYNNLSCPIPD 230
           P      L EL  L    +  N L   +P 
Sbjct: 116 PLGALRGLGELQELY---LKGNELKT-LPP 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           ++     LT  +  ++   ++   L+LS N L      +      +  L+L   +L  ++
Sbjct: 15  VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KL 70

Query: 206 PQLTELHSLSKFDVSYNNLS 225
                L  L   D+S+N L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQ 90

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 146 LDLSSNELTGDISSEIGD-LRNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNG 203
           LD+S N LT  +       L  +  L L  N L  ++P    +    +E L L++N L  
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT- 161

Query: 204 QIPQ--LTELHSLSKFDVSYNNLS 225
           ++P   L  L +L    +  N+L 
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY 185

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 146 LDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNG 203
           + +S +     + S    +L  +  + + +      I  ++   L +++ L + +  L  
Sbjct: 60  IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK- 118

Query: 204 QIPQLTELHSLSK---FDVSYNNLSCPIPD 230
             P LT+++S       +++ N     IP 
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 29/222 (13%), Positives = 65/222 (29%), Gaps = 49/222 (22%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQ-LRKLSIMDLSH 59
             +  + +  +    ++        S +  + ++       I     + L  L  + + +
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 60  NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLD 119
             L    P              DL  +      F LE   N Y +++P++  +       
Sbjct: 115 TGLK-MFP--------------DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG 179
           T                         L L +N  T  +     +   +  + L+ N    
Sbjct: 160 T-------------------------LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 180 SIPE-SFSNLK-MIESLDLSHNKL----NGQIPQLTELHSLS 215
            I + +F  +      LD+S   +    +  +  L EL + +
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 146 LDLSSNELTG-DISSEIGDLRNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 203
           L L++NE T  + +     L  +  +N S+N ++  I E +F     +  + L+ N+L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 204 QIPQ--LTELHSLSKFDVSYNNLSCPIPDKEQFSTFD 238
            +       L SL    +  N ++C + +     +F 
Sbjct: 96  -VQHKMFKGLESLKTLMLRSNRITC-VGN----DSFI 126

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 42/211 (19%), Positives = 67/211 (31%), Gaps = 41/211 (19%)

Query: 2   SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQ---GPIPHQLCQLRKLSIMDL 57
             L++LDL        I  G     S+L  L+L GN +Q         L  L+KL     
Sbjct: 52  PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL---VA 107

Query: 58  SHNRLNGSIPSCI----TNLLFWKVGNGDLYGLVERGRDFD----LEDIYNYYNSTVPLS 109
               L  S+ +        L    V +  +         F     LE           L 
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEH----------LD 155

Query: 110 LDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHG 169
           L  +  +++    +   + +    +           LDLS N +   I         +  
Sbjct: 156 LSSNKIQSIYCTDLRV-LHQMPLLNLS---------LDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 170 LNLSHNFLSGSIPE-SFSNLKMIESLDLSHN 199
           L L  N L  S+P+  F  L  ++ + L  N
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           +D S NE+   +      LR +  L +++N +          L  +  L L++N     +
Sbjct: 47  IDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS----L 100

Query: 206 PQLTELHSLSKF 217
            +L +L  L+  
Sbjct: 101 VELGDLDPLASL 112

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 204
           + L  N +           + +  ++LS+N +S  +   +F  L+ + SL L  NK+  +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 205 IPQ--LTELHSLSKFDVSYNNLSCPIPDKEQFSTFD 238
           +P+     L SL    ++ N ++C +        F 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINC-LRV----DAFQ 125

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 5e-04
 Identities = 12/104 (11%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 146 LDLSSNELTGDISSEIGD---LRNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSH 198
           L +   E    +     +   L  +  +++S   L+      + +    +K ++ +++ +
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316

Query: 199 NKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSY 242
           N L+ ++    EL       +  ++      D   +    E  +
Sbjct: 317 NYLSDEM--KKELQKSLPMKIDVSDSQEY-DDDYSYPMITELEH 357

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.33
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	89.24
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	87.83
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	80.04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=3.2e-28  Score=240.51  Aligned_cols=119  Identities=44%  Similarity=0.679  Sum_probs=113.4

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD  218 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~  218 (333)
                      +.+|+.|||++|++++..|..++++++|+.|+|++|++++.+|..++.+++|+.|||++|++++..| .+..++.|+.|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            5779999999999999999999999999999999999999999999999999999999999999998 999999999999


Q ss_pred             cccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCC
Q 039997          219 VSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTN  259 (333)
Q Consensus       219 l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~  259 (333)
                      +++|+++|.+|....+..+...++.||+.+|+.|.. .|..
T Consensus       711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~  750 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP  750 (768)
T ss_dssp             CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred             CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence            999999999999999999999999999999999876 8864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=2.7e-28  Score=243.29  Aligned_cols=126  Identities=27%  Similarity=0.348  Sum_probs=88.8

Q ss_pred             hccccEEECCCCccc-----ccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCC
Q 039997          140 LEYMAGLDLSSNELT-----GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHS  213 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~  213 (333)
                      +++|+.|++++|.++     +..+..|.++++|+.|+|++|++++.++..|..+++|+.|+|++|+++++++ .+.  ++
T Consensus       450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~  527 (844)
T 3j0a_A          450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN  527 (844)
T ss_dssp             CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred             CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence            455666666666665     3334567778888888888888888777778888888888888888887776 443  67


Q ss_pred             CCEEEcccCcCcccCCCCccccccCccccCCCCCCC-------------------CCCCCCCCCCCCCcCCCCCC
Q 039997          214 LSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLC-------------------CPPINKSCTNLPELLETSSK  269 (333)
Q Consensus       214 L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c-------------------~~~~~~~c~~~~~~~~~~~~  269 (333)
                      |+.|++++|.+++..|.  .+..+..+++.+|++.|                   +.+....|..|+...+....
T Consensus       528 L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~  600 (844)
T 3j0a_A          528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF  600 (844)
T ss_dssp             CCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTT
T ss_pred             ccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccc
Confidence            77777777777766554  34566666777777777                   44566789988777665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=3.8e-28  Score=215.22  Aligned_cols=229  Identities=30%  Similarity=0.463  Sum_probs=183.0

Q ss_pred             CcccEEECCC-CcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---ccccc
Q 039997            2 SALEILDLRD-NYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---LLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L~~L~   77 (333)
                      ++|++|+|++ |.+++.+|..|.++++|++|++++|++++..|..|..+++|++|++++|.+++.+|..+..   |+.|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            5799999995 9999899999999999999999999999899999999999999999999999888887755   55666


Q ss_pred             ccCCccccc-cccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-cchhhh-hccccEEECCCCccc
Q 039997           78 VGNGDLYGL-VERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-SYKGVI-LEYMAGLDLSSNELT  154 (333)
Q Consensus        78 ~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-l~~L~~L~Ls~n~l~  154 (333)
                      +.+|.+.+. +.......        ...                 ....+..+.+. ..+... ...|+.|++++|.++
T Consensus       156 L~~N~l~~~~p~~l~~l~--------~~L-----------------~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~  210 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFS--------KLF-----------------TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSCCEEECCGGGGCCC--------TTC-----------------CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             CcCCcccCcCCHHHhhhh--------hcC-----------------cEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence            777776632 11111000        001                 11111111111 111100 123999999999999


Q ss_pred             ccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997          155 GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ  233 (333)
Q Consensus       155 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~  233 (333)
                      +..|..|..+++|+.|++++|.+++..+. +..+++|+.|++++|.+++..| .+..+++|+.|++++|++++..|....
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  289 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence            99999999999999999999999976665 8889999999999999998777 899999999999999999999998888


Q ss_pred             ccccCccccCCCCCCCCCCCCCCC
Q 039997          234 FSTFDESSYRGNLNLCCPPINKSC  257 (333)
Q Consensus       234 ~~~l~~~~~~~n~~~c~~~~~~~c  257 (333)
                      +..++.+++.+|+..|+.|.. .|
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccChHHhcCCCCccCCCCC-CC
Confidence            889999999999999987754 46

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.3e-27  Score=218.83  Aligned_cols=230  Identities=15%  Similarity=0.079  Sum_probs=171.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      +++++|+|++|.|++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+++...+..|   .+|+.|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            579999999999998889999999999999999999999999999999999999999999996555544   56778888


Q ss_pred             cCCccccccccCCCCcccccccccCCCC-CcCCCCCCCCccccceEEEEeeccccccchhh-hhccccEEECCCCccccc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTV-PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV-ILEYMAGLDLSSNELTGD  156 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~  156 (333)
                      ++|.+..+.................... ...+....+..+. .+....+..+.+..++.. .+++|+.|+|++|.+++.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence            8888776543211111111011111100 0011111111111 122233334444333322 167899999999999999


Q ss_pred             CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997          157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE  232 (333)
Q Consensus       157 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~  232 (333)
                      .|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+++++++ .+..+++|+.|++++|++.|.|...+
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~  310 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW  310 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence            99999999999999999999998888899999999999999999998888 78889999999999999999996543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=8.4e-27  Score=200.03  Aligned_cols=211  Identities=22%  Similarity=0.249  Sum_probs=159.1

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~   79 (333)
                      +.+++|++++.++ .+|..+.  +++++|+|++|+++++.+..|.++++|++|++++|.+++..+..|   .+|+.|++.
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4678888888888 5666655  578888888888888888888888888888888888886666554   445566666


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      +|.+..+.....                                            .  .+++|++|+|++|++++..+.
T Consensus        92 ~n~l~~~~~~~~--------------------------------------------~--~l~~L~~L~L~~N~l~~~~~~  125 (251)
T 3m19_A           92 NNQLASLPLGVF--------------------------------------------D--HLTQLDKLYLGGNQLKSLPSG  125 (251)
T ss_dssp             TSCCCCCCTTTT--------------------------------------------T--TCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcccccChhHh--------------------------------------------c--ccCCCCEEEcCCCcCCCcChh
Confidence            666554221100                                            0  057899999999999988888


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccc-c
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFST-F  237 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-l  237 (333)
                      .|..+++|+.|+|++|++++..+..|+.+++|+.|++++|+++++.+ .+..+++|+.|++++|+++|.+.....+.. +
T Consensus       126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~  205 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI  205 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred             HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence            89999999999999999998888889999999999999999999888 899999999999999999998544433322 2


Q ss_pred             Cc-----cccCCCCCCCCCCCCCCCCCCCCc
Q 039997          238 DE-----SSYRGNLNLCCPPINKSCTNLPEL  263 (333)
Q Consensus       238 ~~-----~~~~~n~~~c~~~~~~~c~~~~~~  263 (333)
                      ..     ....++ ..|+.|....|..+...
T Consensus       206 ~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~  235 (251)
T 3m19_A          206 RENSNKVKDGTGQ-NLHESPDGVTCSDGKVV  235 (251)
T ss_dssp             HHSGGGBCC--------CCGGGCBBTTSCBG
T ss_pred             HhcccceeeccCc-ccccCCCcCccCCCcEE
Confidence            11     111233 35777888889865433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=7e-27  Score=216.67  Aligned_cols=230  Identities=17%  Similarity=0.123  Sum_probs=172.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++++.|+|++|.|++..+..|.++++|++|+|++|+|+.+.++.|.++++|++|+|++|+++...+..|   .+|+.|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            578999999999998888999999999999999999999999999999999999999999996555444   56677888


Q ss_pred             cCCccccccccCCCCcccccccccCCCC-CcCCCCCCCCccccceEEEEeeccccccchhhh-hccccEEECCCCccccc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTV-PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGD  156 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~  156 (333)
                      .+|.+..+.................... ...+....+..+. .+....+..+.+..++... +.+|+.|+|++|++++.
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence            8888776543211111111001111100 0011111111111 1222333444444433221 67899999999999999


Q ss_pred             CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997          157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE  232 (333)
Q Consensus       157 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~  232 (333)
                      .+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+++.+++ .+..+++|+.|++++|+|.|+|...+
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~  299 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW  299 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence            99999999999999999999998888899999999999999999998888 78899999999999999999996543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.5e-27  Score=206.18  Aligned_cols=227  Identities=19%  Similarity=0.175  Sum_probs=168.4

Q ss_pred             CCcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCc-CCCCCChhh---hccccc
Q 039997            1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR-LNGSIPSCI---TNLLFW   76 (333)
Q Consensus         1 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~-l~~~~p~~l---~~L~~L   76 (333)
                      +++|++|++++|.|++..+..|.++++|++|++++|+++++.|..|.++++|++|++++|+ ++...|..+   .+|+.|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            3578999999999998777889999999999999999998889999999999999999997 775556655   456677


Q ss_pred             cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcc
Q 039997           77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNEL  153 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l  153 (333)
                      ++.+|.+..+.......        .....                 ...+..+.+...+..   .+++|+.|++++|++
T Consensus       111 ~l~~n~l~~~~~~~~~~--------l~~L~-----------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRG--------LAALQ-----------------YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             ECTTSCCCCCCTTTTTT--------CTTCC-----------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhC--------CcCCC-----------------EEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            77777766542211000        00111                 111111222221111   157889999999999


Q ss_pred             cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997          154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE  232 (333)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~  232 (333)
                      ++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+ .+..+++|+.|++++|++.|.|+..+
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~  245 (285)
T 1ozn_A          166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP  245 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence            98887888899999999999999988878888899999999999999998777 68888999999999999999887665


Q ss_pred             cccccCccccCCCCCCCCCC
Q 039997          233 QFSTFDESSYRGNLNLCCPP  252 (333)
Q Consensus       233 ~~~~l~~~~~~~n~~~c~~~  252 (333)
                      ...+++......+...|..|
T Consensus       246 ~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          246 LWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             HHHHHHHCCSEECCCBEEES
T ss_pred             HHHHHHhcccccCccccCCc
Confidence            55566555555555444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=9.1e-26  Score=195.70  Aligned_cols=184  Identities=23%  Similarity=0.271  Sum_probs=130.3

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~   79 (333)
                      ++++|+|++|.|++..+..|.++++|++|++++|+++.+.+..|.++++|++|++++|+++...+..|   .+|+.|++.
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            45666666666665545556666666666666666665555555666666666666666654333333   234444444


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      +|.+..+...                                            .+.  .+++|++|++++|.+++..+.
T Consensus       118 ~n~l~~~~~~--------------------------------------------~~~--~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A          118 RNQLKSLPPR--------------------------------------------VFD--SLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             SSCCCCCCTT--------------------------------------------TTT--TCTTCCEEECCSSCCCCCCTT
T ss_pred             CCccCeeCHH--------------------------------------------HhC--cCcCCCEEECCCCcCCccCHh
Confidence            4444332110                                            000  157899999999999988888


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE  232 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~  232 (333)
                      .|..+++|+.|++++|++++..+..|..+++|+.|++++|.++++++ .+..+++|+.|++++|++.|.|+...
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  225 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII  225 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSH
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHH
Confidence            89999999999999999998888889999999999999999998887 78889999999999999999997553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1.2e-25  Score=200.66  Aligned_cols=246  Identities=18%  Similarity=0.136  Sum_probs=181.6

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|++++|.|++..|..|.++++|++|++++|+++++.|..|.++++|++|++++|+++...+..+.+|+.|++.+|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n  133 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN  133 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            57899999999999877889999999999999999999888999999999999999999998444444578899999999


Q ss_pred             ccccccccC--CCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           82 DLYGLVERG--RDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      .+..+....  ....+.......+...........+...  ......+..+.+..++....++|+.|++++|.+++..+.
T Consensus       134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~  211 (332)
T 2ft3_A          134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE  211 (332)
T ss_dssp             CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTT
T ss_pred             ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHH
Confidence            887654321  1111111111111111000111111111  112222334444445544457899999999999988889


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCc-------
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKE-------  232 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-------  232 (333)
                      .|.++++|+.|++++|++++..+..+..+++|+.|++++|.++.++..+..+++|+.|++++|+++...+...       
T Consensus       212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred             HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence            9999999999999999999888888999999999999999999766688999999999999999986654321       


Q ss_pred             cccccCccccCCCCCCC
Q 039997          233 QFSTFDESSYRGNLNLC  249 (333)
Q Consensus       233 ~~~~l~~~~~~~n~~~c  249 (333)
                      ....+..+++.+|+..+
T Consensus       292 ~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             SSCCBSEEECCSSSSCG
T ss_pred             ccccccceEeecCcccc
Confidence            13445677788888763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=3.9e-25  Score=197.24  Aligned_cols=247  Identities=18%  Similarity=0.147  Sum_probs=178.5

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      +++++|+|++|.|++..+..|.++++|++|++++|+++++.|..|.++++|++|++++|+++......+.+|+.|++.+|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n  131 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  131 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence            57899999999999877778999999999999999999888999999999999999999998443344578889999998


Q ss_pred             ccccccccC--CCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           82 DLYGLVERG--RDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      .+..+....  ....+.......+...........+..+ ..+....+..+.+..++....++|+.|++++|++++..+.
T Consensus       132 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~  210 (330)
T 1xku_A          132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA  210 (330)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred             cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence            887654311  1111111111111111000111111111 1222333444555555544457899999999999988889


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCc-------
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKE-------  232 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-------  232 (333)
                      .|..+++|+.|++++|.+++..+..+..+++|+.|++++|.++.++..+..+++|+.|++++|+++...+...       
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~  290 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  290 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence            9999999999999999999877778999999999999999999766688889999999999999986543321       


Q ss_pred             cccccCccccCCCCCCC
Q 039997          233 QFSTFDESSYRGNLNLC  249 (333)
Q Consensus       233 ~~~~l~~~~~~~n~~~c  249 (333)
                      ....+..+++.+|+..+
T Consensus       291 ~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          291 KKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TSCCCSEEECCSSSSCG
T ss_pred             ccccccceEeecCcccc
Confidence            12445566777787654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=3.7e-25  Score=193.78  Aligned_cols=199  Identities=18%  Similarity=0.121  Sum_probs=137.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~   80 (333)
                      ++++++++++|.++ .+|..+.  +++++|+|++|+++++.+..|.++++|++|++++|.++...+ ..+.+|+.|++++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH   86 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCS
T ss_pred             CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCC
Confidence            56788999999988 5666554  688899999999988888888999999999999998874332 3456777888888


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh---hhhccccEEECCCCcccccC
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG---VILEYMAGLDLSSNELTGDI  157 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~  157 (333)
                      |.+..++.....         ....                 ....+..+.+..++.   ..+++|+.|++++|++++..
T Consensus        87 N~l~~l~~~~~~---------l~~L-----------------~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  140 (290)
T 1p9a_G           87 NQLQSLPLLGQT---------LPAL-----------------TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (290)
T ss_dssp             SCCSSCCCCTTT---------CTTC-----------------CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CcCCcCchhhcc---------CCCC-----------------CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence            877654321110         0000                 111111111111110   01567788888888887777


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCC
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP  229 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~  229 (333)
                      +..|..+++|+.|+|++|+++++++..|..+++|+.|++++|+++.+++.+...+.|+.+++++|++.|.|.
T Consensus       141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence            777777788888888888888777777777788888888888887666666666778888888888887773

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=210.70  Aligned_cols=252  Identities=17%  Similarity=0.112  Sum_probs=172.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++|++|+|++|.++...+..|.++++|++|+|++|+++++.+..|..+++|++|++++|.++...+..|   .+|+.|++
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence            578888888888886666678888888888888888888888888888888888888888876555544   44556666


Q ss_pred             cCCccccccccC--CCCcccccccccCCC--------------CCcCCCCCCCC-------ccccceEEEEeeccccccc
Q 039997           79 GNGDLYGLVERG--RDFDLEDIYNYYNST--------------VPLSLDRSDTR-------TLDTQVVVNFMTKNRYESY  135 (333)
Q Consensus        79 ~~n~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  135 (333)
                      .+|.+..+....  ....+.......+..              ..+.++.....       .....+....+..+.+..+
T Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred             CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence            777665543210  000111110000000              00001000000       0000222233344444444


Q ss_pred             hhh---hhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC
Q 039997          136 KGV---ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL  211 (333)
Q Consensus       136 ~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l  211 (333)
                      +..   .+++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|.++++.+ .+..+
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence            422   16789999999999998888999999999999999999998888999999999999999999998888 78889


Q ss_pred             CCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997          212 HSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI  253 (333)
Q Consensus       212 ~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  253 (333)
                      ++|+.|++++|++.|.|+..+.+.+.....+.++...|..|.
T Consensus       320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          320 GNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             GGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             cccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence            999999999999999997655444444455666666675443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.93  E-value=1.5e-25  Score=188.29  Aligned_cols=157  Identities=23%  Similarity=0.319  Sum_probs=142.9

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLY   84 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~   84 (333)
                      +.++++++.++ .+|..+.  +++++|++++|+|+++.+..|.++++|+.|+|++|++++..|..|..            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            57899999999 5777665  78999999999999898889999999999999999999776766655            


Q ss_pred             cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCc
Q 039997           85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL  164 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  164 (333)
                                                                             +++|++|+|++|+++.+.+..|.++
T Consensus        79 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l  103 (220)
T 2v9t_B           79 -------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGL  103 (220)
T ss_dssp             -------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             -------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCC
Confidence                                                                   3668899999999998888889999


Q ss_pred             cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC
Q 039997          165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK  231 (333)
Q Consensus       165 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~  231 (333)
                      ++|+.|+|++|++++..+..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|++.|.|...
T Consensus       104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            999999999999999999999999999999999999999888 7999999999999999999998644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=9.9e-25  Score=202.90  Aligned_cols=113  Identities=25%  Similarity=0.309  Sum_probs=90.9

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD  218 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~  218 (333)
                      +++|+.|++++|++++..+..|.++++|+.|+|++|.+++..+..|+.+++|+.|++++|++++..+ .+..+++|+.|+
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            5678888888888888878888888888888888888887777888888888888888888888777 788888888888


Q ss_pred             cccCcCcccCCCC-ccccccCccccCCCCCCCCCC
Q 039997          219 VSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCCPP  252 (333)
Q Consensus       219 l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~~~  252 (333)
                      +++|.++...+.. ..+..++.+++.+|+..|+.|
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            8888888655443 456677788888888888655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.6e-25  Score=191.82  Aligned_cols=207  Identities=22%  Similarity=0.198  Sum_probs=142.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~   78 (333)
                      ++|++|++++|.|++..+..|.++++|++|++++|+++++.+..|.++++|++|++++|++++..+..+.   +|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            5799999999999987777999999999999999999988888999999999999999999876666554   5556667


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chhh--hhccccEEECCCCccc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKGV--ILEYMAGLDLSSNELT  154 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~~L~~L~Ls~n~l~  154 (333)
                      .+|.+..+......        .......+.                 +..+.+..  ++..  .+++|++|++++|+++
T Consensus       108 ~~n~l~~~~~~~~~--------~l~~L~~L~-----------------l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          108 VETNLASLENFPIG--------HLKTLKELN-----------------VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTSCCCCSTTCCCT--------TCTTCCEEE-----------------CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCccccCchhcc--------cCCCCCEEE-----------------CcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            77766654321100        000011111                 11111111  0100  1466777777777777


Q ss_pred             ccCCccccCccccc----eeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCC
Q 039997          155 GDISSEIGDLRNIH----GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP  229 (333)
Q Consensus       155 ~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~  229 (333)
                      +..+..|..+++|+    .|++++|.+++..+..+.. .+|+.|++++|.++++++ .+..+++|+.|++++|+++|.|+
T Consensus       163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            76666676666666    6777777777555554433 367788888888777766 56777788888888888888777


Q ss_pred             CCccc
Q 039997          230 DKEQF  234 (333)
Q Consensus       230 ~~~~~  234 (333)
                      ...++
T Consensus       242 ~l~~l  246 (276)
T 2z62_A          242 RIDYL  246 (276)
T ss_dssp             TTHHH
T ss_pred             chHHH
Confidence            65443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=2.9e-25  Score=195.94  Aligned_cols=226  Identities=20%  Similarity=0.187  Sum_probs=144.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccc--cchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGP--IPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFW   76 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L   76 (333)
                      ++|++|+|++|.++...+..|.++++|++|++++|+++.+  .+..+.++++|++|++++|.++ .+|..   +.+|+.|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            5799999999999965556689999999999999999844  3677888999999999999987 44543   4566677


Q ss_pred             cccCCccccccccCCCCc---ccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chhh--hhccccEEECC
Q 039997           77 KVGNGDLYGLVERGRDFD---LEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKGV--ILEYMAGLDLS  149 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~~L~~L~Ls  149 (333)
                      ++.+|.+..+........   +.......+...  ......+.... ......+..+.+..  .+..  .+++|+.|+++
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE--ECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCC--ccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            778887766543111111   111111111100  00000111111 11222222222221  1111  15677777777


Q ss_pred             CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC-CCCEEEcccCcCccc
Q 039997          150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH-SLSKFDVSYNNLSCP  227 (333)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~-~L~~L~l~~N~l~~~  227 (333)
                      +|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+ .+..++ +|+.|++++|+++|.
T Consensus       184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            777777777777777777777777777776666667777777777777777777666 666664 777777777777777


Q ss_pred             CCCC
Q 039997          228 IPDK  231 (333)
Q Consensus       228 ~~~~  231 (333)
                      |+..
T Consensus       264 c~~~  267 (306)
T 2z66_A          264 CEHQ  267 (306)
T ss_dssp             GGGH
T ss_pred             cChH
Confidence            7544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=3.5e-25  Score=220.88  Aligned_cols=254  Identities=21%  Similarity=0.201  Sum_probs=169.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++|++|+|++|.|++..|..|.++++|++|+|++|+++++.|..|.++++|+.|++++|++....+..|   .+|+.|++
T Consensus       290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  369 (844)
T 3j0a_A          290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL  369 (844)
T ss_dssp             CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred             CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence            578888888888888888888888888888888888888888888888888888888888876555444   45567777


Q ss_pred             cCCccccccccCCCCcccccccc--------------------------------cCCCCCcCCCCCCCCc--------c
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNY--------------------------------YNSTVPLSLDRSDTRT--------L  118 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~--------~  118 (333)
                      ++|.+..+........+......                                ......+.++.+.+..        .
T Consensus       370 s~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  449 (844)
T 3j0a_A          370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE  449 (844)
T ss_dssp             ETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred             CCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence            77776654321111100000000                                0000001111111100        0


Q ss_pred             ccceEEEEeeccccc----------cchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCC
Q 039997          119 DTQVVVNFMTKNRYE----------SYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNL  188 (333)
Q Consensus       119 ~~~~~~~~~~~~~~~----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  188 (333)
                      ...+....+..+.+.          .+.+  +++|+.|+|++|++++..+..|.++++|+.|+|++|++++.++..+.  
T Consensus       450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--  525 (844)
T 3j0a_A          450 NPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--  525 (844)
T ss_dssp             CTTCCBCEEESCCCSSSCCSCCCSSCSSC--BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred             CCccccccCCCCccccccccccchhhhcC--cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence            001111112222221          1222  68899999999999999999999999999999999999988877665  


Q ss_pred             CCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCcc--ccCC--CCCCCCCCCCCCCCCCC
Q 039997          189 KMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDES--SYRG--NLNLCCPPINKSCTNLP  261 (333)
Q Consensus       189 ~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~--~~~~--n~~~c~~~~~~~c~~~~  261 (333)
                      ++|+.|++++|++++..+..  +.+|+.+++++|++.|.|+..+...++...  .+.+  ....|..|.........
T Consensus       526 ~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~  600 (844)
T 3j0a_A          526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF  600 (844)
T ss_dssp             SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTT
T ss_pred             ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccc
Confidence            88999999999999988822  358999999999999999866544443221  1222  34679888776665433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.7e-24  Score=182.90  Aligned_cols=200  Identities=21%  Similarity=0.228  Sum_probs=167.8

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~   79 (333)
                      +.++++++++.++ .+|..+.  +++++|++++|+++.+.+..|.++++|++|++++|+++...+..|   .+|+.|++.
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4678999999999 5777665  689999999999998888899999999999999999985555444   556677777


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      +|.+..+....                                            +.+  +++|++|++++|.+++..+.
T Consensus        94 ~n~l~~~~~~~--------------------------------------------~~~--l~~L~~L~l~~n~l~~~~~~  127 (270)
T 2o6q_A           94 DNKLQALPIGV--------------------------------------------FDQ--LVNLAELRLDRNQLKSLPPR  127 (270)
T ss_dssp             SSCCCCCCTTT--------------------------------------------TTT--CSSCCEEECCSSCCCCCCTT
T ss_pred             CCcCCcCCHhH--------------------------------------------ccc--ccCCCEEECCCCccCeeCHH
Confidence            77665532110                                            000  57899999999999999999


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-cccccc
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTF  237 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l  237 (333)
                      .|..+++|+.|++++|.+++..+..|+.+++|+.|++++|.++++.+ .+..+++|+.|++++|.++...+.. ..+..+
T Consensus       128 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence            99999999999999999998888889999999999999999999888 7899999999999999998765542 456778


Q ss_pred             CccccCCCCCCCCC
Q 039997          238 DESSYRGNLNLCCP  251 (333)
Q Consensus       238 ~~~~~~~n~~~c~~  251 (333)
                      +.+.+.+|++.|+.
T Consensus       208 ~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          208 KMLQLQENPWDCTC  221 (270)
T ss_dssp             CEEECCSSCBCCSS
T ss_pred             CEEEecCCCeeCCC
Confidence            88899999998854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.92  E-value=4.8e-25  Score=185.27  Aligned_cols=163  Identities=20%  Similarity=0.218  Sum_probs=142.5

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccc-hhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL   83 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~   83 (333)
                      +++++++|.++ .+|..+.  ..+++|+|++|+|+++.+ +.|..+++|+.|++++|++++..+..|..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            58999999999 5777665  467899999999998754 56899999999999999999665555544           


Q ss_pred             ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997           84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD  163 (333)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  163 (333)
                                                                              +++|++|+|++|.+++..+..|.+
T Consensus        80 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~  103 (220)
T 2v70_A           80 --------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKG  103 (220)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTT
T ss_pred             --------------------------------------------------------CCCCCEEECCCCccCccCHhHhcC
Confidence                                                                    466889999999999999899999


Q ss_pred             ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997          164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTF  237 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l  237 (333)
                      +++|+.|+|++|++++..|..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|+++|.|+..+...++
T Consensus       104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~  178 (220)
T 2v70_A          104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWL  178 (220)
T ss_dssp             CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHH
T ss_pred             CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHH
Confidence            9999999999999999889999999999999999999999988 8999999999999999999999755433333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=4.3e-24  Score=185.31  Aligned_cols=182  Identities=24%  Similarity=0.268  Sum_probs=153.5

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++|+.|++++|.++. . ..+..+++|++|++++|+++++  ..+..+++|++|++++|.+++..+..+   .+|+.|++
T Consensus        41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            578999999999983 3 3588899999999999999864  478999999999999999997666554   45666777


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      .+|.+..+.....                                            .  .+++|++|++++|++++..+
T Consensus       117 ~~n~l~~~~~~~~--------------------------------------------~--~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A          117 VENQLQSLPDGVF--------------------------------------------D--KLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             TTSCCCCCCTTTT--------------------------------------------T--TCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCCccCHHHh--------------------------------------------c--cCCCCCEEECCCCccCccCH
Confidence            7776655321100                                            0  05789999999999998888


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ  233 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~  233 (333)
                      ..|..+++|+.|++++|++++..+..++.+++|+.|++++|.+++..+ .+..+++|+.|++++|++.|.||....
T Consensus       151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~  226 (272)
T 3rfs_A          151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  226 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHH
Confidence            889999999999999999998888889999999999999999999888 789999999999999999999986643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.2e-24  Score=209.56  Aligned_cols=238  Identities=21%  Similarity=0.197  Sum_probs=160.5

Q ss_pred             CcccEEECCCCcCCCC--CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhh---hcccc
Q 039997            2 SALEILDLRDNYFSGR--IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCI---TNLLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l---~~L~~   75 (333)
                      ++|++|++++|.+++.  .|..+.++++|++|++++|.+++ .|..|..+++|+.|++++|++.+..| ..+   .+|+.
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            5788888888888755  37778888888888888888874 44678888888888888888876655 333   45556


Q ss_pred             ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chh--hhhccccEEECCCC
Q 039997           76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKG--VILEYMAGLDLSSN  151 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~l~~L~~L~Ls~n  151 (333)
                      |++++|.+.+.......        .......+                 .+..+.+..  .+.  ..+++|+.|++++|
T Consensus       429 L~l~~n~l~~~~~~~~~--------~l~~L~~L-----------------~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFL--------GLTSLNTL-----------------KMAGNSFKDNTLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             EECTTSCCEECCTTTTT--------TCTTCCEE-----------------ECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EECcCCCCCccchhhhc--------CCCCCCEE-----------------ECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence            66677766552211000        00001111                 111111111  111  01688999999999


Q ss_pred             cccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCC-CCCEEEcccCcCcccCCC
Q 039997          152 ELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELH-SLSKFDVSYNNLSCPIPD  230 (333)
Q Consensus       152 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~  230 (333)
                      ++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|+++.+++.+..++ +|+.+++++|++.|.|+.
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999998889999999999999999999997666788886 599999999999999987


Q ss_pred             CccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 039997          231 KEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKG  270 (333)
Q Consensus       231 ~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~~~  270 (333)
                      .+...+++.     +......+....|..|+...+....+
T Consensus       564 ~~~~~~l~~-----~~~~~~~~~~~~C~~p~~~~~~~l~~  598 (606)
T 3vq2_A          564 QKFLQWVKE-----QKQFLVNVEQMTCATPVEMNTSLVLD  598 (606)
T ss_dssp             HHHHTTTTT-----SSSSBSSGGGCCCC------------
T ss_pred             HHHHHHHHc-----CcccccCCccceeCCChHhCCCEeee
Confidence            654445432     22222235567888777666654433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=203.08  Aligned_cols=249  Identities=22%  Similarity=0.178  Sum_probs=179.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++|++|+|++|.|++..|..|.++++|++|+|++|+++.+.+..|.++++|++|++++|++....|..|   .+|+.|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            689999999999998889999999999999999999998888889999999999999999987766655   45667778


Q ss_pred             cCCccccccccCCC--CcccccccccCCCC--------------CcCCCCCCCC--------ccccceEEEEeecccccc
Q 039997           79 GNGDLYGLVERGRD--FDLEDIYNYYNSTV--------------PLSLDRSDTR--------TLDTQVVVNFMTKNRYES  134 (333)
Q Consensus        79 ~~n~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  134 (333)
                      .+|.+..+......  ..+.......+...              .+.+......        ..................
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence            88887665432111  11111111111111              1111111110        111111111111111111


Q ss_pred             chhhh--hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC
Q 039997          135 YKGVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL  211 (333)
Q Consensus       135 ~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l  211 (333)
                      ++...  ..+|+.|++++|++++..+..|.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+ .+..+
T Consensus       216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence            11111  2378999999999997766789999999999999999998888889999999999999999999888 89999


Q ss_pred             CCCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCC
Q 039997          212 HSLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       212 ~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~  250 (333)
                      ++|+.|++++|.++...+.. ..+..++.+++.+|++.|+
T Consensus       296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            99999999999998765433 3556788889999999985

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.6e-23  Score=179.49  Aligned_cols=176  Identities=19%  Similarity=0.232  Sum_probs=145.2

Q ss_pred             cccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccccCCccccccccCCCCccccccccc
Q 039997           26 SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYY  102 (333)
Q Consensus        26 ~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~  102 (333)
                      .+.++++++++.++.+ |..+.  ++++.|++++|.+++..+..|   .+|+.|++++|.+.++.....           
T Consensus        14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------   79 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-----------   79 (251)
T ss_dssp             GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----------
T ss_pred             CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-----------
Confidence            4678899999999944 44443  689999999999997777665   455667777776665321100           


Q ss_pred             CCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCch
Q 039997          103 NSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP  182 (333)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  182 (333)
                                                       .  .+++|++|++++|++++..+..|..+++|+.|+|++|++++..+
T Consensus        80 ---------------------------------~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  124 (251)
T 3m19_A           80 ---------------------------------D--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS  124 (251)
T ss_dssp             ---------------------------------T--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ---------------------------------c--cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence                                             0  05789999999999998888999999999999999999998888


Q ss_pred             HHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCC
Q 039997          183 ESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       183 ~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~  250 (333)
                      ..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|.++...+.. ..+..++.+.+.+|++.|.
T Consensus       125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            889999999999999999999888 8999999999999999999776533 4567788889999999885

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=5.1e-24  Score=186.49  Aligned_cols=173  Identities=23%  Similarity=0.180  Sum_probs=131.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L~~   78 (333)
                      +++++|+|++|.|++..+..|.++++|++|+|++|+|+++.+.  ..+++|++|++++|+++ .+|..   +.+|+.|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            5789999999999988888999999999999999999966553  78999999999999998 55654   456778888


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTG  155 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~  155 (333)
                      .+|.+..+.......        ....                 ....+..+.+..++..   .+++|+.|+|++|++++
T Consensus       108 ~~N~l~~l~~~~~~~--------l~~L-----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          108 SFNRLTSLPLGALRG--------LGEL-----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CSSCCCCCCSSTTTT--------CTTC-----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCcCcccCHHHHcC--------CCCC-----------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            888887654211110        0011                 1111222222222211   16789999999999998


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccC
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG  203 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  203 (333)
                      +.+..|..+++|+.|+|++|+++. +|..+..+++|+.+++++|.+..
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence            888889999999999999999995 45566677899999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.2e-24  Score=192.66  Aligned_cols=220  Identities=22%  Similarity=0.345  Sum_probs=171.1

Q ss_pred             CcccEEECCCCcCCC--CCCccccCCcccceeeccc-cccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---ccc
Q 039997            2 SALEILDLRDNYFSG--RIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---LLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L~~   75 (333)
                      .+++.|+|++|.+++  .+|..|.++++|++|++++ |.+.+..|..|..+++|++|++++|++++.+|..+..   |+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            578999999999998  8999999999999999995 9999899999999999999999999999888887755   556


Q ss_pred             ccccCCccccccc-cCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-cchhhh--hc-cccEEECCC
Q 039997           76 WKVGNGDLYGLVE-RGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-SYKGVI--LE-YMAGLDLSS  150 (333)
Q Consensus        76 L~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--l~-~L~~L~Ls~  150 (333)
                      |++++|.+.+... ...         .......+.                 +..+.+. ..+...  +. .|+.|++++
T Consensus       130 L~Ls~N~l~~~~p~~~~---------~l~~L~~L~-----------------L~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS---------SLPNLVGIT-----------------FDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             EECCSSEEESCCCGGGG---------GCTTCCEEE-----------------CCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             EeCCCCccCCcCChHHh---------cCCCCCeEE-----------------CcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            6667777664211 100         011111111                 1122211 111111  33 799999999


Q ss_pred             CcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCC
Q 039997          151 NELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD  230 (333)
Q Consensus       151 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  230 (333)
                      |++++..|..+..++ |+.|++++|.+++..|..|..+++|+.|++++|.+++..+.+..+++|+.|++++|.+++..|.
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh
Confidence            999989999999887 9999999999998889999999999999999999998777778889999999999999877665


Q ss_pred             C-ccccccCccccCCCCCC
Q 039997          231 K-EQFSTFDESSYRGNLNL  248 (333)
Q Consensus       231 ~-~~~~~l~~~~~~~n~~~  248 (333)
                      . ..+..++.+++.+|...
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEE
T ss_pred             HHhcCcCCCEEECcCCccc
Confidence            3 45667777888887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=9.9e-24  Score=192.43  Aligned_cols=85  Identities=19%  Similarity=0.231  Sum_probs=58.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L~~   78 (333)
                      ++|++|+|++|.|++..+..|.++++|++|++++|+++++.|..|.++++|++|++++|+++...+..   +.+|+.|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            46777777777777666667777777777777777777777777777777777777777777433322   345556666


Q ss_pred             cCCccccc
Q 039997           79 GNGDLYGL   86 (333)
Q Consensus        79 ~~n~~~~~   86 (333)
                      .+|.+..+
T Consensus       149 ~~n~l~~~  156 (390)
T 3o6n_A          149 SNNNLERI  156 (390)
T ss_dssp             CSSCCCBC
T ss_pred             CCCccCcc
Confidence            66666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=1.3e-23  Score=207.47  Aligned_cols=245  Identities=28%  Similarity=0.363  Sum_probs=160.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~   78 (333)
                      ++|++|++++|.+++.+|..+.++++|++|++++|++++..|..|..+++|+.|++++|++++.+|..+.   +|+.|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            3566777777777766777777777777777777777777777777777777777777777766666554   3445556


Q ss_pred             cCCcccccccc-CC-CCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-cchhhh--hccccEEECCCCcc
Q 039997           79 GNGDLYGLVER-GR-DFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-SYKGVI--LEYMAGLDLSSNEL  153 (333)
Q Consensus        79 ~~n~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--l~~L~~L~Ls~n~l  153 (333)
                      .+|.+.+.... .. ...+.......+....  .....+..+ ..+....+..+.+. ..+...  +++|+.|++++|.+
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCC--cCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            66666542211 00 0001111111110000  000001111 11222233333332 222211  67788888888887


Q ss_pred             cccCCc----------------------------------------------------------------------cccC
Q 039997          154 TGDISS----------------------------------------------------------------------EIGD  163 (333)
Q Consensus       154 ~~~~~~----------------------------------------------------------------------~~~~  163 (333)
                      ++..|.                                                                      .+..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            765553                                                                      3445


Q ss_pred             ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCccc
Q 039997          164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDESS  241 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~  241 (333)
                      +++|+.|||++|++++.+|..++.+++|+.|+|++|.+++..| .++.+++|+.||+++|.+++.+|.. ..+..++.++
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            6789999999999999999999999999999999999999888 9999999999999999999988865 4666777888


Q ss_pred             cCCCCCCC
Q 039997          242 YRGNLNLC  249 (333)
Q Consensus       242 ~~~n~~~c  249 (333)
                      +..|...-
T Consensus       711 ls~N~l~g  718 (768)
T 3rgz_A          711 LSNNNLSG  718 (768)
T ss_dssp             CCSSEEEE
T ss_pred             CcCCcccc
Confidence            88876543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.6e-24  Score=186.99  Aligned_cols=178  Identities=21%  Similarity=0.183  Sum_probs=134.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++|++|++++|.+++..+..|.++++|++|++++|+++++.+..|.++++|++|++++|++.+..+..+   .+|+.|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            579999999999998888899999999999999999998988999999999999999999986555444   56667777


Q ss_pred             cCCcccccc--ccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhcccc----EEECC
Q 039997           79 GNGDLYGLV--ERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMA----GLDLS  149 (333)
Q Consensus        79 ~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~----~L~Ls  149 (333)
                      .+|.+..+.  ....         .......+.                 +..+.+......   .+..|+    .|+++
T Consensus       132 ~~n~l~~~~l~~~~~---------~l~~L~~L~-----------------Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          132 AHNLIQSFKLPEYFS---------NLTNLEHLD-----------------LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             CSSCCCCCCCCGGGG---------GCTTCCEEE-----------------CCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             cCCccceecCchhhc---------cCCCCCEEE-----------------CCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            787776521  1110         011111112                 222222221111   134455    89999


Q ss_pred             CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997          150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  206 (333)
Q Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  206 (333)
                      +|.+++..+..+.. .+|+.|++++|++++.++..|+.+++|+.|++++|.+++..+
T Consensus       186 ~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          186 LNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99999887777765 489999999999998888889999999999999999986443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=3.7e-24  Score=199.03  Aligned_cols=234  Identities=20%  Similarity=0.247  Sum_probs=167.6

Q ss_pred             CcccEEECCCCcCCCCCCcc--ccCCcccceeeccccccccccchh-hcCCCCCCEEeCCCCcCCCCCChhhh-------
Q 039997            2 SALEILDLRDNYFSGRIPYG--INEHSNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSHNRLNGSIPSCIT-------   71 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~-f~~L~~L~~LdLs~N~l~~~~p~~l~-------   71 (333)
                      ++|++|+|++|.+++..+..  |.++++|++|++++|+++++.|.. |..+++|++|++++|++++..|..+.       
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence            57999999999998755444  889999999999999999887766 88999999999999999876665443       


Q ss_pred             ------------------------------ccccccccCCccccccccCC-----CCccccc------------------
Q 039997           72 ------------------------------NLLFWKVGNGDLYGLVERGR-----DFDLEDI------------------   98 (333)
Q Consensus        72 ------------------------------~L~~L~~~~n~~~~~~~~~~-----~~~~~~~------------------   98 (333)
                                                    +|+.|++++|.+.+......     .......                  
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence                                          35566666665543110000     0000000                  


Q ss_pred             --------ccccCCCCCcCCCCCCCCc-------cccceEEEEeeccccccchhh---hhccccEEECCCCcccccCCcc
Q 039997           99 --------YNYYNSTVPLSLDRSDTRT-------LDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTGDISSE  160 (333)
Q Consensus        99 --------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~  160 (333)
                              .........+.++.+.+..       ....+....+..+.+......   .+++|+.|++++|.+++..+..
T Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence                    0000111122222222111       011233334444444433221   1688999999999999998999


Q ss_pred             ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcccc
Q 039997          161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFS  235 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  235 (333)
                      |.++++|+.|+|++|++++..|..|..+++|+.|++++|+++++++ .+..+++|+.|++++|+++|.||...++.
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~  418 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS  418 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred             hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHH
Confidence            9999999999999999998889999999999999999999999888 78999999999999999999999776553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=7.6e-24  Score=193.20  Aligned_cols=245  Identities=18%  Similarity=0.125  Sum_probs=148.3

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++|++|+|++|.+++..|..|.++++|++|++++|+++.+.+..|..+++|++|++++|++++..|..+   .+|+.|++
T Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  172 (390)
T 3o6n_A           93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  172 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence            579999999999998888889999999999999999997777778999999999999999987666555   45667777


Q ss_pred             cCCccccccccCCCCcccccccccCC---------CCCcCCCCCCCCcc----ccceEEEEeeccccccchhh-hhcccc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNS---------TVPLSLDRSDTRTL----DTQVVVNFMTKNRYESYKGV-ILEYMA  144 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~~L~  144 (333)
                      .+|.+..+.... ...+.......+.         ...+.++...+...    ........+..+.+...+.. .+++|+
T Consensus       173 ~~n~l~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~  251 (390)
T 3o6n_A          173 SSNRLTHVDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV  251 (390)
T ss_dssp             CSSCCSBCCGGG-CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             CCCcCCcccccc-ccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCcc
Confidence            888776642110 0000000000000         00011111111000    00111222222222222111 145666


Q ss_pred             EEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcC
Q 039997          145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL  224 (333)
Q Consensus       145 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l  224 (333)
                      .|++++|.+++..|..|..+++|+.|++++|++++ .+..+..+++|+.|++++|.++.+++.+..+++|+.|++++|++
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence            77777777666666666666777777777776664 33444556667777777776665544555566667777777666


Q ss_pred             cccCCCCccccccCccccCCCCCCCC
Q 039997          225 SCPIPDKEQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       225 ~~~~~~~~~~~~l~~~~~~~n~~~c~  250 (333)
                      +...  ...+..++.+++.+|++.|+
T Consensus       331 ~~~~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          331 VTLK--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             ceeC--chhhccCCEEEcCCCCccch
Confidence            5432  33455666666777776663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=4.6e-24  Score=190.07  Aligned_cols=205  Identities=19%  Similarity=0.258  Sum_probs=126.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---cccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L~~   78 (333)
                      ++++.|+|++|.++ .+|..+..+++|++|+|++|.++ ..|..|..+++|++|++++|+++ .+|..+.+++   .|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            57899999999999 78888999999999999999999 77888999999999999999999 7787776554   5555


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      .+|...+...   ......           .+.                     ..+.+  +++|+.|++++|+++ ..|
T Consensus       158 ~~n~~~~~~p---~~~~~~-----------~~~---------------------~~~~~--l~~L~~L~L~~n~l~-~lp  199 (328)
T 4fcg_A          158 RACPELTELP---EPLAST-----------DAS---------------------GEHQG--LVNLQSLRLEWTGIR-SLP  199 (328)
T ss_dssp             EEETTCCCCC---SCSEEE-----------C-C---------------------CCEEE--STTCCEEEEEEECCC-CCC
T ss_pred             CCCCCccccC---hhHhhc-----------cch---------------------hhhcc--CCCCCEEECcCCCcC-cch
Confidence            5554433111   000000           000                     00000  345555555555555 444


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccc
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFST  236 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~  236 (333)
                      ..+.++++|+.|++++|++++. |..+..+++|+.|++++|.+.+..| .+..+++|+.|++++|.+.+..|.. ..+..
T Consensus       200 ~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~  278 (328)
T 4fcg_A          200 ASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ  278 (328)
T ss_dssp             GGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred             HhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence            4555555555555555555533 2345555555555555555555544 5555555555555555555444432 23444


Q ss_pred             cCccccCCCCCC
Q 039997          237 FDESSYRGNLNL  248 (333)
Q Consensus       237 l~~~~~~~n~~~  248 (333)
                      ++.+++.+|...
T Consensus       279 L~~L~L~~n~~~  290 (328)
T 4fcg_A          279 LEKLDLRGCVNL  290 (328)
T ss_dssp             CCEEECTTCTTC
T ss_pred             CCEEeCCCCCch
Confidence            445555554433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=8.1e-24  Score=190.46  Aligned_cols=87  Identities=26%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~   78 (333)
                      ++|++|++++|.|++..+..|.++++|++|++++|+++++.|++|.++++|++|++++|++++..+..+   .+|+.|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            579999999999997777789999999999999999998889999999999999999999995544434   46667778


Q ss_pred             cCCccccccc
Q 039997           79 GNGDLYGLVE   88 (333)
Q Consensus        79 ~~n~~~~~~~   88 (333)
                      .+|.+..+..
T Consensus       132 ~~n~l~~l~~  141 (353)
T 2z80_A          132 LGNPYKTLGE  141 (353)
T ss_dssp             TTCCCSSSCS
T ss_pred             CCCCCcccCc
Confidence            8887776543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.5e-23  Score=201.44  Aligned_cols=245  Identities=17%  Similarity=0.126  Sum_probs=157.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~   78 (333)
                      ++|++|+|++|.|++..|..|+++++|++|+|++|.++.+.+..|..+++|++|++++|.+++..|..+.   +|+.|++
T Consensus        99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B           99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  178 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence            5799999999999988888899999999999999999988888889999999999999999977776554   5567777


Q ss_pred             cCCccccccccCCCCcccccccccC---------CCCCcCCCCCCCCcc----ccceEEEEeeccccccchhh-hhcccc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYN---------STVPLSLDRSDTRTL----DTQVVVNFMTKNRYESYKGV-ILEYMA  144 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~~L~  144 (333)
                      ++|.+.++.... ...+.......+         ....+.++.+.+...    ...+....+..+.+...... .+++|+
T Consensus       179 ~~N~l~~~~~~~-l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~  257 (597)
T 3oja_B          179 SSNRLTHVDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV  257 (597)
T ss_dssp             TTSCCSBCCGGG-CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             cCCCCCCcChhh-hhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCC
Confidence            888776642111 000000000000         000111111111100    01112222233332222211 156777


Q ss_pred             EEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcC
Q 039997          145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL  224 (333)
Q Consensus       145 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l  224 (333)
                      .|+|++|.+++..|..|.++++|+.|+|++|.+++ .|..+..+++|+.|++++|.++.+++.+..+++|+.|++++|.+
T Consensus       258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence            77777777777777777777777777777777774 34455667777777777777776555666667777777777777


Q ss_pred             cccCCCCccccccCccccCCCCCCCC
Q 039997          225 SCPIPDKEQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       225 ~~~~~~~~~~~~l~~~~~~~n~~~c~  250 (333)
                      +...  ...+..+..+++.+|++.|.
T Consensus       337 ~~~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          337 VTLK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCcC--hhhcCCCCEEEeeCCCCCCh
Confidence            6542  33456667777777777763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.90  E-value=1.8e-23  Score=176.70  Aligned_cols=184  Identities=23%  Similarity=0.292  Sum_probs=150.9

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL   83 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~   83 (333)
                      -+.++.+++.++ .+|..+.  ++|++|+|++|+|+++.|..|.++++|++|+|++|+++...+..|..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            357899999998 6777665  89999999999999999999999999999999999998544444443           


Q ss_pred             ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997           84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD  163 (333)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  163 (333)
                                                                              +++|+.|+|++|+++++.+..|..
T Consensus        87 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~  110 (229)
T 3e6j_A           87 --------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDR  110 (229)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             --------------------------------------------------------CCCcCEEECCCCcCCccChhHhCc
Confidence                                                                    467889999999999888888999


Q ss_pred             ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCc---
Q 039997          164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE---  239 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~---  239 (333)
                      +++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++++.+ .+..+++|+.|++++|++.|.|+....+..+..   
T Consensus       111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~  189 (229)
T 3e6j_A          111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT  189 (229)
T ss_dssp             CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG
T ss_pred             chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc
Confidence            999999999999999 557778999999999999999999887 799999999999999999999975433322211   


Q ss_pred             ---cccCCCCCCCCCCCCCCCCCC
Q 039997          240 ---SSYRGNLNLCCPPINKSCTNL  260 (333)
Q Consensus       240 ---~~~~~n~~~c~~~~~~~c~~~  260 (333)
                         ...++++  +..++...|..+
T Consensus       190 ~~~~~~~g~~--v~~~~~~~C~~~  211 (229)
T 3e6j_A          190 SIAMRWDGKA--VNDPDSAKCAGT  211 (229)
T ss_dssp             GGEEEESSSE--EECTTCSBBTTT
T ss_pred             cccccccCcc--cCCCCcCccCCC
Confidence               1223332  345666778754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=3.1e-24  Score=206.64  Aligned_cols=259  Identities=23%  Similarity=0.205  Sum_probs=122.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccccccc-ccchhhcCCCCCCEEeCCCCcCCCCC--Chh---hhcccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSHNRLNGSI--PSC---ITNLLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~f~~L~~L~~LdLs~N~l~~~~--p~~---l~~L~~   75 (333)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+.+ +.+..|..+++|++|++++|.+++..  +..   +.+|+.
T Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  380 (606)
T 3t6q_A          301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS  380 (606)
T ss_dssp             TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred             ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence            467777777777776666667777777777777776653 33344666666666666666665432  222   334445


Q ss_pred             ccccCCccccccccCC--CCcccccccccC---------------CCCCcCCCCCCC--------CccccceEEEEeecc
Q 039997           76 WKVGNGDLYGLVERGR--DFDLEDIYNYYN---------------STVPLSLDRSDT--------RTLDTQVVVNFMTKN  130 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  130 (333)
                      |++.+|.+.+......  ...+.......+               ....+.++.+.+        ... .......+..+
T Consensus       381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n  459 (606)
T 3t6q_A          381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGN  459 (606)
T ss_dssp             EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTC
T ss_pred             EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCC
Confidence            5555555443321110  000000000000               000011111100        001 11111222222


Q ss_pred             cccc--ch----hhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCC
Q 039997          131 RYES--YK----GVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ  204 (333)
Q Consensus       131 ~~~~--~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  204 (333)
                      .+..  ++    -..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++| .|++++|.+++.
T Consensus       460 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence            2211  00    0014555556666665555555555555666666666666655555555555555 566666666555


Q ss_pred             CC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCC
Q 039997          205 IP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETS  267 (333)
Q Consensus       205 ~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~  267 (333)
                      .+ .+..+++|+.+++++|++.|.|+..+...|+....     ..-.......|..|+...+..
T Consensus       539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~-----~~~~~~~~~~C~~p~~~~g~~  597 (606)
T 3t6q_A          539 LPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM-----QKLEDTEDTLCENPPLLRGVR  597 (606)
T ss_dssp             CGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCG-----GGEECGGGCBEEESGGGTTCB
T ss_pred             CHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCc-----ccccCCCCCeeCCchHhCCCe
Confidence            55 45555556666666666666554433222222110     000112346677776665553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.1e-22  Score=176.55  Aligned_cols=197  Identities=21%  Similarity=0.247  Sum_probs=159.2

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhccccccccCCc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVGNGD   82 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~~n~   82 (333)
                      ..++++++.+.+.  .....+++|+.|++++|.++.+  ..+..+++|+.|++++|.+++ ++  ..+.+|+.|++.+|.
T Consensus        22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC
T ss_pred             HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc
Confidence            3456667777643  4567789999999999999843  358899999999999999985 33  133456677777776


Q ss_pred             cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  162 (333)
                      +.++.....                                            .  .+++|++|++++|++++..+..|.
T Consensus        97 l~~~~~~~~--------------------------------------------~--~l~~L~~L~L~~n~l~~~~~~~~~  130 (272)
T 3rfs_A           97 LQSLPNGVF--------------------------------------------D--KLTNLKELVLVENQLQSLPDGVFD  130 (272)
T ss_dssp             CCCCCTTTT--------------------------------------------T--TCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cCccChhHh--------------------------------------------c--CCcCCCEEECCCCcCCccCHHHhc
Confidence            655321100                                            0  057899999999999988888899


Q ss_pred             CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCcc
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDES  240 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~  240 (333)
                      .+++|+.|++++|++++..+..++.+++|+.|++++|++++..+ .+..+++|+.|++++|.+++..+.. ..+..++.+
T Consensus       131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            99999999999999998888889999999999999999998888 7899999999999999999876653 467788889


Q ss_pred             ccCCCCCCCCCC
Q 039997          241 SYRGNLNLCCPP  252 (333)
Q Consensus       241 ~~~~n~~~c~~~  252 (333)
                      ++.+|++.|..|
T Consensus       211 ~l~~N~~~~~~~  222 (272)
T 3rfs_A          211 WLHDNPWDCTCP  222 (272)
T ss_dssp             ECCSSCBCCCTT
T ss_pred             EccCCCccccCc
Confidence            999999888644

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.9e-23  Score=199.55  Aligned_cols=245  Identities=18%  Similarity=0.179  Sum_probs=179.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L~~   78 (333)
                      ++|++|+|++|.|++..|..|.++++|++|+|++|.++++.|..|.++++|++|+|++|.++...+..   +.+|+.|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            57999999999999888889999999999999999999999999999999999999999999555444   356678888


Q ss_pred             cCCccccccccCC--CCcccccccccCCCCCc-----------CCCCCCCCc--cccceEEEEeeccccccchhhhhccc
Q 039997           79 GNGDLYGLVERGR--DFDLEDIYNYYNSTVPL-----------SLDRSDTRT--LDTQVVVNFMTKNRYESYKGVILEYM  143 (333)
Q Consensus        79 ~~n~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L  143 (333)
                      ++|.+.++.....  ...+.......+.....           .++...+..  .........+..+.+..+++....+|
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L  234 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  234 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence            8888877543211  11111111111111111           111111110  01112223334444555555556789


Q ss_pred             cEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCc
Q 039997          144 AGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNN  223 (333)
Q Consensus       144 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~  223 (333)
                      +.|++++|.+++  +..+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++++..+..+++|+.|++++|.
T Consensus       235 ~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence            999999999986  467889999999999999999988999999999999999999999876677889999999999999


Q ss_pred             CcccCCCCccccccCccccCCCCCC
Q 039997          224 LSCPIPDKEQFSTFDESSYRGNLNL  248 (333)
Q Consensus       224 l~~~~~~~~~~~~l~~~~~~~n~~~  248 (333)
                      ++...+....+..+..+++.+|...
T Consensus       313 l~~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          313 LLHVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             CCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred             CCccCcccccCCCCCEEECCCCCCC
Confidence            9865444456677888888887654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=5.1e-24  Score=199.69  Aligned_cols=215  Identities=20%  Similarity=0.188  Sum_probs=170.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|+|++|.|++..|..|.++++|++|+|++|.+++..|  |..+++|++|++++|.+++..+  ..+|+.|++++|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~L~~L~L~~N  109 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV--GPSIETLHAANN  109 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--CTTCCEEECCSS
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--CCCcCEEECcCC
Confidence            489999999999998888899999999999999999987766  8999999999999999985432  278889999999


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh---hhhccccEEECCCCcccccCC
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG---VILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      .+.++.....           ..                 +....+..+.+....+   ..+++|+.|+|++|.+++..|
T Consensus       110 ~l~~~~~~~l-----------~~-----------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A          110 NISRVSCSRG-----------QG-----------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             CCCCEEECCC-----------SS-----------------CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             cCCCCCcccc-----------CC-----------------CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence            8877543210           01                 1111222222222211   116789999999999998888


Q ss_pred             cccc-CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997          159 SEIG-DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF  237 (333)
Q Consensus       159 ~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l  237 (333)
                      ..+. .+++|+.|+|++|.+++..+  ...+++|+.|++++|.++++++.+..+++|+.|++++|.+++.++....+..+
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L  239 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence            7776 78999999999999996643  33589999999999999988778888999999999999999766555566778


Q ss_pred             CccccCCCCCCCC
Q 039997          238 DESSYRGNLNLCC  250 (333)
Q Consensus       238 ~~~~~~~n~~~c~  250 (333)
                      ..+++.+|+..|+
T Consensus       240 ~~L~l~~N~l~c~  252 (487)
T 3oja_A          240 EHFDLRGNGFHCG  252 (487)
T ss_dssp             CEEECTTCCBCHH
T ss_pred             CEEEcCCCCCcCc
Confidence            8888999998874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=1.9e-23  Score=203.76  Aligned_cols=251  Identities=19%  Similarity=0.187  Sum_probs=161.5

Q ss_pred             CcccEEECCCCcCCCCCC-ccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC--CCCChhh---hcccc
Q 039997            2 SALEILDLRDNYFSGRIP-YGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN--GSIPSCI---TNLLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~--~~~p~~l---~~L~~   75 (333)
                      ++|++|+|++|.+++.+| ..|.++++|++|++++|++.++.+..|..+++|+.|++++|.+.  +..|..+   .+|+.
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            578999999999986555 68899999999999999999888889999999999999999876  3456555   45567


Q ss_pred             ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997           76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG  155 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  155 (333)
                      |++++|.+..+.......        ......+.++...+.......    ........+.+  +++|+.|++++|+++.
T Consensus       485 L~Ls~N~l~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~----~~~~~~~~~~~--l~~L~~L~L~~N~l~~  550 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEG--------LEKLEILDLQHNNLARLWKHA----NPGGPIYFLKG--LSHLHILNLESNGFDE  550 (680)
T ss_dssp             EECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCGGGGSTT----STTSCCCTTTT--CTTCCEEECCSSCCCC
T ss_pred             EECCCCCCCcCChhhhcc--------ccccCEEeCCCCCccccchhh----ccCCcchhhcC--CCCCCEEECCCCCCCC
Confidence            777777776644321110        001111111111111100000    00000001111  6789999999999997


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCC-CCCCCCEEEcccCcCcccCCC-Cc
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLT-ELHSLSKFDVSYNNLSCPIPD-KE  232 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~-~l~~L~~L~l~~N~l~~~~~~-~~  232 (333)
                      +++..|.++++|+.|+|++|+++++++..|..+++|+.|++++|+++++.+ .+. .+++|+.+++++|++.|.|+. .+
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~  630 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW  630 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred             CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence            777889999999999999999998888889999999999999999999888 666 688999999999999999986 33


Q ss_pred             cccccCccccCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 039997          233 QFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKG  270 (333)
Q Consensus       233 ~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~~~  270 (333)
                      ...|+....    ...-+....+.|..|+...+.....
T Consensus       631 ~~~~~~~~~----~~~~~~~~~~~C~~p~~~~g~~l~~  664 (680)
T 1ziw_A          631 FVNWINETH----TNIPELSSHYLCNTPPHYHGFPVRL  664 (680)
T ss_dssp             EECCSSCC------------------------------
T ss_pred             HHHHHHhcC----cccccccCCcEECCchHHCCCcccc
Confidence            333332211    1111123456788777766654433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=9.4e-24  Score=179.63  Aligned_cols=193  Identities=17%  Similarity=0.165  Sum_probs=156.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccc-cccccchhhcCCCCCCEEeCCC-CcCCCCCChhhh---ccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY-LQGPIPHQLCQLRKLSIMDLSH-NRLNGSIPSCIT---NLLFW   76 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~f~~L~~L~~LdLs~-N~l~~~~p~~l~---~L~~L   76 (333)
                      ++|++|++++|.|+++.+..|.++++|++|++++|+ ++.+.+.+|.++++|++|++++ |+++...+..|.   +|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            579999999999998777799999999999999997 9988888999999999999998 999866655554   55666


Q ss_pred             cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhcccc---EEECCCC-c
Q 039997           77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMA---GLDLSSN-E  152 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~  152 (333)
                      ++.+|.+.+++. ...                                               +.+|+   .|++++| +
T Consensus       111 ~l~~n~l~~lp~-~~~-----------------------------------------------l~~L~~L~~L~l~~N~~  142 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTK-----------------------------------------------VYSTDIFFILEITDNPY  142 (239)
T ss_dssp             EEEEECCCSCCC-CTT-----------------------------------------------CCBCCSEEEEEEESCTT
T ss_pred             eCCCCCCccccc-ccc-----------------------------------------------ccccccccEEECCCCcc
Confidence            777776655332 000                                               34455   9999999 9


Q ss_pred             ccccCCccccCccccc-eeecccccCCCCchHHHhCCCCCCEEeccCCc-ccCCCC-CCCCC-CCCCEEEcccCcCcccC
Q 039997          153 LTGDISSEIGDLRNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNK-LNGQIP-QLTEL-HSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l-~~L~~L~l~~N~l~~~~  228 (333)
                      ++++.+..|.++++|+ .|++++|+++.+.+..|.. ++|+.|++++|+ ++.+.+ .+..+ ++|+.|++++|+++...
T Consensus       143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence            9988888899999999 9999999999666666666 889999999995 988877 78888 99999999999998654


Q ss_pred             CCCccccccCccccCCC
Q 039997          229 PDKEQFSTFDESSYRGN  245 (333)
Q Consensus       229 ~~~~~~~~l~~~~~~~n  245 (333)
                      +.  .+..++.+.+.++
T Consensus       222 ~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          222 SK--GLEHLKELIARNT  236 (239)
T ss_dssp             CT--TCTTCSEEECTTC
T ss_pred             hh--HhccCceeeccCc
Confidence            33  5666666655544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.3e-22  Score=180.79  Aligned_cols=192  Identities=17%  Similarity=0.218  Sum_probs=155.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---------
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---------   72 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---------   72 (333)
                      ++|++|+|++|.++ .+|..+.++++|++|+|++|+++ ..|..|..+++|++|++++|++.+.+|..+..         
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            57999999999999 88999999999999999999999 66888999999999999999888888876644         


Q ss_pred             cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--hccccEEECCC
Q 039997           73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--LEYMAGLDLSS  150 (333)
Q Consensus        73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~Ls~  150 (333)
                      ++.|+                                              ...+..+.+..++...  +++|+.|++++
T Consensus       182 l~~L~----------------------------------------------~L~L~~n~l~~lp~~l~~l~~L~~L~L~~  215 (328)
T 4fcg_A          182 LVNLQ----------------------------------------------SLRLEWTGIRSLPASIANLQNLKSLKIRN  215 (328)
T ss_dssp             STTCC----------------------------------------------EEEEEEECCCCCCGGGGGCTTCCEEEEES
T ss_pred             CCCCC----------------------------------------------EEECcCCCcCcchHhhcCCCCCCEEEccC
Confidence            22221                                              1112222333333222  67899999999


Q ss_pred             CcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCC
Q 039997          151 NELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP  229 (333)
Q Consensus       151 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~  229 (333)
                      |++++ .|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..| .+..+++|+.|++++|++.+..|
T Consensus       216 N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             SCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            99995 55579999999999999999999999999999999999999999988888 89999999999999999988877


Q ss_pred             CC-ccccccCcccc
Q 039997          230 DK-EQFSTFDESSY  242 (333)
Q Consensus       230 ~~-~~~~~l~~~~~  242 (333)
                      .. ..+..+....+
T Consensus       295 ~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          295 SLIAQLPANCIILV  308 (328)
T ss_dssp             GGGGGSCTTCEEEC
T ss_pred             HHHhhccCceEEeC
Confidence            53 23333433333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=9.5e-24  Score=187.22  Aligned_cols=215  Identities=20%  Similarity=0.172  Sum_probs=127.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|||++|.|++..|..|.++++|++|+|++|++++..+  |..+++|++|++++|++++. + ...+++.|++.+|
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~-~~~~L~~L~l~~n  109 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L-VGPSIETLHAANN  109 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E-ECTTCCEEECCSS
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c-CCCCcCEEECCCC
Confidence            478999999999998777899999999999999999986665  89999999999999998843 2 2367888888888


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh----hhccccEEECCCCcccccC
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV----ILEYMAGLDLSSNELTGDI  157 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~  157 (333)
                      .+..+..... ..+.......+...  .+....+.. ........+..+.+......    .+++|++|++++|.+++..
T Consensus       110 ~l~~~~~~~~-~~L~~L~l~~N~l~--~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          110 NISRVSCSRG-QGKKNIYLANNKIT--MLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             CCSEEEECCC-SSCEEEECCSSCCC--SGGGBCTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             ccCCcCcccc-CCCCEEECCCCCCC--Cccchhhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            8876543221 11111111111100  000001111 11122223333333222111    1355666666666666442


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      +.  ..+++|+.|+|++|++++.++ .+..+++|+.|++++|.++.+++.+..+++|+.|++++|++.|.
T Consensus       186 ~~--~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          186 GQ--VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             CC--CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             cc--cccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence            22  235666666666666664333 35666666666666666665444556666666666666666644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=8.8e-23  Score=178.19  Aligned_cols=220  Identities=19%  Similarity=0.175  Sum_probs=166.1

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccccCC
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVGNG   81 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~~n   81 (333)
                      ++++.+++.++ .+|..+.  ++|++|++++|.++++.++.|..+++|++|++++|.+++..|..+.   +|+.|++.+|
T Consensus        14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            57999999998 5676553  7999999999999988889999999999999999999977676664   4566777777


Q ss_pred             c-cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh---hhhccccEEECCCCcccccC
Q 039997           82 D-LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG---VILEYMAGLDLSSNELTGDI  157 (333)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~  157 (333)
                      . +..+......        .......+.                 +..+.+.....   ..+++|++|++++|++++..
T Consensus        91 ~~l~~~~~~~~~--------~l~~L~~L~-----------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  145 (285)
T 1ozn_A           91 AQLRSVDPATFH--------GLGRLHTLH-----------------LDRCGLQELGPGLFRGLAALQYLYLQDNALQALP  145 (285)
T ss_dssp             TTCCCCCTTTTT--------TCTTCCEEE-----------------CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccccCHHHhc--------CCcCCCEEE-----------------CCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence            5 4443111100        000111111                 11111111111   01678999999999999888


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCC-Ccccc
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPD-KEQFS  235 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~  235 (333)
                      +..|.++++|+.|++++|++++..+..|..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++...+. ...+.
T Consensus       146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            8889999999999999999997777789999999999999999998877 889999999999999999875433 23566


Q ss_pred             ccCccccCCCCCCCCCC
Q 039997          236 TFDESSYRGNLNLCCPP  252 (333)
Q Consensus       236 ~l~~~~~~~n~~~c~~~  252 (333)
                      .++.+++.+|++.|+.+
T Consensus       226 ~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          226 ALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TCCEEECCSSCEECSGG
T ss_pred             ccCEEeccCCCccCCCC
Confidence            77888899999988543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=2.9e-22  Score=186.26  Aligned_cols=241  Identities=18%  Similarity=0.160  Sum_probs=177.9

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccccC
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVGN   80 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~~   80 (333)
                      .+.++.+++.++ .+|..+.  +++++|+|++|+|+++.+..|.++++|+.|+|++|++++..|..|   .+|+.|++.+
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            467899999998 5777665  689999999999999999999999999999999999997766665   4666788888


Q ss_pred             CccccccccCCC--CcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccc
Q 039997           81 GDLYGLVERGRD--FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTG  155 (333)
Q Consensus        81 n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~  155 (333)
                      |.+..+......  ..+.......+...  .+....+..+.....+.....+....++..   .+++|+.|++++|++++
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIE--SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcc--eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            888765543211  11111111111111  111212222222222222222222222211   16889999999999996


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-cc
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQ  233 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~  233 (333)
                      . | .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++...+.. ..
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            5 3 47889999999999999999889999999999999999999999888 8999999999999999998665543 35


Q ss_pred             ccccCccccCCCCCCCCC
Q 039997          234 FSTFDESSYRGNLNLCCP  251 (333)
Q Consensus       234 ~~~l~~~~~~~n~~~c~~  251 (333)
                      +..++.+++.+|++.|+.
T Consensus       289 l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CTTCCEEECCSSCEECST
T ss_pred             ccCCCEEEccCCCcCCCC
Confidence            677888899999999964

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=2.7e-22  Score=185.87  Aligned_cols=256  Identities=20%  Similarity=0.205  Sum_probs=186.2

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccccC
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVGN   80 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~~   80 (333)
                      .+.++.+++.++ .+|..+.  ++++.|+|++|+|+.+.+..|.++++|++|+|++|+++...+..|   .+|+.|++.+
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            567899999998 6787766  789999999999999999999999999999999999997666665   4566788888


Q ss_pred             CccccccccCCC--CcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccc
Q 039997           81 GDLYGLVERGRD--FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTG  155 (333)
Q Consensus        81 n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~  155 (333)
                      |.+..+......  ..+.......+...  .+....+..+.....+.....+....++..   .+++|+.|++++|+++.
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIE--SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCC--EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCccc--ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            888776542111  11111111111111  111112222222222222221222222211   17889999999999995


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-cc
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQ  233 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~  233 (333)
                      + | .+..+++|+.|+|++|++++..+..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|.++...+.. ..
T Consensus       200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            4 3 47889999999999999998889999999999999999999999888 8999999999999999999766544 45


Q ss_pred             ccccCccccCCCCCCCCCC-----------------CCCCCCCCCCcCCC
Q 039997          234 FSTFDESSYRGNLNLCCPP-----------------INKSCTNLPELLET  266 (333)
Q Consensus       234 ~~~l~~~~~~~n~~~c~~~-----------------~~~~c~~~~~~~~~  266 (333)
                      +..++.+++.+|++.|+..                 ....|..|+...+.
T Consensus       278 l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~  327 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGR  327 (440)
T ss_dssp             CTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTC
T ss_pred             ccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCc
Confidence            6778888999999999531                 12457777666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=8.8e-24  Score=190.22  Aligned_cols=229  Identities=18%  Similarity=0.166  Sum_probs=141.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hh---hhcccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SC---ITNLLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~---l~~L~~L~   77 (333)
                      ++|++|+|++|.|++..|..|.++++|++|++++|+++++.+..|.++++|++|++++|+++...+ ..   +.+|+.|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence            689999999999998888899999999999999999998888889999999999999999984433 23   45666777


Q ss_pred             ccCCc-ccccccc-CC-CCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh---hccccEEECCCC
Q 039997           78 VGNGD-LYGLVER-GR-DFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI---LEYMAGLDLSSN  151 (333)
Q Consensus        78 ~~~n~-~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~L~~L~Ls~n  151 (333)
                      +.+|. +..+... .. ...+.......+....  .....+.... ......+..+.....+...   +++|+.|++++|
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--ECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCCcCc--cCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            77763 4333211 10 0011111111111100  0001111111 1122222333332222211   345555555555


Q ss_pred             cccccCCcccc---CccccceeecccccCCC----CchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCc
Q 039997          152 ELTGDISSEIG---DLRNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNN  223 (333)
Q Consensus       152 ~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~  223 (333)
                      ++++..+..+.   ....++.++++++.+++    ..|..+..+++|+.|++++|+++.+++ .+..+++|+.|++++|+
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            55544333222   23344555555554443    245678888899999999999987766 46888999999999999


Q ss_pred             CcccCCCCcc
Q 039997          224 LSCPIPDKEQ  233 (333)
Q Consensus       224 l~~~~~~~~~  233 (333)
                      +.|.|+....
T Consensus       313 ~~~~~~~l~~  322 (353)
T 2z80_A          313 WDCSCPRIDY  322 (353)
T ss_dssp             BCCCHHHHHH
T ss_pred             ccCcCCCcHH
Confidence            9998875443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.89  E-value=1.4e-23  Score=189.58  Aligned_cols=177  Identities=25%  Similarity=0.235  Sum_probs=124.0

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhc-CCCCCCEEeCCCCcCCCCCChhhh---ccccccccC
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVGN   80 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~-~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~~   80 (333)
                      ++++++++.++ .+|..+.  +.++.|+|++|+|+++.+..|. ++++|+.|+|++|+|+...+..|.   +|+.|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            35666666666 3554443  3466666666666666666665 666666666666666644444343   334444445


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE  160 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  160 (333)
                      |.+..+....                                            +.+  +.+|+.|+|++|+++++.+..
T Consensus        98 N~l~~~~~~~--------------------------------------------~~~--l~~L~~L~L~~N~i~~~~~~~  131 (361)
T 2xot_A           98 NHLHTLDEFL--------------------------------------------FSD--LQALEVLLLYNNHIVVVDRNA  131 (361)
T ss_dssp             SCCCEECTTT--------------------------------------------TTT--CTTCCEEECCSSCCCEECTTT
T ss_pred             CcCCcCCHHH--------------------------------------------hCC--CcCCCEEECCCCcccEECHHH
Confidence            4443321100                                            000  577999999999999998999


Q ss_pred             ccCccccceeecccccCCCCchHHH---hCCCCCCEEeccCCcccCCCC-CCCCCCC--CCEEEcccCcCcccCCC
Q 039997          161 IGDLRNIHGLNLSHNFLSGSIPESF---SNLKMIESLDLSHNKLNGQIP-QLTELHS--LSKFDVSYNNLSCPIPD  230 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~-~~~~l~~--L~~L~l~~N~l~~~~~~  230 (333)
                      |.++++|+.|+|++|+|+++++..|   ..+++|+.|+|++|+++.+++ .+..++.  ++.|++++|++.|.|..
T Consensus       132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            9999999999999999998777776   578999999999999998776 6777776  48899999999999854

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=1e-23  Score=186.65  Aligned_cols=200  Identities=21%  Similarity=0.212  Sum_probs=103.0

Q ss_pred             CcccEEECCCCcCCCCCCccc--cCCcccceeeccccccccccchhhcCC-----CCCCEEeCCCCcCCCCCChhhh---
Q 039997            2 SALEILDLRDNYFSGRIPYGI--NEHSNLRALLLKGNYLQGPIPHQLCQL-----RKLSIMDLSHNRLNGSIPSCIT---   71 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~f~~L-----~~L~~LdLs~N~l~~~~p~~l~---   71 (333)
                      ++|++|+|++|.+++..|..+  .++++|++|++++|++++. |..|..+     ++|++|++++|++++..|..+.   
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            356677777777766666654  6667777777777777655 5556655     6777777777776655544443   


Q ss_pred             ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCC
Q 039997           72 NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSN  151 (333)
Q Consensus        72 ~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  151 (333)
                      +|+.|++++|.+.+......                                          .+....+++|++|++++|
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~------------------------------------------~~~~~~l~~L~~L~L~~N  211 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLIS------------------------------------------ALCPLKFPTLQVLALRNA  211 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHH------------------------------------------HSCTTSCTTCCEEECTTS
T ss_pred             CCCEEECCCCCcCcchHHHH------------------------------------------HHHhccCCCCCEEECCCC
Confidence            33344444444332100000                                          000000344555555555


Q ss_pred             cccc---cCCccccCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          152 ELTG---DISSEIGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       152 ~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      ++++   .....+.++++|+.|++++|++++..| ..+..+++|+.|++++|.++.++..+.  ++|+.|++++|.+++.
T Consensus       212 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC
Confidence            5552   122333445555555555555554432 234445555555555555554333332  4555555555555544


Q ss_pred             CCCCccccccCccccCCCCC
Q 039997          228 IPDKEQFSTFDESSYRGNLN  247 (333)
Q Consensus       228 ~~~~~~~~~l~~~~~~~n~~  247 (333)
                       |....+..++.+++.+|+.
T Consensus       290 -p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          290 -PSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             -CCTTTSCEEEEEECTTCTT
T ss_pred             -hhHhhCCCCCEEeccCCCC
Confidence             3333444445555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=5.8e-23  Score=197.76  Aligned_cols=227  Identities=22%  Similarity=0.178  Sum_probs=171.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc--chhhcCCCCCCEEeCCCCcCCCCCChh---hhccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI--PHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFW   76 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L   76 (333)
                      ++|++|++++|...+..  .+..+++|++|++++|++++..  |..+..+++|++|++++|.+++ +|..   +.+|+.|
T Consensus       328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL  404 (606)
T ss_dssp             SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred             CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence            68999999999665333  6789999999999999998763  8899999999999999999874 4444   4566677


Q ss_pred             cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc-
Q 039997           77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-  155 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-  155 (333)
                      ++.+|.+.+...........       ....+.++.+....            .....+.+  +++|++|++++|.+++ 
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~-------~L~~L~l~~n~l~~------------~~~~~~~~--l~~L~~L~l~~n~l~~~  463 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLE-------KLLYLDISYTNTKI------------DFDGIFLG--LTSLNTLKMAGNSFKDN  463 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCT-------TCCEEECTTSCCEE------------CCTTTTTT--CTTCCEEECTTCEEGGG
T ss_pred             ECCCCccCCccChhhhhccc-------cCCEEECcCCCCCc------------cchhhhcC--CCCCCEEECCCCcCCCc
Confidence            78888776643211111011       11111111111100            00001111  6789999999999997 


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccc
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQF  234 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~  234 (333)
                      ..|..|.++++|+.|++++|++++..|..++.+++|+.|++++|++++..| .+..+++|+.|++++|.++...+....+
T Consensus       464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l  543 (606)
T 3vq2_A          464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF  543 (606)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGS
T ss_pred             chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhh
Confidence            478999999999999999999998889999999999999999999999877 8999999999999999999655444445


Q ss_pred             c-ccCccccCCCCCCCCCC
Q 039997          235 S-TFDESSYRGNLNLCCPP  252 (333)
Q Consensus       235 ~-~l~~~~~~~n~~~c~~~  252 (333)
                      . .++.+++.+|++.|+.+
T Consensus       544 ~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          544 PKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTCCEEECCSCCCCCSST
T ss_pred             cccCcEEEccCCCcccCCc
Confidence            4 47888999999999654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=2.6e-22  Score=195.74  Aligned_cols=228  Identities=21%  Similarity=0.149  Sum_probs=174.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc-chhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~   77 (333)
                      ++|++|++++|.+++..|..|.++++|++|++++|++++.. +..|.++++|++|++++|++....+..|   .+|+.|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence            47999999999999989999999999999999999998644 5789999999999999999986666655   4566777


Q ss_pred             ccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCccc
Q 039997           78 VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELT  154 (333)
Q Consensus        78 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~  154 (333)
                      +.+|.+..+.......      ......                 ....+..+.+...+..   .+++|+.|++++|+++
T Consensus       461 l~~n~l~~~~~~p~~~------~~l~~L-----------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPF------QPLRNL-----------------TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             CTTSCCBCTTCSSCTT------TTCTTC-----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             hccccccccccCCccc------ccCCCC-----------------CEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence            7777665421111100      000011                 1111222222222111   1678999999999998


Q ss_pred             ccCC--------ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCc
Q 039997          155 GDIS--------SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       155 ~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~  225 (333)
                      +..+        ..|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++++++ .+..+++|+.|++++|.++
T Consensus       518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            7533        347889999999999999998777889999999999999999999888 7889999999999999999


Q ss_pred             ccCCCCc--cccccCccccCCCCCCCCCC
Q 039997          226 CPIPDKE--QFSTFDESSYRGNLNLCCPP  252 (333)
Q Consensus       226 ~~~~~~~--~~~~l~~~~~~~n~~~c~~~  252 (333)
                      ...+...  .+..+..+++.+|++.|+.+
T Consensus       598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          598 SVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             BCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ccChhHhcccccccCEEEccCCCcccCCc
Confidence            7655432  46778889999999999654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=2.7e-22  Score=176.91  Aligned_cols=240  Identities=20%  Similarity=0.205  Sum_probs=172.9

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCC--CChh---hhcccccccc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS--IPSC---ITNLLFWKVG   79 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~--~p~~---l~~L~~L~~~   79 (333)
                      +.++.+++.++ .+|..+.  ++|++|++++|+++.+.++.|.++++|++|++++|+++..  .|..   +.+|+.|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            57899999998 6776655  6899999999999988888899999999999999999732  2333   4567788888


Q ss_pred             CCccccccccCCC-CcccccccccCCCCCcCCCC-CCCCccccceEEEEeeccccccchhh---hhccccEEECCCCccc
Q 039997           80 NGDLYGLVERGRD-FDLEDIYNYYNSTVPLSLDR-SDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELT  154 (333)
Q Consensus        80 ~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~  154 (333)
                      +|.+..+...... ..+.......+...  .+.. ..+.... .+....+..+........   .+++|++|++++|.++
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLK--QMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEE--SSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCccccChhhcCCCCCCCEEECCCCccc--ccccchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            8887765432111 11111111111110  0100 1111111 122223333333222111   1678999999999998


Q ss_pred             c-cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-
Q 039997          155 G-DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-  231 (333)
Q Consensus       155 ~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-  231 (333)
                      + ..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..+.. 
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            6 678899999999999999999998888899999999999999999998888 8899999999999999998876644 


Q ss_pred             ccc-cccCccccCCCCCCCC
Q 039997          232 EQF-STFDESSYRGNLNLCC  250 (333)
Q Consensus       232 ~~~-~~l~~~~~~~n~~~c~  250 (333)
                      ..+ ..++.+++.+|++.|+
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECS
T ss_pred             HhhhccCCEEEccCCCeecc
Confidence            334 4778889999998885

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=2.2e-21  Score=186.79  Aligned_cols=245  Identities=16%  Similarity=0.121  Sum_probs=152.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~   78 (333)
                      +++++|||++|.|++..|..|.++++|++|+|++|+++++.|++|.++++|++|++++|++++..|..|.   +|+.|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            5678888888888877788888888888888888888888888888888888888888888766665554   4556666


Q ss_pred             cCCccccccccCC--CCcccccccccCC--------------CCCcCCCCCCCCcc--------ccceE-EEEeeccccc
Q 039997           79 GNGDLYGLVERGR--DFDLEDIYNYYNS--------------TVPLSLDRSDTRTL--------DTQVV-VNFMTKNRYE  133 (333)
Q Consensus        79 ~~n~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~  133 (333)
                      .+|.+..+.....  ...+.......+.              ...+.++...+...        ..... ...+..+.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            6776665422111  1111111111111              11111111111110        00000 1111111111


Q ss_pred             cch------------------------------------------------------hhhhccccEEECCCCcccccCCc
Q 039997          134 SYK------------------------------------------------------GVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus       134 ~~~------------------------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      ...                                                      +....+|+.|++++|.+++..+.
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            000                                                      00011577778888888877777


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC--ccccc
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK--EQFST  236 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~--~~~~~  236 (333)
                      .|.++++|+.|++++|+++ ..|..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+..+..  ..+..
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            7888888888888888888 455667788888888888888887766 7778888888888888877555432  34556


Q ss_pred             cCccccCCCCC
Q 039997          237 FDESSYRGNLN  247 (333)
Q Consensus       237 l~~~~~~~n~~  247 (333)
                      ++.+++.+|..
T Consensus       352 L~~L~l~~n~l  362 (606)
T 3t6q_A          352 LRELDLSHDDI  362 (606)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECCCCcc
Confidence            66666666643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.5e-21  Score=162.43  Aligned_cols=158  Identities=22%  Similarity=0.255  Sum_probs=136.3

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLY   84 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~   84 (333)
                      +.++.+++.++ .+|..+.  ++|++|++++|+++++.+..|..+++|++|++++|+++...+..|..            
T Consensus        10 ~~v~c~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------   74 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK------------   74 (208)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEEEecCCCcc-CCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC------------
Confidence            57889999998 5665553  68999999999999888888999999999999999998544444433            


Q ss_pred             cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCc
Q 039997           85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL  164 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  164 (333)
                                                                             +++|++|++++|++++..+..|.++
T Consensus        75 -------------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l   99 (208)
T 2o6s_A           75 -------------------------------------------------------LTSLTYLNLSTNQLQSLPNGVFDKL   99 (208)
T ss_dssp             -------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             -------------------------------------------------------CCCcCEEECCCCcCCccCHhHhcCc
Confidence                                                                   4668899999999998888889999


Q ss_pred             cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997          165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE  232 (333)
Q Consensus       165 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~  232 (333)
                      ++|+.|++++|++++..+..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|++.|.|+...
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~  168 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR  168 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTH
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHH
Confidence            999999999999998888888999999999999999998887 68889999999999999999987654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=3.5e-23  Score=183.16  Aligned_cols=177  Identities=24%  Similarity=0.265  Sum_probs=144.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCC-----cccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCC-------CChh
Q 039997            2 SALEILDLRDNYFSGRIPYGINEH-----SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-------IPSC   69 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l-----~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~-------~p~~   69 (333)
                      ++|++|+|++|.+++. |..+.++     ++|++|++++|+++++.|+.|..+++|++|++++|++.+.       .+..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            5799999999999976 8888888     9999999999999999999999999999999999997643       1244


Q ss_pred             hhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECC
Q 039997           70 ITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLS  149 (333)
Q Consensus        70 l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  149 (333)
                      +.+|+.|++++|.+..+.......                                         +  ..+++|+.|+++
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~-----------------------------------------~--~~l~~L~~L~Ls  236 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSAL-----------------------------------------A--AARVQLQGLDLS  236 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHH-----------------------------------------H--HTTCCCSEEECT
T ss_pred             CCCCCEEECCCCcCcchHHHHHHH-----------------------------------------H--hcCCCCCEEECC
Confidence            567778888887776421100000                                         0  004789999999


Q ss_pred             CCcccccCC-ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997          150 SNELTGDIS-SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       150 ~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  226 (333)
                      +|++++..| ..+..+++|+.|+|++|+++ .+|..+.  ++|+.|++++|++++. |.+..+++|+.|++++|++++
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence            999998775 56777899999999999999 4455444  8899999999999988 548899999999999999975

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=3.4e-22  Score=166.28  Aligned_cols=156  Identities=22%  Similarity=0.230  Sum_probs=138.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|++++|.+++..+..|.++++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..         
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------   98 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK---------   98 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------
Confidence            57999999999999777778999999999999999999888888999999999999999998554444433         


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                                                                                +++|++|++++|++++..+..|
T Consensus        99 ----------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~  120 (208)
T 2o6s_A           99 ----------------------------------------------------------LTQLKELALNTNQLQSLPDGVF  120 (208)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred             ----------------------------------------------------------ccCCCEEEcCCCcCcccCHhHh
Confidence                                                                      4678899999999998888889


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCC
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD  230 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  230 (333)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+      ..+.|+.+++..|.+++..|.
T Consensus       121 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBC
T ss_pred             ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeec
Confidence            999999999999999998888889999999999999998774      456889999999999988775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=3.5e-21  Score=183.75  Aligned_cols=106  Identities=20%  Similarity=0.175  Sum_probs=81.4

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCc--hHHHhCCCCCCEEeccCCcccC-CCC-CCCCCCCCC
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI--PESFSNLKMIESLDLSHNKLNG-QIP-QLTELHSLS  215 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~  215 (333)
                      +++|++|++++|++++..|..+.++++|+.|++++|++++..  |..+..+++|+.|++++|.+++ .++ .+..+++|+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            567899999999999888888999999999999999998754  4668889999999999999988 444 577778888


Q ss_pred             EEEcccCcCcccCCCCccccccCccccCCCC
Q 039997          216 KFDVSYNNLSCPIPDKEQFSTFDESSYRGNL  246 (333)
Q Consensus       216 ~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~  246 (333)
                      .|++++|.+++..+.... ..++.+++.+|.
T Consensus       432 ~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~  461 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP-PKVKVLDLHNNR  461 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC-TTCSEEECCSSC
T ss_pred             EEECCCCCCCcchhhhhc-CcCCEEECCCCc
Confidence            888888887654433211 345555555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=2.1e-22  Score=194.42  Aligned_cols=216  Identities=19%  Similarity=0.212  Sum_probs=167.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc-chhhcCCCCCCEEeCCCCcCCCCCChhhh---cccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~   77 (333)
                      .+|+.++++.|.+. ..+..+.++++|+.++++.|...... +..|..+.+++.++++.|.+....+..+.   .++.|+
T Consensus       397 ~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~  475 (635)
T 4g8a_A          397 ISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  475 (635)
T ss_dssp             SCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             hhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence            47889999999988 45677889999999999988876444 46789999999999999999876665554   445555


Q ss_pred             ccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccC
Q 039997           78 VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDI  157 (333)
Q Consensus        78 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  157 (333)
                      +.+|......  .+                                         ..+.+  +++|+.|+|++|+++++.
T Consensus       476 Ls~N~~~~~~--~~-----------------------------------------~~~~~--l~~L~~L~Ls~N~L~~l~  510 (635)
T 4g8a_A          476 MAGNSFQENF--LP-----------------------------------------DIFTE--LRNLTFLDLSQCQLEQLS  510 (635)
T ss_dssp             CTTCEEGGGE--EC-----------------------------------------SCCTT--CTTCCEEECTTSCCCEEC
T ss_pred             hhhccccccc--Cc-----------------------------------------hhhhh--ccccCEEECCCCccCCcC
Confidence            5555432200  00                                         00001  578999999999999999


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC-CCCCEEEcccCcCcccCCCCcccc
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL-HSLSKFDVSYNNLSCPIPDKEQFS  235 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~  235 (333)
                      |..|.++++|+.|+|++|+|+++++..|+.+++|++||+++|++++..+ .+..+ .+|+.|++++|+|.|+|...+...
T Consensus       511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~  590 (635)
T 4g8a_A          511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ  590 (635)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence            9999999999999999999999999999999999999999999999988 88888 589999999999999997544444


Q ss_pred             ccCccccCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 039997          236 TFDESSYRGNLNLCCPPINKSCTNLPELLETSS  268 (333)
Q Consensus       236 ~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~  268 (333)
                      |++..     ...-..+..+.|..|+...+.+.
T Consensus       591 wl~~~-----~~~~~~~~~~~C~~P~~~~g~~l  618 (635)
T 4g8a_A          591 WIKDQ-----RQLLVEVERMECATPSDKQGMPV  618 (635)
T ss_dssp             HHHHT-----TTTBSCGGGCBBCSSTTTTTCBG
T ss_pred             HHHhC-----CCccCCCCCceeCCchHHCCCEe
Confidence            44321     11112244567888877766643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=193.31  Aligned_cols=214  Identities=21%  Similarity=0.237  Sum_probs=150.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc--chhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI--PHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~   77 (333)
                      ++|++|++++|.+.+..+.  ..+++|++|++++|++++..  |..+.++++|++|++++|.+.+..+.  .+.+|+.|+
T Consensus       325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~  402 (570)
T 2z63_A          325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  402 (570)
T ss_dssp             SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEE
Confidence            5678888888887755544  66788888888888887554  67778888888888888887643322  234555666


Q ss_pred             ccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccc-cc
Q 039997           78 VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT-GD  156 (333)
Q Consensus        78 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~  156 (333)
                      +.+|.+............       .....+.++.+....            .....+.+  +++|+.|++++|.++ +.
T Consensus       403 l~~n~l~~~~~~~~~~~l-------~~L~~L~l~~n~l~~------------~~~~~~~~--l~~L~~L~l~~n~l~~~~  461 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTRV------------AFNGIFNG--LSSLEVLKMAGNSFQENF  461 (570)
T ss_dssp             CTTSEEESCTTSCTTTTC-------TTCCEEECTTSCCEE------------CCTTTTTT--CTTCCEEECTTCEEGGGE
T ss_pred             ccCCccccccchhhhhcC-------CCCCEEeCcCCcccc------------cchhhhhc--CCcCcEEECcCCcCcccc
Confidence            666665543211100000       001111111111000            00001111  678999999999997 57


Q ss_pred             CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccc-
Q 039997          157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQF-  234 (333)
Q Consensus       157 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~-  234 (333)
                      .|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++.++ .+..+++|+.+++++|+++|.|+....+ 
T Consensus       462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  541 (570)
T 2z63_A          462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS  541 (570)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred             chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHH
Confidence            88999999999999999999998888999999999999999999999888 7899999999999999999999987666 


Q ss_pred             cccC
Q 039997          235 STFD  238 (333)
Q Consensus       235 ~~l~  238 (333)
                      .|+.
T Consensus       542 ~wl~  545 (570)
T 2z63_A          542 RWLN  545 (570)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=178.50  Aligned_cols=200  Identities=20%  Similarity=0.172  Sum_probs=118.1

Q ss_pred             CcccEEECCCCcCCCCCCccc--cCCcccceeeccccccccccc----hhhcCCCCCCEEeCCCCcCCCCCChhh---hc
Q 039997            2 SALEILDLRDNYFSGRIPYGI--NEHSNLRALLLKGNYLQGPIP----HQLCQLRKLSIMDLSHNRLNGSIPSCI---TN   72 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~----~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~   72 (333)
                      ++|++|++++|.+++..|..+  .++++|++|++++|++++..+    ..+..+++|++|++++|++.+..|..+   .+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            458999999999998899888  899999999999999986544    455689999999999999987766654   45


Q ss_pred             cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc
Q 039997           73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE  152 (333)
Q Consensus        73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  152 (333)
                      |+.|++++|.+.+...........                                          .+++|++|++++|+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------------~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPH------------------------------------------KFPAIQNLALRNTG  208 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTT------------------------------------------SSCCCCSCBCCSSC
T ss_pred             CCEEECCCCCCccchhhhHHHhhh------------------------------------------cCCCCCEEECCCCC
Confidence            566677777654311000000000                                          03445555555555


Q ss_pred             ccccCCc---cccCccccceeecccccCCCCchHHHhCC---CCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997          153 LTGDISS---EIGDLRNIHGLNLSHNFLSGSIPESFSNL---KMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       153 l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  226 (333)
                      ++...+.   .+.++++|++|+|++|++++..|..+..+   ++|++|++++|+++.++..+.  ++|+.|++++|.+++
T Consensus       209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS
T ss_pred             CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC
Confidence            5422111   23444555555555555554444334333   355555555555554333332  455555555555554


Q ss_pred             cCCCCccccccCccccCCCC
Q 039997          227 PIPDKEQFSTFDESSYRGNL  246 (333)
Q Consensus       227 ~~~~~~~~~~l~~~~~~~n~  246 (333)
                      . |....+..++.+.+.+|+
T Consensus       287 ~-~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          287 A-PQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             C-CCTTSCCCCSCEECSSTT
T ss_pred             C-chhhhCCCccEEECcCCC
Confidence            2 222334444444555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=2.9e-22  Score=193.38  Aligned_cols=160  Identities=27%  Similarity=0.296  Sum_probs=108.3

Q ss_pred             CCcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997            1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN   80 (333)
Q Consensus         1 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~   80 (333)
                      ++++++|||++|.|+++.+.+|.++++|++|+|++|+|+++.|++|.++++|++|+|++|++++..+..|.++       
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L-------  123 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-------  123 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC-------
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC-------
Confidence            3578899999999997777889999999999999999998888899999999999999999886555555543       


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE  160 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  160 (333)
                                                                                  .+|++|+|++|+++++.+..
T Consensus       124 ------------------------------------------------------------~~L~~L~Ls~N~l~~l~~~~  143 (635)
T 4g8a_A          124 ------------------------------------------------------------SSLQKLVAVETNLASLENFP  143 (635)
T ss_dssp             ------------------------------------------------------------TTCCEEECTTSCCCCSTTCC
T ss_pred             ------------------------------------------------------------CCCCEEECCCCcCCCCChhh
Confidence                                                                        44555666666666555555


Q ss_pred             ccCccccceeecccccCCCC-chHHHhCCCCCCEEeccCCcccCCCC-CCCCCCC----CCEEEcccCcCccc
Q 039997          161 IGDLRNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP-QLTELHS----LSKFDVSYNNLSCP  227 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~----L~~L~l~~N~l~~~  227 (333)
                      |+++++|++|+|++|.+++. .|..++.+++|+.|++++|+++++.+ .+..+.+    ...++++.|.+...
T Consensus       144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i  216 (635)
T 4g8a_A          144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  216 (635)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence            66666666666666665543 34555556666666666666655544 3333222    23455555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=2e-21  Score=188.02  Aligned_cols=242  Identities=18%  Similarity=0.206  Sum_probs=121.7

Q ss_pred             CcccEEECCCCcCCCCCCc--cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc----ccc
Q 039997            2 SALEILDLRDNYFSGRIPY--GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN----LLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~----L~~   75 (333)
                      ++|++|++++|.++ .+|.  .++++++|++|++++|++++.+| .|..+++|+.|++++|+++ .+|..+..    |+.
T Consensus       305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~  381 (636)
T 4eco_A          305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN  381 (636)
T ss_dssp             GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred             CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence            56788888888887 6777  78888888888888888876666 7777778888888888777 56655533    555


Q ss_pred             ccccCCccccccccCCCCc---ccccccccCCC---CCcCCCCCCCCc-cccceEEEEeeccccccchhhh---hccccE
Q 039997           76 WKVGNGDLYGLVERGRDFD---LEDIYNYYNST---VPLSLDRSDTRT-LDTQVVVNFMTKNRYESYKGVI---LEYMAG  145 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---l~~L~~  145 (333)
                      |++++|.+..++.......   +.......+..   .+..+....... .........+..+.+..++...   +++|+.
T Consensus       382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS  461 (636)
T ss_dssp             EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred             EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence            6667777665544322211   11111111111   111111000000 0112233333344443333222   345555


Q ss_pred             EECCCCcccccCCccccCcc-------ccceeecccccCCCCchHHHh--CCCCCCEEeccCCcccCCCCCCCCCCCCCE
Q 039997          146 LDLSSNELTGDISSEIGDLR-------NIHGLNLSHNFLSGSIPESFS--NLKMIESLDLSHNKLNGQIPQLTELHSLSK  216 (333)
Q Consensus       146 L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~  216 (333)
                      |++++|+++.+++..+....       +|+.|+|++|+++ .+|..+.  .+++|+.|++++|.+++++..+..+++|+.
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~  540 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG  540 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred             EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence            55555555533333333222       5555555555555 2333333  555555555555555553224445555555


Q ss_pred             EEcc------cCcCcccCCCC-ccccccCccccCCCCC
Q 039997          217 FDVS------YNNLSCPIPDK-EQFSTFDESSYRGNLN  247 (333)
Q Consensus       217 L~l~------~N~l~~~~~~~-~~~~~l~~~~~~~n~~  247 (333)
                      |+++      +|.+.+..|.. ..+..++.+++.+|..
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            5552      33344333322 2334444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=1.6e-21  Score=188.72  Aligned_cols=82  Identities=15%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccc-ccc-ccchhhcCC------CCCCEEeCCCCcCCCCCCh--hhh
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY-LQG-PIPHQLCQL------RKLSIMDLSHNRLNGSIPS--CIT   71 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~f~~L------~~L~~LdLs~N~l~~~~p~--~l~   71 (333)
                      ++|++|+|++|.+.+.+|..|.++++|++|++++|+ +++ ..|..+..+      ++|++|++++|+++ .+|.  .+.
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~  327 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ  327 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred             CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence            578999999999999999999999999999999998 887 788877776      89999999999998 7776  554


Q ss_pred             ---ccccccccCCccc
Q 039997           72 ---NLLFWKVGNGDLY   84 (333)
Q Consensus        72 ---~L~~L~~~~n~~~   84 (333)
                         +|+.|++.+|.+.
T Consensus       328 ~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          328 KMKKLGMLECLYNQLE  343 (636)
T ss_dssp             TCTTCCEEECCSCCCE
T ss_pred             cCCCCCEEeCcCCcCc
Confidence               4556677777776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=7.7e-22  Score=188.32  Aligned_cols=117  Identities=23%  Similarity=0.298  Sum_probs=88.5

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD  218 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~  218 (333)
                      +++|+.|++++|++++..|..+.  ++|+.|+|++|+++.++ ..+..+++|+.|++++|+++.+++ .+..+++|+.++
T Consensus       427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC-TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred             cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC-hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence            57899999999999876655443  68999999999999554 445599999999999999998777 489999999999


Q ss_pred             cccCcCcccCCCCcccc-ccCccc-cCCCCCCCCCCCCCCCCC
Q 039997          219 VSYNNLSCPIPDKEQFS-TFDESS-YRGNLNLCCPPINKSCTN  259 (333)
Q Consensus       219 l~~N~l~~~~~~~~~~~-~l~~~~-~~~n~~~c~~~~~~~c~~  259 (333)
                      +++|++.|.|+..+.+. +..... ...+...|+.+....|..
T Consensus       504 l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          504 LHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             CCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred             ecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence            99999999997654433 221111 011223356777888876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=3.3e-21  Score=182.21  Aligned_cols=107  Identities=24%  Similarity=0.242  Sum_probs=84.4

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCC--CchHHHhCCCCCCEEeccCCcccC-CCC-CCCCCCCCC
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG--SIPESFSNLKMIESLDLSHNKLNG-QIP-QLTELHSLS  215 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~  215 (333)
                      +++|++|++++|++++..|..+.++++|+.|++++|++++  ..|..++.+++|+.|++++|.+++ +++ .+..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            6789999999999998889999999999999999999996  345779999999999999999998 444 577888888


Q ss_pred             EEEcccCcCcccCCCCccccccCccccCCCCC
Q 039997          216 KFDVSYNNLSCPIPDKEQFSTFDESSYRGNLN  247 (333)
Q Consensus       216 ~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~  247 (333)
                      .|++++|.+++..+.... ..++.+++.+|..
T Consensus       403 ~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l  433 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP-PRIKVLDLHSNKI  433 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC-TTCCEEECCSSCC
T ss_pred             EEECcCCCCCcchhhhhc-ccCCEEECCCCcc
Confidence            888888888654432211 3445555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=8.3e-22  Score=177.86  Aligned_cols=174  Identities=22%  Similarity=0.221  Sum_probs=136.1

Q ss_pred             cceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh----hhhccccccccCCccccccccCCCCcccccccccC
Q 039997           28 LRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS----CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN  103 (333)
Q Consensus        28 L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~----~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~  103 (333)
                      -+.+++++|.++. +|..+.  ..++.|+|++|+++...+.    .+.+|+.|++.+|.+..+....             
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-------------   83 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA-------------   83 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT-------------
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh-------------
Confidence            4789999999995 454443  5689999999999966555    3456777888888776643210             


Q ss_pred             CCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchH
Q 039997          104 STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE  183 (333)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  183 (333)
                                                     +.+  +++|+.|+|++|+++.+.+..|.++++|+.|+|++|+|++..+.
T Consensus        84 -------------------------------~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  130 (361)
T 2xot_A           84 -------------------------------FVP--VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN  130 (361)
T ss_dssp             -------------------------------TTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             -------------------------------ccC--CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence                                           000  57899999999999999889999999999999999999988899


Q ss_pred             HHhCCCCCCEEeccCCcccCCCC-CC---CCCCCCCEEEcccCcCcccCCCC-ccccc--cCccccCCCCCCCC
Q 039997          184 SFSNLKMIESLDLSHNKLNGQIP-QL---TELHSLSKFDVSYNNLSCPIPDK-EQFST--FDESSYRGNLNLCC  250 (333)
Q Consensus       184 ~~~~l~~L~~L~L~~N~l~~~~~-~~---~~l~~L~~L~l~~N~l~~~~~~~-~~~~~--l~~~~~~~n~~~c~  250 (333)
                      .|..+++|+.|+|++|.++.+++ .+   ..+++|+.|++++|.++...+.. ..+..  +..+.+.+|++.|+
T Consensus       131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            99999999999999999998877 55   56899999999999998543221 12222  25678889999985

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2e-21  Score=171.54  Aligned_cols=189  Identities=17%  Similarity=0.246  Sum_probs=133.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~   79 (333)
                      ++|++|++++|.++. ++ .+..+++|++|++++|+++++.+  +..+++|++|++++|++++ ++.  .+.+|+.|+++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECT
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECC
Confidence            468999999999984 45 68889999999999999986665  8999999999999999984 331  23566677778


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCC
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      +|.+..+......          .....+.++.+                 .+...+. ..+++|+.|++++|++++..+
T Consensus       116 ~n~l~~~~~l~~l----------~~L~~L~l~~n-----------------~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  168 (308)
T 1h6u_A          116 STQITDVTPLAGL----------SNLQVLYLDLN-----------------QITNISPLAGLTNLQYLSIGNAQVSDLTP  168 (308)
T ss_dssp             TSCCCCCGGGTTC----------TTCCEEECCSS-----------------CCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCCchhhcCC----------CCCCEEECCCC-----------------ccCcCccccCCCCccEEEccCCcCCCChh
Confidence            8777664321111          11111111111                 1111111 115678888888888876544


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                        +..+++|+.|++++|++++..+  +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus       169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred             --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence              7788888888888888886544  7778888888888888876654 67778888888888888653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=4.7e-22  Score=175.75  Aligned_cols=178  Identities=22%  Similarity=0.197  Sum_probs=141.7

Q ss_pred             CcccEEECCCCcCCCCCC----ccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC-------CCChhh
Q 039997            2 SALEILDLRDNYFSGRIP----YGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG-------SIPSCI   70 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~-------~~p~~l   70 (333)
                      ++|++|+|++|.+++..+    ..+..+++|++|++++|+++++.+..|..+++|++||+++|++.+       ..+..+
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            578999999999997555    345678999999999999998999999999999999999999753       122456


Q ss_pred             hccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCC
Q 039997           71 TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSS  150 (333)
Q Consensus        71 ~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  150 (333)
                      .+|+.|++++|.+..+.......                                         +  ..+++|++|+|++
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l-----------------------------------------~--~~l~~L~~L~Ls~  233 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAAL-----------------------------------------A--AAGVQPHSLDLSH  233 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHH-----------------------------------------H--HHTCCCSSEECTT
T ss_pred             CCCCEEECCCCCCCchHHHHHHH-----------------------------------------H--hcCCCCCEEECCC
Confidence            67888888888775422110000                                         0  0157899999999


Q ss_pred             CcccccCCccccCc---cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997          151 NELTGDISSEIGDL---RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       151 n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  226 (333)
                      |++++..|..+..+   ++|++|+|++|+++.+ |..+  .++|+.|++++|+++++ |.+..+++|+.|++++|+++.
T Consensus       234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred             CCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence            99998878777766   6999999999999954 5444  27999999999999986 446788999999999999873

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=1.7e-20  Score=167.06  Aligned_cols=236  Identities=17%  Similarity=0.165  Sum_probs=165.9

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---cccccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~   79 (333)
                      +++.++++++.++ .+|..+.  +++++|++++|+++++.+..|..+++|++|++++|++++..|..+.   +|+.|++.
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            6889999999998 5777665  6899999999999988888999999999999999999977777665   56677778


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc---chh--hhhccccEEECCCCccc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES---YKG--VILEYMAGLDLSSNELT  154 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~l~~L~~L~Ls~n~l~  154 (333)
                      +|.+..++.... ..+.......+...  .+....+..+. ......+..+....   .+.  ..+++|+.|++++|.++
T Consensus       109 ~n~l~~l~~~~~-~~L~~L~l~~n~l~--~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLKELPEKMP-KTLQELRVHENEIT--KVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCSBCCSSCC-TTCCEEECCSSCCC--BBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCCccChhhc-ccccEEECCCCccc--ccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            887776543322 11111111111110  00000001111 11222233333221   111  11678999999999988


Q ss_pred             ccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997          155 GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ  233 (333)
Q Consensus       155 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~  233 (333)
                      ......+   ++|+.|++++|++++..+..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++........
T Consensus       185 ~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~  261 (330)
T 1xku_A          185 TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD  261 (330)
T ss_dssp             SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred             cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence            5443332   789999999999998888899999999999999999998887 888999999999999999855444556


Q ss_pred             ccccCccccCCCCCC
Q 039997          234 FSTFDESSYRGNLNL  248 (333)
Q Consensus       234 ~~~l~~~~~~~n~~~  248 (333)
                      ...++.+++.+|...
T Consensus       262 l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          262 HKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CSSCCEEECCSSCCC
T ss_pred             CCCcCEEECCCCcCC
Confidence            677788888888654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=1.5e-20  Score=167.72  Aligned_cols=237  Identities=17%  Similarity=0.140  Sum_probs=166.1

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---cccccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~   79 (333)
                      +++.++++++.++ .+|..+.  ++|++|++++|.++++.|+.|.++++|++|++++|++++..|..+.   +|+.|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5899999999998 6777664  7999999999999988899999999999999999999977777664   56677778


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc---chhhh-hccccEEECCCCcccc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES---YKGVI-LEYMAGLDLSSNELTG  155 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-l~~L~~L~Ls~n~l~~  155 (333)
                      +|.+..++.... ..+.......+...  .+....+..+.. .....+..+.+..   .++.. ..+|+.|++++|++++
T Consensus       111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~--~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP-SSLVELRIHDNRIR--KVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC-TTCCEEECCSSCCC--CCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc-ccCCEEECCCCccC--ccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence            887776544332 11111111111111  111111111111 1222223333221   01000 1167888888888875


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccc
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQF  234 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~  234 (333)
                      ++.. +.  ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++........+
T Consensus       187 l~~~-~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l  263 (332)
T 2ft3_A          187 IPKD-LP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL  263 (332)
T ss_dssp             CCSS-SC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred             cCcc-cc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence            4333 22  689999999999998888889999999999999999999888 8899999999999999998554444567


Q ss_pred             cccCccccCCCCCCC
Q 039997          235 STFDESSYRGNLNLC  249 (333)
Q Consensus       235 ~~l~~~~~~~n~~~c  249 (333)
                      ..++.+++.+|....
T Consensus       264 ~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          264 KLLQVVYLHTNNITK  278 (332)
T ss_dssp             TTCCEEECCSSCCCB
T ss_pred             ccCCEEECCCCCCCc
Confidence            778888888887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=4e-21  Score=161.25  Aligned_cols=136  Identities=23%  Similarity=0.247  Sum_probs=123.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|+|++|.|+++.+..|.++++|++|+|++|+|+++.|+.|.++++|++|+|++|+++...+..|..         
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~---------  102 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG---------  102 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT---------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC---------
Confidence            57999999999999888889999999999999999999999999999999999999999999544433433         


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                                                                                +++|+.|+|++|++++..+..|
T Consensus       103 ----------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~  124 (220)
T 2v9t_B          103 ----------------------------------------------------------LFSLQLLLLNANKINCLRVDAF  124 (220)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred             ----------------------------------------------------------CCCCCEEECCCCCCCEeCHHHc
Confidence                                                                      4678999999999999999999


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCC
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ  204 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  204 (333)
                      .++++|+.|+|++|++++..+..|..+++|+.|++++|.+...
T Consensus       125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            9999999999999999999888999999999999999998753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=3.7e-22  Score=187.08  Aligned_cols=192  Identities=21%  Similarity=0.197  Sum_probs=150.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|+|++|.+++..|  |.++++|++|+|++|.|+++.+     .++|+.|++++|.+++..+..+.+|+.|++.+|
T Consensus        58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N  130 (487)
T 3oja_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKKNIYLANN  130 (487)
T ss_dssp             TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEECCCSSCEEEECCSS
T ss_pred             CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCccccCCCCEEECCCC
Confidence            689999999999996655  9999999999999999986654     389999999999999877778889999999999


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch-h---hhhccccEEECCCCcccccC
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK-G---VILEYMAGLDLSSNELTGDI  157 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~l~~L~~L~Ls~n~l~~~~  157 (333)
                      .+.++.......        ..                 .+....+..+.+.... .   ..+++|+.|+|++|.+++..
T Consensus       131 ~l~~~~~~~~~~--------l~-----------------~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          131 KITMLRDLDEGC--------RS-----------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             CCCSGGGBCGGG--------GS-----------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCCCCCchhhcC--------CC-----------------CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            988753211100        00                 1111222222222111 1   12588999999999999774


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      +  ...+++|+.|+|++|.+++.++. +..+++|+.|++++|.++++++.+..+++|+.+++++|++.|.+
T Consensus       186 ~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             c--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            4  33589999999999999976554 88999999999999999987778889999999999999999664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=184.58  Aligned_cols=181  Identities=20%  Similarity=0.232  Sum_probs=144.4

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC--CCChhh---hccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG--SIPSCI---TNLLFW   76 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~--~~p~~l---~~L~~L   76 (333)
                      .+|+.|++++|.+....  .+..+++|++|++++|++++..|..+..+++|+.|++++|++++  .+|..+   .+|+.|
T Consensus       302 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L  379 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL  379 (520)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred             CceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence            46899999999987432  23678999999999999998888999999999999999999985  334444   456677


Q ss_pred             cccCCcccc-ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997           77 KVGNGDLYG-LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG  155 (333)
Q Consensus        77 ~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  155 (333)
                      ++++|.+.+ ++....                                            .  .+++|+.|++++|++++
T Consensus       380 ~Ls~N~l~~~l~~~~~--------------------------------------------~--~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDC--------------------------------------------S--WTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             ECCSSCCBCCGGGCSC--------------------------------------------C--CCTTCCEEECCSSCCCG
T ss_pred             ECCCCcCCcccccchh--------------------------------------------c--cCccCCEEECcCCCCCc
Confidence            777777665 221100                                            0  05779999999999987


Q ss_pred             cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997          156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ  233 (333)
Q Consensus       156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~  233 (333)
                      ..|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++.+++ .+..+++|+.+++++|+++|.|+..+.
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            7766554  79999999999999 555556699999999999999998777 599999999999999999999975443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=6.6e-22  Score=175.35  Aligned_cols=236  Identities=20%  Similarity=0.195  Sum_probs=146.9

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCC
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNG   81 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n   81 (333)
                      +++..+++.+.+....+..+..+++|++|+|++|+++++.|..|..+++|++|++++|.+++..+ ..+.+|+.|++++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence            46677888888875555667778899999999999999999999999999999999999985443 34567778888888


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccccCC
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      .+.++........+.   ...+.......  ..+    .......+..+.+......   .+++|+.|++++|.+++..+
T Consensus        91 ~l~~l~~~~~L~~L~---l~~n~l~~~~~--~~~----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           91 YVQELLVGPSIETLH---AANNNISRVSC--SRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             EEEEEEECTTCCEEE---CCSSCCSEEEE--CCC----SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             ccccccCCCCcCEEE---CCCCccCCcCc--ccc----CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            887755331111111   11111100000  000    1122233333333333221   14566777777777766555


Q ss_pred             ccc-cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997          159 SEI-GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF  237 (333)
Q Consensus       159 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l  237 (333)
                      ..+ ..+++|+.|++++|.+++..+  ...+++|+.|++++|.++++++.+..+++|+.|++++|.++...+....+..+
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L  239 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence            554 356677777777777664422  22366677777777777766556666677777777777776554444455566


Q ss_pred             CccccCCCCCCC
Q 039997          238 DESSYRGNLNLC  249 (333)
Q Consensus       238 ~~~~~~~n~~~c  249 (333)
                      +.+++.+|+..|
T Consensus       240 ~~L~l~~N~~~~  251 (317)
T 3o53_A          240 EHFDLRGNGFHC  251 (317)
T ss_dssp             CEEECTTCCCBH
T ss_pred             CEEEccCCCccC
Confidence            666677777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=8.7e-21  Score=167.43  Aligned_cols=170  Identities=18%  Similarity=0.269  Sum_probs=126.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~   80 (333)
                      ++|++|+|++|.+++. +. +.++++|++|++++|+++++  +.+..+++|+.|++++|++++..+ ..+.+|+.|++.+
T Consensus        63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence            6899999999999954 44 99999999999999999865  368999999999999999985322 2345677788888


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCCc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      |.+.++.....          ......+.++.                 +.+..++. ..+++|+.|++++|++++..+ 
T Consensus       139 n~l~~~~~l~~----------l~~L~~L~l~~-----------------n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          139 NQITNISPLAG----------LTNLQYLSIGN-----------------AQVSDLTPLANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             SCCCCCGGGGG----------CTTCCEEECCS-----------------SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CccCcCccccC----------CCCccEEEccC-----------------CcCCCChhhcCCCCCCEEECCCCccCcChh-
Confidence            88776543111          11111112222                 22221111 116889999999999997654 


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  206 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  206 (333)
                       +..+++|+.|++++|++++..+  +..+++|+.|++++|.+++.+.
T Consensus       191 -l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             -GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             -hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence             8899999999999999997664  8899999999999999987544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=1.6e-21  Score=160.17  Aligned_cols=113  Identities=22%  Similarity=0.344  Sum_probs=71.5

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV  219 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l  219 (333)
                      ++|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|++++|++++..+ .+..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            445556666666666666666666666666666666666666666667777777777777776666 6777777888888


Q ss_pred             ccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997          220 SYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI  253 (333)
Q Consensus       220 ~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  253 (333)
                      ++|+++|.|+..+...++......++...|+.|.
T Consensus       134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            8888888776443333333333344444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2e-20  Score=185.22  Aligned_cols=240  Identities=15%  Similarity=0.145  Sum_probs=165.0

Q ss_pred             CcccEEECCCCcCCCCCCc--cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---c-ccc
Q 039997            2 SALEILDLRDNYFSGRIPY--GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---N-LLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~-L~~   75 (333)
                      ++|++|+|++|.++ .+|.  .|.++++|++|+|++|+++ .+| .|..+++|+.|++++|+++ .+|..+.   + |+.
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCE
Confidence            48999999999999 7888  8999999999999999999 666 8999999999999999998 7776664   3 666


Q ss_pred             ccccCCccccccccCCCCc---ccccccccCCCCC--cCCCCCCCCc-cccceEEEEeeccccccchhhh---hccccEE
Q 039997           76 WKVGNGDLYGLVERGRDFD---LEDIYNYYNSTVP--LSLDRSDTRT-LDTQVVVNFMTKNRYESYKGVI---LEYMAGL  146 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---l~~L~~L  146 (333)
                      |++++|.+..++.......   +.......+....  ..+. ..... ....+....+..+.+..++...   +++|+.|
T Consensus       624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI  702 (876)
T ss_dssp             EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred             EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch-hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence            7888888876554333221   1111111111110  0000 00000 0113444555666666665443   5788889


Q ss_pred             ECCCCcccccCCccccCc-------cccceeecccccCCCCchHHHh--CCCCCCEEeccCCcccCCCCCCCCCCCCCEE
Q 039997          147 DLSSNELTGDISSEIGDL-------RNIHGLNLSHNFLSGSIPESFS--NLKMIESLDLSHNKLNGQIPQLTELHSLSKF  217 (333)
Q Consensus       147 ~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L  217 (333)
                      +|++|+++.+++..+...       ++|+.|+|++|+++ .+|..+.  .+++|+.|++++|.+++++..+..+++|+.|
T Consensus       703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF  781 (876)
T ss_dssp             ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEE
T ss_pred             ECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEE
Confidence            999888885555555433       38888899988888 4556665  8888888999988888864477788888888


Q ss_pred             Eccc------CcCcccCCCC-ccccccCccccCCCCC
Q 039997          218 DVSY------NNLSCPIPDK-EQFSTFDESSYRGNLN  247 (333)
Q Consensus       218 ~l~~------N~l~~~~~~~-~~~~~l~~~~~~~n~~  247 (333)
                      ++++      |.+.+..|.. ..+..++.+++.+|..
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            8876      5566555543 4566677777777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=2.6e-21  Score=158.91  Aligned_cols=179  Identities=23%  Similarity=0.313  Sum_probs=137.6

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccch-hhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL   83 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~   83 (333)
                      +++++++|.++ .+|..+..  ++++|++++|+|+++.+. .|..+++|++|++++|++++..|..|..           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            68999999998 67776653  999999999999987775 5899999999999999999777777655           


Q ss_pred             ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997           84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD  163 (333)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  163 (333)
                                                                              +++|+.|+|++|++++..+..|.+
T Consensus        77 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~  100 (192)
T 1w8a_A           77 --------------------------------------------------------ASHIQELQLGENKIKEISNKMFLG  100 (192)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTT
T ss_pred             --------------------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence                                                                    366889999999999999999999


Q ss_pred             ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCcccCCCCccccccCccc
Q 039997          164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS  241 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~  241 (333)
                      +++|+.|+|++|++++..|..|..+++|+.|++++|.+.+..+  .+..  .++...+.++...|.-|..  +....-.+
T Consensus       101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l~~  176 (192)
T 1w8a_A          101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQIKD  176 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBGGG
T ss_pred             CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCChhh
Confidence            9999999999999999889999999999999999999987544  2211  1222244556666655543  33333334


Q ss_pred             cCCCCCCCCCCCCCCC
Q 039997          242 YRGNLNLCCPPINKSC  257 (333)
Q Consensus       242 ~~~n~~~c~~~~~~~c  257 (333)
                      +..+...|..+....|
T Consensus       177 l~~~~~~C~~~~~~~c  192 (192)
T 1w8a_A          177 LPHSEFKCSSENSEGC  192 (192)
T ss_dssp             SCTTTCCCCCC---CC
T ss_pred             CcHhhcCcCCCCCCCC
Confidence            5556666665544444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=1.6e-21  Score=185.45  Aligned_cols=200  Identities=19%  Similarity=0.161  Sum_probs=149.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~   78 (333)
                      ++|++|||++|.|++..|..|.++++|++|++++|+++++.|++|.++++|++||+++|++++..|..+.   +|+.|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            5799999999999988899999999999999999999999999999999999999999999977666565   4556777


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccc-cc-----cchhhhhccccEEECCCCc
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR-YE-----SYKGVILEYMAGLDLSSNE  152 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~L~~L~Ls~n~  152 (333)
                      ++|.+..+.......                       .+... ....+..+. ..     .+.+  +++|++|++++|+
T Consensus       106 s~n~l~~~~~~~~~~-----------------------~l~~L-~~L~L~~n~~~~~~~~~~~~~--l~~L~~L~L~~n~  159 (549)
T 2z81_A          106 MGNPYQTLGVTSLFP-----------------------NLTNL-QTLRIGNVETFSEIRRIDFAG--LTSLNELEIKALS  159 (549)
T ss_dssp             TTCCCSSSCSSCSCT-----------------------TCTTC-CEEEEEESSSCCEECTTTTTT--CCEEEEEEEEETT
T ss_pred             CCCcccccchhhhhh-----------------------ccCCc-cEEECCCCccccccCHhhhhc--ccccCeeeccCCc
Confidence            777766431110000                       00000 111111111 11     1222  6788999999999


Q ss_pred             ccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC--C--CCCCCCCCCEEEcccCcCccc
Q 039997          153 LTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI--P--QLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~--~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      +++..|..+..+++|++|++++|.+....+..++.+++|+.|++++|.+++..  +  .....++|+.+++++|.+++.
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE  238 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred             ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence            99888889999999999999999988554445567899999999999998753  2  345577899999999988753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=8.4e-20  Score=180.75  Aligned_cols=238  Identities=19%  Similarity=0.180  Sum_probs=119.8

Q ss_pred             CcccEEECCCCc-CCC-CCCccccCCc-------ccceeeccccccccccch--hhcCCCCCCEEeCCCCcCCCCCChhh
Q 039997            2 SALEILDLRDNY-FSG-RIPYGINEHS-------NLRALLLKGNYLQGPIPH--QLCQLRKLSIMDLSHNRLNGSIPSCI   70 (333)
Q Consensus         2 ~~L~~L~Ls~N~-i~~-~~~~~~~~l~-------~L~~L~L~~N~i~~~~~~--~f~~L~~L~~LdLs~N~l~~~~p~~l   70 (333)
                      ++|++|+|++|. +++ .+|..+..++       +|++|+|++|+++ .+|.  .|..+++|+.|++++|+++ .+| .+
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence            456677777776 665 5565554444       6777777777776 4444  6667777777777777666 555 33


Q ss_pred             ---hccccccccCCccccccccCCCCc--ccccccccCCCCCcCCCCCCCCccc-cceEEEEeeccccccc----h----
Q 039997           71 ---TNLLFWKVGNGDLYGLVERGRDFD--LEDIYNYYNSTVPLSLDRSDTRTLD-TQVVVNFMTKNRYESY----K----  136 (333)
Q Consensus        71 ---~~L~~L~~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~----  136 (333)
                         .+|+.|++.+|.+..++.......  +.......+...  .+.. .+.... ..+....+..+.+...    +    
T Consensus       592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCch-hhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence               344455556666554332211110  111111111111  1110 000000 1122333333332111    1    


Q ss_pred             hhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCC-------CCCCEEeccCCcccCCCCCCC
Q 039997          137 GVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNL-------KMIESLDLSHNKLNGQIPQLT  209 (333)
Q Consensus       137 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~~~~~~~  209 (333)
                      .....+|+.|++++|+++.+++..+..+++|+.|+|++|+++.+++..+...       ++|+.|+|++|+++.++..+.
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~  748 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR  748 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence            0012356667777777664444445566667777777777664443333322       266777777777664444444


Q ss_pred             --CCCCCCEEEcccCcCcccCCCCccccccCccccCCC
Q 039997          210 --ELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN  245 (333)
Q Consensus       210 --~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n  245 (333)
                        .+++|+.|++++|.+++.......+..++.+++..|
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCC
T ss_pred             hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCC
Confidence              666777777777766663323334455555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=4.7e-20  Score=165.32  Aligned_cols=233  Identities=18%  Similarity=0.223  Sum_probs=131.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~   79 (333)
                      ++|++|++++|.++. + ..+.++++|++|++++|.++++.+  +..+++|+.|++++|......+.  .+.+|+.|++.
T Consensus        88 ~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~  163 (347)
T 4fmz_A           88 VKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT  163 (347)
T ss_dssp             TTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECC
T ss_pred             CcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEec
Confidence            678999999999985 3 368899999999999999986554  78899999999998865533332  23455566666


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCC
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      +|.+...........+.......+......  .  +... .......+..+....... ..+++|+.|++++|++++..+
T Consensus       164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~--~~~l-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          164 ESKVKDVTPIANLTDLYSLSLNYNQIEDIS--P--LASL-TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECTTSCCCCCG--G--GGGC-TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCcCCchhhccCCCCCEEEccCCcccccc--c--ccCC-CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc
Confidence            666655433111111111111111111000  0  0111 111112222222222221 115567777777777665443


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCC-cccccc
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK-EQFSTF  237 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l  237 (333)
                        +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.++...+.. ..+..+
T Consensus       239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence              66666777777777766643  3466666677777777766654 44556666677777766665443321 234455


Q ss_pred             CccccCCCCCC
Q 039997          238 DESSYRGNLNL  248 (333)
Q Consensus       238 ~~~~~~~n~~~  248 (333)
                      +.+++.+|+..
T Consensus       314 ~~L~L~~n~l~  324 (347)
T 4fmz_A          314 TTLFLSQNHIT  324 (347)
T ss_dssp             SEEECCSSSCC
T ss_pred             CEEEccCCccc
Confidence            55566666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=158.53  Aligned_cols=138  Identities=21%  Similarity=0.190  Sum_probs=124.1

Q ss_pred             CcccEEECCCCcCCCCCC-ccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIP-YGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~   80 (333)
                      ..+++|+|++|.|++..+ ..|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|++++..+..|..        
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------  103 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG--------  103 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT--------
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC--------
Confidence            467899999999997754 46899999999999999999999999999999999999999999666655544        


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE  160 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  160 (333)
                                                                                 +++|++|+|++|++++..|..
T Consensus       104 -----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~  124 (220)
T 2v70_A          104 -----------------------------------------------------------LESLKTLMLRSNRITCVGNDS  124 (220)
T ss_dssp             -----------------------------------------------------------CSSCCEEECTTSCCCCBCTTS
T ss_pred             -----------------------------------------------------------CcCCCEEECCCCcCCeECHhH
Confidence                                                                       467889999999999999999


Q ss_pred             ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997          161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  206 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  206 (333)
                      |.++++|+.|+|++|++++..|..|..+++|+.|++++|.+.+..+
T Consensus       125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999999999998889999999999999999999986544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=5.3e-21  Score=181.87  Aligned_cols=201  Identities=18%  Similarity=0.163  Sum_probs=147.7

Q ss_pred             CcccEEECCCCcCCCCCCccc-cCCcccceeeccccccccccch---hhcCCCCCCEEeCCCCcCCCCC-----Chhhhc
Q 039997            2 SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPH---QLCQLRKLSIMDLSHNRLNGSI-----PSCITN   72 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~---~f~~L~~L~~LdLs~N~l~~~~-----p~~l~~   72 (333)
                      ++|++|++++|.++ .+|..+ +++++|++|++++|++++..|.   .+..+++|+.|++++|++++..     ...+.+
T Consensus       310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence            46788888888887 566655 5788999999999998866543   3678889999999999887432     234456


Q ss_pred             cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc
Q 039997           73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE  152 (333)
Q Consensus        73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  152 (333)
                      |+.|++++|.+..++.....         .                 .......+..+.+..+++...++|++|++++|+
T Consensus       389 L~~L~Ls~N~l~~lp~~~~~---------~-----------------~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~  442 (549)
T 2z81_A          389 LTSLDISRNTFHPMPDSCQW---------P-----------------EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN  442 (549)
T ss_dssp             CCEEECTTCCCCCCCSCCCC---------C-----------------TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSC
T ss_pred             CCEEECCCCCCccCChhhcc---------c-----------------ccccEEECCCCCcccccchhcCCceEEECCCCC
Confidence            77777788877654332110         0                 011122233333444444445789999999999


Q ss_pred             ccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC
Q 039997          153 LTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK  231 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~  231 (333)
                      +++..    ..+++|+.|+|++|+++.++ . ...+++|+.|++++|++++.++ .+..+++|+.+++++|++.|.|+..
T Consensus       443 l~~~~----~~l~~L~~L~Ls~N~l~~ip-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          443 LDSFS----LFLPRLQELYISRNKLKTLP-D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             CSCCC----CCCTTCCEEECCSSCCSSCC-C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             hhhhc----ccCChhcEEECCCCccCcCC-C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            98643    57899999999999999554 3 4678999999999999999888 7899999999999999999999855


Q ss_pred             cccc
Q 039997          232 EQFS  235 (333)
Q Consensus       232 ~~~~  235 (333)
                      .++.
T Consensus       517 ~~l~  520 (549)
T 2z81_A          517 DYLS  520 (549)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=9.2e-21  Score=161.07  Aligned_cols=172  Identities=13%  Similarity=0.147  Sum_probs=140.2

Q ss_pred             CcccEEECCCCc-CCCCCCccccCCcccceeeccc-cccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhccc---
Q 039997            2 SALEILDLRDNY-FSGRIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLL---   74 (333)
Q Consensus         2 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~---   74 (333)
                      ++|++|++++|. ++.+.+..|.++++|++|++++ |+++++.+..|.++++|++|++++|++++ +|.  .+.+++   
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~  133 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFF  133 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccccccccccccc
Confidence            679999999997 9877777999999999999999 99998888999999999999999999985 564  233343   


Q ss_pred             cccccCC-ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhcccc-EEECCCCc
Q 039997           75 FWKVGNG-DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMA-GLDLSSNE  152 (333)
Q Consensus        75 ~L~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~  152 (333)
                      .|++.+| .+..+....                                            +.+  +++|+ .|++++|+
T Consensus       134 ~L~l~~N~~l~~i~~~~--------------------------------------------~~~--l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNA--------------------------------------------FQG--LCNETLTLKLYNNG  167 (239)
T ss_dssp             EEEEESCTTCCEECTTT--------------------------------------------TTT--TBSSEEEEECCSCC
T ss_pred             EEECCCCcchhhcCccc--------------------------------------------ccc--hhcceeEEEcCCCC
Confidence            5556666 554422110                                            001  57899 99999999


Q ss_pred             ccccCCccccCccccceeeccccc-CCCCchHHHhCC-CCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCc
Q 039997          153 LTGDISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNL-KMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNN  223 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~  223 (333)
                      ++.+.+..|.. ++|+.|++++|+ ++++.+..|..+ ++|+.|++++|+++.+++.  .+++|+.|+++++.
T Consensus       168 l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            99777777777 899999999995 998888889999 9999999999999977664  57789999998763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=7.7e-21  Score=181.49  Aligned_cols=176  Identities=22%  Similarity=0.179  Sum_probs=130.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---cccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---LLFWKV   78 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L~~L~~   78 (333)
                      +++++|||++|.+++..+..|.++++|++|+|++|+++++.+++|.++++|++|++++|+++...|..|..   |+.|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57889999999999888888999999999999999999888888999999999999999988666665544   445555


Q ss_pred             cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccccc-C
Q 039997           79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGD-I  157 (333)
Q Consensus        79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~  157 (333)
                      .+|.+..+....                                            +.  .+.+|++|++++|.+++. .
T Consensus       108 ~~n~l~~l~~~~--------------------------------------------~~--~l~~L~~L~L~~n~l~~~~l  141 (570)
T 2z63_A          108 VETNLASLENFP--------------------------------------------IG--HLKTLKELNVAHNLIQSFKL  141 (570)
T ss_dssp             TTSCCCCSTTCS--------------------------------------------CT--TCTTCCEEECCSSCCCCCCC
T ss_pred             cccccccCCCcc--------------------------------------------cc--ccccccEEecCCCccceecC
Confidence            555544422100                                            00  056677788888877763 4


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCC----CEEeccCCcccCCCC-CCCCCCCCCEEEcccCcC
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMI----ESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNL  224 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l  224 (333)
                      |..|.++++|++|++++|++++..+..++.+++|    +.+++++|.+++..+ .+... +|+.+++++|..
T Consensus       142 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~  212 (570)
T 2z63_A          142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD  212 (570)
T ss_dssp             CGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred             hhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccc
Confidence            7777778888888888888777666677777777    777888888777766 44443 677888777643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=3.3e-20  Score=162.32  Aligned_cols=168  Identities=21%  Similarity=0.319  Sum_probs=135.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~   79 (333)
                      ++|++|++++|.++.. + .+..+++|++|++++|+++++.+  +..+++|+.|++++|+++. +|.  .+.+|+.|++.
T Consensus        46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECT
T ss_pred             CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECC
Confidence            4689999999999854 4 48889999999999999997666  8999999999999999984 332  23455566666


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      +|.+..+..                                              +.  .+++|+.|++++|++++.  .
T Consensus       121 ~n~i~~~~~----------------------------------------------l~--~l~~L~~L~l~~n~l~~~--~  150 (291)
T 1h6t_A          121 HNGISDING----------------------------------------------LV--HLPQLESLYLGNNKITDI--T  150 (291)
T ss_dssp             TSCCCCCGG----------------------------------------------GG--GCTTCCEEECCSSCCCCC--G
T ss_pred             CCcCCCChh----------------------------------------------hc--CCCCCCEEEccCCcCCcc--h
Confidence            666654210                                              00  057799999999999865  6


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      .+..+++|+.|++++|++++..+  +..+++|+.|++++|.++.+ +.+..+++|+.|++++|+++..
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECC
T ss_pred             hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCC
Confidence            78899999999999999997765  88999999999999999875 4588899999999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=3.8e-20  Score=156.23  Aligned_cols=136  Identities=24%  Similarity=0.269  Sum_probs=122.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|+|++|.|++..|..|.++++|++|+|++|+|+.+.+..|.++++|+.|+|++|++++..+..|..         
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~---------  110 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR---------  110 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc---------
Confidence            67999999999999888999999999999999999999888889999999999999999999555544443         


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                                                                                +++|+.|+|++|+++ ..|..+
T Consensus       111 ----------------------------------------------------------l~~L~~L~Ls~N~l~-~lp~~~  131 (229)
T 3e6j_A          111 ----------------------------------------------------------LVHLKELFMCCNKLT-ELPRGI  131 (229)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSSCCC-SCCTTG
T ss_pred             ----------------------------------------------------------chhhCeEeccCCccc-ccCccc
Confidence                                                                      467889999999999 667788


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI  205 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  205 (333)
                      ..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+..
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99999999999999999888888999999999999999998644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=155.28  Aligned_cols=120  Identities=21%  Similarity=0.242  Sum_probs=93.8

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV  219 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l  219 (333)
                      ++|+.|+|++|.++++.+..|.++++|+.|+|++|+|+++.+..|..+++|+.|+|++|.++.+++ .+..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence            567788888888888888889999999999999999998888889999999999999999998888 7889999999999


Q ss_pred             ccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 039997          220 SYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSS  268 (333)
Q Consensus       220 ~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~  268 (333)
                      ++|++.|.|...+...++......        +....|..|+...+...
T Consensus       134 ~~N~~~C~c~l~~l~~~~~~~~~~--------~~~~~C~~P~~l~g~~l  174 (193)
T 2wfh_A          134 GANPLYCDCNMQWLSDWVKSEYKE--------PGIARCAGPGEMADKLL  174 (193)
T ss_dssp             CSSCEECSGGGHHHHHHHHHSSCC--------CSCCBEEESGGGTTCBT
T ss_pred             CCCCeecCCcCHHHHHHHHhccCC--------CCCcCcCCchHHCCCCc
Confidence            999999999654333333222111        23346776666655533

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=3e-19  Score=165.90  Aligned_cols=207  Identities=21%  Similarity=0.180  Sum_probs=130.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++||+++|.+++. | .+..+++|++|++++|+++++ |  +..+++|++|++++|++++.....+.+|+.|++.+|
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCC
Confidence            5788999999999854 5 688889999999999998865 3  788899999999999888654455667778888888


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecc-ccccchhhhhccccEEECCCCcccccCCcc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKN-RYESYKGVILEYMAGLDLSSNELTGDISSE  160 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  160 (333)
                      .+.++. ......+.......+....+  +   +....... ...+..+ ....++-..+++|+.|++++|+++++ |  
T Consensus       117 ~l~~l~-~~~l~~L~~L~l~~N~l~~l--~---l~~l~~L~-~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~--  186 (457)
T 3bz5_A          117 KLTKLD-VSQNPLLTYLNCARNTLTEI--D---VSHNTQLT-ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D--  186 (457)
T ss_dssp             CCSCCC-CTTCTTCCEEECTTSCCSCC--C---CTTCTTCC-EEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C--
T ss_pred             cCCeec-CCCCCcCCEEECCCCcccee--c---cccCCcCC-EEECCCCCcccccccccCCcCCEEECCCCcccee-c--
Confidence            877652 11111111111111111111  1   11111111 1112222 11122212256777888888877764 2  


Q ss_pred             ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997          161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      +..+++|+.|++++|++++.   .++.+++|+.|++++|++++++  +..+++|+.|++++|.+++..
T Consensus       187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence            66777777777777777755   2667777777777777777743  666777777777777776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=2.4e-20  Score=153.75  Aligned_cols=150  Identities=15%  Similarity=0.251  Sum_probs=113.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|++++|.|+ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..|..+..         
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------  110 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG---------  110 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT---------
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC---------
Confidence            36778888888887 455 57778888888888887653  236777888888888888877544443332         


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                                                                                +++|++|++++|++++..+..+
T Consensus       111 ----------------------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l  132 (197)
T 4ezg_A          111 ----------------------------------------------------------LTSLTLLDISHSAHDDSILTKI  132 (197)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSSBCBGGGHHHH
T ss_pred             ----------------------------------------------------------CCCCCEEEecCCccCcHhHHHH
Confidence                                                                      4668889999999987777888


Q ss_pred             cCccccceeeccccc-CCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCc
Q 039997          162 GDLRNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~  225 (333)
                      ..+++|+.|++++|. ++.. + .+..+++|+.|++++|.+++.. .+..+++|+.|++++|++.
T Consensus       133 ~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          133 NTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             hhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            888999999999998 7644 4 5888899999999999888754 6777888999999998875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=1.8e-19  Score=168.08  Aligned_cols=81  Identities=19%  Similarity=0.320  Sum_probs=55.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~   80 (333)
                      ++|++|||++|.+++.. . +.++++|++|++++|+++++.+  +..+++|++|++++|.+++..+ ..+.+|+.|++.+
T Consensus        68 ~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~  143 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  143 (466)
T ss_dssp             TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred             cCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCC
Confidence            56788888888887543 3 7788888888888888876555  7788888888888887774322 2234455555555


Q ss_pred             Cccccc
Q 039997           81 GDLYGL   86 (333)
Q Consensus        81 n~~~~~   86 (333)
                      |.+..+
T Consensus       144 n~l~~~  149 (466)
T 1o6v_A          144 NTISDI  149 (466)
T ss_dssp             EEECCC
T ss_pred             CccCCC
Confidence            555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.82  E-value=1.8e-19  Score=161.50  Aligned_cols=212  Identities=18%  Similarity=0.273  Sum_probs=150.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~   80 (333)
                      ++|++|++++|..... +..+.++++|++|++++|.+.+..+  +..+++|+.|++++|.+....+ ..+.+++.|++.+
T Consensus       132 ~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV  208 (347)
T ss_dssp             TTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence            5789999999966533 4458899999999999999986555  8899999999999999884332 2345566777777


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE  160 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  160 (333)
                      |.+........          ......+.++.+.+.....              +  ..+++|+.|++++|.+++.  ..
T Consensus       209 n~l~~~~~~~~----------~~~L~~L~l~~n~l~~~~~--------------~--~~l~~L~~L~l~~n~l~~~--~~  260 (347)
T 4fmz_A          209 NQITDITPVAN----------MTRLNSLKIGNNKITDLSP--------------L--ANLSQLTWLEIGTNQISDI--NA  260 (347)
T ss_dssp             SCCCCCGGGGG----------CTTCCEEECCSSCCCCCGG--------------G--TTCTTCCEEECCSSCCCCC--GG
T ss_pred             CCCCCCchhhc----------CCcCCEEEccCCccCCCcc--------------h--hcCCCCCEEECCCCccCCC--hh
Confidence            77665433111          1112222222222211100              1  1167889999999988864  46


Q ss_pred             ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCc
Q 039997          161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE  239 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~  239 (333)
                      +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|++++..| ...+..++.
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~  337 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS  337 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSE
T ss_pred             HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccce
Confidence            78888999999999998865  357888899999999999887777 78888899999999999887665 556677777


Q ss_pred             cccCCCCC
Q 039997          240 SSYRGNLN  247 (333)
Q Consensus       240 ~~~~~n~~  247 (333)
                      +++.+|+.
T Consensus       338 L~l~~N~i  345 (347)
T 4fmz_A          338 ADFANQVI  345 (347)
T ss_dssp             ESSSCC--
T ss_pred             eehhhhcc
Confidence            77777753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=1.3e-19  Score=168.91  Aligned_cols=210  Identities=22%  Similarity=0.274  Sum_probs=149.6

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~   79 (333)
                      ++|++|++++|.+++.  ..+.++++|++|++++|++++..|  +..+++|+.|++++|+++.. +  ..+.+|+.|++.
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLA  251 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECC
Confidence            5799999999999853  358899999999999999987766  77899999999999998843 2  234567778888


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCC
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      +|.+.+.......          .....+.++.+.                 +...+. ..+++|+.|++++|++++..+
T Consensus       252 ~n~l~~~~~~~~l----------~~L~~L~l~~n~-----------------l~~~~~~~~l~~L~~L~L~~n~l~~~~~  304 (466)
T 1o6v_A          252 NNQISNLAPLSGL----------TKLTELKLGANQ-----------------ISNISPLAGLTALTNLELNENQLEDISP  304 (466)
T ss_dssp             SSCCCCCGGGTTC----------TTCSEEECCSSC-----------------CCCCGGGTTCTTCSEEECCSSCCSCCGG
T ss_pred             CCccccchhhhcC----------CCCCEEECCCCc-----------------cCccccccCCCccCeEEcCCCcccCchh
Confidence            8877664331111          111111111111                 111111 115778888888888886554


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccC
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFD  238 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~  238 (333)
                        +..+++|+.|++++|++++..|  +..+++|+.|++++|.+++. +.+..+++|+.|++++|++++..| ...+..++
T Consensus       305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~  378 (466)
T 1o6v_A          305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRIT  378 (466)
T ss_dssp             --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCC
T ss_pred             --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCC
Confidence              6788888888888888887665  67888888888888888875 567778888888888888887665 45566667


Q ss_pred             ccccCCCCCCC
Q 039997          239 ESSYRGNLNLC  249 (333)
Q Consensus       239 ~~~~~~n~~~c  249 (333)
                      .+.+.+|++..
T Consensus       379 ~L~l~~n~~~~  389 (466)
T 1o6v_A          379 QLGLNDQAWTN  389 (466)
T ss_dssp             EEECCCEEEEC
T ss_pred             EEeccCCcccC
Confidence            77777776543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=8.8e-19  Score=162.78  Aligned_cols=225  Identities=19%  Similarity=0.168  Sum_probs=142.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|+|++|.|++. |  ++.+++|++|++++|+++++ +  +..+++|++|++++|++++.....+.+|+.|++.+|
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN  137 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence            6799999999999964 4  88999999999999999976 3  889999999999999998654455677888888888


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                      .+.++. ......+.......+... ..+   .+..+ .......+..+.+..++-..+++|+.|++++|++++.   .+
T Consensus       138 ~l~~l~-l~~l~~L~~L~l~~n~~~-~~~---~~~~l-~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l  208 (457)
T 3bz5_A          138 TLTEID-VSHNTQLTELDCHLNKKI-TKL---DVTPQ-TQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DL  208 (457)
T ss_dssp             CCSCCC-CTTCTTCCEEECTTCSCC-CCC---CCTTC-TTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CC
T ss_pred             ccceec-cccCCcCCEEECCCCCcc-ccc---ccccC-CcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---cc
Confidence            887752 111111111111111000 000   11111 1122233344444444323367888888888888865   37


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC-------CCCEEEcccCcCcccCCCCcc
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH-------SLSKFDVSYNNLSCPIPDKEQ  233 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~-------~L~~L~l~~N~l~~~~~~~~~  233 (333)
                      ..+++|+.|++++|+++++ |  ++.+++|+.|++++|.+++.++ .+..+.       +|+.+++++|.+.+..|. ..
T Consensus       209 ~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~  284 (457)
T 3bz5_A          209 NQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EG  284 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TT
T ss_pred             ccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cc
Confidence            7888888888888888874 4  7788888888888888887655 443332       344444554544333321 12


Q ss_pred             ccccCccccCCC
Q 039997          234 FSTFDESSYRGN  245 (333)
Q Consensus       234 ~~~l~~~~~~~n  245 (333)
                      +..++.+++.+|
T Consensus       285 l~~L~~L~Ls~n  296 (457)
T 3bz5_A          285 CRKIKELDVTHN  296 (457)
T ss_dssp             CTTCCCCCCTTC
T ss_pred             cccCCEEECCCC
Confidence            233444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=2.2e-19  Score=171.86  Aligned_cols=168  Identities=20%  Similarity=0.324  Sum_probs=136.5

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~   79 (333)
                      ++|+.|++++|.|.. ++ .+..+++|+.|+|++|+++++.+  +..+++|+.|+|++|.+.+ +|  ..+.+|+.|+++
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLE  117 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECT
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEec
Confidence            468889999999984 44 58889999999999999987666  8899999999999999874 33  233455566666


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      +|.+..+..                                              +.  .+++|+.|+|++|.+++.  .
T Consensus       118 ~N~l~~l~~----------------------------------------------l~--~l~~L~~L~Ls~N~l~~l--~  147 (605)
T 1m9s_A          118 HNGISDING----------------------------------------------LV--HLPQLESLYLGNNKITDI--T  147 (605)
T ss_dssp             TSCCCCCGG----------------------------------------------GG--GCTTCSEEECCSSCCCCC--G
T ss_pred             CCCCCCCcc----------------------------------------------cc--CCCccCEEECCCCccCCc--h
Confidence            666554211                                              00  167899999999999976  6


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.++++ +.+..+++|+.|++++|++.+.
T Consensus       148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred             hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence            78899999999999999998766  89999999999999999976 5788899999999999998765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=4e-19  Score=153.11  Aligned_cols=167  Identities=21%  Similarity=0.204  Sum_probs=113.3

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCc
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGD   82 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~   82 (333)
                      ++.+++++|.+++. + .+..+++|++|++++|.|+.+.  .+..+++|+.|++++|++++..+ ..+.+|+.|++++|.
T Consensus        21 l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           21 AVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             HHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence            34455566666532 2 4555666666666666665332  45566666666666666653222 112233344444444


Q ss_pred             cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  162 (333)
                      +..+...                                              .   ..+|+.|++++|++++.  ..+.
T Consensus        97 l~~l~~~----------------------------------------------~---~~~L~~L~L~~N~l~~~--~~l~  125 (263)
T 1xeu_A           97 LKNLNGI----------------------------------------------P---SACLSRLFLDNNELRDT--DSLI  125 (263)
T ss_dssp             CSCCTTC----------------------------------------------C---CSSCCEEECCSSCCSBS--GGGT
T ss_pred             cCCcCcc----------------------------------------------c---cCcccEEEccCCccCCC--hhhc
Confidence            4331100                                              0   14588999999999965  3588


Q ss_pred             CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      .+++|+.|++++|++++. + .++.+++|+.|++++|.+++. +.+..+++|+.|++++|++++..
T Consensus       126 ~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence            999999999999999976 3 688999999999999999987 77888999999999999998763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.80  E-value=2.7e-19  Score=143.54  Aligned_cols=136  Identities=24%  Similarity=0.215  Sum_probs=99.1

Q ss_pred             CcccEEECCCCcCC-CCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997            2 SALEILDLRDNYFS-GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~   80 (333)
                      ++|++|++++|.++ +.+|..+.++++|++|++++|.++++  ..|..+++|++|++++|++++.+|..+..        
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK--------   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence            56788888888887 56777778888888888888888765  66777888888888888887555554433        


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC-c
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-S  159 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~  159 (333)
                                                                                 +++|+.|++++|++++... .
T Consensus        94 -----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~  114 (168)
T 2ell_A           94 -----------------------------------------------------------LPNLTHLNLSGNKLKDISTLE  114 (168)
T ss_dssp             -----------------------------------------------------------CTTCCEEECBSSSCCSSGGGG
T ss_pred             -----------------------------------------------------------CCCCCEEeccCCccCcchhHH
Confidence                                                                       3557778888888775433 6


Q ss_pred             cccCccccceeecccccCCCCch---HHHhCCCCCCEEeccCCcccCCCC
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIP  206 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~  206 (333)
                      .+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+...+.
T Consensus       115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            67777788888888888776555   467777778788777777765443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=8.6e-19  Score=166.15  Aligned_cols=180  Identities=19%  Similarity=0.226  Sum_probs=134.8

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh-ccccccccCC
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT-NLLFWKVGNG   81 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~-~L~~L~~~~n   81 (333)
                      +|+.|+|++|.|++ +|..+.  ++|++|+|++|+|+. +|   ..+++|++|++++|++++ +|. +. +|+.|++++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence            78999999999996 676553  789999999999994 45   457999999999999996 666 54 8889999999


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                      .+.+++.  ..          .....+.+                 ..+.+..++. .+++|+.|+|++|++++ .|. |
T Consensus       131 ~l~~lp~--~l----------~~L~~L~L-----------------s~N~l~~lp~-~l~~L~~L~Ls~N~L~~-lp~-l  178 (571)
T 3cvr_A          131 QLTMLPE--LP----------ALLEYINA-----------------DNNQLTMLPE-LPTSLEVLSVRNNQLTF-LPE-L  178 (571)
T ss_dssp             CCSCCCC--CC----------TTCCEEEC-----------------CSSCCSCCCC-CCTTCCEEECCSSCCSC-CCC-C
T ss_pred             cCCCCCC--cC----------ccccEEeC-----------------CCCccCcCCC-cCCCcCEEECCCCCCCC-cch-h
Confidence            8887544  10          11111112                 2222222222 25789999999999997 444 5


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCC-------CEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCC
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMI-------ESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP  229 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~  229 (333)
                      .  ++|+.|+|++|+|+.++ . +..  +|       +.|++++|.|+.+++.+..+++|+.|++++|++++..|
T Consensus       179 ~--~~L~~L~Ls~N~L~~lp-~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          179 P--ESLEALDVSTNLLESLP-A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             C--TTCCEEECCSSCCSSCC-C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             h--CCCCEEECcCCCCCchh-h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            5  89999999999999544 4 543  67       99999999999876667779999999999999987654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=4.9e-18  Score=162.79  Aligned_cols=79  Identities=24%  Similarity=0.092  Sum_probs=42.6

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS  220 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~  220 (333)
                      ++|+.|++++|++++++    ..+++|+.|+|++|+|+.+++    .+++|+.|++++|.++.+++.+..+++|+.|+++
T Consensus       221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            44555555555555322    233555666666666553322    3455666666666665443355556666666666


Q ss_pred             cCcCccc
Q 039997          221 YNNLSCP  227 (333)
Q Consensus       221 ~N~l~~~  227 (333)
                      +|++++.
T Consensus       293 ~N~l~~~  299 (622)
T 3g06_A          293 GNPLSER  299 (622)
T ss_dssp             SCCCCHH
T ss_pred             CCCCCCc
Confidence            6666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.78  E-value=6.9e-19  Score=163.34  Aligned_cols=221  Identities=16%  Similarity=0.163  Sum_probs=114.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCC-------------CEEeCCCCcCCCCCCh
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKL-------------SIMDLSHNRLNGSIPS   68 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L-------------~~LdLs~N~l~~~~p~   68 (333)
                      ++|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++.+.+|             ++|++++|.++ .+|.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC
Confidence            5799999999999 5899999999999999999999999999999988865             99999999998 4565


Q ss_pred             hhhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCcc---ccceEEEEeeccccccchhh-hhcccc
Q 039997           69 CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL---DTQVVVNFMTKNRYESYKGV-ILEYMA  144 (333)
Q Consensus        69 ~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~~L~  144 (333)
                      ...+++.|++++|.+.+++....  .+          ..+.++...+..+   ........+..+.+..++.. .+++|+
T Consensus        89 ~~~~L~~L~l~~n~l~~lp~~~~--~L----------~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~  156 (454)
T 1jl5_A           89 LPPHLESLVASCNSLTELPELPQ--SL----------KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLK  156 (454)
T ss_dssp             CCTTCSEEECCSSCCSSCCCCCT--TC----------CEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             CcCCCCEEEccCCcCCccccccC--CC----------cEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCC
Confidence            66788899999998887653221  11          1111111111110   01122222222222222211 145566


Q ss_pred             EEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcC
Q 039997          145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL  224 (333)
Q Consensus       145 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l  224 (333)
                      +|++++|++++ .|..   .++|+.|++++|++++. | .++.+++|+.|++++|.+++++...   ++|+.|++++|.+
T Consensus       157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l  227 (454)
T 1jl5_A          157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNIL  227 (454)
T ss_dssp             EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCC
T ss_pred             EEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcC
Confidence            66666666654 2222   23566666666666643 3 3566666666666666666533321   3566666666666


Q ss_pred             cccCCCCccccccCccccCCCC
Q 039997          225 SCPIPDKEQFSTFDESSYRGNL  246 (333)
Q Consensus       225 ~~~~~~~~~~~~l~~~~~~~n~  246 (333)
                      + ..|....+..++.+++.+|.
T Consensus       228 ~-~lp~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          228 E-ELPELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             S-SCCCCTTCTTCCEEECCSSC
T ss_pred             C-cccccCCCCCCCEEECCCCc
Confidence            6 33444445555566666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=9.1e-19  Score=166.01  Aligned_cols=165  Identities=24%  Similarity=0.283  Sum_probs=121.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|+|++|.|+ .+|   ..+++|++|++++|+|++ +|. |.+  +|++|++++|++++ +|..+.+|+.|++++|
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCC
Confidence            57999999999999 577   457899999999999997 444 655  99999999999996 5557788999999999


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                      .+.+++...            .....+.                 +..+.+..++. ..++|+.|+|++|+|+.+ |. |
T Consensus       151 ~l~~lp~~l------------~~L~~L~-----------------Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~l-p~-~  198 (571)
T 3cvr_A          151 QLTMLPELP------------TSLEVLS-----------------VRNNQLTFLPE-LPESLEALDVSTNLLESL-PA-V  198 (571)
T ss_dssp             CCSCCCCCC------------TTCCEEE-----------------CCSSCCSCCCC-CCTTCCEEECCSSCCSSC-CC-C
T ss_pred             ccCcCCCcC------------CCcCEEE-----------------CCCCCCCCcch-hhCCCCEEECcCCCCCch-hh-H
Confidence            988754310            1111112                 22222222222 126799999999999944 44 5


Q ss_pred             cCcccc-------ceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCC
Q 039997          162 GDLRNI-------HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTE  210 (333)
Q Consensus       162 ~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~  210 (333)
                      ..  +|       +.|+|++|+|+. +|..+..+++|+.|++++|.+++..| .+..
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            54  67       999999999995 55666679999999999999988665 4443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=2.3e-18  Score=154.56  Aligned_cols=180  Identities=16%  Similarity=0.089  Sum_probs=101.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccccccc-ccchhhcCCCCCCE-EeCCCCcCCCCCChhhh---ccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSI-MDLSHNRLNGSIPSCIT---NLLFW   76 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~f~~L~~L~~-LdLs~N~l~~~~p~~l~---~L~~L   76 (333)
                      +++++|+|++|.|+.+.+.+|.++++|++|+|++|++.+ +.+++|.++++++. ++++.|+++...|..|.   +|+.|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            467888888888886556678888888888888888754 44567788887765 55666888766565554   44555


Q ss_pred             cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh----hhccccEEECCCCc
Q 039997           77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV----ILEYMAGLDLSSNE  152 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~Ls~n~  152 (333)
                      ++.+|.+..+............                        ............++..    ....++.|++++|+
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~------------------------~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKV------------------------LLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCE------------------------EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccccccccCCchhhcccchhh------------------------hhhhccccccccccccchhhcchhhhhhcccccc
Confidence            6666666554332221111110                        0111111111111110    01235556666666


Q ss_pred             ccccCCccccCccccceeecc-cccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997          153 LTGDISSEIGDLRNIHGLNLS-HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  206 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  206 (333)
                      |+.+.+..|.. .+|+.++++ +|.++.+++++|+.+++|+.||+++|+++.+++
T Consensus       166 i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          166 IQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             CCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             ccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            66554444433 456666665 355555555556666666666666666665544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.77  E-value=8.3e-19  Score=137.79  Aligned_cols=128  Identities=23%  Similarity=0.242  Sum_probs=97.0

Q ss_pred             CcccEEECCCCcCC-CCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997            2 SALEILDLRDNYFS-GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~   80 (333)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|+++++  ..|..+++|++|++++|.+++.+|..+..        
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK--------   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence            56788888888887 66777788888888888888888766  66788888888888888887555554433        


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccccc-CCc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGD-ISS  159 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~  159 (333)
                                                                                 +++|++|++++|.+++. .+.
T Consensus        87 -----------------------------------------------------------l~~L~~L~ls~N~i~~~~~~~  107 (149)
T 2je0_A           87 -----------------------------------------------------------CPNLTHLNLSGNKIKDLSTIE  107 (149)
T ss_dssp             -----------------------------------------------------------CTTCCEEECTTSCCCSHHHHG
T ss_pred             -----------------------------------------------------------CCCCCEEECCCCcCCChHHHH
Confidence                                                                       35577788888888764 236


Q ss_pred             cccCccccceeecccccCCCCch---HHHhCCCCCCEEeccC
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSH  198 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~  198 (333)
                      .+..+++|+.|++++|.+++..+   ..+..+++|+.||+++
T Consensus       108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            77788888888888888886655   5677788888887753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=1e-17  Score=160.53  Aligned_cols=218  Identities=20%  Similarity=0.121  Sum_probs=141.3

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++|++|||++|.|+ .+|.   .+++|++|++++|+++++.+    .+++|+.|++++|+++ .+|..+.+|+.|++++|
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~l~~L~~L~Ls~N  151 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDN  151 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred             CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCCCCCCCEEECcCC
Confidence            45666666666666 3443   45667777777777764433    4567777777777776 45666677777777777


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                      .+.+++.....  +.......+....  +.     .....+....+..+.+..++.. +++|+.|++++|.++.+. .  
T Consensus       152 ~l~~l~~~~~~--L~~L~L~~N~l~~--l~-----~~~~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~-~--  218 (622)
T 3g06_A          152 QLASLPALPSE--LCKLWAYNNQLTS--LP-----MLPSGLQELSVSDNQLASLPTL-PSELYKLWAYNNRLTSLP-A--  218 (622)
T ss_dssp             CCSCCCCCCTT--CCEEECCSSCCSC--CC-----CCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSSCC-C--
T ss_pred             cCCCcCCccCC--CCEEECCCCCCCC--Cc-----ccCCCCcEEECCCCCCCCCCCc-cchhhEEECcCCcccccC-C--
Confidence            77665432211  1111111111111  10     1112233344455555554432 578999999999999544 3  


Q ss_pred             cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccc
Q 039997          162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS  241 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~  241 (333)
                       .+++|+.|++++|++++++    ..+++|+.|++++|.++.+++   .+++|+.|++++|.++...+....+..+..++
T Consensus       219 -~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          219 -LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN  290 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred             -CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence             2478999999999999654    457899999999999997665   56889999999999995433334566777788


Q ss_pred             cCCCCCCC
Q 039997          242 YRGNLNLC  249 (333)
Q Consensus       242 ~~~n~~~c  249 (333)
                      +.+|+...
T Consensus       291 L~~N~l~~  298 (622)
T 3g06_A          291 LEGNPLSE  298 (622)
T ss_dssp             CCSCCCCH
T ss_pred             ecCCCCCC
Confidence            88887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.77  E-value=2e-17  Score=153.50  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=41.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~   79 (333)
                      ++|++|++++|.+++ +| .|+++++|++|++++|+++++ |..   ..+|++|++++|++++ +|.  .+.+|+.|++.
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence            456777777777764 55 477777777777777776642 221   2355555555555543 231  12333344445


Q ss_pred             CCcccc
Q 039997           80 NGDLYG   85 (333)
Q Consensus        80 ~n~~~~   85 (333)
                      +|.+.+
T Consensus       204 ~N~l~~  209 (454)
T 1jl5_A          204 NNSLKK  209 (454)
T ss_dssp             SSCCSS
T ss_pred             CCcCCc
Confidence            554444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=4.9e-18  Score=139.39  Aligned_cols=129  Identities=24%  Similarity=0.369  Sum_probs=114.5

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLY   84 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~   84 (333)
                      +++++++|.++ .+|..+.  ++|++|++++|+|+ .+|..|.++++|+.|++++|++++..+..|.+            
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------   76 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------   76 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence            57999999999 5776654  68999999999999 55689999999999999999999666655654            


Q ss_pred             cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCc
Q 039997           85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL  164 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  164 (333)
                                                                             +++|++|+|++|+++++.+..|.++
T Consensus        77 -------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~l  101 (193)
T 2wfh_A           77 -------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDGL  101 (193)
T ss_dssp             -------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             -------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCCC
Confidence                                                                   4668899999999999999999999


Q ss_pred             cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCC
Q 039997          165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ  204 (333)
Q Consensus       165 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  204 (333)
                      ++|+.|+|++|.|+.+.+..|..+++|+.|++++|.+...
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            9999999999999988888899999999999999998753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=7.7e-19  Score=151.34  Aligned_cols=169  Identities=18%  Similarity=0.159  Sum_probs=135.0

Q ss_pred             CCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhccccccccCCccccccccCCCCcccccccc
Q 039997           24 EHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNY  101 (333)
Q Consensus        24 ~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~  101 (333)
                      ++.++..+++++|.++++.  .+..+++|+.|++++|.++ .+|  ..+.+|+.|++++|.+.++.. ..          
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~-l~----------   82 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP-LK----------   82 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GT----------
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh-hc----------
Confidence            5678899999999998655  5789999999999999998 444  234567777778877766432 00          


Q ss_pred             cCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCc
Q 039997          102 YNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  181 (333)
                                                           .+++|+.|++++|++++..+..  . ++|+.|++++|++++. 
T Consensus        83 -------------------------------------~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L~L~~N~l~~~-  121 (263)
T 1xeu_A           83 -------------------------------------DLTKLEELSVNRNRLKNLNGIP--S-ACLSRLFLDNNELRDT-  121 (263)
T ss_dssp             -------------------------------------TCSSCCEEECCSSCCSCCTTCC--C-SSCCEEECCSSCCSBS-
T ss_pred             -------------------------------------cCCCCCEEECCCCccCCcCccc--c-CcccEEEccCCccCCC-
Confidence                                                 0578999999999999754432  3 8999999999999965 


Q ss_pred             hHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCC
Q 039997          182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       182 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~  250 (333)
                      + .+..+++|+.|++++|+++++ +.+..+++|+.|++++|.+++. +....+..++.+++.+|+..+.
T Consensus       122 ~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          122 D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            3 589999999999999999986 4678899999999999999877 4455667777888888876554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=8.7e-18  Score=135.91  Aligned_cols=92  Identities=24%  Similarity=0.295  Sum_probs=75.0

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV  219 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l  219 (333)
                      ++|++|++++|++++..+..|..+++|+.|++++|++++.++..+..+++|+.|++++|.++++++ .+..+++|+.|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            456677777777776666777888888888888888887777778888889999999999888777 6788899999999


Q ss_pred             ccCcCcccCCCCc
Q 039997          220 SYNNLSCPIPDKE  232 (333)
Q Consensus       220 ~~N~l~~~~~~~~  232 (333)
                      ++|++.|.|+...
T Consensus       132 ~~N~~~~~~~~l~  144 (177)
T 2o6r_A          132 HTNPWDCSCPRID  144 (177)
T ss_dssp             CSSCBCCCHHHHH
T ss_pred             cCCCeeccCccHH
Confidence            9999999887543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=1.7e-17  Score=134.12  Aligned_cols=133  Identities=22%  Similarity=0.242  Sum_probs=115.1

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL   83 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~   83 (333)
                      .+.+++++|.++ .+|..+.  ++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..           
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------   74 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-----------   74 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence            468999999998 5665544  79999999999999888888999999999999999998554444433           


Q ss_pred             ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997           84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD  163 (333)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  163 (333)
                                                                              +++|+.|++++|++++..+..|..
T Consensus        75 --------------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~   98 (177)
T 2o6r_A           75 --------------------------------------------------------LTKLTILYLHENKLQSLPNGVFDK   98 (177)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             --------------------------------------------------------CCccCEEECCCCCccccCHHHhhC
Confidence                                                                    467889999999999888888999


Q ss_pred             ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997          164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  206 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  206 (333)
                      +++|+.|++++|.+++.++..+..+++|+.|++++|.+.+..+
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999999999998888888999999999999999986543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=2.2e-17  Score=148.20  Aligned_cols=196  Identities=15%  Similarity=0.101  Sum_probs=138.7

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccc----ccc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFW----KVG   79 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L----~~~   79 (333)
                      ++++.++++++ .+|..+.  +++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| ..|.+++.+    ...
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            57889999999 6787664  689999999999998888899999999999999999865555 456666543    233


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCC-Ccccc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSS-NELTG  155 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~-n~l~~  155 (333)
                      .|.+..+.....                        ..+.. +....+..+.+..++..   ....+..|++.+ +++..
T Consensus        89 ~N~l~~l~~~~f------------------------~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           89 ANNLLYINPEAF------------------------QNLPN-LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             ETTCCEECTTSB------------------------CCCTT-CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred             CCcccccCchhh------------------------hhccc-cccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence            455554322110                        00000 11111222222222211   134577888854 67887


Q ss_pred             cCCccccCcc-ccceeecccccCCCCchHHHhCCCCCCEEeccC-CcccCCCC-CCCCCCCCCEEEcccCcCcccCC
Q 039997          156 DISSEIGDLR-NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH-NKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP  229 (333)
Q Consensus       156 ~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~  229 (333)
                      +.+..|..+. .++.|+|++|+|+.+.+..| ...+|+.+++++ |.++.+++ .|.++++|+.|++++|.++...+
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            8888888876 68999999999997666655 456799999975 78888777 78999999999999999986543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3.1e-18  Score=149.76  Aligned_cols=185  Identities=18%  Similarity=0.242  Sum_probs=144.6

Q ss_pred             EECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCcccc
Q 039997            7 LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGDLYG   85 (333)
Q Consensus         7 L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~~~~   85 (333)
                      +.++.+.+++.  ..+..+++|++|++++|.++.+ + .+..+++|+.|++++|++++..+ ..+.+|+.|++.+|.+..
T Consensus        29 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           29 DNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             HHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC
Confidence            45666777643  3456789999999999999866 3 48899999999999999985443 234556667777776655


Q ss_pred             ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCcc
Q 039997           86 LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLR  165 (333)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  165 (333)
                      +....                                                .+++|++|++++|++++.  ..+..++
T Consensus       105 ~~~l~------------------------------------------------~l~~L~~L~L~~n~i~~~--~~l~~l~  134 (291)
T 1h6t_A          105 LSSLK------------------------------------------------DLKKLKSLSLEHNGISDI--NGLVHLP  134 (291)
T ss_dssp             GGGGT------------------------------------------------TCTTCCEEECTTSCCCCC--GGGGGCT
T ss_pred             Chhhc------------------------------------------------cCCCCCEEECCCCcCCCC--hhhcCCC
Confidence            32100                                                057899999999999965  5688999


Q ss_pred             ccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCC
Q 039997          166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN  245 (333)
Q Consensus       166 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n  245 (333)
                      +|+.|++++|++++.  ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.. +....+..++.+++.+|
T Consensus       135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEE
T ss_pred             CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCC
Confidence            999999999999976  578999999999999999998776 88899999999999999864 33455666777777777


Q ss_pred             CCCC
Q 039997          246 LNLC  249 (333)
Q Consensus       246 ~~~c  249 (333)
                      +..+
T Consensus       211 ~i~~  214 (291)
T 1h6t_A          211 ECLN  214 (291)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            6443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=3.2e-20  Score=176.51  Aligned_cols=89  Identities=26%  Similarity=0.302  Sum_probs=73.4

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC-C-CCCCCCCCCEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI-P-QLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L  217 (333)
                      +++|+.|+|++|.++ ..|..++++++|+.|+|++|+|++ +| .++.+++|+.|+|++|.+++.. | .+..+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            577888888888888 667788888888888888888886 45 6888888888888888888885 5 88888888888


Q ss_pred             EcccCcCcccCCCC
Q 039997          218 DVSYNNLSCPIPDK  231 (333)
Q Consensus       218 ~l~~N~l~~~~~~~  231 (333)
                      ++++|++++.++..
T Consensus       539 ~L~~N~l~~~~~~~  552 (567)
T 1dce_A          539 NLQGNSLCQEEGIQ  552 (567)
T ss_dssp             ECTTSGGGGSSSCT
T ss_pred             EecCCcCCCCccHH
Confidence            88888888776544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=1.1e-18  Score=157.56  Aligned_cols=231  Identities=19%  Similarity=0.205  Sum_probs=145.9

Q ss_pred             CcccEEECCCCcCCCCCC----ccccCCc-ccceeeccccccccccchhhcCC-----CCCCEEeCCCCcCCCCCChh--
Q 039997            2 SALEILDLRDNYFSGRIP----YGINEHS-NLRALLLKGNYLQGPIPHQLCQL-----RKLSIMDLSHNRLNGSIPSC--   69 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~----~~~~~l~-~L~~L~L~~N~i~~~~~~~f~~L-----~~L~~LdLs~N~l~~~~p~~--   69 (333)
                      ++|++|||++|.|++..+    ..|.+++ +|++|+|++|++++..+..|..+     ++|++|++++|.++...+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            469999999999997666    7788888 89999999999998888888775     99999999999998665542  


Q ss_pred             --h----hccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--h-
Q 039997           70 --I----TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--L-  140 (333)
Q Consensus        70 --l----~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-  140 (333)
                        +    .+|+.|++++|.+.......-   .............+.++.+.+..            .....+....  . 
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l---~~~l~~~~~~L~~L~Ls~N~l~~------------~~~~~l~~~l~~~~  166 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEF---KQAFSNLPASITSLNLRGNDLGI------------KSSDELIQILAAIP  166 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHH---HHHHTTSCTTCCEEECTTSCGGG------------SCHHHHHHHHHTSC
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHH---HHHHHhCCCceeEEEccCCcCCH------------HHHHHHHHHHhcCC
Confidence              2    467788888888765321100   00000000111111222111110            0000111110  2 


Q ss_pred             ccccEEECCCCcccccCCcccc----Cc-cccceeecccccCCCC----chHHHhC-CCCCCEEeccCCcccCCCC----
Q 039997          141 EYMAGLDLSSNELTGDISSEIG----DL-RNIHGLNLSHNFLSGS----IPESFSN-LKMIESLDLSHNKLNGQIP----  206 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~~----  206 (333)
                      .+|++|+|++|++++..+..+.    .. ++|+.|+|++|.++..    .+..+.. .++|+.|++++|.++....    
T Consensus       167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  246 (362)
T 3goz_A          167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK  246 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred             ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence            3788888888888866654433    34 5888888888888853    3445555 3588888888888876543    


Q ss_pred             -CCCCCCCCCEEEcccCcCcccCC--------CCccccccCccccCCCCC
Q 039997          207 -QLTELHSLSKFDVSYNNLSCPIP--------DKEQFSTFDESSYRGNLN  247 (333)
Q Consensus       207 -~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~l~~~~~~~n~~  247 (333)
                       .+..+++|+.|++++|.+....+        .......+..+++.+|..
T Consensus       247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence             34667788888888887442221        112344455566666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=6.3e-18  Score=161.74  Aligned_cols=186  Identities=18%  Similarity=0.240  Sum_probs=146.0

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCc
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGD   82 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~   82 (333)
                      +..++++.+.+++..  .+..+++|+.|++++|.|+.+.  .|..+++|+.|+|++|++++..| ..+.+|+.|++.+|.
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC
Confidence            344567778877543  3578899999999999998553  58999999999999999985543 234556666777776


Q ss_pred             cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  162 (333)
                      +..+...                                              .  .+++|+.|+|++|.+++.  ..+.
T Consensus        99 l~~l~~l----------------------------------------------~--~l~~L~~L~Ls~N~l~~l--~~l~  128 (605)
T 1m9s_A           99 IKDLSSL----------------------------------------------K--DLKKLKSLSLEHNGISDI--NGLV  128 (605)
T ss_dssp             CCCCTTS----------------------------------------------T--TCTTCCEEECTTSCCCCC--GGGG
T ss_pred             CCCChhh----------------------------------------------c--cCCCCCEEEecCCCCCCC--cccc
Confidence            6552110                                              0  057899999999999964  4588


Q ss_pred             CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCcccc
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSY  242 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~  242 (333)
                      .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..+ +..+++|+.|++++|.++.. +....+..+..+.+
T Consensus       129 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL  204 (605)
T ss_dssp             GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEC
T ss_pred             CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEc
Confidence            999999999999999976  578999999999999999998777 88899999999999999865 44445666777777


Q ss_pred             CCCCC
Q 039997          243 RGNLN  247 (333)
Q Consensus       243 ~~n~~  247 (333)
                      .+|+.
T Consensus       205 ~~N~l  209 (605)
T 1m9s_A          205 FSQEC  209 (605)
T ss_dssp             CSEEE
T ss_pred             cCCcC
Confidence            66644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=3.5e-19  Score=160.69  Aligned_cols=221  Identities=17%  Similarity=0.128  Sum_probs=146.6

Q ss_pred             EEECCCCcCCCCCCccccCCcccceeeccccccccccc----hhhcCCC-CCCEEeCCCCcCCCCCChhh--------hc
Q 039997            6 ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIP----HQLCQLR-KLSIMDLSHNRLNGSIPSCI--------TN   72 (333)
Q Consensus         6 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~f~~L~-~L~~LdLs~N~l~~~~p~~l--------~~   72 (333)
                      .+++++|.+++.+|..+...++|++|+|++|.+++..+    +.|..++ +|++|++++|+++...+..+        .+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            47899999998888777777779999999999998887    8899999 99999999999987666544        56


Q ss_pred             cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--------hcccc
Q 039997           73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--------LEYMA  144 (333)
Q Consensus        73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~L~  144 (333)
                      ++.|++++|.+.......-   .............+.                 +..+.+.......        ..+|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l---~~~l~~~~~~L~~L~-----------------Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDEL---VKTLAAIPFTITVLD-----------------LGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHH---HHHHHTSCTTCCEEE-----------------CCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHH---HHHHHhCCCCccEEE-----------------CcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            7788888888765321100   000000001111111                 2222222211111        24899


Q ss_pred             EEECCCCcccccCC----ccccCcc-ccceeecccccCCCCchHHHh----CC-CCCCEEeccCCcccCCC-----CCCC
Q 039997          145 GLDLSSNELTGDIS----SEIGDLR-NIHGLNLSHNFLSGSIPESFS----NL-KMIESLDLSHNKLNGQI-----PQLT  209 (333)
Q Consensus       145 ~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~~-----~~~~  209 (333)
                      +|+|++|.+++...    ..+..++ +|++|+|++|++++..+..+.    .. ++|+.||+++|.++...     ..+.
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence            99999999985443    3334555 899999999999877665444    44 58999999999988732     2333


Q ss_pred             C-CCCCCEEEcccCcCcccCCC-----CccccccCccccCCCC
Q 039997          210 E-LHSLSKFDVSYNNLSCPIPD-----KEQFSTFDESSYRGNL  246 (333)
Q Consensus       210 ~-l~~L~~L~l~~N~l~~~~~~-----~~~~~~l~~~~~~~n~  246 (333)
                      . .++|+.|++++|.++...+.     ......++.+++.+|.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            3 35899999999998754221     1233455566665553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.3e-17  Score=137.41  Aligned_cols=153  Identities=16%  Similarity=0.222  Sum_probs=126.1

Q ss_pred             cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCccccccc
Q 039997           21 GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN  100 (333)
Q Consensus        21 ~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~  100 (333)
                      +...+++|++|++++|.++.+ | .+..+++|++|++++|.++. + ..+..                            
T Consensus        39 ~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~----------------------------   86 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN-Y-NPISG----------------------------   86 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC-C-GGGTT----------------------------
T ss_pred             ChhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc-c-hhhhc----------------------------
Confidence            446778999999999999844 4 58889999999999997652 2 22322                            


Q ss_pred             ccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCC
Q 039997          101 YYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS  180 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  180 (333)
                                                             +++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus        87 ---------------------------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  127 (197)
T 4ezg_A           87 ---------------------------------------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS  127 (197)
T ss_dssp             ---------------------------------------CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred             ---------------------------------------CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence                                                   46789999999999988888999999999999999999987


Q ss_pred             chHHHhCCCCCCEEeccCCc-ccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCC
Q 039997          181 IPESFSNLKMIESLDLSHNK-LNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNL  246 (333)
Q Consensus       181 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~  246 (333)
                      .+..++.+++|+.|++++|. ++.+ +.+..+++|+.|++++|.++.. +....+..++.+++.+|+
T Consensus       128 ~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          128 ILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC-
T ss_pred             hHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCcc
Confidence            88999999999999999998 6654 4788899999999999999864 344566777777777775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=5.4e-19  Score=160.82  Aligned_cols=212  Identities=18%  Similarity=0.223  Sum_probs=141.0

Q ss_pred             CcccEEECCCCcCC---CCCCccc-------cCCcccceeecccccccc----ccchhhcCCCCCCEEeCCCCcCCCCCC
Q 039997            2 SALEILDLRDNYFS---GRIPYGI-------NEHSNLRALLLKGNYLQG----PIPHQLCQLRKLSIMDLSHNRLNGSIP   67 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~---~~~~~~~-------~~l~~L~~L~L~~N~i~~----~~~~~f~~L~~L~~LdLs~N~l~~~~p   67 (333)
                      ++|++|+|++|.+.   +.+|..+       ..+++|++|+|++|.++.    ..|..+..+++|++|+|++|.++...+
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  139 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  139 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence            68999999996544   4455554       688999999999999986    467788999999999999999863322


Q ss_pred             h----hh------------hccccccccCCcccc--ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeec
Q 039997           68 S----CI------------TNLLFWKVGNGDLYG--LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTK  129 (333)
Q Consensus        68 ~----~l------------~~L~~L~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (333)
                      .    .+            .+|+.|++++|.+..  +.....      ..........+.+..+.+.....        .
T Consensus       140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------~l~~~~~L~~L~L~~n~l~~~g~--------~  205 (386)
T 2ca6_A          140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK------TFQSHRLLHTVKMVQNGIRPEGI--------E  205 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH------HHHHCTTCCEEECCSSCCCHHHH--------H
T ss_pred             HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH------HHHhCCCcCEEECcCCCCCHhHH--------H
Confidence            2    22            577788888887752  110000      00001111112222211110000        0


Q ss_pred             cccc-cchhhhhccccEEECCCCccc----ccCCccccCccccceeecccccCCCC----chHHHhC--CCCCCEEeccC
Q 039997          130 NRYE-SYKGVILEYMAGLDLSSNELT----GDISSEIGDLRNIHGLNLSHNFLSGS----IPESFSN--LKMIESLDLSH  198 (333)
Q Consensus       130 ~~~~-~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~--l~~L~~L~L~~  198 (333)
                      .... .+.  .+++|+.|+|++|.++    ...|..+..+++|+.|+|++|.+++.    ++..+..  +++|+.|++++
T Consensus       206 ~l~~~~l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~  283 (386)
T 2ca6_A          206 HLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  283 (386)
T ss_dssp             HHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             HHHHHHhh--cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence            0000 111  1578999999999986    45677888889999999999998865    3555644  88999999999


Q ss_pred             CcccC-----CCCCC-CCCCCCCEEEcccCcCcccCC
Q 039997          199 NKLNG-----QIPQL-TELHSLSKFDVSYNNLSCPIP  229 (333)
Q Consensus       199 N~l~~-----~~~~~-~~l~~L~~L~l~~N~l~~~~~  229 (333)
                      |.++.     +...+ .++++|+.|++++|++++..+
T Consensus       284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99987     33344 567899999999999986653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.72  E-value=8.1e-18  Score=134.88  Aligned_cols=135  Identities=24%  Similarity=0.251  Sum_probs=112.9

Q ss_pred             Ccccceeeccccccc-cccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccC
Q 039997           25 HSNLRALLLKGNYLQ-GPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN  103 (333)
Q Consensus        25 l~~L~~L~L~~N~i~-~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~  103 (333)
                      .++|++|++++|+++ +..|..+..+++|+.|++++|.++..  ..+..                               
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   69 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------   69 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence            378999999999997 56677788899999999999998743  22222                               


Q ss_pred             CCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCch-
Q 039997          104 STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP-  182 (333)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-  182 (333)
                                                          +++|+.|++++|++++..|..+.++++|+.|++++|.+++... 
T Consensus        70 ------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  113 (168)
T 2ell_A           70 ------------------------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL  113 (168)
T ss_dssp             ------------------------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGG
T ss_pred             ------------------------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhH
Confidence                                                4678899999999998788888889999999999999997543 


Q ss_pred             HHHhCCCCCCEEeccCCcccCCCC----CCCCCCCCCEEEcccCcCcccC
Q 039997          183 ESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       183 ~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      ..+..+++|+.|++++|.+++.++    .+..+++|+.|++++|.+....
T Consensus       114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            788999999999999999998877    6888999999999999876543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=4.5e-19  Score=161.34  Aligned_cols=237  Identities=14%  Similarity=0.171  Sum_probs=156.8

Q ss_pred             CCcccEEECCCCcCCCCCC----ccccCCcccceeeccccccc---cccchhh-------cCCCCCCEEeCCCCcCCCC-
Q 039997            1 DSALEILDLRDNYFSGRIP----YGINEHSNLRALLLKGNYLQ---GPIPHQL-------CQLRKLSIMDLSHNRLNGS-   65 (333)
Q Consensus         1 ~~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~L~~N~i~---~~~~~~f-------~~L~~L~~LdLs~N~l~~~-   65 (333)
                      .++|++|+|++|.|+...+    ..+..+++|++|+|++|.+.   +..|..+       ..+++|++|+|++|.++.. 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            3679999999999986533    44778999999999997554   4445444       7899999999999999862 


Q ss_pred             ---CChhh---hccccccccCCccccccccCCCCccccc-c----cccCCCCCcCCCCCCCCccccceEEEEeecccccc
Q 039997           66 ---IPSCI---TNLLFWKVGNGDLYGLVERGRDFDLEDI-Y----NYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES  134 (333)
Q Consensus        66 ---~p~~l---~~L~~L~~~~n~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (333)
                         +|..+   .+|+.|++.+|.+.......-....... .    ........+.++.+.+..            .....
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------------~~~~~  178 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------------GSMKE  178 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------------GGHHH
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------------HHHHH
Confidence               45444   4566777788876432110000000000 0    000111122222221110            00000


Q ss_pred             chhh--hhccccEEECCCCcccc-----cCCccccCccccceeecccccCC----CCchHHHhCCCCCCEEeccCCcccC
Q 039997          135 YKGV--ILEYMAGLDLSSNELTG-----DISSEIGDLRNIHGLNLSHNFLS----GSIPESFSNLKMIESLDLSHNKLNG  203 (333)
Q Consensus       135 ~~~~--~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~  203 (333)
                      +...  .+++|++|++++|+++.     ..+..+..+++|+.|+|++|.++    ...|..+..+++|+.|++++|.++.
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            0010  15689999999999983     34457889999999999999996    4567789999999999999999986


Q ss_pred             C----CC-CC--CCCCCCCEEEcccCcCcc----cCCCC--ccccccCccccCCCCCCC
Q 039997          204 Q----IP-QL--TELHSLSKFDVSYNNLSC----PIPDK--EQFSTFDESSYRGNLNLC  249 (333)
Q Consensus       204 ~----~~-~~--~~l~~L~~L~l~~N~l~~----~~~~~--~~~~~l~~~~~~~n~~~c  249 (333)
                      .    .+ .+  ..+++|+.|++++|.++.    ..+..  ..++.+..+++.+|+...
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            5    22 44  448999999999999987    23322  235677888888887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.71  E-value=1.2e-17  Score=134.21  Aligned_cols=120  Identities=21%  Similarity=0.201  Sum_probs=96.5

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV  219 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l  219 (333)
                      .+|+.|+|++|+++++.|..|.++++|+.|+|++|+|+++.+..|..+++|++|+|++|+++++.+ .+..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            568889999999999999999999999999999999999988889999999999999999999888 7999999999999


Q ss_pred             ccCcCcccCCCCccccc-cCccccCCCCCCCCCCCCCCCCCC
Q 039997          220 SYNNLSCPIPDKEQFST-FDESSYRGNLNLCCPPINKSCTNL  260 (333)
Q Consensus       220 ~~N~l~~~~~~~~~~~~-l~~~~~~~n~~~c~~~~~~~c~~~  260 (333)
                      ++|+++|.|+....+.. +.........+....+....|..+
T Consensus       110 ~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~  151 (170)
T 3g39_A          110 LNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT  151 (170)
T ss_dssp             CSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-
T ss_pred             CCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC
Confidence            99999999975544432 222111111122234566677653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=3.7e-18  Score=152.14  Aligned_cols=195  Identities=17%  Similarity=0.194  Sum_probs=127.0

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccc-cchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGP-IPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~   77 (333)
                      ++++.|++++|.+++..+. +.++++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+   .+|+.|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5688999999999976655 55789999999999998865 77888999999999999999876666554   4556666


Q ss_pred             ccCC-cccc--ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chh--hhhc-cccEEECC
Q 039997           78 VGNG-DLYG--LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKG--VILE-YMAGLDLS  149 (333)
Q Consensus        78 ~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~l~-~L~~L~Ls  149 (333)
                      +.+| .+.+  +...         .........+.+..+.                .+..  ++.  ..++ +|++|+++
T Consensus       149 L~~~~~l~~~~l~~~---------~~~~~~L~~L~l~~~~----------------~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          149 LSGCSGFSEFALQTL---------LSSCSRLDELNLSWCF----------------DFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBSCCHHHHHHH---------HHHCTTCCEEECCCCT----------------TCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CCCCCCCCHHHHHHH---------HhcCCCCCEEcCCCCC----------------CcChHHHHHHHHhcccCCCEEEeC
Confidence            6666 3332  1100         0001111111111110                1111  111  0145 78888888


Q ss_pred             CC--ccc-ccCCccccCccccceeeccccc-CCCCchHHHhCCCCCCEEeccCCc-ccCCCC-CCCCCCCCCEEEcccC
Q 039997          150 SN--ELT-GDISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNK-LNGQIP-QLTELHSLSKFDVSYN  222 (333)
Q Consensus       150 ~n--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l~~L~~L~l~~N  222 (333)
                      +|  .++ +..+..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +..... .+..+++|+.|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            88  444 3445566777888888888888 665666677788888888888885 221111 4667788888888877

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=3.3e-18  Score=152.48  Aligned_cols=215  Identities=17%  Similarity=0.194  Sum_probs=145.1

Q ss_pred             cccEEECCCCcCCCCCCccccCC--cccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCC-CChhh---hccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEH--SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPSCI---TNLLFW   76 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~-~p~~l---~~L~~L   76 (333)
                      .++.+|+++|.+.   +..+..+  ++++.|++++|.+++..+. +..+++|++|++++|.++.. +|..+   .+|+.|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4789999999887   4667777  8999999999999977766 45799999999999998754 55444   456677


Q ss_pred             cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc--cchh--hhhccccEEECCCC-
Q 039997           77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE--SYKG--VILEYMAGLDLSSN-  151 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~l~~L~~L~Ls~n-  151 (333)
                      ++.+|.+.+....        ..........+.++.+.                .+.  .++.  ..+++|++|++++| 
T Consensus       124 ~L~~~~l~~~~~~--------~l~~~~~L~~L~L~~~~----------------~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          124 SLEGLRLSDPIVN--------TLAKNSNLVRLNLSGCS----------------GFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             ECTTCBCCHHHHH--------HHTTCTTCSEEECTTCB----------------SCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             eCcCcccCHHHHH--------HHhcCCCCCEEECCCCC----------------CCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence            7777765431100        00001111111121110                111  1111  11678999999999 


Q ss_pred             ccccc-CCccccCcc-ccceeecccc--cCC-CCchHHHhCCCCCCEEeccCCc-ccCCCC-CCCCCCCCCEEEcccCc-
Q 039997          152 ELTGD-ISSEIGDLR-NIHGLNLSHN--FLS-GSIPESFSNLKMIESLDLSHNK-LNGQIP-QLTELHSLSKFDVSYNN-  223 (333)
Q Consensus       152 ~l~~~-~~~~~~~l~-~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l~~L~~L~l~~N~-  223 (333)
                      .+++. .+..+..++ +|++|++++|  .++ +..+..+..+++|+.|++++|. +++..+ .+..+++|+.|++++|. 
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            88864 466788889 9999999999  455 3456778889999999999998 665545 78888999999999995 


Q ss_pred             Cccc-CCCCccccccCccccCCC
Q 039997          224 LSCP-IPDKEQFSTFDESSYRGN  245 (333)
Q Consensus       224 l~~~-~~~~~~~~~l~~~~~~~n  245 (333)
                      +... ......+..++.+++.++
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc
Confidence            2211 001224555666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=2.5e-17  Score=129.24  Aligned_cols=128  Identities=21%  Similarity=0.268  Sum_probs=106.9

Q ss_pred             Ccccceeeccccccc-cccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccC
Q 039997           25 HSNLRALLLKGNYLQ-GPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN  103 (333)
Q Consensus        25 l~~L~~L~L~~N~i~-~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~  103 (333)
                      .++|++|++++|.++ +..|..+..+++|+.|++++|.+++.  ..+..                               
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   62 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------   62 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence            478999999999998 67777889999999999999998843  22222                               


Q ss_pred             CCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCC-ch
Q 039997          104 STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS-IP  182 (333)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~  182 (333)
                                                          +++|+.|++++|.+++..|..+..+++|+.|++++|.+++. .+
T Consensus        63 ------------------------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~  106 (149)
T 2je0_A           63 ------------------------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI  106 (149)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHH
T ss_pred             ------------------------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHH
Confidence                                                46788999999999987888888899999999999999964 34


Q ss_pred             HHHhCCCCCCEEeccCCcccCCCC----CCCCCCCCCEEEccc
Q 039997          183 ESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFDVSY  221 (333)
Q Consensus       183 ~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~l~~  221 (333)
                      ..+..+++|+.|++++|.+++..+    .+..+++|+.|++++
T Consensus       107 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          107 EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            778999999999999999998776    577889999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.68  E-value=7.3e-17  Score=130.35  Aligned_cols=136  Identities=16%  Similarity=0.134  Sum_probs=100.9

Q ss_pred             cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCccccccc
Q 039997           21 GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN  100 (333)
Q Consensus        21 ~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~  100 (333)
                      .+...++|++|++++|+++.+ |......++|++||+++|.+++.  ..+..                            
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~----------------------------   62 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPL----------------------------   62 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCC----------------------------
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccccc----------------------------
Confidence            456678888888888888854 44333334888888888888742  12211                            


Q ss_pred             ccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCC
Q 039997          101 YYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS  180 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  180 (333)
                                                             +++|++|++++|.+++..+..|..+++|+.|++++|+++..
T Consensus        63 ---------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  103 (176)
T 1a9n_A           63 ---------------------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL  103 (176)
T ss_dssp             ---------------------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred             ---------------------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcc
Confidence                                                   46688888888888877667678888899999999888743


Q ss_pred             ch-HHHhCCCCCCEEeccCCcccCCCCC----CCCCCCCCEEEcccCcCcc
Q 039997          181 IP-ESFSNLKMIESLDLSHNKLNGQIPQ----LTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       181 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~l~~N~l~~  226 (333)
                      .+ ..+..+++|+.|++++|.++..++.    +..+++|+.+|+++|....
T Consensus       104 ~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            32 2788888899999999988866553    7788889999988887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.67  E-value=1.5e-16  Score=128.20  Aligned_cols=120  Identities=21%  Similarity=0.236  Sum_probs=96.5

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV  219 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l  219 (333)
                      ..|+.|+|++|++++..|..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+++++++ .+..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            568899999999999999999999999999999999998888889999999999999999999888 6999999999999


Q ss_pred             ccCcCcccCCCCccccccCcc---cc-CCCCCCCCCCCCCCCCCC
Q 039997          220 SYNNLSCPIPDKEQFSTFDES---SY-RGNLNLCCPPINKSCTNL  260 (333)
Q Consensus       220 ~~N~l~~~~~~~~~~~~l~~~---~~-~~n~~~c~~~~~~~c~~~  260 (333)
                      ++|++.|.|+....+..+...   .+ ......+..++...|..+
T Consensus       113 ~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  157 (174)
T 2r9u_A          113 YNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT  157 (174)
T ss_dssp             CSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT
T ss_pred             CCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC
Confidence            999999998755433322111   01 011112345667778754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=1.3e-17  Score=163.09  Aligned_cols=150  Identities=18%  Similarity=0.154  Sum_probs=74.6

Q ss_pred             CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcc---ccccccCCccccccccCCCCc
Q 039997           18 IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNL---LFWKVGNGDLYGLVERGRDFD   94 (333)
Q Consensus        18 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L---~~L~~~~n~~~~~~~~~~~~~   94 (333)
                      .+..|.+++.|+.|+|++|.+.. +|..+..+++|++|+|++|.|+ .+|..+.+|   +.|++++|.+..++....   
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~---  290 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG---  290 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGG---
T ss_pred             ChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhc---
Confidence            35566666777777777777763 3333446777777777777776 556554433   333344444332211000   


Q ss_pred             ccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeeccc
Q 039997           95 LEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH  174 (333)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  174 (333)
                                                                  .+.+|++|+|++|.|+ .+|..|..+++|+.|+|++
T Consensus       291 --------------------------------------------~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          291 --------------------------------------------SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             --------------------------------------------GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             --------------------------------------------CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence                                                        0455666666666666 3444566666666666666


Q ss_pred             ccCCCCchHHHhCCC-CCCEEeccCCcccCCCCCCCCCCCCCEEEcccC
Q 039997          175 NFLSGSIPESFSNLK-MIESLDLSHNKLNGQIPQLTELHSLSKFDVSYN  222 (333)
Q Consensus       175 N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N  222 (333)
                      |.|++.+|..+..+. .+..+++++|.+++..|     ..|+.|+++.|
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIEINTD  369 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC---------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeEeecc
Confidence            666666665554432 12235666666665444     23455556655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=1e-18  Score=144.08  Aligned_cols=62  Identities=26%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCC
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQ  204 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  204 (333)
                      ++|+.|++++|++++. | .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.
T Consensus        93 ~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           93 DTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            4455566666666543 2 35555666666666666654322 3455566666666666665544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=1.2e-16  Score=128.97  Aligned_cols=131  Identities=18%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCc-ccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHS-NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~   80 (333)
                      ++|++|++++|.++. +|. +..+. +|++|++++|+|+++  ..|..+++|++|++++|++++..+..+..        
T Consensus        19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--------   86 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA--------   86 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH--------
T ss_pred             CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc--------
Confidence            568889999998884 454 44444 889999999988866  56888889999999999888443333333        


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC-c
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-S  159 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~  159 (333)
                                                                                 +++|+.|++++|+++...+ .
T Consensus        87 -----------------------------------------------------------l~~L~~L~L~~N~i~~~~~~~  107 (176)
T 1a9n_A           87 -----------------------------------------------------------LPDLTELILTNNSLVELGDLD  107 (176)
T ss_dssp             -----------------------------------------------------------CTTCCEEECCSCCCCCGGGGG
T ss_pred             -----------------------------------------------------------CCCCCEEECCCCcCCcchhhH
Confidence                                                                       3667888899988875443 3


Q ss_pred             cccCccccceeecccccCCCCchH---HHhCCCCCCEEeccCCcccC
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPE---SFSNLKMIESLDLSHNKLNG  203 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~  203 (333)
                      .+..+++|+.|++++|.++...+.   .+..+++|+.||+++|.+..
T Consensus       108 ~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          108 PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            778888899999999988854333   48888889999988887653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=2.8e-16  Score=153.84  Aligned_cols=178  Identities=22%  Similarity=0.201  Sum_probs=88.1

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccce-----eeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---c
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRA-----LLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---L   73 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~-----L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L   73 (333)
                      ++++.|+|++|.+.. .+..+.....|+.     ++++.|.+. +.++.|..+.+|+.|+|++|.+. .+|..+..   |
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            346788999999884 3443332222222     333344444 56888999999999999999998 66665543   4


Q ss_pred             ccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcc
Q 039997           74 LFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNEL  153 (333)
Q Consensus        74 ~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  153 (333)
                      +.|++++|.+..++....                                               .+.+|+.|+|++|+|
T Consensus       250 ~~L~Ls~N~l~~lp~~~~-----------------------------------------------~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIK-----------------------------------------------NLSNLRVLDLSHNRL  282 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGG-----------------------------------------------GGTTCCEEECTTSCC
T ss_pred             CEEEeeCCcCcccChhhh-----------------------------------------------CCCCCCEEeCcCCcC
Confidence            455555555543221110                                               056677777777777


Q ss_pred             cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC-CCCEEEcccCcCcccCCCC
Q 039997          154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH-SLSKFDVSYNNLSCPIPDK  231 (333)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~-~L~~L~l~~N~l~~~~~~~  231 (333)
                      + .+|..|.++++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.+++..+ .+.... .+..+++++|.+++..|..
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            7 55677777777777777777777 345557777777777777777776655 332221 1223567777777766653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=4.6e-16  Score=138.38  Aligned_cols=223  Identities=11%  Similarity=0.083  Sum_probs=144.5

Q ss_pred             CcccEEECCCCcCC--------------------CCCCccccC--------CcccceeeccccccccccchhhcCCCCCC
Q 039997            2 SALEILDLRDNYFS--------------------GRIPYGINE--------HSNLRALLLKGNYLQGPIPHQLCQLRKLS   53 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~--------------------~~~~~~~~~--------l~~L~~L~L~~N~i~~~~~~~f~~L~~L~   53 (333)
                      ++|++|||++|.|.                    .+.+..|.+        +++|+.++|.+ .++.+.+.+|.++++|+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            67999999999998                    344567888        99999999999 88889999999999999


Q ss_pred             EEeCCCCcCCCCCChhhhccccccccCCcccc----ccccCCCCccccc--c----cccCCCCCcCC-CC-CCCCccccc
Q 039997           54 IMDLSHNRLNGSIPSCITNLLFWKVGNGDLYG----LVERGRDFDLEDI--Y----NYYNSTVPLSL-DR-SDTRTLDTQ  121 (333)
Q Consensus        54 ~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~----~~~~~~~~~~~~~--~----~~~~~~~~~~~-~~-~~~~~~~~~  121 (333)
                      .+++++|.+....+.+|.+...+.........    ........+....  .    ....+..+..+ .. .........
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l  207 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL  207 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence            99999999875666666554322221111100    0000000000000  0    00000000000 00 000000000


Q ss_pred             eEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCC-EEeccCCc
Q 039997          122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIE-SLDLSHNK  200 (333)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~  200 (333)
                      .....+.......+. ..+++|+.+++++|+++.+.+.+|.++++|+.+++++| ++.+.+.+|.++++|+ .+++.+ .
T Consensus       208 ~~~~~l~~~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          208 TIEGKLDNADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEECCCHHHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEeeeecHHHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence            001101000000000 01578999999999999999999999999999999998 8878889999999999 999998 7


Q ss_pred             ccCCCC-CCCCCCCCCEEEcccCcCcccC
Q 039997          201 LNGQIP-QLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       201 l~~~~~-~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      ++.+.+ .|.++++|+.+++++|.++...
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~  313 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKITTLG  313 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCccCccc
Confidence            887877 9999999999999999887554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=3.2e-15  Score=119.97  Aligned_cols=61  Identities=23%  Similarity=0.307  Sum_probs=39.2

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP   67 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p   67 (333)
                      .+++|+++|.++ .+|..+.  ++|++|+|++|+|+++.|+.|.++++|++|+|++|++++..+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~   71 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA   71 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh
Confidence            356777777776 3555443  566777777777776666666666677766666666664333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=1.6e-17  Score=154.36  Aligned_cols=221  Identities=17%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             CcccEEECCCCcCCCC----CCccccCCcccceeeccccccccccchhh-cCCC----CCCEEeCCCCcCCC----CCCh
Q 039997            2 SALEILDLRDNYFSGR----IPYGINEHSNLRALLLKGNYLQGPIPHQL-CQLR----KLSIMDLSHNRLNG----SIPS   68 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~f-~~L~----~L~~LdLs~N~l~~----~~p~   68 (333)
                      ++|++|+|++|.+++.    ++..+..+++|++|++++|.+++..+..+ ..+.    +|++|++++|+++.    .++.
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            4567777777776632    34556666777777777777764433332 3344    57777777777662    2233


Q ss_pred             hh---hccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCcc-----------ccceEEEEeecccccc
Q 039997           69 CI---TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL-----------DTQVVVNFMTKNRYES  134 (333)
Q Consensus        69 ~l---~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  134 (333)
                      .+   .+|+.|++++|.+.......   ..............+.++.+.+...           ........+..+.+..
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~---l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQL---LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHH---HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHH---HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            33   34455555555543210000   0000000000111111111111100           0011112222222211


Q ss_pred             chhhh--------hccccEEECCCCccccc----CCccccCccccceeecccccCCCCc-----hHHHhCCCCCCEEecc
Q 039997          135 YKGVI--------LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSI-----PESFSNLKMIESLDLS  197 (333)
Q Consensus       135 ~~~~~--------l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~  197 (333)
                      .....        .++|+.|++++|.+++.    .+..+..+++|++|++++|.++...     +..+..+++|+.|+++
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW  264 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence            11000        23677777777777643    3455556677777777777766432     2222246677777777


Q ss_pred             CCcccCC-----CCCCCCCCCCCEEEcccCcCc
Q 039997          198 HNKLNGQ-----IPQLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       198 ~N~l~~~-----~~~~~~l~~L~~L~l~~N~l~  225 (333)
                      +|.++..     ...+..+++|+.|++++|.+.
T Consensus       265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            7777652     224555677777777777765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=3.5e-15  Score=141.88  Aligned_cols=121  Identities=28%  Similarity=0.326  Sum_probs=92.9

Q ss_pred             ccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccCCCC
Q 039997           27 NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTV  106 (333)
Q Consensus        27 ~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  106 (333)
                      .|++|+|++|+|+++ |. |..+++|+.|+|++|.++ .+|..+.++                                 
T Consensus       442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---------------------------------  485 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAAL---------------------------------  485 (567)
T ss_dssp             TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGC---------------------------------
T ss_pred             CceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcC---------------------------------
Confidence            578888888888864 44 788888888888888888 667666543                                 


Q ss_pred             CcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCc-hHHH
Q 039997          107 PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI-PESF  185 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~  185 (333)
                                                        ++|+.|+|++|++++ +| .+.++++|+.|+|++|+|++.. |..+
T Consensus       486 ----------------------------------~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          486 ----------------------------------RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             ----------------------------------TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             ----------------------------------CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence                                              567778888888886 34 7888888888888888888776 7888


Q ss_pred             hCCCCCCEEeccCCcccCCCCCC----CCCCCCCEEEc
Q 039997          186 SNLKMIESLDLSHNKLNGQIPQL----TELHSLSKFDV  219 (333)
Q Consensus       186 ~~l~~L~~L~L~~N~l~~~~~~~----~~l~~L~~L~l  219 (333)
                      +.+++|+.|++++|.+++.++..    ..+++|+.|++
T Consensus       530 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888888888888888776632    33677887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.60  E-value=6.7e-17  Score=150.20  Aligned_cols=204  Identities=18%  Similarity=0.104  Sum_probs=109.0

Q ss_pred             CcccEEECCCCcCCCCCCcccc-----CCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCCCCC----h
Q 039997            2 SALEILDLRDNYFSGRIPYGIN-----EHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIP----S   68 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~-----~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~~~p----~   68 (333)
                      ++|++|++++|.+++..+..+.     ..++|++|++++|.++..    .+..+..+++|++|++++|+++....    .
T Consensus       170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  249 (461)
T 1z7x_W          170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP  249 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence            5788888888888754433333     245888888888888754    46667778888888888888763211    1


Q ss_pred             ----hhhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-----cchhhh
Q 039997           69 ----CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-----SYKGVI  139 (333)
Q Consensus        69 ----~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  139 (333)
                          ...+++.|++.+|.+.......    .............+.                 +..+.+.     .+....
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~----l~~~l~~~~~L~~L~-----------------Ls~n~i~~~~~~~l~~~l  308 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGD----LCRVLRAKESLKELS-----------------LAGNELGDEGARLLCETL  308 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHH----HHHHHHHCTTCCEEE-----------------CTTCCCHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHH----HHHHHhhCCCcceEE-----------------CCCCCCchHHHHHHHHHh
Confidence                2346667777777655410000    000000000000011                 1111110     000000


Q ss_pred             ---hccccEEECCCCccccc----CCccccCccccceeecccccCCCCchHHHhC-----CCCCCEEeccCCcccC----
Q 039997          140 ---LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSIPESFSN-----LKMIESLDLSHNKLNG----  203 (333)
Q Consensus       140 ---l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----  203 (333)
                         .++|+.|++++|.+++.    .+..+..+++|++|++++|.+++..+..+..     .++|+.|++++|.++.    
T Consensus       309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  388 (461)
T 1z7x_W          309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS  388 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence               13566666666666643    2344445566666666666666443333332     4566666666666653    


Q ss_pred             CCC-CCCCCCCCCEEEcccCcCcc
Q 039997          204 QIP-QLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       204 ~~~-~~~~l~~L~~L~l~~N~l~~  226 (333)
                      ..+ .+..+++|+.|++++|+++.
T Consensus       389 ~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          389 SLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHhCCCccEEECCCCCCCH
Confidence            222 45556666666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=7.3e-15  Score=118.28  Aligned_cols=57  Identities=19%  Similarity=0.347  Sum_probs=36.9

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG   64 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~   64 (333)
                      +.+++++|.++ .+|..+.  ++|++|+|++|+|+++.|+.|.++++|+.|+|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   71 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA   71 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence            45667777765 4555443  566677777777766666666666666666666666663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=8.7e-17  Score=132.46  Aligned_cols=137  Identities=22%  Similarity=0.261  Sum_probs=116.0

Q ss_pred             ccCCcccceeeccccccccccch------hhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcc
Q 039997           22 INEHSNLRALLLKGNYLQGPIPH------QLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDL   95 (333)
Q Consensus        22 ~~~l~~L~~L~L~~N~i~~~~~~------~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~   95 (333)
                      +.....++.++++.+.+.+..|.      .|..+++|++|++++|++++ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            45567888888888888877766      89999999999999999984 55 4443                       


Q ss_pred             cccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccc
Q 039997           96 EDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN  175 (333)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  175 (333)
                                                                  +++|+.|++++|.++ ..|..+..+++|+.|++++|
T Consensus        69 --------------------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           69 --------------------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             --------------------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE
T ss_pred             --------------------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC
Confidence                                                        467889999999999 55677788899999999999


Q ss_pred             cCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCcccCCC
Q 039997          176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCPIPD  230 (333)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~  230 (333)
                      ++++ .| .+..+++|+.|++++|.++...+  .+..+++|+.+++++|++++.+|.
T Consensus       104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9996 44 68899999999999999997654  688899999999999999988765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.52  E-value=2e-14  Score=128.68  Aligned_cols=91  Identities=21%  Similarity=0.250  Sum_probs=82.5

Q ss_pred             hccccEEECCC-CcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEE
Q 039997          140 LEYMAGLDLSS-NELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L  217 (333)
                      +.+|+.|+|++ |.++++.+..|.++++|+.|+|++|+|++++|..|..+++|+.|+|++|+|+++++ .+..+. |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            35688999996 99999988999999999999999999999999999999999999999999999888 555555 9999


Q ss_pred             EcccCcCcccCCCC
Q 039997          218 DVSYNNLSCPIPDK  231 (333)
Q Consensus       218 ~l~~N~l~~~~~~~  231 (333)
                      ++++|+|.|.|...
T Consensus       109 ~l~~N~~~c~c~l~  122 (347)
T 2ifg_A          109 VLSGNPLHCSCALR  122 (347)
T ss_dssp             ECCSSCCCCCGGGH
T ss_pred             EeeCCCccCCCccH
Confidence            99999999998643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=3.7e-14  Score=126.90  Aligned_cols=105  Identities=22%  Similarity=0.179  Sum_probs=85.5

Q ss_pred             EEECCCC-cCCCCCCccccCCcccceeeccc-cccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997            6 ILDLRDN-YFSGRIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL   83 (333)
Q Consensus         6 ~L~Ls~N-~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~   83 (333)
                      .++++++ +++ .+|. +..+++|++|+|++ |+|+++.++.|.+|++|+.|+|++|+|++..|..|.+|          
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l----------   79 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT----------   79 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC----------
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC----------
Confidence            4688887 888 4777 88888999999986 99988888889999999999999999887766666553          


Q ss_pred             ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997           84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD  163 (333)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  163 (333)
                                                                               ++|+.|+|++|+|+++++..|..
T Consensus        80 ---------------------------------------------------------~~L~~L~l~~N~l~~~~~~~~~~  102 (347)
T 2ifg_A           80 ---------------------------------------------------------PRLSRLNLSFNALESLSWKTVQG  102 (347)
T ss_dssp             ---------------------------------------------------------SCCCEEECCSSCCSCCCSTTTCS
T ss_pred             ---------------------------------------------------------cCCCEEeCCCCccceeCHHHccc
Confidence                                                                     56778899999988777777777


Q ss_pred             ccccceeecccccCCCC
Q 039997          164 LRNIHGLNLSHNFLSGS  180 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~  180 (333)
                      ++ |+.|+|++|.++..
T Consensus       103 ~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A          103 LS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CC-CCEEECCSSCCCCC
T ss_pred             CC-ceEEEeeCCCccCC
Confidence            66 88888888888744

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=2.5e-13  Score=120.68  Aligned_cols=201  Identities=13%  Similarity=0.082  Sum_probs=131.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcC----CCCCChhhhcccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL----NGSIPSCITNLLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l----~~~~p~~l~~L~~L~   77 (333)
                      ++|+.++|++ .++.+.+.+|.++++|+.+++++|.+..+.+.+|.+..++..+.++.+..    ......+|.++..|.
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            6799999999 88878888999999999999999999889999999999898888877432    111122232222222


Q ss_pred             ----ccCCc---------------cccccccCCCC--cccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch
Q 039997           78 ----VGNGD---------------LYGLVERGRDF--DLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK  136 (333)
Q Consensus        78 ----~~~n~---------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (333)
                          +....               +..+.......  ..............+.+.......            .....|.
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~------------I~~~aF~  247 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT------------IPDFTFA  247 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE------------ECTTTTT
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce------------ecHhhhh
Confidence                00000               00000000000  000000000011111111110100            0111122


Q ss_pred             hhhhccccEEECCCCcccccCCccccCccccc-eeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCC
Q 039997          137 GVILEYMAGLDLSSNELTGDISSEIGDLRNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSL  214 (333)
Q Consensus       137 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L  214 (333)
                      +  +.+|+.+++++| ++.+.+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.++++.|.++.+.+ .|.++++|
T Consensus       248 ~--~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          248 Q--KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             T--CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             C--CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            2  678999999998 8888999999999999 999999 7887888999999999999999999999988 99999999


Q ss_pred             CEEEc
Q 039997          215 SKFDV  219 (333)
Q Consensus       215 ~~L~l  219 (333)
                      +.+..
T Consensus       324 ~~ly~  328 (329)
T 3sb4_A          324 KLIYK  328 (329)
T ss_dssp             CEEEC
T ss_pred             hhhcc
Confidence            99863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=2.4e-15  Score=135.70  Aligned_cols=163  Identities=19%  Similarity=0.154  Sum_probs=108.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCC-----cccceeeccccccccccchh-hcCCCCCCEEeCCCCcCCCCCChhhhcccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEH-----SNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSHNRLNGSIPSCITNLLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l-----~~L~~L~L~~N~i~~~~~~~-f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~   75 (333)
                      ++|+.|+|++|.|+......+...     ++|++|+|++|.++...... ...+++|+.|||++|.++......+...- 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L-  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL-  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence            467888888888874433333332     57888888888876443333 23456788888888877632222221100 


Q ss_pred             ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997           76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG  155 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  155 (333)
                       .                                                            .....|+.|+|++|.++.
T Consensus       151 -~------------------------------------------------------------~~~~~L~~L~Ls~n~l~~  169 (372)
T 3un9_A          151 -L------------------------------------------------------------HDQCQITTLRLSNNPLTA  169 (372)
T ss_dssp             -H------------------------------------------------------------STTCCCCEEECCSSCCHH
T ss_pred             -H------------------------------------------------------------hcCCccceeeCCCCCCCh
Confidence             0                                                            003568899999999875


Q ss_pred             c----CCccccCccccceeecccccCCCCc----hHHHhCCCCCCEEeccCCcccCCCC-----CCCCCCCCCEEEcccC
Q 039997          156 D----ISSEIGDLRNIHGLNLSHNFLSGSI----PESFSNLKMIESLDLSHNKLNGQIP-----QLTELHSLSKFDVSYN  222 (333)
Q Consensus       156 ~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~l~~N  222 (333)
                      .    .+..+...++|++|+|++|.|+...    ...+...++|+.|+|++|.++....     .+...+.|+.|++++|
T Consensus       170 ~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            3    3344467788999999999987432    4566778899999999999875322     3445678999999999


Q ss_pred             cCcc
Q 039997          223 NLSC  226 (333)
Q Consensus       223 ~l~~  226 (333)
                      +++.
T Consensus       250 ~i~~  253 (372)
T 3un9_A          250 ELSS  253 (372)
T ss_dssp             SCCH
T ss_pred             CCCH
Confidence            8864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=5.5e-13  Score=120.28  Aligned_cols=161  Identities=17%  Similarity=0.122  Sum_probs=108.9

Q ss_pred             CcccEEECCCCcCCCCCCcc-ccCCcccceeeccccccccccchhh-----cCCCCCCEEeCCCCcCCCCCChhhhcccc
Q 039997            2 SALEILDLRDNYFSGRIPYG-INEHSNLRALLLKGNYLQGPIPHQL-----CQLRKLSIMDLSHNRLNGSIPSCITNLLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~f-----~~L~~L~~LdLs~N~l~~~~p~~l~~L~~   75 (333)
                      ++|++|||++|.|+...... ...+++|++|+|++|.|+......+     ...++|++|+|++|.++......+...  
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG--  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH--
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH--
Confidence            58999999999997543333 3456899999999999986555554     357899999999999873211111100  


Q ss_pred             ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997           76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG  155 (333)
Q Consensus        76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  155 (333)
                      |                                                           .  ..++|++|+|++|.+++
T Consensus       179 L-----------------------------------------------------------~--~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          179 L-----------------------------------------------------------A--GNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             H-----------------------------------------------------------H--TCSSCCEEECTTSSCHH
T ss_pred             H-----------------------------------------------------------h--cCCCcCEEeCCCCCCCc
Confidence            0                                                           0  04668999999999985


Q ss_pred             cC----CccccCccccceeecccccCCCC----chHHHhCCCCCCEEeccCCcccCCCC-CCCCC---C--CCCEEE--c
Q 039997          156 DI----SSEIGDLRNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQIP-QLTEL---H--SLSKFD--V  219 (333)
Q Consensus       156 ~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l---~--~L~~L~--l  219 (333)
                      ..    +..+...++|+.|+|++|.|+..    ....+...++|+.|||++|.|+.... .+..+   .  .++.+.  +
T Consensus       198 ~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll  277 (372)
T 3un9_A          198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT  277 (372)
T ss_dssp             HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC
T ss_pred             HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhh
Confidence            33    45667778999999999999853    23445567899999999999875433 22222   1  155555  5


Q ss_pred             ccCcCc
Q 039997          220 SYNNLS  225 (333)
Q Consensus       220 ~~N~l~  225 (333)
                      .+|.+.
T Consensus       278 ~~~~~~  283 (372)
T 3un9_A          278 EGTAVS  283 (372)
T ss_dssp             ----CH
T ss_pred             cCCccC
Confidence            555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.21  E-value=1.4e-10  Score=105.62  Aligned_cols=66  Identities=14%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI   70 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l   70 (333)
                      .+|+.+++..+ ++.+...+|.+ .+|+.+.+.. .++.+.+.+|.++.+|+.+++++|+++.....+|
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF  200 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF  200 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred             CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence            35777787766 66566777777 4688888875 6666777888888888888888887774433444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.19  E-value=1.7e-12  Score=124.24  Aligned_cols=85  Identities=14%  Similarity=0.109  Sum_probs=48.9

Q ss_pred             hccccEEECCCCcccccCC-ccccCccccceeecccccCC-CCchHHHhCCCCCCEEeccC-----------CcccCCCC
Q 039997          140 LEYMAGLDLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLS-GSIPESFSNLKMIESLDLSH-----------NKLNGQIP  206 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~~  206 (333)
                      +++|++|++++|.+++... ..+..+++|+.|+++ +.+. ...+..+..+++|+.|++++           |.++....
T Consensus       292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~  370 (592)
T 3ogk_B          292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL  370 (592)
T ss_dssp             GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred             cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence            5678888888888654333 335667777777777 3333 22333445567777777772           44442211


Q ss_pred             --CCCCCCCCCEEEcccCcCc
Q 039997          207 --QLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       207 --~~~~l~~L~~L~l~~N~l~  225 (333)
                        ....+++|+.|+++.|.++
T Consensus       371 ~~l~~~~~~L~~L~l~~~~l~  391 (592)
T 3ogk_B          371 IALAQGCQELEYMAVYVSDIT  391 (592)
T ss_dssp             HHHHHHCTTCSEEEEEESCCC
T ss_pred             HHHHhhCccCeEEEeecCCcc
Confidence              1233566666666655554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.12  E-value=1.6e-11  Score=117.41  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=36.2

Q ss_pred             CcccEEECCCCcC---CCCCCcccc------------CCcccceeeccccccccccchhhcCC--CCCCEEeCCCCc
Q 039997            2 SALEILDLRDNYF---SGRIPYGIN------------EHSNLRALLLKGNYLQGPIPHQLCQL--RKLSIMDLSHNR   61 (333)
Q Consensus         2 ~~L~~L~Ls~N~i---~~~~~~~~~------------~l~~L~~L~L~~N~i~~~~~~~f~~L--~~L~~LdLs~N~   61 (333)
                      ++|+.|+|+++.-   .+.+|..++            .+++|++|+|++|.+++..+..+...  .+|++|++++|.
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred             CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence            4677777766432   122332222            56778888888877765555555543  347777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.12  E-value=8.9e-10  Score=100.22  Aligned_cols=79  Identities=9%  Similarity=0.057  Sum_probs=42.5

Q ss_pred             cccEEECCCCcccccCCccccCccccceeecccccCC-----CCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCC
Q 039997          142 YMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS-----GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLS  215 (333)
Q Consensus       142 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~  215 (333)
                      +|+.+++ .+.++.+...+|.++++|+.+++.+|.+.     .+.+.+|.++++|+.+++.+ .++.+.. .|.++.+|+
T Consensus       249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            4555555 23344455556666666666666555543     24445566666666666653 3444444 555556666


Q ss_pred             EEEcccC
Q 039997          216 KFDVSYN  222 (333)
Q Consensus       216 ~L~l~~N  222 (333)
                      .+.+..|
T Consensus       327 ~l~lp~~  333 (401)
T 4fdw_A          327 QLTIPAN  333 (401)
T ss_dssp             EEEECTT
T ss_pred             EEEECcc
Confidence            6665433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.09  E-value=9.6e-12  Score=119.01  Aligned_cols=56  Identities=13%  Similarity=0.096  Sum_probs=29.3

Q ss_pred             CccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcccCC-CC-CCCCCCCCCEEEc
Q 039997          163 DLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ-IP-QLTELHSLSKFDV  219 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~~l~~L~~L~l  219 (333)
                      .+++|++|++++|.+++.. ...+..+++|+.|++++| +... .+ ....+++|+.|++
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            4566666666666655321 222445666666666666 3211 11 1223566777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=7.4e-11  Score=112.84  Aligned_cols=179  Identities=14%  Similarity=0.038  Sum_probs=112.5

Q ss_pred             CcccEEECCCCcCCCC-CCccccCCcccceeecc---------ccccccccchhhc-CCCCCCEEeCCCCcCCCCCChh-
Q 039997            2 SALEILDLRDNYFSGR-IPYGINEHSNLRALLLK---------GNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPSC-   69 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L~---------~N~i~~~~~~~f~-~L~~L~~LdLs~N~l~~~~p~~-   69 (333)
                      ++|++|++++| +++. .+.....+++|++|+++         .+.+++.....+. ++++|+.|+++.|.++...+.. 
T Consensus       314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l  392 (594)
T 2p1m_B          314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI  392 (594)
T ss_dssp             TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred             CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence            67999999988 4422 22233458899999883         3556543333333 5899999999989887543332 


Q ss_pred             ---hhccccccccCC------ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch--hh
Q 039997           70 ---ITNLLFWKVGNG------DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK--GV  138 (333)
Q Consensus        70 ---l~~L~~L~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  138 (333)
                         +.+|+.|++..+      .+...+.                                           ...+.  ..
T Consensus       393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~-------------------------------------------~~~~~~l~~  429 (594)
T 2p1m_B          393 ARNRPNMTRFRLCIIEPKAPDYLTLEPL-------------------------------------------DIGFGAIVE  429 (594)
T ss_dssp             HHHCTTCCEEEEEESSTTCCCTTTCCCT-------------------------------------------HHHHHHHHH
T ss_pred             HhhCCCcceeEeecccCCCcccccCCch-------------------------------------------hhHHHHHHh
Confidence               345555555421      1110000                                           00000  00


Q ss_pred             hhccccEEECCCCcccccCCccccC-ccccceeecccccCCCCchHHH-hCCCCCCEEeccCCcccCCCC--CCCCCCCC
Q 039997          139 ILEYMAGLDLSSNELTGDISSEIGD-LRNIHGLNLSHNFLSGSIPESF-SNLKMIESLDLSHNKLNGQIP--QLTELHSL  214 (333)
Q Consensus       139 ~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L  214 (333)
                      .+++|+.|++++ .+++.....+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.++....  ....+++|
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            146788899977 566544444444 7889999999998875544444 668889999999998854332  34457889


Q ss_pred             CEEEcccCcCc
Q 039997          215 SKFDVSYNNLS  225 (333)
Q Consensus       215 ~~L~l~~N~l~  225 (333)
                      +.|++++|+++
T Consensus       509 ~~L~l~~~~~~  519 (594)
T 2p1m_B          509 RSLWMSSCSVS  519 (594)
T ss_dssp             SEEEEESSCCB
T ss_pred             CEEeeeCCCCC
Confidence            99999988874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=4.1e-09  Score=94.36  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=42.1

Q ss_pred             CccccceeecccccCCCCchHHHh---CCCCCCEEeccCCcccCCCC-----CCCCCCCCCEEEcccCcCc
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFS---NLKMIESLDLSHNKLNGQIP-----QLTELHSLSKFDVSYNNLS  225 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~l~~N~l~  225 (333)
                      .+|+|+.|+|++|.+....+..+.   .+++|++|+|+.|.+.....     .+..+++|+.|++++|.++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            467888888888877643333333   46778888888887765321     3345678888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=8.2e-09  Score=83.50  Aligned_cols=61  Identities=11%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             ccccEEECCCCccccc----CCccccCccccceeec--ccccCCCC----chHHHhCCCCCCEEeccCCcc
Q 039997          141 EYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNL--SHNFLSGS----IPESFSNLKMIESLDLSHNKL  201 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~L~~N~l  201 (333)
                      ++|++|+|++|.|+..    ....+...++|++|+|  ++|.|+..    +...+...++|+.|++++|.+
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            4466666666666542    2334444456666666  55666532    123344445566666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.61  E-value=1.8e-08  Score=85.80  Aligned_cols=61  Identities=33%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             ccccEEECCCCcccccC--CccccCccccceeecccccCCCCchHHHhCCC--CCCEEeccCCcccC
Q 039997          141 EYMAGLDLSSNELTGDI--SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLK--MIESLDLSHNKLNG  203 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~  203 (333)
                      +.|+.|+|++|+|+++.  +..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|.+.+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            44555555555555422  34444555566666666655543  1222232  55666666665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.56  E-value=8.6e-07  Score=80.33  Aligned_cols=80  Identities=9%  Similarity=0.071  Sum_probs=63.2

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD  218 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~  218 (333)
                      ..+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..| ++.+.. +|.+..+|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            567888888654 66677788888899999998754 66667788888889999988876 666666 888888899988


Q ss_pred             cccC
Q 039997          219 VSYN  222 (333)
Q Consensus       219 l~~N  222 (333)
                      +..+
T Consensus       373 lp~~  376 (394)
T 4fs7_A          373 LPKR  376 (394)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            8654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=5.9e-08  Score=86.78  Aligned_cols=179  Identities=17%  Similarity=0.123  Sum_probs=104.8

Q ss_pred             CcccEEECCCCcCC---------CCCCccccCCcccceeeccccc-cccccchhhcCCCCCCEEeCCCCcCCCCCCh---
Q 039997            2 SALEILDLRDNYFS---------GRIPYGINEHSNLRALLLKGNY-LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS---   68 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~---------~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~---   68 (333)
                      ++|+.|.+..+...         +.++..+..+++|+.|+|++|. ++ +.+  + .+++|+.|++..+.+......   
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            57899988765432         1233445678999999999884 33 322  3 389999999998887632211   


Q ss_pred             --hhhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEE
Q 039997           69 --CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGL  146 (333)
Q Consensus        69 --~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  146 (333)
                        .+++|+.|++..+..... .....   ...       .                          ..+.+..+++|+.|
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~-~~~~~---~~l-------~--------------------------~~l~~~~~p~Lr~L  257 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYG-FDGDM---NVF-------R--------------------------PLFSKDRFPNLKWL  257 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGT-CCSCG---GGT-------G--------------------------GGSCTTTCTTCCEE
T ss_pred             HccCCCCcEEEEeccccccc-cchhH---HHH-------H--------------------------HHHhcCCCCCcCEE
Confidence              234455555421110000 00000   000       0                          00011115789999


Q ss_pred             ECCCCcccccCCccc---cCccccceeecccccCCCCch----HHHhCCCCCCEEeccCCcccCCCC-CCCC-CCCCCEE
Q 039997          147 DLSSNELTGDISSEI---GDLRNIHGLNLSHNFLSGSIP----ESFSNLKMIESLDLSHNKLNGQIP-QLTE-LHSLSKF  217 (333)
Q Consensus       147 ~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~-~~~~-l~~L~~L  217 (333)
                      +|++|.+....+..+   ..+++|+.|+|+.|.++....    ..+..+++|+.|++++|.++...- .+.. +  ...+
T Consensus       258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~  335 (362)
T 2ra8_A          258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKI  335 (362)
T ss_dssp             EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEE
T ss_pred             eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEE
Confidence            999999875332222   247899999999999885422    233557899999999998764322 2222 1  3457


Q ss_pred             EcccCc
Q 039997          218 DVSYNN  223 (333)
Q Consensus       218 ~l~~N~  223 (333)
                      +++.++
T Consensus       336 ~~~~~~  341 (362)
T 2ra8_A          336 DVSDSQ  341 (362)
T ss_dssp             ECCSBC
T ss_pred             EecCCc
Confidence            777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=8.4e-09  Score=83.44  Aligned_cols=114  Identities=11%  Similarity=0.160  Sum_probs=72.5

Q ss_pred             CcccEEECCCC-cCCCC----CCccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCCCCChhhhc
Q 039997            2 SALEILDLRDN-YFSGR----IPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIPSCITN   72 (333)
Q Consensus         2 ~~L~~L~Ls~N-~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~   72 (333)
                      ++|++|+|++| .|...    +...+...++|++|+|++|.|+..    ....+...++|++|+|++|.|...--..+..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            56777888887 77632    223344557788888888877632    2344555677888888888776311111110


Q ss_pred             cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEEC--CC
Q 039997           73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDL--SS  150 (333)
Q Consensus        73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L--s~  150 (333)
                      .  |.                                                             ...+|++|+|  ++
T Consensus       116 ~--L~-------------------------------------------------------------~n~~L~~L~L~~~~  132 (185)
T 1io0_A          116 A--LQ-------------------------------------------------------------SNTSLIELRIDNQS  132 (185)
T ss_dssp             G--GG-------------------------------------------------------------GCSSCCEEECCCCS
T ss_pred             H--HH-------------------------------------------------------------hCCCceEEEecCCC
Confidence            0  00                                                             0356899999  88


Q ss_pred             CcccccC----CccccCccccceeecccccCC
Q 039997          151 NELTGDI----SSEIGDLRNIHGLNLSHNFLS  178 (333)
Q Consensus       151 n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~  178 (333)
                      |.++...    ...+...++|++|+|++|.+.
T Consensus       133 N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          133 QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            9998543    344455688999999999876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=1.5e-07  Score=80.19  Aligned_cols=78  Identities=22%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             CcccEEECCCCcCCC--CCCccccCCcccceeecccccccccc-chhhcCCCCCCEEeCCCCcCCCCCCh-------hhh
Q 039997            2 SALEILDLRDNYFSG--RIPYGINEHSNLRALLLKGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPS-------CIT   71 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~f~~L~~L~~LdLs~N~l~~~~p~-------~l~   71 (333)
                      ++|+.|+||+|.|++  .+|..+..+++|+.|+|++|+|+++. -+.+.++ +|++|+|++|.+++..|+       .+.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence            578999999999986  34566778999999999999998652 2234444 999999999999865552       244


Q ss_pred             ccccccccC
Q 039997           72 NLLFWKVGN   80 (333)
Q Consensus        72 ~L~~L~~~~   80 (333)
                      .++.|...+
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.33  E-value=2.3e-07  Score=70.20  Aligned_cols=89  Identities=19%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             eeecccccCC--CCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCC
Q 039997          169 GLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN  245 (333)
Q Consensus       169 ~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n  245 (333)
                      .++.+++.++  .++ ..+  .++|+.|+|++|+|+.+.+ .|..+++|+.|+|++|+|.|+|...+...++......  
T Consensus        12 ~v~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~--   86 (130)
T 3rfe_A           12 LVDCGRRGLTWASLP-TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPER--   86 (130)
T ss_dssp             EEECCSSCCCTTTSC-SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCS--
T ss_pred             EEEeCCCCCccccCC-CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccc--
Confidence            5666666665  332 211  2468888888888888777 7888889999999999999999644433333321110  


Q ss_pred             CCCCCCCCCCCCCCCCCcCCC
Q 039997          246 LNLCCPPINKSCTNLPELLET  266 (333)
Q Consensus       246 ~~~c~~~~~~~c~~~~~~~~~  266 (333)
                       .   ......|..|+.+.+.
T Consensus        87 -~---~~~~~~C~~P~~l~g~  103 (130)
T 3rfe_A           87 -A---PYRDLRCVAPPALRGR  103 (130)
T ss_dssp             -G---GGTTCBCCBSTTTTTC
T ss_pred             -c---cccCcEeCcChHHcCC
Confidence             0   0234567777666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.09  E-value=7.7e-06  Score=73.99  Aligned_cols=75  Identities=9%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L  217 (333)
                      +.+|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +....-.|.+..+|+.+
T Consensus       319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            567999999754 77788899999999999999887 77677889999999999999765 33222266666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.07  E-value=1.5e-05  Score=72.15  Aligned_cols=57  Identities=11%  Similarity=0.264  Sum_probs=28.2

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCC
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN  199 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  199 (333)
                      .+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++
T Consensus       311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            34445555432 44444455555555555555432 44344455555555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.05  E-value=1.5e-05  Score=71.60  Aligned_cols=133  Identities=12%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             CCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCccc
Q 039997           17 RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLE   96 (333)
Q Consensus        17 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~   96 (333)
                      .....+....+|+.+.+..+ ++.+...+|.+..+|+.+.+..+ ++.....+|.++                       
T Consensus       208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~-----------------------  262 (379)
T 4h09_A          208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC-----------------------  262 (379)
T ss_dssp             ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-----------------------
T ss_pred             Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee-----------------------
Confidence            45566777888888888765 45577888999999999988765 442223333332                       


Q ss_pred             ccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeeccccc
Q 039997           97 DIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF  176 (333)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  176 (333)
                                                                  ..|+.+.+..+ +..+...+|.++.+|+.+.+.++.
T Consensus       263 --------------------------------------------~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~  297 (379)
T 4h09_A          263 --------------------------------------------TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA  297 (379)
T ss_dssp             --------------------------------------------TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT
T ss_pred             --------------------------------------------ehhcccccccc-ceeccccccccccccccccccccc
Confidence                                                        33444555432 444555566666666666666666


Q ss_pred             CCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcc
Q 039997          177 LSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVS  220 (333)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~  220 (333)
                      ++.+...+|.++.+|+.+++..+ ++.+.. +|.+..+|+.+.+.
T Consensus       298 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          298 IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            66555566666666666666543 444444 56666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.01  E-value=3.3e-05  Score=69.84  Aligned_cols=82  Identities=9%  Similarity=0.212  Sum_probs=65.9

Q ss_pred             hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997          140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD  218 (333)
Q Consensus       140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~  218 (333)
                      ...|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+.. +|.+..+|+.++
T Consensus       287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            4668888886 4566677889999999999999865 66567788999999999999765 666666 888999999999


Q ss_pred             cccCcC
Q 039997          219 VSYNNL  224 (333)
Q Consensus       219 l~~N~l  224 (333)
                      +.++..
T Consensus       364 ~~~~~~  369 (394)
T 4gt6_A          364 YSGSRS  369 (394)
T ss_dssp             ESSCHH
T ss_pred             ECCcee
Confidence            987753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=1.5e-06  Score=68.82  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             CccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCc-CCCCCChhhhccccccccCCccccccccCCCCcccc
Q 039997           19 PYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR-LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLED   97 (333)
Q Consensus        19 ~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~-l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~   97 (333)
                      |....+-..|++||++++.|+...-..+.++++|++|+|+++. |+.   .++..+..+.                    
T Consensus        54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~--------------------  110 (176)
T 3e4g_A           54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQLE--------------------  110 (176)
T ss_dssp             CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHTCH--------------------
T ss_pred             CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHhcc--------------------
Confidence            4433333578888888888876666667888888888888885 542   2333221100                    


Q ss_pred             cccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc-ccccCCccccCccccceeeccccc
Q 039997           98 IYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE-LTGDISSEIGDLRNIHGLNLSHNF  176 (333)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~  176 (333)
                                                              ...++|++|+|++|. ++..--..+.++++|++|+|+++.
T Consensus       111 ----------------------------------------~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          111 ----------------------------------------NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             ----------------------------------------HHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             ----------------------------------------cccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence                                                    002468888888874 775444556677888888888875


Q ss_pred             -CC
Q 039997          177 -LS  178 (333)
Q Consensus       177 -l~  178 (333)
                       ++
T Consensus       151 ~It  153 (176)
T 3e4g_A          151 GVK  153 (176)
T ss_dssp             TCC
T ss_pred             CCC
Confidence             44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=1.1e-06  Score=69.66  Aligned_cols=83  Identities=12%  Similarity=0.120  Sum_probs=65.5

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeeccccc-CCCCchHHHhCC----CCCCEEeccCCc-ccCCCC-CCCCCCC
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNL----KMIESLDLSHNK-LNGQIP-QLTELHS  213 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~-~~~~l~~  213 (333)
                      ..|+.||++++.++...-..+.++++|++|+|+++. ++..--..++.+    ++|++|+++++. ++...- .+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            458999999999987666777899999999999995 764433456654    379999999985 665333 5677899


Q ss_pred             CCEEEcccCc
Q 039997          214 LSKFDVSYNN  223 (333)
Q Consensus       214 L~~L~l~~N~  223 (333)
                      |+.|++++.+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.94  E-value=3.7e-05  Score=69.01  Aligned_cols=80  Identities=11%  Similarity=0.090  Sum_probs=58.9

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV  219 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l  219 (333)
                      ..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+.++.++.+.+ .|.+..+|+.+.+
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            44666667654 55566778888888888888654 554666778888888888888887777777 7888888888888


Q ss_pred             ccC
Q 039997          220 SYN  222 (333)
Q Consensus       220 ~~N  222 (333)
                      ..+
T Consensus       318 p~~  320 (379)
T 4h09_A          318 PTA  320 (379)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            644

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.80  E-value=3.7e-05  Score=57.93  Aligned_cols=57  Identities=23%  Similarity=0.298  Sum_probs=49.1

Q ss_pred             cEEECCCCcCC-CCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC
Q 039997            5 EILDLRDNYFS-GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus         5 ~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      .++|.+++.++ ..+|..+.  ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36889999997 34665554  57999999999999999999999999999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.41  E-value=5.4e-05  Score=61.06  Aligned_cols=38  Identities=8%  Similarity=0.317  Sum_probs=16.8

Q ss_pred             cccceeecccc-cccc----ccchhhcCCCCCCEEeCCCCcCC
Q 039997           26 SNLRALLLKGN-YLQG----PIPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus        26 ~~L~~L~L~~N-~i~~----~~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      +.|++|+|++| +|..    .+.+++..-+.|+.|+|++|.|.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            34555555543 4432    12233444445555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.33  E-value=3.8e-05  Score=61.97  Aligned_cols=63  Identities=11%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             CCcccEEECCCC-cCCCC----CCccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCC
Q 039997            1 DSALEILDLRDN-YFSGR----IPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus         1 ~~~L~~L~Ls~N-~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      ++.|++|+|++| .|...    +...+..-+.|+.|+|++|+|...    +.+.+..-+.|+.|+|++|.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            467999999986 88632    233455568999999999999843    3455667899999999999987

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=89.24  E-value=0.24  Score=28.80  Aligned_cols=17  Identities=12%  Similarity=0.134  Sum_probs=7.0

Q ss_pred             hhhhhHHHHHHHHHHHH
Q 039997          283 YWSFVASCVTVMLGLLA  299 (333)
Q Consensus       283 ~~~~~~~~~~~~~~~~~  299 (333)
                      ..+++.++++++++++.
T Consensus        14 A~gVVgGv~~~~ii~~~   30 (44)
T 2ks1_B           14 ATGMVGALLLLLVVALG   30 (44)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             EeehhHHHHHHHHHHHH
Confidence            34444444444333333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=87.83  E-value=0.53  Score=27.34  Aligned_cols=18  Identities=6%  Similarity=0.050  Sum_probs=7.7

Q ss_pred             hhhhhhHHHHHHHHHHHH
Q 039997          282 LYWSFVASCVTVMLGLLA  299 (333)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~  299 (333)
                      +..+++.++++++++++.
T Consensus        12 IA~gVVgGv~~v~ii~~~   29 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLT   29 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             EEEeehHHHHHHHHHHHH
Confidence            344444444444333333

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=80.04  E-value=1.9  Score=24.98  Aligned_cols=6  Identities=0%  Similarity=0.036  Sum_probs=2.2

Q ss_pred             hhhccc
Q 039997          300 ILWVNP  305 (333)
Q Consensus       300 ~~~~~~  305 (333)
                      ++|.+|
T Consensus        32 ~~~~RR   37 (44)
T 2jwa_A           32 GILIKR   37 (44)
T ss_dssp             HHHHHH
T ss_pred             Hhheeh
Confidence            333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 6e-16
 Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 7   LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 66
           L   +N  S   P GI   +NL  L L GN L+      L  L  L+ +DL++N+++   
Sbjct: 202 LIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 257

Query: 67  P-SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVN 125
           P S +T L   K+G   +  +        L ++    N                      
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN---------------------- 295

Query: 126 FMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESF 185
                  +      L+ +  L L  N ++    S +  L  +  L  ++N +S     S 
Sbjct: 296 ----QLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSL 347

Query: 186 SNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYN 222
           +NL  I  L   HN+++   P L  L  +++  ++  
Sbjct: 348 ANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 5e-08
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 34/200 (17%)

Query: 31  LLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG-SIPSCITNLLFWKVGNGDLYGLVER 89
           L+   N +    P  +     L  + L+ N+L      + +TNL    + N  +  L   
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 259

Query: 90  GRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLS 149
                L ++    N    +S     T   + ++  N +      S               
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN-------------- 305

Query: 150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLT 209
                         L+N+  L L  N +S   P   S+L  ++ L  ++NK++  +  L 
Sbjct: 306 --------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLA 348

Query: 210 ELHSLSKFDVSYNNLSCPIP 229
            L +++     +N +S   P
Sbjct: 349 NLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 5/184 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
             L    +T  +S    DL  +  L      +  SI +    L  +  ++ S+N+L   I
Sbjct: 27  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTD-I 81

Query: 206 PQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLE 265
             L  L  L    ++ N ++   P     +    + +   +    P  N +  N  EL  
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 266 TSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYW 325
            +       S +  +              L  L  L                        
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 326 LFKY 329
           L   
Sbjct: 202 LIAT 205

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 3e-13
 Identities = 46/253 (18%), Positives = 90/253 (35%), Gaps = 2/253 (0%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
             +LDL++N  +           NL  L+L  N +    P     L KL  + LS N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIY-NYYNSTVPLSLDRSDTRTLDTQV 122
                    L   +V   ++  + +   +   + I      + +  S   +       ++
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 123 VVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP 182
               +      +    +   +  L L  N++T   ++ +  L N+  L LS N +S    
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 183 ESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC-PIPDKEQFSTFDESS 241
            S +N   +  L L++NKL      L +   +    +  NN+S     D        + +
Sbjct: 213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272

Query: 242 YRGNLNLCCPPIN 254
               ++L   P+ 
Sbjct: 273 SYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 7/188 (3%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDL +N++T     +  +L+N+H L L +N +S   P +F+ L  +E L LS N      
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN------ 89

Query: 206 PQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLE 265
            QL EL       +    +      K + S F+  +    + L   P+  S         
Sbjct: 90  -QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 266 TSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYW 325
                    +  ++  +      S   + L    I  V+    K      +  +      
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 326 LFKYVIYW 333
                   
Sbjct: 209 AVDNGSLA 216

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.3 bits (160), Expect = 5e-13
 Identities = 53/263 (20%), Positives = 88/263 (33%), Gaps = 9/263 (3%)

Query: 4   LEILDLRDNYFSGR--IPYGINEHSNLRALLLKGNY-LQGPIPHQLCQLRKLSIMDLSHN 60
           +  LDL          IP  +     L  L + G   L GPIP  + +L +L  + ++H 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 61  RLNGSIPSCITNLL----FWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTR 116
            ++G+IP  ++ +          N     L              +  + +  ++  S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 117 TLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF 176
                  +                         S  +    +S +               
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFS 235
                       K +  LDL +N++ G +PQ LT+L  L   +VS+NNL   IP      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 236 TFDESSYRGNLNLCCPPINKSCT 258
            FD S+Y  N  LC  P+  +CT
Sbjct: 292 RFDVSAYANNKCLCGSPL-PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 5/209 (2%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
           + L  L +     SG IP  +++   L  L    N L G +P  +  L  L  +    NR
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 62  LNGSIPS----CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRT 117
           ++G+IP              +    L G +            +   + +           
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 118 LDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
            +TQ +        ++  K  + + + GLDL +N + G +   +  L+ +H LN+S N L
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIP 206
            G IP+   NL+  +    ++NK     P
Sbjct: 281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 6e-08
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 5/187 (2%)

Query: 18  IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWK 77
           +P  +    +   L L  N L       L    +L+ ++L    L          +L   
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 78  VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG 137
             + +    +               +     SL     R L     +            G
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 138 VILEYMAG--LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLD 195
           ++        L L++N LT   +  +  L N+  L L  N L  +IP+ F    ++    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 196 LSHNKLN 202
           L  N   
Sbjct: 202 LHGNPWL 208

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 33/200 (16%), Positives = 54/200 (27%), Gaps = 23/200 (11%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           L  L L         P      + L+ L L+ N LQ         L  L+ + L  NR++
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 64  GSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV 123
                    L    +    L+               N      P +              
Sbjct: 167 SVPERAFRGL--HSLDRLLLH--------------QNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 124 VNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE 183
            N              L+Y   L L+ N    D  +       +     S + +  S+P+
Sbjct: 211 NNLSALPTEALAPLRALQY---LRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 184 SFSNLKMIESLDLSHNKLNG 203
             +   +     L+ N L G
Sbjct: 267 RLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 48/234 (20%), Positives = 71/234 (30%), Gaps = 6/234 (2%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
            + + L  N  S           NL  L L  N L          L  L  +DLS N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 64  GSIPSCITNLLFWKVG---NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDT 120
            S+     + L        +      +  G    L  +   Y     L     DT     
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 121 QVVVNFMTKNRYESYKGVILEYMAGL---DLSSNELTGDISSEIGDLRNIHGLNLSHNFL 177
            +   F+  NR  S        +  L    L  N +         DL  +  L L  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 178 SGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK 231
           S    E+ + L+ ++ L L+ N              L KF  S + + C +P +
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 18  IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWK 77
           +P GI   +  + + L GN +           R L+I+ L  N L     +  T L   +
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 78  VGNGDLYGLVER------GRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR 131
             +      +             L  ++        L             + +       
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 132 YESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMI 191
                   L  +  L L  N ++         L ++  L L  N ++   P +F +L  +
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 192 ESLDLSHN-KLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCC 250
            +L L  N         L  L +L    ++ N   C    +  ++   +     +   C 
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263

Query: 251 PPINKSCTNLPEL 263
            P   +  +L  L
Sbjct: 264 LPQRLAGRDLKRL 276

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 5/172 (2%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDL+   L  D++  +   + +       +F+   + E FS  + ++ +DLS++ +    
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 206 PQ--LTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCCPPINKSCTNLPE 262
               L++   L    +    LS PI +   + S     +  G        +    ++   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 263 LLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYF 314
           L E +     D +   +         +   + L              L    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 14/224 (6%)

Query: 4   LEILDLRDNYFSGR-IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62
           ++ +DL ++      +   +++ S L+ L L+G  L  PI + L +   L  ++LS    
Sbjct: 48  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

Query: 63  NGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQV 122
                         ++   +L    +         + +   +   L+L            
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-------- 159

Query: 123 VVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH-NFLSGSI 181
               + K+   +        +      S  L  D   E   L  +  L+LS    +    
Sbjct: 160 --KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217

Query: 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225
                 +  +++L +     +G +  L E  +L    ++ ++ +
Sbjct: 218 LLELGEIPTLKTLQVFGIVPDGTLQLLKE--ALPHLQINCSHFT 259

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 148 LSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ 207
              N  + +I S      ++  LN+S+N L   +P     L   E L  S N L  ++P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321

Query: 208 LTELHSLSKFDVSYNNLSCPIPD 230
           L    +L +  V YN L    PD
Sbjct: 322 L--PQNLKQLHVEYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 30/169 (17%), Positives = 47/169 (27%), Gaps = 7/169 (4%)

Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL 224
           R  H L L++  LS S+PE   +L   ESL  S N L  ++P+L    SL    V  NNL
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPEL--PQSLKSLLVDNNNL 90

Query: 225 SCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDMVALYW 284
                          S+ +          +       +            S   + A   
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 285 SFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW 333
                     L  L  ++ +    K           +         +  
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 4   LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63
           LE L++ +N     +P        L  L+   N+L   +P     L++L    + +N L 
Sbjct: 286 LEELNVSNNKLI-ELPALP---PRLERLIASFNHLAE-VPELPQNLKQL---HVEYNPLR 337

Query: 64  G--SIPSCITNL 73
               IP  + +L
Sbjct: 338 EFPDIPESVEDL 349

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 170 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP 229
           L+L+H  L+  +      L ++  LDLSHN+L    P L  L  L     S N L     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 230 DKEQFSTFDESSYRGNLNLCCPPINKSCTNLPEL 263
                    +     N  L      +   + P L
Sbjct: 61  VANLP--RLQELLLCNNRLQQSAAIQPLVSCPRL 92

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 25/104 (24%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP---------------------ES 184
           L L+  +LT  +   +  L  +  L+LSHN L    P                     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 185 FSNLKMIESLDLSHNKLNG--QIPQLTELHSLSKFDVSYNNLSC 226
            +NL  ++ L L +N+L     I  L     L   ++  N+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 4e-05
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 146 LDLSSNELTGDISSEIGD-LRNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNK 200
           LD+   EL+    +E+   L+    + L    L+      I  +      +  L+L  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 201 LNGQIPQ 207
           L      
Sbjct: 67  LGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 146 LDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSIPESFS-----NLKMIESLDL 196
           L L+  +++      +++ +    ++  L+LS+N L  +              ++E L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 197 SHNKLNGQIPQL 208
                + ++   
Sbjct: 434 YDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 19/174 (10%), Positives = 47/174 (27%), Gaps = 6/174 (3%)

Query: 166 NIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIPQ-----LTELHSLSKFDV 219
           +I  L++    LS +   E    L+  + + L    L     +     L    +L++ ++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 220 SYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKGPEDESAVDM 279
             N L               S     L+L    +  +   +      +    ++    D 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 280 VALYWSFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYYWLFKYVIYW 333
           +         C  ++     +  +   +  L     E    +         +  
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
           LDL       D+ +          LN   +  + ++     N+  + SL+LS+N+L    
Sbjct: 27  LDLKGLRSDPDLVA----QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLD 81

Query: 206 P---QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKS 256
                + +  +L   ++S N L       +      E  +    +L     ++S
Sbjct: 82  DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 11/197 (5%)

Query: 2   SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
             +  L       +  I  G+   +NL  L LK N +    P +         +  +  +
Sbjct: 41  DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98

Query: 62  LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQ 121
              +I    +                  G         +    T    L         + 
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

Query: 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181
                       +   +            N+++    S +  L N+  ++L +N +S   
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKA-----DDNKISD--ISPLASLPNLIEVHLKNNQISDVS 211

Query: 182 PESFSNLKMIESLDLSH 198
           P   +N   +  + L++
Sbjct: 212 P--LANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.05
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.95
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.2e-26  Score=194.21  Aligned_cols=200  Identities=18%  Similarity=0.113  Sum_probs=145.0

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCC
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNG   81 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n   81 (333)
                      .+.+.|.++++++ .+|..+.  +++++|+|++|+|+++.+++|.++++|++|+|++|+|+...+ ..+.+|+.|++++|
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            4556788888887 4666554  567888888888877777778888888888888888773221 24556777777777


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch---hhhhccccEEECCCCcccccCC
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK---GVILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      .+..........  .       ...                 ...+..+......   ...+.+++.|++++|.++.+.+
T Consensus        88 ~l~~~~~~~~~l--~-------~L~-----------------~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          88 QLQSLPLLGQTL--P-------ALT-----------------VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             CCSSCCCCTTTC--T-------TCC-----------------EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cccccccccccc--c-------ccc-----------------cccccccccceeeccccccccccccccccccccceecc
Confidence            765533221110  0       000                 0011111111111   1116789999999999998888


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCC
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK  231 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  231 (333)
                      ..+..+++++.+++++|++++..+..|+.+++|++|+|++|+|+.+++.+..+++|+.|++++|+|.|.|...
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~  214 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL  214 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGH
T ss_pred             ccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcchH
Confidence            9999999999999999999999889999999999999999999977667778999999999999999999644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3e-25  Score=191.71  Aligned_cols=223  Identities=19%  Similarity=0.169  Sum_probs=157.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCC-CCcCCCCCChhhhc---ccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLS-HNRLNGSIPSCITN---LLFWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs-~N~l~~~~p~~l~~---L~~L~   77 (333)
                      +++++|||++|.|+.+.+.+|.++++|++|++++|++..+.+..+.++..++.++.. .|.++...|..|.+   |+.|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            467888888888886666778888888888888888887777777788888887654 45555444555544   44445


Q ss_pred             ccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCccc
Q 039997           78 VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELT  154 (333)
Q Consensus        78 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~  154 (333)
                      +.+|....+........                         ..+....+..+.+...+..   ...+|+.|++++|+++
T Consensus       112 l~~n~~~~~~~~~~~~~-------------------------~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGL-------------------------AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             CTTSCCCCCCTTTTTTC-------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchh-------------------------cccchhhhccccccccChhHhccccchhhcccccCccc
Confidence            55555443221111000                         0011111222222222111   1567999999999999


Q ss_pred             ccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997          155 GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ  233 (333)
Q Consensus       155 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~  233 (333)
                      ++.+..|.++++|+.+++++|+++++.|..|+.+++|+.||+++|.+.+..+ .+..+++|+.+++++|++.|.|+..+.
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l  246 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL  246 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHH
Confidence            9999999999999999999999998889999999999999999999999888 889999999999999999999975554


Q ss_pred             ccccCccccCCCCCCC
Q 039997          234 FSTFDESSYRGNLNLC  249 (333)
Q Consensus       234 ~~~l~~~~~~~n~~~c  249 (333)
                      ..++++.....+...|
T Consensus       247 ~~~l~~~~~~~~~~~C  262 (284)
T d1ozna_         247 WAWLQKFRGSSSEVPC  262 (284)
T ss_dssp             HHHHHHCCSEECCCBE
T ss_pred             HHHHHhCcCCCCceEe
Confidence            4455554444444433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-24  Score=183.50  Aligned_cols=198  Identities=22%  Similarity=0.175  Sum_probs=151.0

Q ss_pred             cCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccccCCccccccccCCCCcccccc
Q 039997           23 NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVGNGDLYGLVERGRDFDLEDIY   99 (333)
Q Consensus        23 ~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~~n~~~~~~~~~~~~~~~~~~   99 (333)
                      .+...+.+.+.+++.++. +|..+.  +++++|||++|+|++..+..|.   +|+.|++.+|.+..+.......      
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~------   77 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP------   77 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT------
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccc------
Confidence            345667778999999995 454443  5899999999999965555565   5667778888877654321111      


Q ss_pred             cccCCCCCcCCCCCCCCccccceEEEEeeccccccchh--hhhccccEEECCCCcccccCCccccCccccceeecccccC
Q 039997          100 NYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG--VILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFL  177 (333)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  177 (333)
                          ....+.+                 ..+.+.....  ..++.|+.|++++|.+.+..+..+..+.+++.|++++|.+
T Consensus        78 ----~L~~L~L-----------------s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l  136 (266)
T d1p9ag_          78 ----VLGTLDL-----------------SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL  136 (266)
T ss_dssp             ----TCCEEEC-----------------CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred             ----ccccccc-----------------ccccccccccccccccccccccccccccceeecccccccccccccccccccc
Confidence                1111111                 1122111111  1167899999999999988899999999999999999999


Q ss_pred             CCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCC
Q 039997          178 SGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCC  250 (333)
Q Consensus       178 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~  250 (333)
                      +...+..+..+++|+.+++++|+++++.+ .+..+++|+.|++++|.++...+.......++.+.+.+||+.|+
T Consensus       137 ~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            98888999999999999999999999888 88999999999999999995544455677788899999999995

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6.4e-24  Score=185.13  Aligned_cols=248  Identities=18%  Similarity=0.145  Sum_probs=181.8

Q ss_pred             CCcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997            1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN   80 (333)
Q Consensus         1 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~   80 (333)
                      ++++++|||++|.|+.+.+.+|.++++|++|++++|.+..+.|.+|.++++|+.|++++|+++......+..+..|...+
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccc
Confidence            36789999999999976667899999999999999999988899999999999999999999854445556778888888


Q ss_pred             CccccccccCCCCcccc--cccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997           81 GDLYGLVERGRDFDLED--IYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      |.+..+...........  .................+..+. .........+.+..++....++|+.|++++|..++..+
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~-~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCcccccccc-ccCccccccCCccccCcccCCccCEEECCCCcCCCCCh
Confidence            88777543221111111  1111111111111111111111 12233344445555555557889999999999999999


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCC-------
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK-------  231 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------  231 (333)
                      ..|.+++.++.|++++|.+++..+..+.++++|++|+|++|.++.+++.+..+++|+.|++++|.++......       
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchh
Confidence            9999999999999999999988889999999999999999999987668999999999999999998542211       


Q ss_pred             ccccccCccccCCCCCCC
Q 039997          232 EQFSTFDESSYRGNLNLC  249 (333)
Q Consensus       232 ~~~~~l~~~~~~~n~~~c  249 (333)
                      .....+..+++.+|++.+
T Consensus       269 ~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TTSCCCSEEECCSSSSCG
T ss_pred             cccCCCCEEECCCCcCcc
Confidence            123445666778887654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1.1e-24  Score=190.84  Aligned_cols=251  Identities=27%  Similarity=0.399  Sum_probs=175.8

Q ss_pred             cccEEECCCCcCCC--CCCccccCCcccceeeccc-cccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---cc
Q 039997            3 ALEILDLRDNYFSG--RIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FW   76 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L   76 (333)
                      +++.|||++|.+++  .+|..++++++|++|+|++ |++++.+|..|..+++|++|||++|++.+..+..+..+.   .+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            58889999999987  4788999999999999986 788888888999999999999999999877776665544   45


Q ss_pred             cccCCccccccc-cCCC-CcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--hccccEEECCCCc
Q 039997           77 KVGNGDLYGLVE-RGRD-FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--LEYMAGLDLSSNE  152 (333)
Q Consensus        77 ~~~~n~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~Ls~n~  152 (333)
                      +++.|....... .... ..+.......+... ..+ ..................+.+.......  ......++++++.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~-~~i-p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EEC-CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred             ccccccccccCchhhccCcccceeeccccccc-ccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            555555443211 1100 00000000000000 000 0000111111122222222222111111  2345578999999


Q ss_pred             ccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC
Q 039997          153 LTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK  231 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~  231 (333)
                      ..+..|..+..+++++.+++++|.+++.++ .+..+++|+.|++++|++++..| .++.+++|+.|++++|.++|.+|..
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999996654 68889999999999999998777 8999999999999999999999987


Q ss_pred             ccccccCccccCCCCCCCCCCCCCCC
Q 039997          232 EQFSTFDESSYRGNLNLCCPPINKSC  257 (333)
Q Consensus       232 ~~~~~l~~~~~~~n~~~c~~~~~~~c  257 (333)
                      ..+..++..++.+|+.+|+.|.. .|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccCCCCCHHHhCCCccccCCCCC-CC
Confidence            77888999999999999987643 55

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=8.8e-23  Score=165.75  Aligned_cols=182  Identities=22%  Similarity=0.272  Sum_probs=122.6

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeecccccccc-ccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCc
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGD   82 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~   82 (333)
                      .+++|.++++++ .+|..+.  +++++|+|++|+|+. +.+..|.++++|+.|++++|++....+..+..          
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------   76 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------   76 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT----------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc----------
Confidence            357888888888 5676554  578888888888864 55667888888888888888887655555543          


Q ss_pred             cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  162 (333)
                                                                               +.+|++|+|++|+++++.+.+|.
T Consensus        77 ---------------------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~   99 (192)
T d1w8aa_          77 ---------------------------------------------------------ASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSCCCCEECSSSST
T ss_pred             ---------------------------------------------------------ccccceeeeccccccccCHHHHh
Confidence                                                                     35577788888888877788888


Q ss_pred             CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCcccc
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSY  242 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~  242 (333)
                      ++++|++|+|++|+|+++.+++|..+++|++|+|++|.+....+...-...++...+..|.++|..|.  .+....-.++
T Consensus       100 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L  177 (192)
T d1w8aa_         100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDL  177 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST--TTTTSBGGGS
T ss_pred             CCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCCh--hhcCCEeeec
Confidence            88888888888888887777778888888888888887765433111112344555666777666553  2333344455


Q ss_pred             CCCCCCCCCCCCCCC
Q 039997          243 RGNLNLCCPPINKSC  257 (333)
Q Consensus       243 ~~n~~~c~~~~~~~c  257 (333)
                      ..+...|..+....|
T Consensus       178 ~~n~l~C~~~~~~g~  192 (192)
T d1w8aa_         178 PHSEFKCSSENSEGC  192 (192)
T ss_dssp             CTTTCCCCCC---CC
T ss_pred             CHhhCcCCCCCCCCC
Confidence            556666655444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.8e-21  Score=165.70  Aligned_cols=219  Identities=20%  Similarity=0.209  Sum_probs=163.9

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcccccc---cc-C
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWK---VG-N   80 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~---~~-~   80 (333)
                      ..++.++++++ .+|..+.  +++++|+|++|+|+.+.+.+|.++++|++||+++|++....+..+..+..+.   .. .
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            45788999998 6787665  6789999999999988889999999999999999999866665555444332   21 2


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh---hhhccccEEECCCCcccccC
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG---VILEYMAGLDLSSNELTGDI  157 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~  157 (333)
                      +.+..+..                        ..+..+.. +....+..+.......   ....+|+.+++++|.++++.
T Consensus        91 ~~~~~l~~------------------------~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~  145 (284)
T d1ozna_          91 AQLRSVDP------------------------ATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP  145 (284)
T ss_dssp             TTCCCCCT------------------------TTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cccccccc------------------------hhhccccc-CCEEecCCcccccccccccchhcccchhhhccccccccC
Confidence            22222110                        00111111 1111222222222211   12577999999999999888


Q ss_pred             CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-cccc
Q 039997          158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFS  235 (333)
Q Consensus       158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~  235 (333)
                      +..|..+++|+.|++++|+++++.+.+|.++++|+.+++++|.++++.+ .+..+++|+.|++++|.+....+.. ....
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccc
Confidence            8999999999999999999998889999999999999999999999888 9999999999999999998765433 3456


Q ss_pred             ccCccccCCCCCCCCC
Q 039997          236 TFDESSYRGNLNLCCP  251 (333)
Q Consensus       236 ~l~~~~~~~n~~~c~~  251 (333)
                      .++.+.+.+|++.|+.
T Consensus       226 ~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         226 ALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TCCEEECCSSCEECSG
T ss_pred             ccCEEEecCCCCCCCc
Confidence            6788889999999853

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=6e-22  Score=173.13  Aligned_cols=224  Identities=25%  Similarity=0.362  Sum_probs=159.7

Q ss_pred             CcccEEECCC-CcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---ccc
Q 039997            2 SALEILDLRD-NYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FWK   77 (333)
Q Consensus         2 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L~   77 (333)
                      ++|++|||++ |.++|.+|..|+++++|++|+|++|++.++.+..+..+.+|+.+++++|.+...+|..+.+++   .++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            6899999997 899999999999999999999999999999999999999999999999999988898887665   555


Q ss_pred             ccCCcccccc-ccCCCCcccccccccCCCCCc-CCCCCCCCccccceEEEEeeccccccchhh--hhccccEEECCCCcc
Q 039997           78 VGNGDLYGLV-ERGRDFDLEDIYNYYNSTVPL-SLDRSDTRTLDTQVVVNFMTKNRYESYKGV--ILEYMAGLDLSSNEL  153 (333)
Q Consensus        78 ~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~Ls~n~l  153 (333)
                      +.+|.+.+.. ....... ............+ ......+.... ...............+..  .+.+++.+++++|.+
T Consensus       156 l~~n~l~~~ip~~~~~l~-~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFS-KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             CCSSCCEEECCGGGGCCC-TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            5666665421 1111110 0000000000000 00000011111 111111111111111111  167899999999999


Q ss_pred             cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997          154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      .+.++ .+..+++|+.|+|++|++++.+|..++.+++|++|+|++|+++|..|.+..+.+|+.+++++|+..|..
T Consensus       234 ~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         234 AFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             ccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCC
Confidence            86654 678889999999999999998999999999999999999999988887788999999999999865543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=6.7e-21  Score=154.47  Aligned_cols=157  Identities=20%  Similarity=0.277  Sum_probs=129.4

Q ss_pred             ccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCC-ChhhhccccccccCCccccccccCCCCcccccccccCCC
Q 039997           27 NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI-PSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNST  105 (333)
Q Consensus        27 ~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~-p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~  105 (333)
                      ..++++.++++++.+ |..+.  +++++|+|++|+|+..+ +..|.+                                 
T Consensus         9 ~~~~v~Cs~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~---------------------------------   52 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGR---------------------------------   52 (192)
T ss_dssp             ETTEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGG---------------------------------
T ss_pred             cCCEEEEeCCCcCcc-CCCCC--CCCCEEEeCCCCCcccccccccCC---------------------------------
Confidence            346789999999954 44332  68999999999997544 333433                                 


Q ss_pred             CCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHH
Q 039997          106 VPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESF  185 (333)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  185 (333)
                                                        +++|+.|+|++|++....+..|..+++|+.|+|++|+|+++.+.+|
T Consensus        53 ----------------------------------l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F   98 (192)
T d1w8aa_          53 ----------------------------------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF   98 (192)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred             ----------------------------------CceEeeeeccccccccccccccccccccceeeeccccccccCHHHH
Confidence                                              4678899999999999999999999999999999999999889999


Q ss_pred             hCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997          186 SNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI  253 (333)
Q Consensus       186 ~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~  253 (333)
                      +++++|+.|+|++|+|+++.+ .|..+++|+++++++|++.|.|+..+...++.......+...|..|.
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             hCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCCh
Confidence            999999999999999999988 89999999999999999999986554444555555566666665544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=1.4e-18  Score=150.94  Aligned_cols=232  Identities=16%  Similarity=0.186  Sum_probs=164.7

Q ss_pred             ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcc---ccccccC
Q 039997            4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNL---LFWKVGN   80 (333)
Q Consensus         4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L---~~L~~~~   80 (333)
                      .+++|-++++++ .+|..+.  +++++|+|++|+|+.+.+.+|.++++|++|++++|++....|..|.++   +.|++.+
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            567899999999 6787775  689999999999998888899999999999999999997777766555   5777788


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccc-------cccchhhhhccccEEECCCCcc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR-------YESYKGVILEYMAGLDLSSNEL  153 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~L~~L~Ls~n~l  153 (333)
                      |.+..++...... ........+....+  ....+......... ....+.       ...+.+  +++|+.+++++|++
T Consensus        89 n~l~~l~~~~~~~-l~~L~~~~n~l~~l--~~~~~~~~~~~~~l-~~~~n~~~~~~~~~~~~~~--l~~L~~l~l~~n~l  162 (305)
T d1xkua_          89 NQLKELPEKMPKT-LQELRVHENEITKV--RKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG--MKKLSYIRIADTNI  162 (305)
T ss_dssp             SCCSBCCSSCCTT-CCEEECCSSCCCBB--CHHHHTTCTTCCEE-ECCSSCCCGGGBCTTGGGG--CTTCCEEECCSSCC
T ss_pred             CccCcCccchhhh-hhhhhccccchhhh--hhhhhhcccccccc-ccccccccccCCCcccccc--ccccCccccccCCc
Confidence            8877665432211 11111111111110  00000000111111 111111       111212  67899999999999


Q ss_pred             cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997          154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE  232 (333)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~  232 (333)
                      +......   +++|+.|++++|.++...+..|.+++.+++|++++|.+++..+ .+.++++|+.|++++|.++...+...
T Consensus       163 ~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~  239 (305)
T d1xkua_         163 TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA  239 (305)
T ss_dssp             CSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTT
T ss_pred             cccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            8543332   5789999999999998888999999999999999999999888 88999999999999999986644445


Q ss_pred             cccccCccccCCCCC
Q 039997          233 QFSTFDESSYRGNLN  247 (333)
Q Consensus       233 ~~~~l~~~~~~~n~~  247 (333)
                      .+..++.+++.+|..
T Consensus       240 ~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         240 DHKYIQVVYLHNNNI  254 (305)
T ss_dssp             TCSSCCEEECCSSCC
T ss_pred             cccCCCEEECCCCcc
Confidence            677888888888754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.7e-18  Score=142.63  Aligned_cols=183  Identities=17%  Similarity=0.228  Sum_probs=118.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhcccccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVG   79 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~   79 (333)
                      .+|+.|++++|.|+. + ..+..+++|++|++++|+|+++.|  |..+++|+.+++++|.++ .++  ..+.+|+.+.+.
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLT  115 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECT
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccccccccccccccccc
Confidence            368889999999884 4 358889999999999999886654  788899999999998887 333  123344444555


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch-hhhhccccEEECCCCcccccCC
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK-GVILEYMAGLDLSSNELTGDIS  158 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~  158 (333)
                      ++................                           ............ ....++|+.|++++|.+.+.. 
T Consensus       116 ~~~~~~~~~~~~~~~~~~---------------------------l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-  167 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQV---------------------------LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-  167 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCE---------------------------EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             cccccccchhccccchhh---------------------------hhchhhhhchhhhhccccccccccccccccccch-
Confidence            544433221111100000                           001111111111 111567888888888876433 


Q ss_pred             ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEccc
Q 039997          159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSY  221 (333)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~  221 (333)
                       .++++++|+.|+|++|+++++.  .++.+++|+.|++++|+++.+.+ +.++++|+.|++++
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             -hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence             3778888888888888888653  27788888888888888886543 67788888888863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.3e-18  Score=139.66  Aligned_cols=160  Identities=21%  Similarity=0.350  Sum_probs=109.1

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---cccccccc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVG   79 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~   79 (333)
                      +|++|++++|.|+.. + .+..+++|++|++++|+|+++.+  +..+++|+.|++++|+++. +| .+.   +|+.|++.
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-cccccccccccccc
Confidence            578889999988843 3 47788899999999998886553  6788899999999998873 33 233   33344444


Q ss_pred             CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997           80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      ++....+..                                              +.+  ++.++.+++++|.+++  +.
T Consensus       121 ~~~~~~~~~----------------------------------------------l~~--l~~l~~l~~~~n~l~~--~~  150 (210)
T d1h6ta2         121 HNGISDING----------------------------------------------LVH--LPQLESLYLGNNKITD--IT  150 (210)
T ss_dssp             TSCCCCCGG----------------------------------------------GGG--CTTCCEEECCSSCCCC--CG
T ss_pred             ccccccccc----------------------------------------------ccc--cccccccccccccccc--cc
Confidence            433322100                                              000  4567778888887764  23


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEccc
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSY  221 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~  221 (333)
                      .+..+++|+.+++++|++++..+  ++.+++|+.|++++|.++.+ +.+.++++|+.|++++
T Consensus       151 ~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCC-hhhcCCCCCCEEEccC
Confidence            45667788888888888875432  67778888888888887754 3577777888887764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=9.6e-18  Score=149.78  Aligned_cols=80  Identities=21%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~   80 (333)
                      .+|++|+++++.|+..  ..++.+++|++|+|++|+|+++.+  |.++++|++|++++|++....| ..+.+|+.|++.+
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~  119 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  119 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccccccccccccccccc
Confidence            3688899999888843  357788889999999998886653  8888999999999998874332 2345555666665


Q ss_pred             Ccccc
Q 039997           81 GDLYG   85 (333)
Q Consensus        81 n~~~~   85 (333)
                      +...+
T Consensus       120 ~~~~~  124 (384)
T d2omza2         120 NQITD  124 (384)
T ss_dssp             SCCCC
T ss_pred             ccccc
Confidence            55443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=8.1e-18  Score=136.81  Aligned_cols=146  Identities=27%  Similarity=0.392  Sum_probs=93.5

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGD   82 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~   82 (333)
                      ++++|++++|.|+. + ..++.+++|++|++++|+++++.|  +.++++|++|++++|.+.. ++ .+.+          
T Consensus        41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~----------  104 (199)
T d2omxa2          41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLAN----------  104 (199)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTT----------
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccc----------
Confidence            56667777776663 2 235666677777777776665443  6666777777777666652 22 1221          


Q ss_pred             cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997           83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  162 (333)
                                                                               ++.|+.|++++|.+...  ..+.
T Consensus       105 ---------------------------------------------------------l~~L~~L~l~~~~~~~~--~~~~  125 (199)
T d2omxa2         105 ---------------------------------------------------------LTNLTGLTLFNNQITDI--DPLK  125 (199)
T ss_dssp             ---------------------------------------------------------CTTCSEEECCSSCCCCC--GGGT
T ss_pred             ---------------------------------------------------------ccccccccccccccccc--cccc
Confidence                                                                     35567777777776543  3466


Q ss_pred             CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  226 (333)
                      ++++|+.|++++|+++.. + .+..+++|+.|++++|+++++. .+.++++|+.|++++|+++.
T Consensus       126 ~l~~L~~L~l~~n~l~~~-~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         126 NLTNLNRLELSSNTISDI-S-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             TCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhHHhhhhhhhhccc-c-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCC
Confidence            777777777777777643 2 4667777777777777777543 36677777777777777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.3e-17  Score=148.93  Aligned_cols=185  Identities=25%  Similarity=0.337  Sum_probs=127.7

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN   80 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~   80 (333)
                      ++++.+++++|.+++..|  +...++|++|++++|+++.+  +.+..+++|+.|++++|.+++..+ ....+++.|++.+
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  272 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA  272 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCcccccccCCEeeccC
Confidence            567889999999986543  46678999999999999853  367889999999999999885433 2345666777777


Q ss_pred             CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch-hhhhccccEEECCCCcccccCCc
Q 039997           81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK-GVILEYMAGLDLSSNELTGDISS  159 (333)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~  159 (333)
                      +.+.++............                           ....+.+..+. ...+++++.|++++|++++..  
T Consensus       273 ~~l~~~~~~~~~~~l~~l---------------------------~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--  323 (384)
T d2omza2         273 NQISNISPLAGLTALTNL---------------------------ELNENQLEDISPISNLKNLTYLTLYFNNISDIS--  323 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEE---------------------------ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--
T ss_pred             cccCCCCccccccccccc---------------------------cccccccccccccchhcccCeEECCCCCCCCCc--
Confidence            776654332211111110                           01111111111 111567888888888888654  


Q ss_pred             cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccC
Q 039997          160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYN  222 (333)
Q Consensus       160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N  222 (333)
                      .+..+++|+.|++++|+++++ + .++.+++|+.|++++|+++++.+ +.++++|+.|++++|
T Consensus       324 ~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            377788888888888888854 3 47888888888888888887655 677888888888877

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.6e-18  Score=140.81  Aligned_cols=194  Identities=14%  Similarity=0.055  Sum_probs=103.9

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccccccc-ccchhhcCCCCCCEEeCCC-CcCCCCCChhhh---ccccc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSH-NRLNGSIPSCIT---NLLFW   76 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~f~~L~~L~~LdLs~-N~l~~~~p~~l~---~L~~L   76 (333)
                      +++++|||++|.|+.+.+.+|.++++|++|++++|.+.. +.+++|.++++++.+++.. |.+....+..|.   +++.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            356667777777765445566667777777777776653 3445666677777766543 455544444443   34444


Q ss_pred             cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh----hccccEEECCCCc
Q 039997           77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI----LEYMAGLDLSSNE  152 (333)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~L~~L~Ls~n~  152 (333)
                      .+.++.+.........                       ..+ ...............+....    ...++.|++++|+
T Consensus       109 ~l~~~~l~~~~~~~~~-----------------------~~l-~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKI-----------------------HSL-QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             EEESCCCCSCCCCTTT-----------------------CBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccchhhhccccccccc-----------------------ccc-cccccccccccccccccccccccccccceeeeccccc
Confidence            4444444332111100                       000 00111111111111111000    2356677777777


Q ss_pred             ccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997          153 LTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV  219 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l  219 (333)
                      ++.+.+..|....-.+.+++++|+++.+.+..|.++++|+.|++++|+++.+++ .+.++++|+.+++
T Consensus       165 l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         165 IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            776666555443333444567777776666677777788888888887776666 5666665655554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.9e-17  Score=128.71  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=94.8

Q ss_pred             cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCccccccc
Q 039997           21 GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN  100 (333)
Q Consensus        21 ~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~  100 (333)
                      .|.+...+++|+|++|+|+.+ ++.+..+++|+.||+++|+|+.. + .+..                            
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~----------------------------   61 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPL----------------------------   61 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCC----------------------------
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-Cccc----------------------------
Confidence            456677888888888888855 55667788888888888888722 1 1211                            


Q ss_pred             ccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCC
Q 039997          101 YYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS  180 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  180 (333)
                                                             +++|++|++++|+++.+.+..+..+++|++|++++|+++..
T Consensus        62 ---------------------------------------l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~  102 (162)
T d1a9na_          62 ---------------------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL  102 (162)
T ss_dssp             ---------------------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred             ---------------------------------------CcchhhhhcccccccCCCccccccccccccceecccccccc
Confidence                                                   46678888888888877777777888888888888888754


Q ss_pred             ch-HHHhCCCCCCEEeccCCcccCCCC----CCCCCCCCCEEE
Q 039997          181 IP-ESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFD  218 (333)
Q Consensus       181 ~~-~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~  218 (333)
                      .. ..+..+++|+.|++++|.++..+.    .+..+++|+.||
T Consensus       103 ~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         103 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            32 467788888888888888876553    366778888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.8e-16  Score=127.49  Aligned_cols=161  Identities=19%  Similarity=0.284  Sum_probs=126.4

Q ss_pred             EECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccc
Q 039997            7 LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGL   86 (333)
Q Consensus         7 L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~   86 (333)
                      .+++.+.+++..  ....+.++++|++++|.|+.+.  .+..+++|++|++++|++++..|  +.+              
T Consensus        23 ~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~--------------   82 (199)
T d2omxa2          23 TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKN--------------   82 (199)
T ss_dssp             HHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTT--------------
T ss_pred             HHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccC--------------
Confidence            457777777543  3356789999999999998653  47889999999999999874321  332              


Q ss_pred             cccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccc
Q 039997           87 VERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRN  166 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  166 (333)
                                                                           +++|++|++++|.+....  .+.++++
T Consensus        83 -----------------------------------------------------l~~L~~L~l~~n~~~~~~--~l~~l~~  107 (199)
T d2omxa2          83 -----------------------------------------------------LTKLVDILMNNNQIADIT--PLANLTN  107 (199)
T ss_dssp             -----------------------------------------------------CTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred             -----------------------------------------------------Cccccccccccccccccc--ccccccc
Confidence                                                                 467899999999987543  4889999


Q ss_pred             cceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCC
Q 039997          167 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNL  246 (333)
Q Consensus       167 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~  246 (333)
                      |+.|++++|.+....  .+..+++|+.|++++|++..+ +.+..+++++.+++.+|.++... ....+..++.+++.+|.
T Consensus       108 L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         108 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccc--ccchhhhhHHhhhhhhhhccc-ccccccccccccccccccccCCc-cccCCCCCCEEECCCCC
Confidence            999999999998653  478899999999999998754 46788999999999999987543 33456677788888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.9e-16  Score=117.14  Aligned_cols=118  Identities=23%  Similarity=0.269  Sum_probs=82.1

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccc
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLY   84 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~   84 (333)
                      |+|||++|.|+ .++ .+.++++|++|++++|+|+. .|+.|..+++|+.|++++|.|+. +| .+.+            
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~------------   63 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVAN------------   63 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTT------------
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-cccc------------
Confidence            57888999888 444 47888888888888888884 45568888888888888888873 22 2222            


Q ss_pred             cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC-ccccC
Q 039997           85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-SEIGD  163 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~  163 (333)
                                                                             +++|+.|++++|++++... ..+..
T Consensus        64 -------------------------------------------------------l~~L~~L~l~~N~i~~~~~~~~l~~   88 (124)
T d1dcea3          64 -------------------------------------------------------LPRLQELLLCNNRLQQSAAIQPLVS   88 (124)
T ss_dssp             -------------------------------------------------------CSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             -------------------------------------------------------ccccCeEECCCCccCCCCCchhhcC
Confidence                                                                   3567778888888775543 45677


Q ss_pred             ccccceeecccccCCCC---chHHHhCCCCCCEE
Q 039997          164 LRNIHGLNLSHNFLSGS---IPESFSNLKMIESL  194 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L  194 (333)
                      +++|+.|++++|.++..   .......+|+|+.+
T Consensus        89 ~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          89 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77777777777777532   23344455666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.2e-17  Score=127.26  Aligned_cols=124  Identities=18%  Similarity=0.108  Sum_probs=74.8

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      .++++|||++|+|+. ++..+..+++|++|+|++|+|+.+.  .|..+++|++|++++|+++...+..+..         
T Consensus        18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~---------   85 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQA---------   85 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHH---------
T ss_pred             CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccc---------
Confidence            356677777777763 4555566677777777777776442  3666777777777777766332222222         


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC-cc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-SE  160 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~  160 (333)
                                                                                +++|+.|++++|+++.... ..
T Consensus        86 ----------------------------------------------------------l~~L~~L~L~~N~i~~~~~l~~  107 (162)
T d1a9na_          86 ----------------------------------------------------------LPDLTELILTNNSLVELGDLDP  107 (162)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSCCCCCGGGGGG
T ss_pred             ----------------------------------------------------------ccccccceeccccccccccccc
Confidence                                                                      3456667777777664332 35


Q ss_pred             ccCccccceeecccccCCCCc---hHHHhCCCCCCEEe
Q 039997          161 IGDLRNIHGLNLSHNFLSGSI---PESFSNLKMIESLD  195 (333)
Q Consensus       161 ~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~  195 (333)
                      +..+++|++|++++|.++...   +..+..+++|+.||
T Consensus       108 l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         108 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666677777777777665432   23466667777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=5.1e-16  Score=127.04  Aligned_cols=163  Identities=18%  Similarity=0.283  Sum_probs=123.8

Q ss_pred             EECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCcccc
Q 039997            7 LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGDLYG   85 (333)
Q Consensus         7 L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~~~~   85 (333)
                      .+++.+.+++.++.  ..+.+|++|++++|.|+.+.+  +..+++|++|++++|++++..+ ..+.+|+.|++.+|.+..
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccccccCccccccccccccccc
Confidence            35667777755443  467899999999999986543  7889999999999999985432 224556666777766654


Q ss_pred             ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCcc
Q 039997           86 LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLR  165 (333)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  165 (333)
                      +.....                                                +++|+.|++++|.+...  ..+.+++
T Consensus       105 l~~l~~------------------------------------------------l~~L~~L~l~~~~~~~~--~~l~~l~  134 (210)
T d1h6ta2         105 LSSLKD------------------------------------------------LKKLKSLSLEHNGISDI--NGLVHLP  134 (210)
T ss_dssp             GGGGTT------------------------------------------------CTTCCEEECTTSCCCCC--GGGGGCT
T ss_pred             cccccc------------------------------------------------ccccccccccccccccc--ccccccc
Confidence            321100                                                57799999999988743  4578889


Q ss_pred             ccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997          166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC  226 (333)
Q Consensus       166 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~  226 (333)
                      +++.+++++|.++..  ..+..+++|+.+++++|+++++. .+.++++|+.|++++|.++.
T Consensus       135 ~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccccccccc--ccccccccccccccccccccccc-cccCCCCCCEEECCCCCCCC
Confidence            999999999999854  34678899999999999998754 47788999999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=5.3e-16  Score=115.73  Aligned_cols=62  Identities=23%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCC
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQ  204 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  204 (333)
                      ++|+.|++++|.+++. + .+..+++|++|++++|+|+.... ..+..+++|+.|++++|.++..
T Consensus        43 ~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          43 RCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             TTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             hccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            4566677777777643 2 36666777777777777664432 4566666677777777666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=8.7e-16  Score=127.19  Aligned_cols=186  Identities=17%  Similarity=0.196  Sum_probs=131.0

Q ss_pred             EEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCccc
Q 039997            6 ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGDLY   84 (333)
Q Consensus         6 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~~~   84 (333)
                      .++++.+.+++..  .++++.+|+.|++.+|.|+.+ + .+..+++|++|++++|+++...| ..+.+++.+.+.+|...
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccccccccccccccccccccc
Confidence            3577888888643  667889999999999999966 3 48999999999999999985433 34455666666666665


Q ss_pred             cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCCccccC
Q 039997           85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDISSEIGD  163 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~  163 (333)
                      .+........+.          .+.+.                 ........+ .....++.+.++++.+...  ..+..
T Consensus        99 ~i~~l~~l~~L~----------~l~l~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~  149 (227)
T d1h6ua2          99 NVSAIAGLQSIK----------TLDLT-----------------STQITDVTPLAGLSNLQVLYLDLNQITNI--SPLAG  149 (227)
T ss_dssp             CCGGGTTCTTCC----------EEECT-----------------TSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred             cccccccccccc----------ccccc-----------------cccccccchhccccchhhhhchhhhhchh--hhhcc
Confidence            543211111111          01111                 111111111 1156788899998888743  34677


Q ss_pred             ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      .++|+.|++++|.++...  .++.+++|+.|++++|+++++. .++++++|+.|++++|+++..
T Consensus       150 ~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             ccccccccccccccccch--hhcccccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCCCC
Confidence            889999999999998553  3888999999999999998754 477889999999999998754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.2e-15  Score=117.04  Aligned_cols=90  Identities=21%  Similarity=0.217  Sum_probs=78.7

Q ss_pred             hccccEEECCCC-cccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEE
Q 039997          140 LEYMAGLDLSSN-ELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKF  217 (333)
Q Consensus       140 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L  217 (333)
                      +++|+.|++++| .++.+.+.+|.++++|+.|+|++|+|+++.+.+|..+++|+.|+|++|+++.+++ .+. ..+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccccc
Confidence            356788999766 4888888899999999999999999998889999999999999999999998888 554 4579999


Q ss_pred             EcccCcCcccCCC
Q 039997          218 DVSYNNLSCPIPD  230 (333)
Q Consensus       218 ~l~~N~l~~~~~~  230 (333)
                      ++++|+|.|.|..
T Consensus       109 ~L~~Np~~C~C~~  121 (156)
T d2ifga3         109 VLSGNPLHCSCAL  121 (156)
T ss_dssp             ECCSSCCCCCGGG
T ss_pred             ccCCCcccCCchH
Confidence            9999999999943

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=1.1e-13  Score=121.17  Aligned_cols=76  Identities=22%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCc
Q 039997            3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGD   82 (333)
Q Consensus         3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~   82 (333)
                      ++++|||++|.++ .+|+.   .++|++|+|++|+|+.+ |+.   +.+|+.|++++|+++ .++.....++.|++.+|.
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~-~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-CCCSCCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccc-hhhhhccccccccccccc
Confidence            5778888888887 46653   46788888888888744 433   356777777777766 334333456666666666


Q ss_pred             ccccc
Q 039997           83 LYGLV   87 (333)
Q Consensus        83 ~~~~~   87 (333)
                      +..++
T Consensus       110 l~~lp  114 (353)
T d1jl5a_         110 LEKLP  114 (353)
T ss_dssp             CSSCC
T ss_pred             ccccc
Confidence            65544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.56  E-value=7.1e-17  Score=130.83  Aligned_cols=142  Identities=22%  Similarity=0.268  Sum_probs=90.6

Q ss_pred             ccEEECCCC--cCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997            4 LEILDLRDN--YFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG   81 (333)
Q Consensus         4 L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n   81 (333)
                      ++.++++++  .++ .++.++..+++|++|+|++|+|+.+.  .+.++++|+.|++++|.++ .+|..+..         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccc-cccccccc---------
Confidence            344555543  233 34566777777778888877777542  3677777788888777776 33321111         


Q ss_pred             ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997           82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  161 (333)
                                                                                .+.|+.|++++|+++.+  ..+
T Consensus        92 ----------------------------------------------------------~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          92 ----------------------------------------------------------ADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             ----------------------------------------------------------HHHCCEEECSEEECCCH--HHH
T ss_pred             ----------------------------------------------------------ccccccccccccccccc--ccc
Confidence                                                                      34577788888877743  246


Q ss_pred             cCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCCCC-C----------CCCCCCCCEEE
Q 039997          162 GDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIP-Q----------LTELHSLSKFD  218 (333)
Q Consensus       162 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~----------~~~l~~L~~L~  218 (333)
                      ..+++|+.|++++|+|+.... ..++.+++|+.|++++|.+....+ .          +..+++|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            677778888888888774432 457777778888888877654333 1          34566777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-14  Score=120.66  Aligned_cols=196  Identities=13%  Similarity=0.060  Sum_probs=130.7

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccc---cccccC
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLL---FWKVGN   80 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~---~L~~~~   80 (333)
                      +.++.++++++ .+|..+.  +++++|++++|+|+.+.+.+|.++++|++|++++|.+...++ ..|.+++   .+.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            57888999998 6776654  589999999999998888899999999999999999875443 3454443   333322


Q ss_pred             -CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh----hhccccEEECCCCcccc
Q 039997           81 -GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV----ILEYMAGLDLSSNELTG  155 (333)
Q Consensus        81 -n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~Ls~n~l~~  155 (333)
                       |.+......                        .+..+. .+....+..+.+...+..    .+..+..+..+++.+..
T Consensus        88 ~n~l~~~~~~------------------------~~~~l~-~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          88 ANNLLYINPE------------------------AFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             CTTCCEECTT------------------------SEECCT-TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             cccccccccc------------------------cccccc-cccccccchhhhccccccccccccccccccccccccccc
Confidence             222221110                        000000 111111222222222111    13455566677888887


Q ss_pred             cCCccccCcc-ccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccC
Q 039997          156 DISSEIGDLR-NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPI  228 (333)
Q Consensus       156 ~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~  228 (333)
                      +.+..|.+++ .++.|++++|+++.+.+..|....-++.+++++|.++.+++ .|.++++|+.|++++|.++...
T Consensus       143 i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         143 IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             ccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            7788888775 78999999999997666665443333445678889998877 7899999999999999998543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.8e-14  Score=109.32  Aligned_cols=66  Identities=17%  Similarity=0.080  Sum_probs=39.6

Q ss_pred             cEEECCCCcCCCCCCccccCCcccceeecccc-ccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh
Q 039997            5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGN-YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT   71 (333)
Q Consensus         5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~   71 (333)
                      +.++.+++.+. ..|..+.++++|++|++++| .|+.+.+++|.++++|+.|++++|+|+...|.+|.
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   77 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH   77 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc
Confidence            45666666665 45556666666666666544 36656666666666666666666666644444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.40  E-value=5.8e-12  Score=110.01  Aligned_cols=58  Identities=28%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997          163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~  227 (333)
                      .+++|++|+|++|+|+.+ |.   .+++|+.|++++|+|+.++..   +.+|+.|++++|+++..
T Consensus       282 ~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC
T ss_pred             cCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCC
Confidence            357899999999999954 43   468999999999999965543   45799999999999854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=1.5e-14  Score=116.83  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=104.5

Q ss_pred             cccceeecccc--ccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccC
Q 039997           26 SNLRALLLKGN--YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN  103 (333)
Q Consensus        26 ~~L~~L~L~~N--~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~  103 (333)
                      ..++.++++++  .++ ..+.++..+++|++|+|++|+|+. ++ .+..                               
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~-------------------------------   68 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSG-------------------------------   68 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHH-------------------------------
T ss_pred             cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccC-------------------------------
Confidence            34566677665  243 456789999999999999999983 33 2433                               


Q ss_pred             CCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchH
Q 039997          104 STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE  183 (333)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  183 (333)
                                                          +++|+.|++++|.++. .+..+..+++|+.|++++|+++.+  .
T Consensus        69 ------------------------------------l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~  109 (198)
T d1m9la_          69 ------------------------------------MENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--S  109 (198)
T ss_dssp             ------------------------------------HTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--H
T ss_pred             ------------------------------------CccccChhhccccccc-cccccccccccccccccccccccc--c
Confidence                                                5778999999999984 455556667899999999999954  3


Q ss_pred             HHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCcccCCC
Q 039997          184 SFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCPIPD  230 (333)
Q Consensus       184 ~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~  230 (333)
                      .+..+++|+.|++++|+++.+..  .+..+++|+.|++++|++....+.
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            47889999999999999987654  688999999999999998765443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.1e-14  Score=118.78  Aligned_cols=177  Identities=20%  Similarity=0.208  Sum_probs=108.2

Q ss_pred             CcccEEECCCCcCCCC-CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCC-cCCCCC----Chhhhcccc
Q 039997            2 SALEILDLRDNYFSGR-IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN-RLNGSI----PSCITNLLF   75 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N-~l~~~~----p~~l~~L~~   75 (333)
                      .+|++||++++.++.. ++..+.++++|++|+++++.+++..+..+..+++|++|+++++ .++...    .....+|+.
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4677888888777632 3445667788888888888777666677777888888888774 444110    112233444


Q ss_pred             ccccCCc-cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCC--c
Q 039997           76 WKVGNGD-LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSN--E  152 (333)
Q Consensus        76 L~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~  152 (333)
                      |++++.. +..                                            ...........+.|+.|+++++  .
T Consensus       126 L~ls~c~~~~~--------------------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2         126 LNLSWCFDFTE--------------------------------------------KHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             EECCCCTTCCH--------------------------------------------HHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             ccccccccccc--------------------------------------------ccchhhhcccccccchhhhcccccc
Confidence            4443211 100                                            0000000001356888888865  3


Q ss_pred             cccc-CCccccCccccceeecccc-cCCCCchHHHhCCCCCCEEeccCC-cccCCCC-CCCCCCCCCEEEcccC
Q 039997          153 LTGD-ISSEIGDLRNIHGLNLSHN-FLSGSIPESFSNLKMIESLDLSHN-KLNGQIP-QLTELHSLSKFDVSYN  222 (333)
Q Consensus       153 l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~l~~L~~L~l~~N  222 (333)
                      ++.. ....+.++++|++|++++| .+++.....+..+++|++|+++++ .++.... .++.+++|+.|+++++
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4322 2233456788888998886 466556667778888899998884 5655444 6677888888888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=1.6e-11  Score=107.39  Aligned_cols=62  Identities=19%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             CcccEEECCCCcCCCCC----------CccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCC
Q 039997            2 SALEILDLRDNYFSGRI----------PYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~----------~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      ++|+.++++++......          ...+...++|++|+|++|.++..    ....+...++|+.|++++|.+.
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            67889999987665221          12245678899999999998754    3345567899999999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.5e-11  Score=103.35  Aligned_cols=155  Identities=19%  Similarity=0.160  Sum_probs=106.2

Q ss_pred             CcccEEECCCCcCCCCCCccccCCcccceeecccc-ccccc-cchhhcCCCCCCEEeCCCC-cCCCC-CChhh----hcc
Q 039997            2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGN-YLQGP-IPHQLCQLRKLSIMDLSHN-RLNGS-IPSCI----TNL   73 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~f~~L~~L~~LdLs~N-~l~~~-~p~~l----~~L   73 (333)
                      ++|++|+|+++.+++..+..+..+++|++|+++++ .++.. ....+.++++|++|+++++ .++.. .+..+    ..+
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            58999999999998777788889999999999994 56532 2333567899999999986 34311 11111    233


Q ss_pred             ccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCC-c
Q 039997           74 LFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSN-E  152 (333)
Q Consensus        74 ~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~  152 (333)
                      +.|++.+....-                                          ....+..+. ..+++|++|++++| .
T Consensus       151 ~~L~l~~~~~~i------------------------------------------~~~~l~~l~-~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         151 TQLNLSGYRKNL------------------------------------------QKSDLSTLV-RRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             CEEECCSCGGGS------------------------------------------CHHHHHHHH-HHCTTCSEEECTTCTT
T ss_pred             chhhhccccccc------------------------------------------ccccccccc-cccccccccccccccC
Confidence            344332210000                                          000000000 01578999999986 5


Q ss_pred             ccccCCccccCccccceeecccc-cCCCCchHHHhCCCCCCEEeccCC
Q 039997          153 LTGDISSEIGDLRNIHGLNLSHN-FLSGSIPESFSNLKMIESLDLSHN  199 (333)
Q Consensus       153 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  199 (333)
                      +++.....+..+++|++|+++++ .+++.....++.+++|+.|+++++
T Consensus       188 itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77777778889999999999995 677666667888999999999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=1.3e-10  Score=101.62  Aligned_cols=233  Identities=14%  Similarity=0.145  Sum_probs=136.6

Q ss_pred             CCcccEEECCCCcCCCC----CCccccCCcccceeeccccccccc----------cchhhcCCCCCCEEeCCCCcCCCCC
Q 039997            1 DSALEILDLRDNYFSGR----IPYGINEHSNLRALLLKGNYLQGP----------IPHQLCQLRKLSIMDLSHNRLNGSI   66 (333)
Q Consensus         1 ~~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~----------~~~~f~~L~~L~~LdLs~N~l~~~~   66 (333)
                      +++|++|+|++|.|...    +...+...++|+.++++++.....          ....+...++|+.||+++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            35789999999998643    233466778999999998765422          1234567899999999999987542


Q ss_pred             Chh-------hhccccccccCCccccccccCCCCcccccc--cccCCCCCcCCCCCCCCccccceEEEEeecccc-----
Q 039997           67 PSC-------ITNLLFWKVGNGDLYGLVERGRDFDLEDIY--NYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRY-----  132 (333)
Q Consensus        67 p~~-------l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  132 (333)
                      ...       ..+|+.|.+.+|.+.......-........  .......              .........+.+     
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~--------------~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP--------------PLRSIICGRNRLENGSM  175 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--------------CCCEEECCSSCCTGGGH
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCc--------------ccceeeccccccccccc
Confidence            222       235666777666543210000000000000  0000000              000111111111     


Q ss_pred             ccchhh--hhccccEEECCCCccccc-----CCccccCccccceeecccccCCCC----chHHHhCCCCCCEEeccCCcc
Q 039997          133 ESYKGV--ILEYMAGLDLSSNELTGD-----ISSEIGDLRNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKL  201 (333)
Q Consensus       133 ~~~~~~--~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l  201 (333)
                      ..+...  ....|+.|++++|.++..     ....+...++|+.|+|++|.++..    ....+...++|++|++++|.+
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            111111  156799999999998742     334567788999999999998633    334567889999999999998


Q ss_pred             cCCCC-----CC--CCCCCCCEEEcccCcCcccC-----CCC-ccccccCccccCCCCC
Q 039997          202 NGQIP-----QL--TELHSLSKFDVSYNNLSCPI-----PDK-EQFSTFDESSYRGNLN  247 (333)
Q Consensus       202 ~~~~~-----~~--~~l~~L~~L~l~~N~l~~~~-----~~~-~~~~~l~~~~~~~n~~  247 (333)
                      +....     .+  ...+.|+.|++++|.+...-     ... .....++.+++.+|..
T Consensus       256 ~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            75322     12  23467999999999886321     000 1233456666777655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-10  Score=88.56  Aligned_cols=61  Identities=31%  Similarity=0.193  Sum_probs=26.1

Q ss_pred             ccEEECCCCcccccC--CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccC
Q 039997          143 MAGLDLSSNELTGDI--SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG  203 (333)
Q Consensus       143 L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  203 (333)
                      |++|+|++|+|+...  +..+..+++|+.|+|++|.|+...+..+.....|+.|++++|.+..
T Consensus        67 L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          67 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            444444444444322  1223344455555555555543333233333344555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.9e-10  Score=101.53  Aligned_cols=182  Identities=18%  Similarity=0.111  Sum_probs=112.4

Q ss_pred             CcccEEECCCCcCCCC-----CCccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCCCCChhh--
Q 039997            2 SALEILDLRDNYFSGR-----IPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIPSCI--   70 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~-----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~~~p~~l--   70 (333)
                      +.++.+++++|.+...     .+..+....+++.+++++|.+...    ....+...+.++.+++++|.++......+  
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            4678899999887522     233344567899999999988633    23345678999999999998863211111  


Q ss_pred             ------hccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh--hhhcc
Q 039997           71 ------TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG--VILEY  142 (333)
Q Consensus        71 ------~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~  142 (333)
                            ..++.+.+.++.+...                                            ....+..  ....+
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~--------------------------------------------~~~~l~~~~~~~~~  341 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAA--------------------------------------------CCSHFSSVLAQNRF  341 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGG--------------------------------------------GHHHHHHHHHHCSS
T ss_pred             cccccccccccccccccchhhh--------------------------------------------hhhhcccccccccc
Confidence                  1222222222222110                                            0000000  01357


Q ss_pred             ccEEECCCCcccccC----Cccc-cCccccceeecccccCCCC----chHHHhCCCCCCEEeccCCcccCCCC-----CC
Q 039997          143 MAGLDLSSNELTGDI----SSEI-GDLRNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQIP-----QL  208 (333)
Q Consensus       143 L~~L~Ls~n~l~~~~----~~~~-~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~  208 (333)
                      |++|+|++|++++..    +..+ ...+.|+.|+|++|.|+..    +...+...++|++||+++|.++....     .+
T Consensus       342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  421 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH
Confidence            899999999987432    2222 2456799999999998743    33456677899999999998864221     12


Q ss_pred             C-CCCCCCEEEcccCcCccc
Q 039997          209 T-ELHSLSKFDVSYNNLSCP  227 (333)
Q Consensus       209 ~-~l~~L~~L~l~~N~l~~~  227 (333)
                      . .-..|+.+++.+|.+...
T Consensus       422 ~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         422 RQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             TSTTCCCCEEECTTCCCCHH
T ss_pred             HhCCCccCEEECCCCCCCHH
Confidence            2 234689999999888743

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=9.3e-10  Score=85.17  Aligned_cols=38  Identities=29%  Similarity=0.204  Sum_probs=17.8

Q ss_pred             ccccEEECCCCcccccCCccccCccccceeecccccCC
Q 039997          141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS  178 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  178 (333)
                      ++|+.|+|++|.|+...+-.+....+|+.|++++|.+.
T Consensus        91 ~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          91 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34455555555555433322223334555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.7e-09  Score=97.26  Aligned_cols=62  Identities=18%  Similarity=0.118  Sum_probs=51.0

Q ss_pred             CcccEEECCCCcCCCCC-CccccCCcccceeecccccccc----ccchhhcCCCCCCEEeCCCCcCC
Q 039997            2 SALEILDLRDNYFSGRI-PYGINEHSNLRALLLKGNYLQG----PIPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus         2 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~L~~N~i~~----~~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      .+|++||+++|+|++.. ...+..++++++|+|++|.|+.    .++..+...++|++|||++|+|+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            47999999999998432 3446678999999999999873    33566789999999999999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=3.5e-06  Score=64.76  Aligned_cols=59  Identities=14%  Similarity=0.058  Sum_probs=31.1

Q ss_pred             ccccEEECCCCcccccC----CccccCccccceeecccccCCCC-------chHHHhCCCCCCEEeccCC
Q 039997          141 EYMAGLDLSSNELTGDI----SSEIGDLRNIHGLNLSHNFLSGS-------IPESFSNLKMIESLDLSHN  199 (333)
Q Consensus       141 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~N  199 (333)
                      +.|+.|+|++|.++...    ..++..-++|++|++++|.+...       +...+...++|+.|+++.+
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            44666666666665321    12334445666666666655432       2233444556666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.78  E-value=2.7e-06  Score=65.40  Aligned_cols=64  Identities=11%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             CCcccEEECCCC-cCCCC----CCccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCC
Q 039997            1 DSALEILDLRDN-YFSGR----IPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNG   64 (333)
Q Consensus         1 ~~~L~~L~Ls~N-~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~   64 (333)
                      +++|++|+|+++ .|+..    +-..+...++|++|+|++|.++..    ....+...+.|+.|++++|.++.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            368999999974 56532    222455668899999999998732    33456677899999999998873

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.32  E-value=4.5e-05  Score=58.18  Aligned_cols=41  Identities=17%  Similarity=0.196  Sum_probs=25.9

Q ss_pred             cCCcccceeeccc-cccccc----cchhhcCCCCCCEEeCCCCcCC
Q 039997           23 NEHSNLRALLLKG-NYLQGP----IPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus        23 ~~l~~L~~L~L~~-N~i~~~----~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      .+.++|++|+|++ +.|+..    ...++...++|++|++++|.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            3456777777776 445421    2344556777888888877765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=3e-05  Score=59.19  Aligned_cols=63  Identities=14%  Similarity=0.241  Sum_probs=47.9

Q ss_pred             CCcccEEECCC-CcCCCC----CCccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCC
Q 039997            1 DSALEILDLRD-NYFSGR----IPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLN   63 (333)
Q Consensus         1 ~~~L~~L~Ls~-N~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~   63 (333)
                      +++|++|+|++ +.|+..    +-..+...++|++|++++|.++..    ....+...++++.+++++|.++
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            37899999998 567622    223456789999999999998743    2345677899999999998876