Citrus Sinensis ID: 040047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MEYKHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNSDSAKPEPNSAAYQKEESASGSSQQNQTERTEIEDPVLEAQLELQRLQLEMQMAQELAKMMSSF
Secondary Structure (PSIPRED)
ccEEccccccccEEEEEccccccccccccccccccEEEcccccccccHHHHcccccccccccccccEEEcccccccccccccccccccccccEEEEccccEEEcccccccccccccccccccEEEEcccccccccccccEEccccccccccccccEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEccccccccEEEccccccccEEccccccccccEEEEEcEcEEEEHHHccccccccccccccccEEEEcccccccccEEEccccccccccEEEEcccEEEEEEEcccccccEEcccccccEEEEcccccccccccccEEEcEEEEEccccccEEEEEccccEEEEEHHccccccccccccccccccEEEEEcccccccccccHHHcccccccEEEEEEEEEEEEHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meykhfshphnlriyqvqhgneyscsACELIIsgsaygcweckfflheqcgnasramqhtshpmhhltlvptttysagnflcnacgepgsafsfccplcdfdlhvqcaflpeilihdshfhslnlsyalpaahhyesssyvcdichkqldqkcfwsyncfacnfhahvsctrnrnnsdsakpepnsaayqkeesasgssqqnqterteiedPVLEAQLELQRLQLEMQMAQELAKMMSSF
Flexible Loop (DISEMBL)
meykhfshphnLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNSDSAKPEPNSAAYqkeesasgssqqnqtERTEIEDPVLEAQLELQRLQLEMQMAQELAKMMSSF
Low Complexity Region (SEG)
MEYKHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNSDSAKPEPNSAAYQKEESASGSSQQNQTERTEIEDPVleaqlelqrlqlemqmaqelaKMMSSF
Disordered region (IsUnstruct)
*********HNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCT*********************************************************************
Disordered Region (DISOPRED)
MEYKHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNS***************************************QLELQRLQLEMQMAQELAKMMS**
Disordered Region (DISEMBL)
********PHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCT*************************************IEDPVLEAQLELQRLQLEMQMAQELAKMMSSF
Disordered Region (DISPRO)
MEYKHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNSDSAKPEPNSAAYQKEESASGSSQQNQTERTEIEDPVLEAQLELQRLQLEMQMAQELAKMMSSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYKHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNSDSAKPEPNSAAYQKEESASGSSQQNQTERTEIEDPxxxxxxxxxxxxxxxxxxxxxAKMMSSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q7Y0E8	569	Probable nucleoredoxin 1-	no	no	0.212	0.089	0.428	0.0001

>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 57  MQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPE 112
           ++H  H  H L L   TTY      C+ C E GS++S+ C  CDFDLH +CA   E
Sbjct: 494 LKHELHDEHELVLTRCTTYG-----CDGCDEMGSSWSYRCRECDFDLHPKCALGKE 544

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
225441471	252	PREDICTED: uncharacterized protein LOC10	0.987	0.940	0.530	2e-68
297824165	268	hypothetical protein ARALYDRAFT_483291 [	0.987	0.884	0.509	1e-52
15227497	268	cysteine/histidine-rich C1 domain-contai	0.991	0.888	0.511	3e-52
449437906	253	PREDICTED: uncharacterized protein LOC10	0.958	0.909	0.411	3e-49
255562176	240	protein binding protein, putative [Ricin	0.95	0.95	0.394	2e-36
15224871	247	cysteine/histidine-rich C1 domain-contai	0.891	0.866	0.327	1e-31
359487465	226	PREDICTED: uncharacterized protein LOC10	0.912	0.969	0.356	3e-31
224120914	190	predicted protein [Populus trichocarpa]	0.691	0.873	0.435	2e-30
224118064	326	predicted protein [Populus trichocarpa]	0.7	0.515	0.431	3e-30
255542235	187	protein binding protein, putative [Ricin	0.687	0.882	0.429	3e-29

>gi|225441471|ref|XP_002275658.1| PREDICTED: uncharacterized protein LOC100258837 [Vitis vinifera]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 169/249 (67%), Gaps = 12/249 (4%)

Query: 1   MEYKHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHT 60
           MEYKHF+H HNL I+++Q GN   CS C  + S SAY CW+C FFLH +CGNA+RAM+H 
Sbjct: 1   MEYKHFNHEHNLAIFELQAGNGIHCSGCRTLCSNSAYACWKCDFFLHLECGNANRAMEHP 60

Query: 61  SHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHF 120
           SH +HHLTLVP  TYSAG+F+CNACG PGS+FS+CC LC+FDLH++CA LP I+ H +H 
Sbjct: 61  SHELHHLTLVPYPTYSAGSFVCNACGAPGSSFSYCCSLCEFDLHIRCALLPAIISHRAHP 120

Query: 121 HSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCT--------- 171
           H L+L+Y L       S    CDICHK +D K FW+Y+C  C F  H SC          
Sbjct: 121 HELSLTYGLGPQAKVSSPPNACDICHKLVDNK-FWTYSCGPCKFQLHTSCATPEMVPISY 179

Query: 172 RNRNNSDSAKPEPNSAAYQKEESASGSSQQNQTERTEIEDPVLEAQLELQRLQLEMQMAQ 231
           +    S +A  E     Y KEE+ SGSS QN ++  E+EDPVL  QLEL RLQ E++++ 
Sbjct: 180 QADGVSGNAAVEAGPGFY-KEENGSGSS-QNGSKPAEVEDPVLATQLELMRLQQELELSN 237

Query: 232 ELAKMMSSF 240
           +LAKMM+S+
Sbjct: 238 QLAKMMASY 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824165|ref|XP_002879965.1| hypothetical protein ARALYDRAFT_483291 [Arabidopsis lyrata subsp. lyrata] gi|297325804|gb|EFH56224.1| hypothetical protein ARALYDRAFT_483291 [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 168/265 (63%), Gaps = 28/265 (10%)

Query: 1   MEYKHFSHPHNLRIYQVQ-HGNEYS---CSACELIISGS--AYGCWECKFFLHEQCGNAS 54
           MEYKHFSHPH+L++ Q+Q HG+  S   CS CE  IS S  AY C  C F LHEQCGNA 
Sbjct: 1   MEYKHFSHPHSLKLQQIQPHGSSDSLVICSGCESAISDSETAYICSTCDFNLHEQCGNAV 60

Query: 55  RAMQHTSHP-MHHLTLVPTTTYSAGNFLCNACG-EPGSAFSFCCPLCDFDLHVQCAFLPE 112
           R M H SH  +HHLTLVP TTYSAG FLC ACG   G  FS+CCPLCDFDLHVQCA LP+
Sbjct: 61  RGMLHPSHAGLHHLTLVPYTTYSAGIFLCRACGCTGGKGFSYCCPLCDFDLHVQCAHLPQ 120

Query: 113 ILIHDSH-FHSLNLSY----ALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAH 167
           +L+H+SH  HSL L Y    A+P      ++ +VC++C+  +D + FWSYNC+ACN+H H
Sbjct: 121 VLVHESHPLHSLLLVYNSAPAMPFTQFGYANQFVCNLCNMAMDGR-FWSYNCYACNYHIH 179

Query: 168 VSCTRNR-----------NNSDSAK-PEPNSAAYQKEESASGSSQQNQTERTEIEDPVLE 215
            SC  N+             SD  K P P S   Q  E+    ++Q      ++EDP L 
Sbjct: 180 ASCAVNKPKPVAPSAEKCGTSDEGKIPTPESLPVQGLETE--QTEQVAATTEQVEDPALR 237

Query: 216 AQLELQRLQLEMQMAQELAKMMSSF 240
            QLELQ+LQLE+ M+  +A M+ SF
Sbjct: 238 QQLELQKLQLELDMSSAIANMIGSF 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227497|ref|NP_181736.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gi|1871178|gb|AAB63538.1| unknown protein [Arabidopsis thaliana] gi|38566670|gb|AAR24225.1| At2g42060 [Arabidopsis thaliana] gi|46931262|gb|AAT06435.1| At2g42060 [Arabidopsis thaliana] gi|330254972|gb|AEC10066.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/264 (51%), Positives = 167/264 (63%), Gaps = 26/264 (9%)

Query: 1   MEYKHFSHPHNLRIYQVQ----HGNEYSCSACELIISGS--AYGCWECKFFLHEQCGNAS 54
           MEYKHFSHPH L++ Q+Q      +   CS CE  IS S  AY C  C F LHEQCGNA 
Sbjct: 1   MEYKHFSHPHTLKLQQIQPHKSSDSSVICSGCESAISESETAYICSTCDFNLHEQCGNAV 60

Query: 55  RAMQHTSHP-MHHLTLVPTTTYSAGNFLCNACG-EPGSAFSFCCPLCDFDLHVQCAFLPE 112
           R MQH SH  +HHLTLVP TTYSAG FLC ACG   G  FS+CCPLCDFDLHVQCA LP+
Sbjct: 61  RGMQHPSHAGLHHLTLVPYTTYSAGTFLCRACGCTGGKGFSYCCPLCDFDLHVQCAHLPQ 120

Query: 113 ILIHDSH-FHSLNLSYALPAAHHYESSSY----VCDICHKQLDQKCFWSYNCFACNFHAH 167
           +L+H+SH  HSL L Y       +    +    VC++C+  +D + FWSYNC+ACN+H H
Sbjct: 121 VLVHESHPMHSLLLVYNSTPPMSFTQFGFGNQLVCNLCNMTMDGR-FWSYNCYACNYHIH 179

Query: 168 VSCTRNRNNSDSAKPEPNSAAYQKEESASGSS---QQNQTERTE--------IEDPVLEA 216
            SC  N+ N  +A  E N  A  + ++ +  S   Q  +TE+TE        +EDPVL  
Sbjct: 180 ASCAVNKPNPVAASAE-NCGASDEGKTPTAESVPVQGLETEQTEQVAAITEQVEDPVLRQ 238

Query: 217 QLELQRLQLEMQMAQELAKMMSSF 240
           QLELQ+LQLE+ M+  LA M+ SF
Sbjct: 239 QLELQKLQLELDMSSALANMIGSF 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437906|ref|XP_004136731.1| PREDICTED: uncharacterized protein LOC101202742 [Cucumis sativus] gi|449511350|ref|XP_004163933.1| PREDICTED: uncharacterized LOC101202742 [Cucumis sativus]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/253 (41%), Positives = 144/253 (56%), Gaps = 23/253 (9%)

Query: 2   EYKHFSHPHNLRIYQVQH---GNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQ 58
           EYKHFSH H+L++YQ+Q      ++ CS C  +  G  YGC  C+FFLHE C  A R++Q
Sbjct: 3   EYKHFSHLHDLKLYQIQEDQTNQQFRCSGCYSLCHGLVYGCQSCEFFLHEACATAPRSLQ 62

Query: 59  HTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDS 118
           H SHP HHLTL+P+ TY  G+FLCNACG  GS+F F C  CD DLHV C  LP+ L  +S
Sbjct: 63  HPSHPSHHLTLLPSPTYPDGSFLCNACGATGSSFCFSCIPCDIDLHVDCGLLPQQLDLES 122

Query: 119 HFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRN----- 173
           H H+L+L ++ P++        +C++C + +D + +WSY+C  CNF  H  C        
Sbjct: 123 HRHTLSLLFSPPSS--------ICNLCRRAIDSR-YWSYSCSTCNFDIHTYCATTPTAPP 173

Query: 174 ----RNNSDSAKPEPNSAAYQKEESAS--GSSQQNQTERTEIEDPVLEAQLELQRLQLEM 227
               RN+     P  +   Y         G +         + DP L+AQ EL  LQ++M
Sbjct: 174 VGGMRNDRHLQFPAVDQEDYDSVSPVDRYGGATTVNPRDGVVVDPFLQAQAELHELQMQM 233

Query: 228 QMAQELAKMMSSF 240
           Q+  E+AKMM+S 
Sbjct: 234 QIVNEMAKMMASV 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562176|ref|XP_002522096.1| protein binding protein, putative [Ricinus communis] gi|223538695|gb|EEF40296.1| protein binding protein, putative [Ricinus communis]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 134/246 (54%), Gaps = 18/246 (7%)

Query: 1   MEYKHFSHPHNLRIYQVQHG--NEYSCSACELIISGS--AYGCWECKFFLHEQCGNASRA 56
           MEY+HFSH H L  +        E  C AC  +I  +  ++GC  CK FLH+QC N  R 
Sbjct: 1   MEYQHFSHKHFLIPHHFNDDVDQEIKCKACNRLIIATEPSHGCLSCKHFLHDQCLNLPRW 60

Query: 57  MQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP-GSAFSFCCPLCDFDLHVQCAFLPEILI 115
           +QH SH  H LTL+P  TY  G++ CNACG P GS+FSF C  C+FDLH  CA LP  ++
Sbjct: 61  LQHPSHHSHTLTLLPAPTYPCGSYSCNACGIPGGSSFSFSCAQCEFDLHTNCATLPSTVL 120

Query: 116 HDSHFHSLNLSYA-LPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174
            D+H H L L++   P+  +    S VCD+C  +L  K FW Y C  C F  H++C +  
Sbjct: 121 IDAHSHELTLTFDNFPSDGNI---SIVCDVC-NELVNKSFWMYKCVGCGFDCHLNCVK-- 174

Query: 175 NNSDSAKPEPNSAAYQKEESASGSSQQNQTERT--EIEDPVLEAQLELQRLQLEMQMAQE 232
                A   P     Q+ + A G S+ N T  +  +    ++E Q E+ R+Q E+  A+ 
Sbjct: 175 -TDQQAGLNP---MQQETQEAGGQSRANDTMDSIRQATSQMIEDQFEIMRMQNELTRARI 230

Query: 233 LAKMMS 238
           LA  M+
Sbjct: 231 LANFMT 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224871|ref|NP_181966.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gi|3128201|gb|AAC16105.1| unknown protein [Arabidopsis thaliana] gi|37202108|gb|AAQ89669.1| At2g44380 [Arabidopsis thaliana] gi|51971661|dbj|BAD44495.1| unknown protein [Arabidopsis thaliana] gi|330255320|gb|AEC10414.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 18/232 (7%)

Query: 4   KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCW--ECKFFLHEQCGNASRAMQHTS 61
           +H SH H LR+++ +  +E  CS CEL ++G A+ C   +C +FLH+ C +  R   H S
Sbjct: 13  RHASHNHPLRVFKARDEDEVVCSGCELELTGQAFKCMKSDCDYFLHKSCFDLPRETNHKS 72

Query: 62  HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
           HP H LTL+ +  Y   ++ C+ACGE GS F++ C  C +D+HV CAF+PE +  + H H
Sbjct: 73  HPNHSLTLLHSPPYGQ-SYTCDACGEYGSGFTYNCSECQYDVHVGCAFIPETVEREDHEH 131

Query: 122 SLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHV-SCTRNRNNSDSA 180
            L L Y  P     + + ++CD+C +++ +   W Y C  C++  HV SC    ++    
Sbjct: 132 PLTLLYNTPCKGREDGAKFICDVCEEKMSEN-LWVYYCKECDYGTHVHSCAVYEDH---- 186

Query: 181 KPEPNSAAYQKEESASGSSQQNQTERTEIEDPVLEAQLELQRLQLEMQMAQE 232
           + E      ++ E++S  S+            +++AQ E+  LQLE ++  +
Sbjct: 187 ESEKRGGGREEGEASSAVSRMKS---------LMKAQDEMAALQLEARIRND 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487465|ref|XP_003633597.1| PREDICTED: uncharacterized protein LOC100853056 [Vitis vinifera]

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 22/241 (9%)

Query: 1   MEYKHFSHPHNLRIYQVQHGNEYSCSACE-LIISGSAYGCWECKFFLHEQCGNASRAMQH 59
           M Y++F+H H L   ++  G E +C AC+ LI   + YGC  CK++LH++C N  R ++H
Sbjct: 1   MSYQYFNHSHLLLSLRLDEGEEINCKACDRLIAEQTFYGCIACKYYLHDRCLNLPRWIKH 60

Query: 60  TSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSH 119
            SHP H LTL+P  TY +G+F CNACG   ++FS  C  C+FDLH+ C+ LP  ++ D+H
Sbjct: 61  PSHPSHSLTLLPAPTYPSGSFSCNACGSAANSFSKSCAECEFDLHLHCSSLPSTVLLDAH 120

Query: 120 FHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSC-TRNRNNSD 178
            H L L++  P    Y+             D+K  W Y C  C+F  H+ C T       
Sbjct: 121 PHELKLTFESP----YD-------------DEK--WVYYCAECDFGTHLECATAAIEQPG 161

Query: 179 SAKPEPNSAAYQKE-ESASGSSQQNQTERTEIEDPVLEAQLELQRLQLEMQMAQELAKMM 237
             +P     A Q + +   GS         ++ D ++E QLE+ RLQ EM   +  A++M
Sbjct: 162 MEEPASGEVADQSQTDQPCGSDDGANNPFKQVVDEMMENQLEMMRLQNEMNRTRMFAQLM 221

Query: 238 S 238
           +
Sbjct: 222 T 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120914|ref|XP_002330857.1| predicted protein [Populus trichocarpa] gi|222872679|gb|EEF09810.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 98/170 (57%), Gaps = 4/170 (2%)

Query: 4   KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWE--CKFFLHEQCGNASRAMQHTS 61
           KHFSH H LR   V+   E  CS CEL +SGSAY C +  C FFLH+ C    R ++HTS
Sbjct: 18  KHFSHSHPLRPVDVKEEEESICSGCELDLSGSAYKCTKSTCDFFLHKSCFELPRELEHTS 77

Query: 62  HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
           HP H L L+ +       F CNACG+ G++F++ C  C F+LHV CAFLP+ + H  H H
Sbjct: 78  HPQHLLVLLSSPPGDDSKFTCNACGDYGTSFAYHCATCQFNLHVGCAFLPKTMKHVDHNH 137

Query: 122 SLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCT 171
            L LSY+       E   + CD+C K++ Q   W Y C  C++   + CT
Sbjct: 138 PLTLSYSTNFLDK-EGLVFTCDVCRKEVSQT-SWVYYCLDCDYGTDLHCT 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118064|ref|XP_002317723.1| predicted protein [Populus trichocarpa] gi|222858396|gb|EEE95943.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 93/174 (53%), Gaps = 6/174 (3%)

Query: 4   KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHP 63
            HFSHPH L +   Q     SCSAC L  SG  Y C  C F LH  C      + H  HP
Sbjct: 11  NHFSHPHPLELSNAQSLYMNSCSACNLQPSGWMYSCKPCNFTLHISCTQMPTLITHPCHP 70

Query: 64  MHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSL 123
           +H LTL  T  Y  G+F C+ CG  G+ F++ C  CDFD+H+ CA  P  L H SH H L
Sbjct: 71  IHPLTLFSTPVYPGGSFNCDGCGLQGNGFNYHCTTCDFDVHMMCATNPLSLAHQSHPHQL 130

Query: 124 NLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNS 177
           NL++  P    Y++  + CDICHK       W Y C AC F AH+ C  + NN+
Sbjct: 131 NLAFYPP----YQTKGFSCDICHKIGSNH--WLYRCSACEFDAHMKCAMSVNNT 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542235|ref|XP_002512181.1| protein binding protein, putative [Ricinus communis] gi|223548725|gb|EEF50215.1| protein binding protein, putative [Ricinus communis]

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 5/170 (2%)

Query: 4   KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCWE--CKFFLHEQCGNASRAMQHTS 61
           KHFSH H LR   V+   E  C  CEL +SGSAY C +  C F LH+ C    + +QH S
Sbjct: 17  KHFSHSHPLRPADVKEDEEIICFGCELDLSGSAYKCSKSKCVFLLHKSCFELPKELQHDS 76

Query: 62  HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
           H  H LTL+P+       F CNACG+ G+AF++ C +C F+LHV CAFLP+ + H  H H
Sbjct: 77  HSEHLLTLLPSPPQDDSKFTCNACGDYGTAFAYHCAVCRFNLHVGCAFLPKNIKHVDHSH 136

Query: 122 SLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCT 171
            L L Y+  +     S+S+ CD C K++ Q  +W Y C  C++   ++CT
Sbjct: 137 PLTLFYS--SLMERGSTSFTCDACRKKVSQG-YWIYYCPECDYGTDLACT 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2064551	268	AT2G42060 [Arabidopsis thalian	0.879	0.787	0.514	6.8e-56
TAIR|locus:2050477	247	AT2G44380 [Arabidopsis thalian	0.837	0.813	0.333	3.1e-35
TAIR|locus:2062804	248	AT2G28270 [Arabidopsis thalian	0.854	0.826	0.334	1.4e-32
TAIR|locus:2041996	718	AT2G27660 [Arabidopsis thalian	0.725	0.242	0.396	2.8e-32
TAIR|locus:2050589	250	AT2G44370 [Arabidopsis thalian	0.833	0.8	0.314	6.9e-31
TAIR|locus:2168728	234	AT5G40590 [Arabidopsis thalian	0.820	0.841	0.344	8.8e-31
TAIR|locus:2827948	248	AT2G17740 [Arabidopsis thalian	0.679	0.657	0.370	8.8e-31
TAIR|locus:2158347	250	AT5G43520 [Arabidopsis thalian	0.854	0.82	0.309	2.7e-29
TAIR|locus:2132338	822	AT4G02540 [Arabidopsis thalian	0.662	0.193	0.357	2.7e-20
TAIR|locus:2028937	700	AT1G66450 "AT1G66450" [Arabido	0.662	0.227	0.375	3.3e-20

TAIR|locus:2064551 AT2G42060 [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 122/237 (51%), Positives = 151/237 (63%)

Query:     1 MEYKHFSHPHNLRIYQVQ-HGNEYS---CSACELIISGS--AYGCWECKFFLHEQCGNAS 54
             MEYKHFSHPH L++ Q+Q H +  S   CS CE  IS S  AY C  C F LHEQCGNA 
Sbjct:     1 MEYKHFSHPHTLKLQQIQPHKSSDSSVICSGCESAISESETAYICSTCDFNLHEQCGNAV 60

Query:    55 RAMQHTSHP-MHHLTLVPTTTYSAGNFLCNACG-EPGSAFSFCCPLCDFDLHVQCAFLPE 112
             R MQH SH  +HHLTLVP TTYSAG FLC ACG   G  FS+CCPLCDFDLHVQCA LP+
Sbjct:    61 RGMQHPSHAGLHHLTLVPYTTYSAGTFLCRACGCTGGKGFSYCCPLCDFDLHVQCAHLPQ 120

Query:   113 ILIHDSH-FHSLNLSY-ALPAAHHYE---SSSYVCDICHKQLDQKCFWSYNCFACNFHAH 167
             +L+H+SH  HSL L Y + P     +    +  VC++C+  +D + FWSYNC+ACN+H H
Sbjct:   121 VLVHESHPMHSLLLVYNSTPPMSFTQFGFGNQLVCNLCNMTMDGR-FWSYNCYACNYHIH 179

Query:   168 VSCTRNRNNSDSAKPEPNSAAYQKEESASGSS---QQNQTERTE--------IEDPV 213
              SC  N+ N  +A  E N  A  + ++ +  S   Q  +TE+TE        +EDPV
Sbjct:   180 ASCAVNKPNPVAASAE-NCGASDEGKTPTAESVPVQGLETEQTEQVAAITEQVEDPV 235

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2050477 AT2G44380 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 70/210 (33%), Positives = 115/210 (54%)

Query:     4 KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCW--ECKFFLHEQCGNASRAMQHTS 61
             +H SH H LR+++ +  +E  CS CEL ++G A+ C   +C +FLH+ C +  R   H S
Sbjct:    13 RHASHNHPLRVFKARDEDEVVCSGCELELTGQAFKCMKSDCDYFLHKSCFDLPRETNHKS 72

Query:    62 HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
             HP H LTL+ +  Y   ++ C+ACGE GS F++ C  C +D+HV CAF+PE +  + H H
Sbjct:    73 HPNHSLTLLHSPPYGQ-SYTCDACGEYGSGFTYNCSECQYDVHVGCAFIPETVEREDHEH 131

Query:   122 SLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHV-SCTRNRNNSDSA 180
              L L Y  P     + + ++CD+C +++ +   W Y C  C++  HV SC    ++    
Sbjct:   132 PLTLLYNTPCKGREDGAKFICDVCEEKMSEN-LWVYYCKECDYGTHVHSCAVYEDHES-- 188

Query:   181 KPEPNSAAYQKEESASGSSQQNQTERTEIE 210
               E      ++ E++S  S+     + + E
Sbjct:   189 --EKRGGGREEGEASSAVSRMKSLMKAQDE 216

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2062804 AT2G28270 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 70/209 (33%), Positives = 105/209 (50%)

Query:     4 KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCW--ECKFFLHEQCGNASRAMQHTS 61
             +H SH H LR++  +  +E  CS CE  + G A+ C   EC +FLH+ C +    + H S
Sbjct:    12 RHPSHNHPLRVFNSKEEDEIICSGCEHDLIGQAFKCTKSECDYFLHKSCFDLPGEIHHKS 71

Query:    62 HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
             H  H LTL+ +       + C+ACGE GSAF++ C  C + +HV CAF+PE +  + H H
Sbjct:    72 HTNHPLTLLHSPPNGLSTYTCDACGEYGSAFTYHCSECKYHVHVGCAFVPENVKREDHEH 131

Query:   122 SLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHV-SCTRNRNNSDSA 180
              L L Y  P     +   ++CD+C   + +   W Y C  C++  HV SCT N +N    
Sbjct:   132 PLTLLYNTPCKGRKDGVVFICDVCEVDVSEN-LWVYYCKECDYGTHVHSCTTNEDNGPKK 190

Query:   181 KPEPNSAAYQKEESASGSSQQNQTERTEI 209
               E    +     S   S  + + E  E+
Sbjct:   191 GGEEEGESSSLSTSRIKSLMEAEKEMREM 219

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2041996 AT2G27660 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 2.8e-32, P = 2.8e-32
 Identities = 75/189 (39%), Positives = 100/189 (52%)

Query:     5 HFSHPHNLRIYQVQHGNEYSCSACELII-SGSAYGCWECKFFLHEQCGNASRAMQHTSHP 63
             HFSHPH L++      +   CSAC+L   +G  Y C  C F LHE C    + + H SHP
Sbjct:    14 HFSHPHRLQLTPAT--SSPPCSACKLTGGNGRVYSCRPCNFSLHESCSKMKQVITHPSHP 71

Query:    64 MHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSH-FHS 122
              H L+L+    Y  G F C+ CG  G+ FS+ C +CDFD+H  CA+ P  +IH SH  H+
Sbjct:    72 SHTLSLLVAPVYDGGYFNCDGCGIHGTGFSYQCSVCDFDIHALCAYKPLSIIHKSHPQHN 131

Query:   123 LNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN-----NS 177
             L L++  P   +  +  + CDIC K    K  W Y C  C F AHV C    N     +S
Sbjct:   132 LKLAFQSP---YGANKGFSCDICRKI--GKNQWLYRCIPCEFDAHVGCITGPNPHLLQHS 186

Query:   178 DSAKPEPNS 186
              SA P P++
Sbjct:   187 TSA-PNPHT 194

GO:0008270 "zinc ion binding" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2050589 AT2G44370 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 66/210 (31%), Positives = 110/210 (52%)

Query:     4 KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCW--ECKFFLHEQCGNASRAMQHTS 61
             +H SH H LR ++ Q   E  CS C+L + G+A+ C   EC +FLH+ C    R  +H +
Sbjct:     9 RHPSHNHPLRSHKAQVEEEIICSGCDLDLIGAAFKCTKSECDYFLHKSCFELPRETRHKA 68

Query:    62 HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
             HP H L L+ +  Y +  + C+ACGE GS F++ C +C +D+HV C  +PE +  + H H
Sbjct:    69 HPDHPLILLYSPPYES-TYTCDACGEYGSGFTYNCSICQYDVHVGCVSMPESVEREGHAH 127

Query:   122 SLNLSYALPAAHHYESSS-YVCDICHKQLDQKCFWSYNCFACNFHAHV-SCTRNRNNSDS 179
              L L Y  P    Y++   + CD+C + +     WSY C  C++  H+ SC      ++ 
Sbjct:   128 PLTLLYRSP----YQNGLIFNCDVCQETVPDN-LWSYYCKECDYGTHLHSCAVEEEEAEE 182

Query:   180 AKPEPNSAAYQKEESASGSSQQNQTERTEI 209
              +P+    + +    + G+     +  +E+
Sbjct:   183 EEPKRGGGSARGNTKSGGNKGGRGSAASEL 212

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2168728 AT5G40590 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 74/215 (34%), Positives = 108/215 (50%)

Query:     4 KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCW---ECKFFLHEQCGNASRAMQHT 60
             +H SH H LR ++ +  +E  CS C+L + G+A+ C    +C +FLH+ C    R   H 
Sbjct:     8 RHPSHNHPLRGHKCEAKDEIICSGCDLDLVGAAFKCTKSSDCDYFLHKSCFELPRETNHK 67

Query:    61 SHPMHHLTLV--PTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDS 118
             SH  H LTL+  P +TY+     CNACGE GS+F++ C +C +D+HV C  +PE +  + 
Sbjct:    68 SHQPHTLTLIYSPKSTYT-----CNACGEYGSSFTYNCSICQYDVHVGCVSMPETVKRED 122

Query:   119 HFHSLNLSYALPAAHHYESSSYV--CDICHKQLDQKCFWSYNCFACNFHAHV-SCTRNRN 175
             H H L L Y  P    Y     V  CD+C   +     WSY C  C++  H+ SC +   
Sbjct:   123 HPHPLTLLYGSP----YNQPGLVSKCDVCEDIVPDN-LWSYYCKECDYATHLHSCKKEEE 177

Query:   176 NSDSAKPEPNSAAYQKEESASGSSQQNQTERTEIE 210
                  +    S      E A+    Q + ER +IE
Sbjct:   178 AKKEDQKGEGSKNSMNSELAAMLEAQREVERMQIE 212

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2827948 AT2G17740 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 63/170 (37%), Positives = 96/170 (56%)

Query:     4 KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCW--ECKFFLHEQCGNASRAMQHTS 61
             +H SH H LR ++ Q  +E  CS C+L + G+ + C   EC +FLH+ C +  R ++H S
Sbjct:     8 RHPSHNHPLRGHKAQVEDEIICSGCDLDLLGAYFKCTKSECDYFLHKSCFDLPREIRHKS 67

Query:    62 HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
             HP H L L+ +   +   + C+ACGE GS F++ C +C +D+HV C  +PE + HD H H
Sbjct:    68 HPDHPLILLYSPQNNNSTYTCDACGEYGSGFTYNCSICQYDVHVGCVSVPETMKHDEHVH 127

Query:   122 SLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHV-SC 170
              L L Y  P    +    + CD+C + +     W Y C  C++ AH+ SC
Sbjct:   128 PLALIYKAPCPKDH---IFTCDVCDETMPHN-LWLYYCQKCDYGAHLHSC 173

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2158347 AT5G43520 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 65/210 (30%), Positives = 103/210 (49%)

Query:     4 KHFSHPHNLRIYQVQHGNEYSCSACELIISGSAYGCW--ECKFFLHEQCGNASRAMQHTS 61
             +H SH H LR+++ +  +E +CS CEL ++G A+ C   EC +FLH+ C +      + S
Sbjct:    17 RHPSHNHPLRVFKAKEEDETACSGCELELTGQAFKCIKSECDYFLHKSCFDLPSETNNKS 76

Query:    62 HPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFH 121
             H  H LTL+ +       + C+AC + GS FS+ C  C++ LHV CAF+PE +  + H H
Sbjct:    77 HQDHPLTLLHSPPDDRSVYTCDACDQYGSGFSYHCSNCNYSLHVGCAFIPETVDREDHEH 136

Query:   122 SLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHV-SCTRNRNNSDSA 180
              L L Y  P     E + + C  C + + +   W Y C  C++  H+ SC    +     
Sbjct:   137 PLTLLYCTPCKGR-EDTYFTCSACDETISED-LWMYYCKDCDYGTHLHSCAAYEDQGKEE 194

Query:   181 KPEPNSAAYQKEESASGSSQQNQTERTEIE 210
             + E          S   S  + Q E   ++
Sbjct:   195 EDEDEEGEASSPASRIKSLMKAQDEMAAMQ 224

GO:0005634 "nucleus" evidence=ISM

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2132338 AT4G02540 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 63/176 (35%), Positives = 86/176 (48%)

Query:     4 KHFSHPHNLRIYQVQHGNEYS----CSACEL-IISGSAYGCWECKFFLHEQCGNASRAMQ 58
             +HFSH H+     V    +Y     C AC   I  G+ + C +C F LHE+C N  R + 
Sbjct:   531 QHFSHEHHHMRLDVNTDRDYDENKLCQACTTPIYFGNFFSCMQCDFILHEKCANFRRKIH 590

Query:    59 HTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSA-FSFCC--PLCDFDLHVQCAFLPEILI 115
             H +HP H LTL  T       F C+AC    +A F + C    C F +HVQCA + E L+
Sbjct:   591 HPTHP-HLLTLSRTYEGEHHAFACSACSVWCTAGFFYECNEEACYFKVHVQCATISEPLV 649

Query:   116 HDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFA-CNFHAHVSC 170
             H+SH H L L+ + P     E     C++CH  L +    ++NC   CNF     C
Sbjct:   650 HESHMHPLFLT-SKP-----EEEQRTCNVCHN-LRRGGSETFNCIEECNFSLCFGC 698

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2028937 AT1G66450 "AT1G66450" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 66/176 (37%), Positives = 87/176 (49%)

Query:     4 KHFSHP-HNLRIYQV--QHGNEYS-CSACEL-IISGSAYGCWECKFFLHEQCGNASRAMQ 58
             +HFSH  H L + +   +  NE   C AC   I SG  Y C +C F LHE+C N SR + 
Sbjct:   401 QHFSHQQHYLSLDENTGRDNNENKLCQACITPIYSGKFYSCMKCNFILHEECANFSRKIH 460

Query:    59 HTSHPMHHLTLV-PTTTYSAGNFLCNACGEP-GSAFSFCCPL--CDFDLHVQCAFLPEIL 114
             H  HP H LTL+ PTT        C+AC     + F + C    C F LHVQC+ + E L
Sbjct:   461 HPIHP-HMLTLMTPTTDRINIENSCSACPWLCTTGFFYECDREGCRFILHVQCSKISEPL 519

Query:   115 IHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSC 170
             +H+SH H L L+ + P    +      CD+C K  D     ++NC  C F     C
Sbjct:   520 VHESHMHPLFLT-SRPGERKH------CDVCKKPRDTSTSETFNCNECVFSLCFKC 568

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam07649	30	pfam07649, C1_3, C1-like domain	7e-04

>gnl|CDD|219497 pfam07649, C1_3, C1-like domain

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 80  FLCNACGEPGSAFSF-CCPLCDFDLHVQCA 108
             CNACG P     F  C  CDF LH  CA
Sbjct: 1   KTCNACGLPIDGDPFYSCSECDFVLHEDCA 30

This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	98.7
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.57
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.41
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	98.33
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	98.33
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.32
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	98.27
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.16
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	98.11
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	98.06
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	97.98
KOG0696	683	consensus Serine/threonine protein kinase [Signal	97.97
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	97.94
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	97.94
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	97.87
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	97.84
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	97.78
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	97.74
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	97.74
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	97.67
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	97.63
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	97.6
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	97.6
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	97.52
KOG4582	278	consensus Uncharacterized conserved protein, conta	97.5
KOG1280	381	consensus Uncharacterized conserved protein contai	97.46
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	97.41
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	97.4
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	97.38
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	97.33
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	97.23
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	97.21
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	97.16
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	97.11
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	97.1
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	97.09
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	97.08
KOG1280	381	consensus Uncharacterized conserved protein contai	97.08
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	97.0
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	96.77
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	96.39
KOG4582	278	consensus Uncharacterized conserved protein, conta	96.04
KOG0956	900	consensus PHD finger protein AF10 [General functio	95.87
KOG0957	707	consensus PHD finger protein [General function pre	95.86
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	95.69
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	95.26
KOG0696	683	consensus Serine/threonine protein kinase [Signal	95.21
KOG4286	966	consensus Dystrophin-like protein [Cell motility;	93.33
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	92.82
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	92.73
KOG0694	694	consensus Serine/threonine protein kinase [Signal	92.2
KOG0954	893	consensus PHD finger protein [General function pre	91.35
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	89.22
KOG4286	966	consensus Dystrophin-like protein [Cell motility;	89.08
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	88.77
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	88.34
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	87.99
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	85.42
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	82.5
KOG1244	336	consensus Predicted transcription factor Requiem/N	82.25
KOG1169	634	consensus Diacylglycerol kinase [Lipid transport a	81.62
KOG2807	378	consensus RNA polymerase II transcription initiati	81.01
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	80.96
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	80.22

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=98.70  E-value=1.4e-08  Score=65.46  Aligned_cols=40  Identities=33%  Similarity=0.714  Sum_probs=34.1

Q ss_pred             ccccccccCCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceE
Q 040047           23 YSCSACELIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLT   68 (240)
Q Consensus        23 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~   68 (240)
                      ..||+|+++|.|.+|+|..| ||+|+..|....   .   |+.|+|.
T Consensus         1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~---~---H~~H~f~   41 (43)
T cd02340           1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG---V---HPEHAML   41 (43)
T ss_pred             CCCCCCCCcCcCCeEECCCCCCccchHHhhCcC---C---CCCCCEE
Confidence            47999999999999999999 899999999865   3   4556765

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.57  E-value=2.1e-08  Score=59.64  Aligned_cols=29  Identities=48%  Similarity=1.047  Sum_probs=14.2

Q ss_pred             ccccccccCCCC-ceEeeCCCCCcchhhhc
Q 040047           23 YSCSACELIISG-SAYGCWECKFFLHEQCG   51 (240)
Q Consensus        23 ~~C~~C~~~~~g-~~Y~C~~C~f~lH~~Ca   51 (240)
                      +.|++|++++.+ ..|.|.+|||+||..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS----S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence            479999999988 78999999999999996

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.41  E-value=8e-08  Score=57.11  Aligned_cols=29  Identities=52%  Similarity=1.248  Sum_probs=14.1

Q ss_pred             ccccccCCCCCc-eeEEcCCCCcccccccc
Q 040047           80 FLCNACGEPGSA-FSFCCPLCDFDLHVQCA  108 (240)
Q Consensus        80 ~~Cd~C~~~~~g-~~Y~C~~C~f~lH~~Ca  108 (240)
                      +.|++|++.+.+ +.|+|.+|+|++|..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS----S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence            479999999987 99999999999999996

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=98.33  E-value=5.7e-07  Score=58.51  Aligned_cols=41  Identities=27%  Similarity=0.588  Sum_probs=32.7

Q ss_pred             ccccccc-cCCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceE
Q 040047           23 YSCSACE-LIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLT   68 (240)
Q Consensus        23 ~~C~~C~-~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~   68 (240)
                      ..||+|+ .+|.|.+|+|..| ||||+..|....   .|  ++.|+|.
T Consensus         1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~---~H--~~~H~f~   43 (45)
T cd02339           1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGD---KH--DLEHRFY   43 (45)
T ss_pred             CCCCCCCCCCcccCeEECCCCCCccchHHHhCCC---CC--CCCCCEE
Confidence            3799998 6888999999999 899999999841   22  2456764

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd02249 ZZ Zinc finger, ZZ type

Probab=98.33  E-value=5.8e-07  Score=58.69  Aligned_cols=43  Identities=37%  Similarity=0.743  Sum_probs=34.6

Q ss_pred             ccccccccCCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceE
Q 040047           23 YSCSACELIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLT   68 (240)
Q Consensus        23 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~   68 (240)
                      +.||+|+.+|.|.+|+|.+| ||+|+..|..... -.|+  +.|++.
T Consensus         1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~-~~H~--~~H~~~   44 (46)
T cd02249           1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK-KGHP--PDHSFT   44 (46)
T ss_pred             CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc-CCCC--CCCCEe
Confidence            47999999999999999999 7999999999765 2332  146665

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.32  E-value=3.4e-07  Score=54.45  Aligned_cols=29  Identities=41%  Similarity=1.012  Sum_probs=27.2

Q ss_pred             ccccccCCCCCce-eEEcCCCCcccccccc
Q 040047           80 FLCNACGEPGSAF-SFCCPLCDFDLHVQCA  108 (240)
Q Consensus        80 ~~Cd~C~~~~~g~-~Y~C~~C~f~lH~~Ca  108 (240)
                      +.|++|++.+.++ +|+|..|+|++|+.||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence            4799999999999 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=98.27  E-value=8.4e-07  Score=57.63  Aligned_cols=31  Identities=29%  Similarity=0.855  Sum_probs=28.3

Q ss_pred             cccccccc-CCCCceEeeCCC-CCcchhhhccc
Q 040047           23 YSCSACEL-IISGSAYGCWEC-KFFLHEQCGNA   53 (240)
Q Consensus        23 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~   53 (240)
                      ..||+|+. +|.|.+|+|.+| ||||++.|...
T Consensus         1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~   33 (45)
T cd02344           1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT   33 (45)
T ss_pred             CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence            47999974 899999999999 89999999986

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.16  E-value=1.2e-06  Score=52.08  Aligned_cols=29  Identities=41%  Similarity=0.928  Sum_probs=27.2

Q ss_pred             ccccccccCCCCc-eEeeCCCCCcchhhhc
Q 040047           23 YSCSACELIISGS-AYGCWECKFFLHEQCG   51 (240)
Q Consensus        23 ~~C~~C~~~~~g~-~Y~C~~C~f~lH~~Ca   51 (240)
                      +.|++|++.+.|. +|+|..|+|+||..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence            5799999999999 9999999999999996

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=98.11  E-value=2.6e-06  Score=56.41  Aligned_cols=45  Identities=24%  Similarity=0.541  Sum_probs=35.2

Q ss_pred             ccccccc-cCCCCceEeeCCC-CCcchhhhccccccccCCCC-CCcceEE
Q 040047           23 YSCSACE-LIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSH-PMHHLTL   69 (240)
Q Consensus        23 ~~C~~C~-~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~H-p~H~L~l   69 (240)
                      ..|++|+ .+|.|.+|+|..| ||+|+..|.....+.  ..| +.|++.+
T Consensus         1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~--~~H~~~H~~~~   48 (49)
T cd02338           1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTT--ERHLFDHPMQC   48 (49)
T ss_pred             CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcC--CCCCCCCCEEE
Confidence            3799998 7899999999999 999999999966432  233 2567654

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=98.06  E-value=2.3e-06  Score=54.58  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             cccccccc-CCCCceEeeCCC-CCcchhhhccccc
Q 040047           23 YSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASR   55 (240)
Q Consensus        23 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~   55 (240)
                      ..||+|+. +|.|.+|+|..| ||||++.|.....
T Consensus         1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~   35 (43)
T cd02342           1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMG   35 (43)
T ss_pred             CCCCCCCCCcccccceEeCCCCCCccHHHHhhhhc
Confidence            47999975 899999999999 9999999987543

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=97.98  E-value=6.2e-06  Score=54.60  Aligned_cols=44  Identities=27%  Similarity=0.637  Sum_probs=33.7

Q ss_pred             cccccccc-CCCCceEeeCCC-CCcchhhhccccccc-cCCCCCCcceE
Q 040047           23 YSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAM-QHTSHPMHHLT   68 (240)
Q Consensus        23 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i-~h~~Hp~H~L~   68 (240)
                      ..||+|+. +|.|.+|+|..| ||||+..|...-... .|..  .||+.
T Consensus         1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~--~Hp~~   47 (49)
T cd02334           1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKN--SHPMK   47 (49)
T ss_pred             CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCC--CCCee
Confidence            36999985 799999999999 999999999865433 3432  45654

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.97  E-value=1.6e-06  Score=80.70  Aligned_cols=86  Identities=23%  Similarity=0.543  Sum_probs=68.7

Q ss_pred             CcccccccccCCCCc---eEeeCCCCCcchhhhccc-----cccc-----cCCCCCCcceEEeeccCCCCCCccccccCC
Q 040047           21 NEYSCSACELIISGS---AYGCWECKFFLHEQCGNA-----SRAM-----QHTSHPMHHLTLVPTTTYSAGNFLCNACGE   87 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~-----p~~i-----~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~   87 (240)
                      .+..|+.|...|||+   +|.|.+|-|.+|+.|.+.     |.+-     ..|.- +|.++..++.    ++..||-||.
T Consensus        55 qPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~-kHkf~~~tYs----sPTFCDhCGs  129 (683)
T KOG0696|consen   55 QPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRS-KHKFKIHTYS----SPTFCDHCGS  129 (683)
T ss_pred             CCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCccc-ccceeeeecC----CCchhhhHHH
Confidence            689999999999986   699999999999999875     3221     22333 6888887654    4789999998


Q ss_pred             CCCce---eEEcCCCCcccccccccCC
Q 040047           88 PGSAF---SFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        88 ~~~g~---~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ...|.   ..+|+.|+..+|..|...-
T Consensus       130 LLyGl~HQGmKC~~C~mNVH~rCv~nV  156 (683)
T KOG0696|consen  130 LLYGLIHQGMKCDTCDMNVHHRCVENV  156 (683)
T ss_pred             HHHHHHhcccccccccchHHHHHhhcC
Confidence            76543   4789999999999999653

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=97.94  E-value=8e-06  Score=53.82  Aligned_cols=42  Identities=33%  Similarity=0.773  Sum_probs=34.0

Q ss_pred             cccccccc-CCCCceEeeCCCC---CcchhhhccccccccCCCCCCcceE
Q 040047           23 YSCSACEL-IISGSAYGCWECK---FFLHEQCGNASRAMQHTSHPMHHLT   68 (240)
Q Consensus        23 ~~C~~C~~-~~~g~~Y~C~~C~---f~lH~~Ca~~p~~i~h~~Hp~H~L~   68 (240)
                      +.||+|+. +|.|.+|+|..|.   |||+..|.....  .|.  +.|+|.
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~--~H~--~~H~~~   46 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE--SHQ--EDHWLV   46 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC--CCC--CCCcee
Confidence            47999987 9999999999996   999999999765  332  346664

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=97.94  E-value=7.8e-06  Score=53.72  Aligned_cols=35  Identities=26%  Similarity=0.533  Sum_probs=30.2

Q ss_pred             ccccccccCCCCceEeeCCC-CCcchhhhccccccc
Q 040047           23 YSCSACELIISGSAYGCWEC-KFFLHEQCGNASRAM   57 (240)
Q Consensus        23 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i   57 (240)
                      +.||+|...+.|.+|+|..| ||||+.+|.....+.
T Consensus         1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~   36 (48)
T cd02343           1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKP   36 (48)
T ss_pred             CCCCCCCCcCCCceEECCCCCCchhHHHHHhCCccC
Confidence            36999998888889999999 999999999875544

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=97.87  E-value=9.3e-06  Score=52.28  Aligned_cols=31  Identities=29%  Similarity=0.806  Sum_probs=29.0

Q ss_pred             cccccCCCCCceeEEcCCC-CcccccccccCC
Q 040047           81 LCNACGEPGSAFSFCCPLC-DFDLHVQCAFLP  111 (240)
Q Consensus        81 ~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP  111 (240)
                      .||.|++.+.|.+|+|..| +|||+..|....
T Consensus         2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~   33 (43)
T cd02340           2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG   33 (43)
T ss_pred             CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence            6999999889999999999 899999999865

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=97.84  E-value=1.3e-05  Score=53.13  Aligned_cols=32  Identities=41%  Similarity=0.740  Sum_probs=29.3

Q ss_pred             ccccccc-CCCCceEeeCCC-CCcchhhhccccc
Q 040047           24 SCSACEL-IISGSAYGCWEC-KFFLHEQCGNASR   55 (240)
Q Consensus        24 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~   55 (240)
                      .|++|.. +|.|.+|+|..| ||+|+..|.....
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~   35 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR   35 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence            6999988 999999999999 9999999998654

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=97.78  E-value=3.2e-05  Score=51.13  Aligned_cols=45  Identities=31%  Similarity=0.614  Sum_probs=34.1

Q ss_pred             ccccccccCCCC-ceEeeCCC-CCcchhhhccccccc-cCCCCCCcceEE
Q 040047           23 YSCSACELIISG-SAYGCWEC-KFFLHEQCGNASRAM-QHTSHPMHHLTL   69 (240)
Q Consensus        23 ~~C~~C~~~~~g-~~Y~C~~C-~f~lH~~Ca~~p~~i-~h~~Hp~H~L~l   69 (240)
                      +.||+|.+.+.+ .+|+|.+| ||+|+..|.....+. .|.  +.|++.+
T Consensus         1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~--~~H~~~~   48 (49)
T cd02335           1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHR--NDHNYRV   48 (49)
T ss_pred             CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCC--CCCCeEe
Confidence            469999987765 79999999 999999999976543 332  2466543

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02249 ZZ Zinc finger, ZZ type

Probab=97.74  E-value=2.6e-05  Score=50.84  Aligned_cols=33  Identities=30%  Similarity=0.779  Sum_probs=29.9

Q ss_pred             ccccccCCCCCceeEEcCCC-CcccccccccCCc
Q 040047           80 FLCNACGEPGSAFSFCCPLC-DFDLHVQCAFLPE  112 (240)
Q Consensus        80 ~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP~  112 (240)
                      +.|+.|+..+.|.+|+|..| +|+|+..|.....
T Consensus         1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~   34 (46)
T cd02249           1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK   34 (46)
T ss_pred             CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence            47999999888999999999 7999999998765

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=97.74  E-value=2.6e-06  Score=81.26  Aligned_cols=45  Identities=22%  Similarity=0.494  Sum_probs=39.2

Q ss_pred             CCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            7 SHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         7 ~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .|||.|....+.  .+.+||-|++-++|.   +.+|..|+..+|+.||..
T Consensus       143 i~PH~l~vhSY~--~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~k  190 (888)
T KOG4236|consen  143 IRPHTLFVHSYK--APTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFK  190 (888)
T ss_pred             eecceeeeeccc--CchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhc
Confidence            477888887766  899999999998885   699999999999999964

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=1.5e-05  Score=52.02  Aligned_cols=34  Identities=32%  Similarity=0.769  Sum_probs=27.1

Q ss_pred             Cccccccccc-CCCCceEeeCCC-CCcchhhhcccc
Q 040047           21 NEYSCSACEL-IISGSAYGCWEC-KFFLHEQCGNAS   54 (240)
Q Consensus        21 ~~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p   54 (240)
                      ..+.|++|+. +|.|.+|+|..| ||+|+..|....
T Consensus         3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g   38 (46)
T PF00569_consen    3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKG   38 (46)
T ss_dssp             SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH-
T ss_pred             CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCc
Confidence            3689999988 888999999999 899999999853

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=97.63  E-value=4.1e-05  Score=49.43  Aligned_cols=33  Identities=33%  Similarity=0.760  Sum_probs=30.2

Q ss_pred             cccccccccCCCCceEeeCCC-CCcchhhhcccc
Q 040047           22 EYSCSACELIISGSAYGCWEC-KFFLHEQCGNAS   54 (240)
Q Consensus        22 ~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p   54 (240)
                      .+.|++|+.+|.|.+|+|..| ||+|+..|....
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~   37 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG   37 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence            578999999999999999999 999999999854

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=97.60  E-value=4.5e-05  Score=50.28  Aligned_cols=33  Identities=39%  Similarity=0.921  Sum_probs=29.4

Q ss_pred             ccccccCC-CCCceeEEcCCCC---cccccccccCCc
Q 040047           80 FLCNACGE-PGSAFSFCCPLCD---FDLHVQCAFLPE  112 (240)
Q Consensus        80 ~~Cd~C~~-~~~g~~Y~C~~C~---f~lH~~Ca~lP~  112 (240)
                      +.||+|+. .+.|.+|+|.+|.   |||+..|.....
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~   37 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE   37 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence            47999998 7889999999997   999999998764

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=97.60  E-value=4.3e-05  Score=48.68  Aligned_cols=30  Identities=27%  Similarity=0.697  Sum_probs=26.3

Q ss_pred             ccccccccCCCCceEeeCCC-CCcchhhhccc
Q 040047           23 YSCSACELIISGSAYGCWEC-KFFLHEQCGNA   53 (240)
Q Consensus        23 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~   53 (240)
                      +.|++|.. +.|.+|+|..| ||||+..|...
T Consensus         1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~   31 (41)
T cd02337           1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNT   31 (41)
T ss_pred             CcCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence            46999987 45789999999 89999999986

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=97.52  E-value=6.9e-05  Score=48.71  Aligned_cols=30  Identities=23%  Similarity=0.700  Sum_probs=26.9

Q ss_pred             cccccCC-CCCceeEEcCCC-CcccccccccC
Q 040047           81 LCNACGE-PGSAFSFCCPLC-DFDLHVQCAFL  110 (240)
Q Consensus        81 ~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~l  110 (240)
                      .||.|++ .+.|.+|+|..| ||||+..|...
T Consensus         2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~   33 (45)
T cd02339           2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG   33 (45)
T ss_pred             CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence            6999995 567999999999 99999999884

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=97.50  E-value=6.4e-05  Score=67.14  Aligned_cols=42  Identities=29%  Similarity=0.635  Sum_probs=35.8

Q ss_pred             cccccccc-CCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEE
Q 040047           23 YSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTL   69 (240)
Q Consensus        23 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l   69 (240)
                      ..||+|+. +|.|.+|+|.+| ||||++.|....     +.|.+|.|..
T Consensus       153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~-----~~h~~H~~lR  196 (278)
T KOG4582|consen  153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN-----EHHAAHAMLR  196 (278)
T ss_pred             ccCCCccCCccccceeeecCCCccchhHHhhcCC-----CCCcccceee
Confidence            79999999 899999999999 999999998754     4566677655

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=97.46  E-value=0.00011  Score=66.34  Aligned_cols=67  Identities=24%  Similarity=0.528  Sum_probs=46.4

Q ss_pred             CcccccccccC-CCCceEeeCCC-CCcchhhhccccccccCCCCC-CcceEEeecc-------------CCCCCCccccc
Q 040047           21 NEYSCSACELI-ISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHP-MHHLTLVPTT-------------TYSAGNFLCNA   84 (240)
Q Consensus        21 ~~~~C~~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp-~H~L~l~~~~-------------~~~~~~~~Cd~   84 (240)
                      +.+.||||++. +.+.+|+|..| ||||+.+|.+.-.  .-+.|+ .||+..+-.+             -|....|.|-.
T Consensus         7 e~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~--tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~~qSftCPy   84 (381)
T KOG1280|consen    7 EGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGA--TTPIHDEDHPMQCILSRVDFELYFGGEPISHYDPQSFTCPY   84 (381)
T ss_pred             CCceeccccccceeeeeeEeeeecchhHHHHHhhcCC--CCcccCCCCceeEEeeccceeeEecCccccccccccccCCc
Confidence            67899999775 45678999999 9999999999653  333333 5676654221             12234677888


Q ss_pred             cCCCC
Q 040047           85 CGEPG   89 (240)
Q Consensus        85 C~~~~   89 (240)
                      |++.+
T Consensus        85 C~~~G   89 (381)
T KOG1280|consen   85 CGIMG   89 (381)
T ss_pred             ccccc
Confidence            87765

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=97.41  E-value=8.3e-05  Score=47.36  Aligned_cols=38  Identities=29%  Similarity=0.797  Sum_probs=30.9

Q ss_pred             ccccccCCCCCceeEEcCCC-CcccccccccCCceeeeCCCceeeE
Q 040047           80 FLCNACGEPGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLN  124 (240)
Q Consensus        80 ~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~  124 (240)
                      +.|+.|.. +.+.+|+|..| ||||+..|...      ..|+|.|.
T Consensus         1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~------~~H~H~~~   39 (41)
T cd02337           1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNT------KNHPHKME   39 (41)
T ss_pred             CcCCCCCC-cCCCceECCCCcchhhHHHHhCC------CCCCcccc
Confidence            46999987 45799999999 99999999875      45677663

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=97.40  E-value=0.00012  Score=48.44  Aligned_cols=43  Identities=26%  Similarity=0.652  Sum_probs=33.3

Q ss_pred             cccccC-CCCCceeEEcCCC-CcccccccccCCceeeeCCCc--eeeEE
Q 040047           81 LCNACG-EPGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHF--HSLNL  125 (240)
Q Consensus        81 ~Cd~C~-~~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~--H~L~l  125 (240)
                      .|+.|+ ..+.|.+|+|..| ||||+..|......  ...|.  |++.+
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~--~~~H~~~H~~~~   48 (49)
T cd02338           2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVT--TERHLFDHPMQC   48 (49)
T ss_pred             CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCc--CCCCCCCCCEEE
Confidence            699999 5678999999999 99999999986543  23343  66543

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=97.38  E-value=0.00015  Score=47.11  Aligned_cols=30  Identities=33%  Similarity=0.730  Sum_probs=27.4

Q ss_pred             cccccCC-CCCceeEEcCCC-CcccccccccC
Q 040047           81 LCNACGE-PGSAFSFCCPLC-DFDLHVQCAFL  110 (240)
Q Consensus        81 ~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~l  110 (240)
                      .||.|+. .+.|.+|+|..| ||||+..|...
T Consensus         2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~   33 (45)
T cd02344           2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT   33 (45)
T ss_pred             CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence            6999996 578999999999 89999999886

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=97.33  E-value=0.00016  Score=48.02  Aligned_cols=43  Identities=23%  Similarity=0.515  Sum_probs=31.4

Q ss_pred             CCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhcccc
Q 040047           10 HNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus        10 H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      |.++..+.  ..+..|+.|++.|+|   .+|+|..|++.+|++|.+..
T Consensus         1 H~f~~~~~--~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~   46 (53)
T PF00130_consen    1 HHFVPTTF--SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV   46 (53)
T ss_dssp             -EEEEEES--SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred             CeEEEccC--CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence            33344443  378999999999954   47999999999999999853

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=97.23  E-value=0.00017  Score=47.40  Aligned_cols=32  Identities=28%  Similarity=0.615  Sum_probs=28.5

Q ss_pred             cccccCCCCCceeEEcCCC-CcccccccccCCc
Q 040047           81 LCNACGEPGSAFSFCCPLC-DFDLHVQCAFLPE  112 (240)
Q Consensus        81 ~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP~  112 (240)
                      .||.|.+.+.+++|+|..| ||||+..|...-.
T Consensus         2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~   34 (48)
T cd02343           2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGV   34 (48)
T ss_pred             CCCCCCCcCCCceEECCCCCCchhHHHHHhCCc
Confidence            5999999878999999999 9999999987543

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=97.21  E-value=0.00016  Score=46.20  Aligned_cols=31  Identities=26%  Similarity=0.515  Sum_probs=27.3

Q ss_pred             cccccCC-CCCceeEEcCCC-CcccccccccCC
Q 040047           81 LCNACGE-PGSAFSFCCPLC-DFDLHVQCAFLP  111 (240)
Q Consensus        81 ~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~lP  111 (240)
                      .||+||. ++.|.+|+|..| ||||+..|....
T Consensus         2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~   34 (43)
T cd02342           2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM   34 (43)
T ss_pred             CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence            6999997 568999999999 999999998643

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=97.16  E-value=0.00036  Score=46.09  Aligned_cols=33  Identities=27%  Similarity=0.711  Sum_probs=28.9

Q ss_pred             ccccccCCCCC-ceeEEcCCC-CcccccccccCCc
Q 040047           80 FLCNACGEPGS-AFSFCCPLC-DFDLHVQCAFLPE  112 (240)
Q Consensus        80 ~~Cd~C~~~~~-g~~Y~C~~C-~f~lH~~Ca~lP~  112 (240)
                      +.||+|++.+. |.+|+|..| +|||+..|.....
T Consensus         1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~   35 (49)
T cd02335           1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGA   35 (49)
T ss_pred             CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcC
Confidence            36999999875 699999999 9999999998653

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.11  E-value=0.00018  Score=46.82  Aligned_cols=32  Identities=31%  Similarity=0.884  Sum_probs=25.9

Q ss_pred             CccccccCC-CCCceeEEcCCC-CcccccccccC
Q 040047           79 NFLCNACGE-PGSAFSFCCPLC-DFDLHVQCAFL  110 (240)
Q Consensus        79 ~~~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~l  110 (240)
                      .+.|++|+. .+.|.+|+|..| ||||+..|...
T Consensus         4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~   37 (46)
T PF00569_consen    4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK   37 (46)
T ss_dssp             SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred             CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence            679999998 667999999999 89999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=97.10  E-value=0.00027  Score=46.70  Aligned_cols=31  Identities=32%  Similarity=0.735  Sum_probs=28.4

Q ss_pred             cccccCC-CCCceeEEcCCC-CcccccccccCC
Q 040047           81 LCNACGE-PGSAFSFCCPLC-DFDLHVQCAFLP  111 (240)
Q Consensus        81 ~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~lP  111 (240)
                      .|++|++ .+.|.+|+|..| ||||+..|....
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~   34 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKG   34 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHhCC
Confidence            5999998 788999999999 999999999865

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=97.09  E-value=0.00038  Score=46.05  Aligned_cols=31  Identities=39%  Similarity=0.921  Sum_probs=27.7

Q ss_pred             cccccCC-CCCceeEEcCCC-CcccccccccCC
Q 040047           81 LCNACGE-PGSAFSFCCPLC-DFDLHVQCAFLP  111 (240)
Q Consensus        81 ~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~lP  111 (240)
                      .||.|+. .+.|.+|+|..| ||||+..|...-
T Consensus         2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g   34 (49)
T cd02334           2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSG   34 (49)
T ss_pred             CCCCCCCCCceeeeEECCCCCCcCchHHHHhCC
Confidence            6999997 578999999999 999999999754

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=97.08  E-value=0.00032  Score=45.22  Aligned_cols=33  Identities=30%  Similarity=0.862  Sum_probs=29.8

Q ss_pred             CccccccCCCCCceeEEcCCC-CcccccccccCC
Q 040047           79 NFLCNACGEPGSAFSFCCPLC-DFDLHVQCAFLP  111 (240)
Q Consensus        79 ~~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP  111 (240)
                      ...|+.|+..+.|.+|+|..| +|||+..|....
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~   37 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG   37 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence            578999999888999999999 999999998754

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=97.08  E-value=0.00041  Score=62.80  Aligned_cols=72  Identities=21%  Similarity=0.455  Sum_probs=48.8

Q ss_pred             CCccccccCCCC-CceeEEcCCC-CcccccccccCCceeeeCCCceeeEEeecC---------CccCCCCccceeccccc
Q 040047           78 GNFLCNACGEPG-SAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLNLSYAL---------PAAHHYESSSYVCDICH  146 (240)
Q Consensus        78 ~~~~Cd~C~~~~-~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~---------~~~~~~~~~~~~C~vC~  146 (240)
                      ....||+|++.. .+.+|+|..| |||||..|...-.+.....+.||+..+...         .++.-|....|.|-+|+
T Consensus         7 e~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~~qSftCPyC~   86 (381)
T KOG1280|consen    7 EGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFGGEPISHYDPQSFTCPYCG   86 (381)
T ss_pred             CCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEecCccccccccccccCCccc
Confidence            468899999975 5888999999 999999999765443333345776643221         11112224578899998


Q ss_pred             ccc
Q 040047          147 KQL  149 (240)
Q Consensus       147 ~~~  149 (240)
                      +.+
T Consensus        87 ~~G   89 (381)
T KOG1280|consen   87 IMG   89 (381)
T ss_pred             ccc
Confidence            853

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=97.00  E-value=0.0019  Score=42.84  Aligned_cols=39  Identities=23%  Similarity=0.440  Sum_probs=29.6

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      ...+|++|++.+.+....+|+|.+|++.+|.+|+.....
T Consensus        10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~   48 (53)
T PF00130_consen   10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPP   48 (53)
T ss_dssp             STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSS
T ss_pred             CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCC
Confidence            457999999998422157999999999999999876543

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=96.77  E-value=0.0012  Score=42.81  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=30.2

Q ss_pred             CcccccccccCCCC---ceEeeCCCCCcchhhhcccc
Q 040047           21 NEYSCSACELIISG---SAYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus        21 ~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      .+..|+.|.+.++|   .+|+|..|++.+|+.|+...
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v   46 (50)
T cd00029          10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV   46 (50)
T ss_pred             CCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence            57789999999987   58999999999999999853

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=96.39  E-value=0.0019  Score=41.56  Aligned_cols=33  Identities=30%  Similarity=0.630  Sum_probs=29.6

Q ss_pred             CcccccccccCCCCc--eEeeCCCCCcchhhhccc
Q 040047           21 NEYSCSACELIISGS--AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~--~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .+..|+.|.+.|++.  +|+|..|++..|+.|+..
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~   44 (49)
T smart00109       10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK   44 (49)
T ss_pred             CCCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence            578899999999873  899999999999999985

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=96.04  E-value=0.0038  Score=55.82  Aligned_cols=32  Identities=28%  Similarity=0.722  Sum_probs=29.4

Q ss_pred             ccccccCC-CCCceeEEcCCC-CcccccccccCC
Q 040047           80 FLCNACGE-PGSAFSFCCPLC-DFDLHVQCAFLP  111 (240)
Q Consensus        80 ~~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~lP  111 (240)
                      ..||.|+. .+.|.+|+|.+| |||||..|-...
T Consensus       153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~  186 (278)
T KOG4582|consen  153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN  186 (278)
T ss_pred             ccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence            68999999 788999999999 999999998754

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=95.87  E-value=0.01  Score=58.33  Aligned_cols=128  Identities=23%  Similarity=0.470  Sum_probs=85.4

Q ss_pred             cccccc-ccCCCCc--eEeeC--CCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCCceeEEcC
Q 040047           23 YSCSAC-ELIISGS--AYGCW--ECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCP   97 (240)
Q Consensus        23 ~~C~~C-~~~~~g~--~Y~C~--~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~   97 (240)
                      .-|-+| .|.+|-.  --.|.  .|...+|..|....                ..|   -|.|+|.-|...-...+++|.
T Consensus         6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIv----------------qVP---tGpWfCrKCesqeraarvrCe   66 (900)
T KOG0956|consen    6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIV----------------QVP---TGPWFCRKCESQERAARVRCE   66 (900)
T ss_pred             cceeeecCcCCCccCceeeecCCCceeeeehhcceeE----------------ecC---CCchhhhhhhhhhhhccceee
Confidence            347777 6677743  47788  69999999998742                122   267889888887667778888


Q ss_pred             CCCcc------------cccccccC-Cceeee-CCCc-eeeEEeecCCccCCCCccceecccccccccCCc---ceeEEe
Q 040047           98 LCDFD------------LHVQCAFL-PEILIH-DSHF-HSLNLSYALPAAHHYESSSYVCDICHKQLDQKC---FWSYNC  159 (240)
Q Consensus        98 ~C~f~------------lH~~Ca~l-P~~i~~-~~H~-H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~---~~~Y~C  159 (240)
                      .|-++            .|.-||.+ |++ +. .-|. -|+.|-+.+.  +   .-+..|-+|++.+..+.   +....|
T Consensus        67 LCP~kdGALKkTDn~GWAHVVCALYIPEV-rFgNV~TMEPIiLq~VP~--d---RfnKtCYIC~E~GrpnkA~~GACMtC  140 (900)
T KOG0956|consen   67 LCPHKDGALKKTDNGGWAHVVCALYIPEV-RFGNVHTMEPIILQDVPH--D---RFNKTCYICNEEGRPNKAAKGACMTC  140 (900)
T ss_pred             cccCcccceecccCCCceEEEEEeeccce-eecccccccceeeccCch--h---hhcceeeeecccCCccccccccceec
Confidence            88544            79999964 543 33 2222 3455544331  1   24678999998754221   456777


Q ss_pred             C--CCCeeeecccccCcc
Q 040047          160 F--ACNFHAHVSCTRNRN  175 (240)
Q Consensus       160 ~--~C~~~lH~~C~~~~~  175 (240)
                      +  .|.-.+|+.|+....
T Consensus       141 NKs~CkqaFHVTCAQ~~G  158 (900)
T KOG0956|consen  141 NKSGCKQAFHVTCAQRAG  158 (900)
T ss_pred             ccccchhhhhhhHhhhhc
Confidence            7  578899999986443

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=95.86  E-value=0.0032  Score=59.74  Aligned_cols=142  Identities=21%  Similarity=0.352  Sum_probs=86.5

Q ss_pred             Cccccccccc-CC--CCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCCceeEEcC
Q 040047           21 NEYSCSACEL-II--SGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCP   97 (240)
Q Consensus        21 ~~~~C~~C~~-~~--~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~   97 (240)
                      ...+|-+|.. .+  .|....|..|+..+|+.|..-...+.-++-.         ....-.+|+|++|.-.+.-  =+|.
T Consensus       118 k~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~---------s~~stepWfCeaC~~Gvs~--P~CE  186 (707)
T KOG0957|consen  118 KAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGS---------SDCSTEPWFCEACLYGVSL--PHCE  186 (707)
T ss_pred             cceEEEEeecCccccccceeeccccCceecccccccccccccCCCC---------ccCCCCchhhhhHhcCCCC--Cccc
Confidence            3458999933 33  3557999999999999999854433322210         1111247999999765431  2344


Q ss_pred             CC------------CcccccccccCCceeeeCCCceeeEEeecCCccCCCC-ccceecccccccccCCcceeEEeC--CC
Q 040047           98 LC------------DFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYE-SSSYVCDICHKQLDQKCFWSYNCF--AC  162 (240)
Q Consensus        98 ~C------------~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~-~~~~~C~vC~~~~~~~~~~~Y~C~--~C  162 (240)
                      -|            +-.+|.-||....-|... ..|.|.-+.....  .|. -+...|.+|...+-.+.|..-+|.  .|
T Consensus       187 lCPn~~GifKetDigrWvH~iCALYvpGVafg-~~~~l~~Vtl~em--~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMC  263 (707)
T KOG0957|consen  187 LCPNRFGIFKETDIGRWVHAICALYVPGVAFG-QTHTLCGVTLEEM--DYSKFGAKTCSACEDKIFARTGVCIRCDAGMC  263 (707)
T ss_pred             cCCCcCCcccccchhhHHHHHHHhhcCccccc-cccccccccHHHh--hhhhhccchhccccchhhhhcceeeeccchhh
Confidence            44            345899999765444321 1233322111100  121 256789999998764435667777  68


Q ss_pred             CeeeecccccCccc
Q 040047          163 NFHAHVSCTRNRNN  176 (240)
Q Consensus       163 ~~~lH~~C~~~~~~  176 (240)
                      .-++|+.|+....-
T Consensus       264 k~YfHVTCAQk~Gl  277 (707)
T KOG0957|consen  264 KEYFHVTCAQKLGL  277 (707)
T ss_pred             hhhhhhhHHhhhcc
Confidence            89999999865553

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=95.69  E-value=0.0087  Score=38.71  Aligned_cols=33  Identities=21%  Similarity=0.500  Sum_probs=28.6

Q ss_pred             CCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           78 GNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      ....|+.|++.+.+   ..|+|+.|++.+|.+|+..
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~   45 (50)
T cd00029          10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK   45 (50)
T ss_pred             CCCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence            35689999998864   7899999999999999864

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=95.26  E-value=0.0093  Score=38.24  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             CCccccccCCCCCc--eeEEcCCCCcccccccccC
Q 040047           78 GNFLCNACGEPGSA--FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g--~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      ....|+.|++.+.+  ..|+|..|++.+|.+|+..
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~   44 (49)
T smart00109       10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK   44 (49)
T ss_pred             CCCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence            36789999998865  3799999999999999864

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.21  E-value=0.0034  Score=58.95  Aligned_cols=100  Identities=22%  Similarity=0.388  Sum_probs=66.2

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCce---eEEcCCCCcccccccccCC-----ceeee-----CCCceeeEEeecCC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSAF---SFCCPLCDFDLHVQCAFLP-----EILIH-----DSHFHSLNLSYALP  130 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~---~Y~C~~C~f~lH~~Ca~lP-----~~i~~-----~~H~H~L~l~~~~~  130 (240)
                      .|.+...-.    ..+..|.-|..-+.|+   .+.|..|.|.+|.+|-..-     ..-+.     +...|.+.+..-  
T Consensus        45 ~HkF~aRFF----KqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~kHkf~~~tY--  118 (683)
T KOG0696|consen   45 SHKFIARFF----KQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTY--  118 (683)
T ss_pred             cceeeehhc----cCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCcccccceeeeec--
Confidence            456654322    2467999999877554   5999999999999998542     11111     222354443221  


Q ss_pred             ccCCCCccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          131 AAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       131 ~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                            +....||-|+..+.+-..-..+|..|++.+|.+|+....
T Consensus       119 ------ssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVP  157 (683)
T KOG0696|consen  119 ------SSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVP  157 (683)
T ss_pred             ------CCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCC
Confidence                  245799999998652102478999999999999986543

>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]

Probab=93.33  E-value=0.047  Score=54.32  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=36.8

Q ss_pred             ccccccccc-CCCCceEeeCCC-CCcchhhhccccccc-cCCCCCCcceEEe
Q 040047           22 EYSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAM-QHTSHPMHHLTLV   70 (240)
Q Consensus        22 ~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i-~h~~Hp~H~L~l~   70 (240)
                      .-+|++|++ +|.|++|+|..| |++||..|+..-+.- .|..|  ||+.-.
T Consensus       603 ~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~--~pM~Ey  652 (966)
T KOG4286|consen  603 QAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMH--YPMVEY  652 (966)
T ss_pred             hhhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCC--CCceee
Confidence            468999955 899999999999 999999999875543 45444  676644

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=92.82  E-value=0.088  Score=49.34  Aligned_cols=52  Identities=31%  Similarity=0.567  Sum_probs=39.7

Q ss_pred             CCcccccccccCCCCc-eEeeCCC-CCcchhhhccccccccCCCCCCcceEEeec
Q 040047           20 GNEYSCSACELIISGS-AYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVPT   72 (240)
Q Consensus        20 ~~~~~C~~C~~~~~g~-~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~   72 (240)
                      ++.+.|++|...+.|. +.+|-+| |||||..|+..-.++. +-++.|+.+++..
T Consensus        12 g~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~-~H~~~H~Yrim~~   65 (438)
T KOG0457|consen   12 GGKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAETG-KHQNDHPYRIMDT   65 (438)
T ss_pred             CCCCCCccHhHHhccceEEEeecCCCcchhHHHHhcccccC-CCCCCCCceeecC
Confidence            4689999999999887 4999999 7999999998644332 1134577777654

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=92.73  E-value=0.081  Score=34.30  Aligned_cols=30  Identities=20%  Similarity=0.506  Sum_probs=27.1

Q ss_pred             ccccccCCCCCceeEEcCCC-Cccccccccc
Q 040047           80 FLCNACGEPGSAFSFCCPLC-DFDLHVQCAF  109 (240)
Q Consensus        80 ~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~  109 (240)
                      +.|+.||......+|+|... +++|++.|..
T Consensus         1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~   31 (45)
T cd02336           1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ   31 (45)
T ss_pred             CcccCCCCccCceEEEecCCCccccChHHHh
Confidence            36999999998999999998 7999999985

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.20  E-value=0.04  Score=54.34  Aligned_cols=86  Identities=21%  Similarity=0.459  Sum_probs=60.4

Q ss_pred             CcccccccccCCCC--c-eEeeCCCCCcchhhhcccccc----ccC-----------CCCCC-cceEEeeccCCCCCCcc
Q 040047           21 NEYSCSACELIISG--S-AYGCWECKFFLHEQCGNASRA----MQH-----------TSHPM-HHLTLVPTTTYSAGNFL   81 (240)
Q Consensus        21 ~~~~C~~C~~~~~g--~-~Y~C~~C~f~lH~~Ca~~p~~----i~h-----------~~Hp~-H~L~l~~~~~~~~~~~~   81 (240)
                      ....|+.|.+.++|  . +|.|..|.++.|+.|..+.-.    ...           +.++. |.+....    ..+...
T Consensus       168 Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~~~~~~Phrf~~~~----~q~ptF  243 (694)
T KOG0694|consen  168 QPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFEFTFRNPHRFVKLN----RQRPTF  243 (694)
T ss_pred             CcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCccccccccccCCCcchhhh----ccCccH
Confidence            68999999999988  3 699999999999999864211    011           11110 2221111    135789


Q ss_pred             ccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           82 CNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        82 Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      |+-||....+   -...|..|+..+|..|...
T Consensus       244 c~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~  275 (694)
T KOG0694|consen  244 CDHCGSVLYRLRQQGLKCSTCGRNVHNRCVEN  275 (694)
T ss_pred             HHhcchhhhhhcccCeeehhhhccccHHHHHh
Confidence            9999997643   4588999999999999954

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=91.35  E-value=0.19  Score=50.11  Aligned_cols=140  Identities=19%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             CCCcccccccccCCCC---ceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCCceeEE
Q 040047           19 HGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFC   95 (240)
Q Consensus        19 ~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~   95 (240)
                      +++...||.|..+-..   .---|..||.-+|..|+.....   |.-   ++.-..=.  -.....|..|-+.+...-|.
T Consensus       268 ~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~---p~g---pWlCr~Ca--lg~~ppCvLCPkkGGamK~~  339 (893)
T KOG0954|consen  268 YDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEV---PEG---PWLCRTCA--LGIEPPCVLCPKKGGAMKPT  339 (893)
T ss_pred             ccccceeceecCCCccccceeEEeccchhHHHHhhhceeec---CCC---Ceeehhcc--ccCCCCeeeccccCCccccc
Confidence            4578999999887432   2477999999999999984311   111   00000000  00122344444433222222


Q ss_pred             cCCCCcccccccccC-CceeeeCCCc--eeeEEeecCCccCCCCccceecccccccccCCcceeEEeC--CCCeeeeccc
Q 040047           96 CPLCDFDLHVQCAFL-PEILIHDSHF--HSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCF--ACNFHAHVSC  170 (240)
Q Consensus        96 C~~C~f~lH~~Ca~l-P~~i~~~~H~--H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~--~C~~~lH~~C  170 (240)
                      =+.- -..|..||.. |++. ...-.  -|++-...-+    .......|.+|....    |..-+|.  .|--.+|+.|
T Consensus       340 ~sgT-~wAHvsCALwIPEVs-ie~~ekmePItkfs~Ip----esRwslvC~LCk~k~----GACIqCs~k~C~t~fHv~C  409 (893)
T KOG0954|consen  340 KSGT-KWAHVSCALWIPEVS-IECPEKMEPITKFSHIP----ESRWSLVCNLCKVKS----GACIQCSNKTCRTAFHVTC  409 (893)
T ss_pred             CCCC-eeeEeeeeeccceee-ccCHhhcCcccccCCCc----HHHHHHHHHHhcccC----cceEEecccchhhhccchh
Confidence            1111 3478899965 5443 32211  2333222110    113457899999985    4566776  6888999999


Q ss_pred             ccCccc
Q 040047          171 TRNRNN  176 (240)
Q Consensus       171 ~~~~~~  176 (240)
                      +.....
T Consensus       410 A~~aG~  415 (893)
T KOG0954|consen  410 AFEAGL  415 (893)
T ss_pred             hhhcCC
Confidence            975553

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=89.22  E-value=0.34  Score=36.79  Aligned_cols=85  Identities=20%  Similarity=0.290  Sum_probs=54.3

Q ss_pred             cccccCCCCCceeEEcCCCCcccccccccCCceee-eCCCc-eeeEEeecCCccCCCCccceecccccccccCCcceeEE
Q 040047           81 LCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILI-HDSHF-HSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYN  158 (240)
Q Consensus        81 ~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~-~~~H~-H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~  158 (240)
                      .|..|...  +-.++-..-+-.+|..|+..-..+. ..... =+..+...     ........|.+|++..    |..-+
T Consensus         2 ~C~lC~~~--~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i-----~~~~~~~~C~iC~~~~----G~~i~   70 (110)
T PF13832_consen    2 SCVLCPKR--GGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNI-----PPSRFKLKCSICGKSG----GACIK   70 (110)
T ss_pred             ccEeCCCC--CCcccCccCCcEEEeEccceeCccEEeechhcCcccceee-----cchhcCCcCcCCCCCC----ceeEE
Confidence            57888875  3345666667889999997633322 21111 11111111     1113578999999983    66889


Q ss_pred             eCC--CCeeeecccccCccc
Q 040047          159 CFA--CNFHAHVSCTRNRNN  176 (240)
Q Consensus       159 C~~--C~~~lH~~C~~~~~~  176 (240)
                      |..  |...+|+.|+.....
T Consensus        71 C~~~~C~~~fH~~CA~~~g~   90 (110)
T PF13832_consen   71 CSHPGCSTAFHPTCARKAGL   90 (110)
T ss_pred             cCCCCCCcCCCHHHHHHCCC
Confidence            997  999999999976554

>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]

Probab=89.08  E-value=0.16  Score=50.68  Aligned_cols=45  Identities=20%  Similarity=0.331  Sum_probs=35.3

Q ss_pred             CCccccccCCC-CCceeEEcCCC-CcccccccccCCceeeeCCCc--eeeE
Q 040047           78 GNFLCNACGEP-GSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHF--HSLN  124 (240)
Q Consensus        78 ~~~~Cd~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~--H~L~  124 (240)
                      ...+|++|++. |.|++|+|..| |+|+|..|.+.-..  ..+|.  ||+.
T Consensus       602 H~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgra--ak~hk~~~pM~  650 (966)
T KOG4286|consen  602 HQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRA--AKGHKMHYPMV  650 (966)
T ss_pred             hhhhcchhhhCccceeeeeehhhcChhHHhhHhhhccc--ccCCCCCCCce
Confidence            46799999984 68999999999 99999999976543  34453  5654

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=88.77  E-value=0.3  Score=31.60  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=27.6

Q ss_pred             ccccccccCCCCceEeeCCC-CCcchhhhccc
Q 040047           23 YSCSACELIISGSAYGCWEC-KFFLHEQCGNA   53 (240)
Q Consensus        23 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~   53 (240)
                      +.|+.|+..+...+|+|..+ +++|+..|...
T Consensus         1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~   32 (45)
T cd02336           1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQE   32 (45)
T ss_pred             CcccCCCCccCceEEEecCCCccccChHHHhC
Confidence            36999999998889999998 69999999874

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.34  E-value=0.64  Score=30.13  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=28.1

Q ss_pred             ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      +|.+|++.. .. ...-.|..|+..+|..|+..+..
T Consensus         1 ~C~vC~~~~-~~-~~~i~C~~C~~~~H~~C~~~~~~   34 (51)
T PF00628_consen    1 YCPVCGQSD-DD-GDMIQCDSCNRWYHQECVGPPEK   34 (51)
T ss_dssp             EBTTTTSSC-TT-SSEEEBSTTSCEEETTTSTSSHS
T ss_pred             eCcCCCCcC-CC-CCeEEcCCCChhhCcccCCCChh
Confidence            588999943 33 67899999999999999988775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=87.99  E-value=0.51  Score=35.78  Aligned_cols=84  Identities=20%  Similarity=0.352  Sum_probs=53.2

Q ss_pred             cccccccCCCCceEeeCCCCCcchhhhccccccccCC-CCCCcceEEeeccCCCCCCccccccCCCCCceeEEcCC--CC
Q 040047           24 SCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHT-SHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPL--CD  100 (240)
Q Consensus        24 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~-~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~--C~  100 (240)
                      .|-.|...  |..++-..-+-.+|..|+..-..+... ....=+..+...+ .......|..|++. .|..-+|..  |.
T Consensus         2 ~C~lC~~~--~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~-~~~~~~~C~iC~~~-~G~~i~C~~~~C~   77 (110)
T PF13832_consen    2 SCVLCPKR--GGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIP-PSRFKLKCSICGKS-GGACIKCSHPGCS   77 (110)
T ss_pred             ccEeCCCC--CCcccCccCCcEEEeEccceeCccEEeechhcCcccceeec-chhcCCcCcCCCCC-CceeEEcCCCCCC
Confidence            46677664  334665666789999999864333211 1100011111111 12347899999987 678889998  99


Q ss_pred             cccccccccCC
Q 040047          101 FDLHVQCAFLP  111 (240)
Q Consensus       101 f~lH~~Ca~lP  111 (240)
                      ..+|+.||...
T Consensus        78 ~~fH~~CA~~~   88 (110)
T PF13832_consen   78 TAFHPTCARKA   88 (110)
T ss_pred             cCCCHHHHHHC
Confidence            99999999753

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=85.42  E-value=0.15  Score=49.68  Aligned_cols=43  Identities=26%  Similarity=0.669  Sum_probs=35.7

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ||.+....++  .+..|..|++-+.|.   +.+|+.|.|..|++||..
T Consensus       267 PHTf~vHSY~--rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~  312 (888)
T KOG4236|consen  267 PHTFIVHSYT--RPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMK  312 (888)
T ss_pred             CeeEEEeecc--CchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhh
Confidence            5777766665  889999998877663   699999999999999964

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.50  E-value=1.6  Score=28.21  Aligned_cols=33  Identities=27%  Similarity=0.587  Sum_probs=27.2

Q ss_pred             cccccCCCC-CceeEEcCCCCcccccccccCCce
Q 040047           81 LCNACGEPG-SAFSFCCPLCDFDLHVQCAFLPEI  113 (240)
Q Consensus        81 ~Cd~C~~~~-~g~~Y~C~~C~f~lH~~Ca~lP~~  113 (240)
                      .|.+|++.. .+....|..|+-.+|..|..++..
T Consensus         1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~   34 (51)
T PF00628_consen    1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEK   34 (51)
T ss_dssp             EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHS
T ss_pred             eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChh
Confidence            478898854 478899999999999999987643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=82.25  E-value=0.87  Score=40.50  Aligned_cols=85  Identities=18%  Similarity=0.305  Sum_probs=57.2

Q ss_pred             CccccccCCCC-----Cc---eeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccccc
Q 040047           79 NFLCNACGEPG-----SA---FSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLD  150 (240)
Q Consensus        79 ~~~Cd~C~~~~-----~g---~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~  150 (240)
                      ...||.|-...     .|   ....|++|+-.=|+.|..+...+...-    -++.|.  .     ..-..|++|++.-+
T Consensus       224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~av----k~yrwq--c-----ieck~csicgtsen  292 (336)
T KOG1244|consen  224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAV----KTYRWQ--C-----IECKYCSICGTSEN  292 (336)
T ss_pred             CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHH----Hhheee--e-----eecceeccccCcCC
Confidence            45788884332     12   346799999999999987654432210    011111  1     13468999999754


Q ss_pred             CCcceeEEeCCCCeeeecccccCccc
Q 040047          151 QKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       151 ~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      +  .-...|.+||-.+|.-|...+.+
T Consensus       293 d--dqllfcddcdrgyhmyclsppm~  316 (336)
T KOG1244|consen  293 D--DQLLFCDDCDRGYHMYCLSPPMV  316 (336)
T ss_pred             C--ceeEeecccCCceeeEecCCCcC
Confidence            2  46889999999999999998886

>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=81.62  E-value=2.1  Score=42.34  Aligned_cols=141  Identities=18%  Similarity=0.348  Sum_probs=82.5

Q ss_pred             cccccccCCCCceEeeCCCCCcchhhhcccccc---------ccCCCCC---CcceEEeeccCCCCCCccccccCCCC--
Q 040047           24 SCSACELIISGSAYGCWECKFFLHEQCGNASRA---------MQHTSHP---MHHLTLVPTTTYSAGNFLCNACGEPG--   89 (240)
Q Consensus        24 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~---------i~h~~Hp---~H~L~l~~~~~~~~~~~~Cd~C~~~~--   89 (240)
                      .|..|.....-..-.|..|+..+|..|.....+         ..+-.|.   .|..+....    ..+..|..|.+..  
T Consensus        46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~----~~~~~c~~c~~~c~~  121 (634)
T KOG1169|consen   46 VCCVCLWSEMAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHL----WKPAYCFVCPKSCGS  121 (634)
T ss_pred             hhhhhhhcccccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCC----CCCceEEeccccccc
Confidence            788887743334688999999999999875321         1122221   233333222    2356777776653  


Q ss_pred             C----ceeEEcCCCCcccccccccCCce--eee--CCCceeeEEeecCCccCCCCccceeccccccccc--CCcceeEEe
Q 040047           90 S----AFSFCCPLCDFDLHVQCAFLPEI--LIH--DSHFHSLNLSYALPAAHHYESSSYVCDICHKQLD--QKCFWSYNC  159 (240)
Q Consensus        90 ~----g~~Y~C~~C~f~lH~~Ca~lP~~--i~~--~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~--~~~~~~Y~C  159 (240)
                      .    +..+.|.-|.+.+|..|...+.+  ...  ..+--.+.+  ......+ ......|+.|.+.+.  .+ ...++|
T Consensus       122 ~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~c  197 (634)
T KOG1169|consen  122 CGVGIKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVL--DHPWVKG-NAGEAKCDQCLKSVKADQG-LTGPRC  197 (634)
T ss_pred             hhhcccCceeeccccchHHHHHHhhcCcccccccccccccceee--cCccccc-ccCCccchhhhcccccccc-cccccc
Confidence            1    23489999999999999965322  111  000001111  1000000 124677888888643  23 458899


Q ss_pred             CCCCeeeeccccc
Q 040047          160 FACNFHAHVSCTR  172 (240)
Q Consensus       160 ~~C~~~lH~~C~~  172 (240)
                      .+|...+|..|..
T Consensus       198 ~~~~~~~h~~~~~  210 (634)
T KOG1169|consen  198 GWCQIRVHDKCKS  210 (634)
T ss_pred             ceeeeeeecchHH
Confidence            9999999999954

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]

Probab=81.01  E-value=0.64  Score=42.32  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCccccCCCCC
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNSDSAKP  182 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~~~~~~p  182 (240)
                      +...|-+|+.... + ..+|+|..|.-.+++.|-.....+-+..|
T Consensus       329 ~~~~Cf~C~~~~~-~-~~~y~C~~Ck~~FCldCDv~iHesLh~Cp  371 (378)
T KOG2807|consen  329 GSRFCFACQGELL-S-SGRYRCESCKNVFCLDCDVFIHESLHNCP  371 (378)
T ss_pred             CCcceeeeccccC-C-CCcEEchhccceeeccchHHHHhhhhcCC
Confidence            4456999954432 2 56999999998899888766555444444

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=80.96  E-value=0.89  Score=41.33  Aligned_cols=49  Identities=20%  Similarity=0.375  Sum_probs=36.5

Q ss_pred             CcccccccccCCCC-ceEeeCCC-CCcchhhhcccc--ccccCCCCCCcceEEeec
Q 040047           21 NEYSCSACELIISG-SAYGCWEC-KFFLHEQCGNAS--RAMQHTSHPMHHLTLVPT   72 (240)
Q Consensus        21 ~~~~C~~C~~~~~g-~~Y~C~~C-~f~lH~~Ca~~p--~~i~h~~Hp~H~L~l~~~   72 (240)
                      .++-||.|...+.. .+-+|.+| +|||+..|+...  ..+.||+|   +.+....
T Consensus         4 ~k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH---~YRiiet   56 (432)
T COG5114           4 VKIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYH---GYRIIET   56 (432)
T ss_pred             ceeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCC---CeeEeec
Confidence            57899999888754 47999999 999999999753  33455565   5555443

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=80.22  E-value=0.95  Score=44.60  Aligned_cols=33  Identities=18%  Similarity=0.494  Sum_probs=28.8

Q ss_pred             CcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047           21 NEYSCSACELIISGSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ...+|+.|..+++-.+++|..|+|-+|+.|+..
T Consensus       188 ~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~  220 (678)
T KOG0193|consen  188 PLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPR  220 (678)
T ss_pred             chhhhhhhcchhhhcccccCCCCCccccccCCC
Confidence            678899887777767899999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
1v5n_A	89	Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth		2e-05

>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 55  RAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAF 109
           + ++H  H  H L L     Y+     C+ C E G+ +S+ C  CDFDLH +CA 
Sbjct: 28  KKVKHVLHEEHELELTRVQVYT-----CDKCEEEGTIWSYHCDECDFDLHAKCAL 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	2e-18
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	2e-10
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	2e-06

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 76.1 bits (187), Expect = 2e-18
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 39  CWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPL 98
             E +    E   +  + ++H  H  H L L     Y+     C+ C E G+ +S+ C  
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYT-----CDKCEEEGTIWSYHCDE 66

Query: 99  CDFDLHVQCAFLPEILIHDS 118
           CDFDLH +CA   +      
Sbjct: 67  CDFDLHAKCALNEDTKESGP 86

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 13/79 (16%)

Query: 96  CPLCDFDLHVQCAFLPEILIHDSH-FHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCF 154
               +          P+ + H  H  H L L+             Y CD C ++      
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR---------VQVYTCDKCEEEG---TI 59

Query: 155 WSYNCFACNFHAHVSCTRN 173
           WSY+C  C+F  H  C  N
Sbjct: 60  WSYHCDECDFDLHAKCALN 78

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4  KHFSHP-HNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQH 59
          KH  H  H L    +     Y+C  CE   +  +Y C EC F LH +C       + 
Sbjct: 31 KHVLHEEHELE---LTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDTKES 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.66
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.42
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.23
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	98.16
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	98.12
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	97.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	97.83
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	97.76
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	97.45
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	97.39
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	97.34
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	97.32
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	97.29
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	97.29
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	97.28
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	97.25
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	97.22
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	97.21
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	97.2
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	97.19
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	97.13
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	97.11
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	97.09
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	97.03
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	96.7
1kbe_A	49	Kinase suppressor of RAS; KSR, cysteine-rich domai	96.51
1ptq_A	50	Protein kinase C delta type; phosphotransferase; 1	96.48
2enz_A	65	NPKC-theta, protein kinase C theta type; zinc bind	96.29
1faq_A	52	RAF-1; transferase, serine/threonine-protein kinas	96.23
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	96.2
1rfh_A	59	RAS association (ralgds/AF-6) domain family 5; zin	96.19
2eli_A	85	Protein kinase C alpha type; PKC-alpha, PKC-A, str	96.12
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	96.11
1y8f_A	66	UNC-13 homolog A, MUNC13-1; cysteine-rich domain,	96.1
3uej_A	65	NPKC-delta, protein kinase C delta type; proteine	96.09
2db6_A	74	SH3 and cysteine rich domain 3; STAC3, C1 domain,	96.09
2fnf_X	72	Putative RAS effector NORE1; zinc, signal transduc	95.98
2yuu_A	83	NPKC-delta, protein kinase C delta type; metal bin	95.93
2enn_A	77	NPKC-theta, protein kinase C theta type; zinc bind	95.88
2row_A	84	RHO-associated protein kinase 2; ATP-binding, coil	95.13
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	94.17
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	93.81
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	93.53
1r79_A	84	Diacylglycerol kinase, delta; C1 domain, cystein-r	93.48
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	92.55
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	91.91
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	91.78
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	91.52
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	89.8
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.04
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	87.62
1r79_A	84	Diacylglycerol kinase, delta; C1 domain, cystein-r	86.21
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	84.92
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	83.19
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	81.62
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	81.37
2yt5_A	66	Metal-response element-binding transcription facto	80.46

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.66  E-value=4.2e-17  Score=120.47  Aligned_cols=67  Identities=30%  Similarity=0.641  Sum_probs=60.9

Q ss_pred             CCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccCCce
Q 040047           42 CKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEI  113 (240)
Q Consensus        42 C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~  113 (240)
                      ++..||+.|+++|++|.|++||+|+|+|...+     .+.|++|++.+.+|+|+|..|+|+||+.||.+|..
T Consensus        15 ~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~-----~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~~   81 (89)
T 1v5n_A           15 IEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ-----VYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT   81 (89)
T ss_dssp             HHHHHHHHTSSSCSEECCSTTTTSCEEEECCS-----SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred             HHHHHhHHHHcCCceecCCCCCCCccEEeeCC-----CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCCc
Confidence            45689999999999999999999999998653     58999999999999999999999999999998754

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.42  E-value=2.8e-14  Score=105.28  Aligned_cols=66  Identities=29%  Similarity=0.615  Sum_probs=58.2

Q ss_pred             CCcccccccccCCceeeeCCCc-eeeEEeecCCccCCCCccceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047           99 CDFDLHVQCAFLPEILIHDSHF-HSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus        99 C~f~lH~~Ca~lP~~i~~~~H~-H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      ++..+|..|+.+|..|+|+.|+ |+|+|.+..         .++|++|++.+.   +|+|+|..|+|++|+.|+..+..
T Consensus        15 ~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~---------~~~C~~C~~~~~---~~~Y~C~~C~f~lH~~Ca~~p~~   81 (89)
T 1v5n_A           15 IEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ---------VYTCDKCEEEGT---IWSYHCDECDFDLHAKCALNEDT   81 (89)
T ss_dssp             HHHHHHHHTSSSCSEECCSTTTTSCEEEECCS---------SCCCTTTSCCCC---SCEEECTTTCCCCCHHHHHCSSC
T ss_pred             HHHHHhHHHHcCCceecCCCCCCCccEEeeCC---------CeEeCCCCCcCC---CcEEEcCCCCCeEcHHhcCCCCc
Confidence            4568999999999999999996 999998752         479999999863   89999999999999999987765

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.23  E-value=4.2e-07  Score=88.51  Aligned_cols=95  Identities=20%  Similarity=0.498  Sum_probs=33.9

Q ss_pred             CCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccccccc--------c-CCCCCCcceEEeeccCCCC
Q 040047           10 HNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNASRAM--------Q-HTSHPMHHLTLVPTTTYSA   77 (240)
Q Consensus        10 H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p~~i--------~-h~~Hp~H~L~l~~~~~~~~   77 (240)
                      |.+......  .+..|+.|+..|+|   .+|+|..|++.+|+.|.......        . ......|.+.....+    
T Consensus        38 H~f~~~~~~--~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~----  111 (674)
T 3pfq_A           38 HKFTARFFK--QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYS----  111 (674)
T ss_dssp             ------------------------------------------------------------------CCCCCEECCS----
T ss_pred             ceEEeeeCC--CCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCC----
Confidence            665554443  67899999999998   47999999999999998753210        0 011124677665543    


Q ss_pred             CCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           78 GNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      ....|+.|++.+.|   ..|+|..|++.+|.+|...
T Consensus       112 ~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~  147 (674)
T 3pfq_A          112 SPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMN  147 (674)
T ss_dssp             SCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSS
T ss_pred             CCCCCCccccccchhhcCccccccCCcchhhhhhhc
Confidence            36799999998654   5799999999999999964

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=98.16  E-value=2e-06  Score=62.00  Aligned_cols=51  Identities=20%  Similarity=0.546  Sum_probs=40.2

Q ss_pred             Cccccccccc-CCCCceEeeCCC-C---CcchhhhccccccccCCCC-CCcceEEeecc
Q 040047           21 NEYSCSACEL-IISGSAYGCWEC-K---FFLHEQCGNASRAMQHTSH-PMHHLTLVPTT   73 (240)
Q Consensus        21 ~~~~C~~C~~-~~~g~~Y~C~~C-~---f~lH~~Ca~~p~~i~h~~H-p~H~L~l~~~~   73 (240)
                      ..+.||+|.. +|.|.+|+|.+| |   |||+..|.......  ..| |.|+|+....+
T Consensus        20 ~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~--~~H~~~H~~~~i~~~   76 (82)
T 2fc7_A           20 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHET--DIHKEDHQLEPIYRS   76 (82)
T ss_dssp             SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCC--SSCCSSSCEEEECSC
T ss_pred             CcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcccc--CCCCCCCCEEEeeCC
Confidence            4679999985 899999999999 7   99999999864322  234 57888877654

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=98.12  E-value=1e-06  Score=65.72  Aligned_cols=46  Identities=28%  Similarity=0.634  Sum_probs=38.0

Q ss_pred             Cccccccccc-CCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEeec
Q 040047           21 NEYSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVPT   72 (240)
Q Consensus        21 ~~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~   72 (240)
                      ....||+|+. +|.|.+|+|..| ||||+..|....   .   |+.|+|.....
T Consensus        30 ~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~---~---H~~H~f~~i~~   77 (98)
T 2dip_A           30 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY---C---HLSHTFTFREK   77 (98)
T ss_dssp             CCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT---S---GGGSCEEECCS
T ss_pred             CCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC---C---CCCCCeeEecC
Confidence            3489999986 799999999999 999999998865   2   56788877544

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=5.5e-06  Score=56.76  Aligned_cols=46  Identities=26%  Similarity=0.539  Sum_probs=36.8

Q ss_pred             cccccccc-CCCCceEeeCCC-CCcchhhhccccccc-cCCCCCCcceEEe
Q 040047           23 YSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAM-QHTSHPMHHLTLV   70 (240)
Q Consensus        23 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i-~h~~Hp~H~L~l~   70 (240)
                      ..||+|+. +|.|.+|+|.+| ||||+..|....... .|.  +.|++...
T Consensus        12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~--~~H~~~~~   60 (63)
T 2e5r_A           12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHS--NQHQMKEY   60 (63)
T ss_dssp             SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSC--TTCCEEEE
T ss_pred             CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCC--CCCCEEEE
Confidence            78999986 599999999999 999999999875433 332  35787754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=97.83  E-value=6.7e-06  Score=80.00  Aligned_cols=100  Identities=22%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccCCcee---e---e----CCCceeeEEeecCC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFLPEIL---I---H----DSHFHSLNLSYALP  130 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~lP~~i---~---~----~~H~H~L~l~~~~~  130 (240)
                      .|.|+.....    ....|+.|+..+.|   -.|+|..|++.+|..|.......   .   .    +.-.|.+.....  
T Consensus        37 ~H~f~~~~~~----~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~--  110 (674)
T 3pfq_A           37 NHKFTARFFK----QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTY--  110 (674)
T ss_dssp             ---------------------------------------------------------------------CCCCCEECC--
T ss_pred             CceEEeeeCC----CCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCC--
Confidence            4666554321    36789999998765   46999999999999998642110   0   0    111244433222  


Q ss_pred             ccCCCCccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          131 AAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       131 ~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                            .....|+.|++.+.+-..-.|+|.+|++.+|.+|.....
T Consensus       111 ------~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~  149 (674)
T 3pfq_A          111 ------SSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVP  149 (674)
T ss_dssp             ------SSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSC
T ss_pred             ------CCCCCCCccccccchhhcCccccccCCcchhhhhhhccC
Confidence                  145699999998642103599999999999999985443

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=97.76  E-value=8.3e-06  Score=53.70  Aligned_cols=44  Identities=23%  Similarity=0.528  Sum_probs=35.5

Q ss_pred             CcccccccccCCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEeec
Q 040047           21 NEYSCSACELIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVPT   72 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~   72 (240)
                      ..+.||+|...+ |.+|+|.+| ||||+..|.....      | .|++.....
T Consensus         5 ~~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~------H-~H~m~~~~~   49 (52)
T 1tot_A            5 FVYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS------H-THKMVKWGL   49 (52)
T ss_dssp             SCEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC------C-CSSEEEECS
T ss_pred             CEEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC------C-CCceEEecC
Confidence            457899999886 889999999 8999999998632      4 578876543

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=97.45  E-value=8.6e-05  Score=47.88  Aligned_cols=42  Identities=21%  Similarity=0.667  Sum_probs=33.9

Q ss_pred             CCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccc
Q 040047           10 HNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        10 H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      |.+......  .+..|+.|+..|+|   .+|+|..|++.+|+.|...
T Consensus         1 H~F~~~~~~--~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T 1ptq_A            1 HRFKVYNYM--SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             CCEEEECCS--SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CCCEeecCC--CCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence            334444433  78999999999998   4799999999999999985

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=97.39  E-value=0.00013  Score=49.80  Aligned_cols=44  Identities=23%  Similarity=0.677  Sum_probs=37.4

Q ss_pred             CCCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccc
Q 040047            8 HPHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         8 H~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .+|.+......  .+..|+.|...|+|   .+|+|..|++.+|+.|...
T Consensus        11 ~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   57 (65)
T 2enz_A           11 MPHRFKVYNYK--SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK   57 (65)
T ss_dssp             CCCCEEECCCC--SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred             CCCccEeEcCC--CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence            35777776654  78999999999998   3799999999999999985

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=97.34  E-value=3.9e-05  Score=50.45  Aligned_cols=41  Identities=29%  Similarity=0.656  Sum_probs=33.8

Q ss_pred             CccccccCCCCCceeEEcCCC-CcccccccccCCceeeeCCCceeeEEe
Q 040047           79 NFLCNACGEPGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLNLS  126 (240)
Q Consensus        79 ~~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~l~  126 (240)
                      .+.||.|++.+ |.+|+|..| +|||+..|....      .|.|++.-.
T Consensus         6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~------~H~H~m~~~   47 (52)
T 1tot_A            6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK------SHTHKMVKW   47 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH------CCCSSEEEE
T ss_pred             EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCC------CCCCceEEe
Confidence            57899999985 899999999 999999998753      256877543

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.32  E-value=8.4e-05  Score=52.25  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             cCCCCCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhcccc
Q 040047            5 HFSHPHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus         5 H~~H~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      +....|.+......  .+..|+.|...|+|   .+|+|..|++.+|+.|....
T Consensus        13 ~~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v   63 (74)
T 2db6_A           13 VNDKPHKFKDHFFK--KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYV   63 (74)
T ss_dssp             SCSSBCCEEEEECS--SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGG
T ss_pred             ccCCCCceEEeeCC--CCcCchhcChhhccccCCccccCCCCCccChhHHhhC
Confidence            33445888877765  78999999999998   37999999999999999853

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.29  E-value=0.00014  Score=52.21  Aligned_cols=47  Identities=23%  Similarity=0.564  Sum_probs=38.9

Q ss_pred             cCCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            5 HFSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         5 H~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      |....|.+......  .+..|+.|...|+|.   +|+|..|+|.+|+.|...
T Consensus        13 ~~~~~H~F~~~~~~--~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~   62 (83)
T 2yuu_A           13 HYIKNHEFIATFFG--QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK   62 (83)
T ss_dssp             ECGGGCCEEEECCS--SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred             cccCCCceEeEeCC--CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence            33445877776654  789999999999983   799999999999999985

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=8.6e-05  Score=50.72  Aligned_cols=45  Identities=22%  Similarity=0.541  Sum_probs=34.8

Q ss_pred             CccccccCCC-CCceeEEcCCC-CcccccccccCCceeeeCCCc--eeeEE
Q 040047           79 NFLCNACGEP-GSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHF--HSLNL  125 (240)
Q Consensus        79 ~~~Cd~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~--H~L~l  125 (240)
                      ...||+|+.. +.|.+|+|..| ||||+..|......  ...|.  |++..
T Consensus        11 ~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~--~~~H~~~H~~~~   59 (63)
T 2e5r_A           11 PVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA--GGSHSNQHQMKE   59 (63)
T ss_dssp             CSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC--CSSSCTTCCEEE
T ss_pred             CCCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc--CCCCCCCCCEEE
Confidence            3789999986 88999999999 99999999876532  23343  76643

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=97.28  E-value=0.00014  Score=49.95  Aligned_cols=43  Identities=28%  Similarity=0.652  Sum_probs=37.3

Q ss_pred             CCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +|.+......  .+..|+.|...|+|   .+|+|..|+|.+|+.|...
T Consensus        13 ~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   58 (66)
T 1y8f_A           13 QHNFEVWTAT--TPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL   58 (66)
T ss_dssp             CCCEEEEECS--SCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred             CcccEeeeCC--CCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence            5777776655  78999999999998   3799999999999999885

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=97.25  E-value=0.00017  Score=49.30  Aligned_cols=43  Identities=21%  Similarity=0.637  Sum_probs=36.6

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +|.+......  .+..|+.|+..|+|.   +|+|..|+|..|+.|+..
T Consensus         9 ~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   54 (65)
T 3uej_A            9 SHRFKVYNYM--SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   54 (65)
T ss_dssp             ECCEEEECCS--SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEeEeCC--CCCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence            4777766654  789999999999873   799999999999999985

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.22  E-value=0.00026  Score=51.03  Aligned_cols=47  Identities=21%  Similarity=0.456  Sum_probs=39.4

Q ss_pred             CCCCCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhcccc
Q 040047            6 FSHPHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus         6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      +.-+|.+......  .+..|+.|...|+|   .+|+|..|++.+|+.|....
T Consensus        14 ~~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v   63 (85)
T 2eli_A           14 PRSKHKFKIHTYG--SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINV   63 (85)
T ss_dssp             TTTSCCCEEECCS--SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTS
T ss_pred             CCCCcccEeeeCC--CCcCCcccCccccccccCCCcCCCcCCccCHhHHhhc
Confidence            3345888777665  78999999999998   47999999999999999853

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=97.21  E-value=0.00024  Score=46.14  Aligned_cols=42  Identities=21%  Similarity=0.584  Sum_probs=35.8

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .|.+......  .+..|+.|+..++ .+|+|..|++..|+.|...
T Consensus         3 ~H~F~~~~~~--~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~   44 (52)
T 1faq_A            3 THNFARKTFL--KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCS--SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             CceeEeEeCC--CCcCCCCcccccc-cCCEeCCCCCeEChhHHhh
Confidence            3666665554  7899999999998 7999999999999999985

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=97.20  E-value=0.00018  Score=53.41  Aligned_cols=43  Identities=23%  Similarity=0.528  Sum_probs=34.4

Q ss_pred             CccccccCC-CCCceeEEcCCC-CcccccccccCCceeeeCCCceeeEEe
Q 040047           79 NFLCNACGE-PGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLNLS  126 (240)
Q Consensus        79 ~~~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~l~  126 (240)
                      ...||.|+. .+.|.+|+|..| ||||+..|.....   |.  .|++...
T Consensus        31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~---H~--~H~f~~i   75 (98)
T 2dip_A           31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC---HL--SHTFTFR   75 (98)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS---GG--GSCEEEC
T ss_pred             CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC---CC--CCCeeEe
Confidence            489999997 578999999999 9999999987652   32  3766543

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=97.19  E-value=0.00012  Score=51.76  Aligned_cols=46  Identities=22%  Similarity=0.510  Sum_probs=37.8

Q ss_pred             CCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            6 FSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ....|.+......  .+..|+.|...|+|.   +|.|..|+|.+|+.|...
T Consensus        20 ~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~   68 (77)
T 2enn_A           20 HVKCHEFTATFFP--QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK   68 (77)
T ss_dssp             ESSSCEEEEECCS--SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred             cCCCCccEEEcCC--CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence            3445776666554  789999999999973   799999999999999985

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=97.13  E-value=0.00025  Score=47.65  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=37.0

Q ss_pred             CCCCCee-eeecCCCcccccccccCCCCceEeeCCCCCcchhhhcccc
Q 040047            8 HPHNLRI-YQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus         8 H~H~L~l-~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      .+|.+.. ....  .+..|+.|+..|+..+|+|..|+|..|+.|.+..
T Consensus         9 ~~H~F~~~~~~~--~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~v   54 (59)
T 1rfh_A            9 EGHRFVELALRG--GPGWCDLCGREVLRQALRCANCKFTCHSECRSLI   54 (59)
T ss_dssp             SSCCCEECCCSS--CCEECTTTCSEECSCCEECTTTSCEECHHHHTTC
T ss_pred             CCCcCeeeeccC--CCeEchhcchhhhhCccEeCCCCCeEehhhhhhC
Confidence            4577766 5544  7899999999886668999999999999999853

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=97.11  E-value=0.00035  Score=50.15  Aligned_cols=48  Identities=29%  Similarity=0.587  Sum_probs=37.1

Q ss_pred             CccccccCC-CCCceeEEcCCC-C---cccccccccCCceeeeCCCc--eeeEEeec
Q 040047           79 NFLCNACGE-PGSAFSFCCPLC-D---FDLHVQCAFLPEILIHDSHF--HSLNLSYA  128 (240)
Q Consensus        79 ~~~Cd~C~~-~~~g~~Y~C~~C-~---f~lH~~Ca~lP~~i~~~~H~--H~L~l~~~  128 (240)
                      .+.||.|+. .+.|.+|+|..| +   |||+..|...-..  ...|.  |++.....
T Consensus        21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~--~~~H~~~H~~~~i~~   75 (82)
T 2fc7_A           21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE--TDIHKEDHQLEPIYR   75 (82)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC--CSSCCSSSCEEEECS
T ss_pred             cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc--cCCCCCCCCEEEeeC
Confidence            679999997 578999999999 7   9999999976422  23342  88876654

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=97.09  E-value=0.0003  Score=45.58  Aligned_cols=42  Identities=17%  Similarity=0.457  Sum_probs=34.0

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhcccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      +|.+...+..   ...|+.|++.|+ .+|+|.+|+|..|.+|+...
T Consensus         4 ~HrF~~~t~~---~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~v   45 (49)
T 1kbe_A            4 THRFSTKSWL---SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKEA   45 (49)
T ss_dssp             CCCEEEECCS---SCCCSSSCCSSC-CEEEETTTTEEESSSCTTTS
T ss_pred             CcccCccCCC---CcCccccCceeE-CcCCCCCCCCccchhhcCcC
Confidence            4666665543   489999999998 46999999999999999843

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=97.03  E-value=0.0005  Score=48.08  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=36.9

Q ss_pred             CCCCCee-eeecCCCcccccccccCCCCceEeeCCCCCcchhhhcccc
Q 040047            8 HPHNLRI-YQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus         8 H~H~L~l-~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      .+|.+.. ....  .+..|+.|+..|...+|+|..|+|..|+.|....
T Consensus        22 ~~H~F~~~~~~~--~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~V   67 (72)
T 2fnf_X           22 EGHRFVELALRG--GPGWCDLCGREVLRQALRCANCKFTCHSECRSLI   67 (72)
T ss_dssp             SSCCCEECCCCS--SCCBCTTTSSBCSSCCEECTTSSCEECTGGGGGC
T ss_pred             CCCccceeecCC--CCcchhhhhHHHHhCcCccCCCCCeechhhhccC
Confidence            4577666 5443  7899999999986668999999999999999853

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=96.70  E-value=0.00042  Score=49.98  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             CCCeeeeecCCCcccccccccCCCCc-----eEeeCCCCCcchhhhcc
Q 040047           10 HNLRIYQVQHGNEYSCSACELIISGS-----AYGCWECKFFLHEQCGN   52 (240)
Q Consensus        10 H~L~l~~~~~~~~~~C~~C~~~~~g~-----~Y~C~~C~f~lH~~Ca~   52 (240)
                      |.+......  .+..|+.|+..|||.     +|.|..|+|.+|+.|..
T Consensus        25 H~F~~~~~~--~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~   70 (84)
T 2row_A           25 HEFIPTLYH--FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD   70 (84)
T ss_dssp             EEEEEECCS--SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred             cceEeEcCC--CCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence            555444443  789999999999984     89999999999999998

>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A

Probab=96.51  E-value=0.0025  Score=41.19  Aligned_cols=40  Identities=23%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             cceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047           65 HHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      |.|+..+..     ...|+.|++.+. +.|+|.+|+|..|.+|+..
T Consensus         5 HrF~~~t~~-----~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~   44 (49)
T 1kbe_A            5 HRFSTKSWL-----SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCEEEECCS-----SCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             cccCccCCC-----CcCccccCceeE-CcCCCCCCCCccchhhcCc
Confidence            677665431     378999999886 4589999999999999974

>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*

Probab=96.48  E-value=0.002  Score=41.22  Aligned_cols=33  Identities=21%  Similarity=0.532  Sum_probs=28.7

Q ss_pred             CCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           78 GNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .+..|+.|++.+.|   ..|+|.+|++.+|..|+..
T Consensus        10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T 1ptq_A           10 SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence            46899999998765   5799999999999999864

>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=96.29  E-value=0.0042  Score=42.20  Aligned_cols=43  Identities=19%  Similarity=0.466  Sum_probs=34.9

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    .+..|+.|+..+.|   ..|+|..|++.+|.+|+..
T Consensus        12 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   57 (65)
T 2enz_A           12 PHRFKVYNYK----SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK   57 (65)
T ss_dssp             CCCEEECCCC----SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred             CCccEeEcCC----CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence            5788776542    47899999998765   5699999999999999864

>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A

Probab=96.23  E-value=0.0037  Score=40.35  Aligned_cols=42  Identities=19%  Similarity=0.451  Sum_probs=33.9

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|++.+. ..|+|..|++.+|.+|...
T Consensus         3 ~H~F~~~~~~----~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~   44 (52)
T 1faq_A            3 THNFARKTFL----KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCS----SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             CceeEeEeCC----CCcCCCCcccccc-cCCEeCCCCCeEChhHHhh
Confidence            4677665442    4789999999876 6899999999999999864

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=96.20  E-value=0.006  Score=41.13  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR  174 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~  174 (240)
                      ....|++|++.+.-+ .+.|+|.+|++..|..|...-
T Consensus        18 ~~~~C~~Cg~~i~~g-kq~~kC~dC~~~cH~~C~~~~   53 (61)
T 4b6d_A           18 KPESCVPCGKRIKFG-KLSLKCRDCRVVSHPECRDRC   53 (61)
T ss_dssp             SCEECTTTCCEECTT-CEEEEESSSSCEECGGGGGGS
T ss_pred             CCcccccccCEEEEe-eEeeECCCCCCeEchhHhhcC
Confidence            347999999988544 589999999999999996543

>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}

Probab=96.19  E-value=0.0034  Score=41.96  Aligned_cols=43  Identities=26%  Similarity=0.529  Sum_probs=34.6

Q ss_pred             CcceEE-eeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047           64 MHHLTL-VPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l-~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|.. ...    .....|+.|+..+....|+|.+|+|.+|.+|...
T Consensus        10 ~H~F~~~~~~----~~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~   53 (59)
T 1rfh_A           10 GHRFVELALR----GGPGWCDLCGREVLRQALRCANCKFTCHSECRSL   53 (59)
T ss_dssp             SCCCEECCCS----SCCEECTTTCSEECSCCEECTTTSCEECHHHHTT
T ss_pred             CCcCeeeecc----CCCeEchhcchhhhhCccEeCCCCCeEehhhhhh
Confidence            477776 443    2478999999988666799999999999999864

>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.12  E-value=0.0089  Score=42.84  Aligned_cols=43  Identities=23%  Similarity=0.559  Sum_probs=35.5

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|+..+.|   ..|+|..|++.+|..|+..
T Consensus        17 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~   62 (85)
T 2eli_A           17 KHKFKIHTYG----SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN   62 (85)
T ss_dssp             SCCCEEECCS----SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred             CcccEeeeCC----CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence            5888876543    47899999998765   5799999999999999964

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=96.11  E-value=0.0038  Score=42.14  Aligned_cols=43  Identities=26%  Similarity=0.545  Sum_probs=34.1

Q ss_pred             CCCCeeeeecCCCcccccccccCC-CC-ceEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELII-SG-SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~-~g-~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +|.+.-.+..  ....|+.|+..| +| .+|+|.+|++..|+.|-+.
T Consensus         8 ~H~F~~kt~~--~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~   52 (61)
T 4b6d_A            8 LHDFVSKTVI--KPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDR   52 (61)
T ss_dssp             CCCEEEEECC--SCEECTTTCCEECTTCEEEEESSSSCEECGGGGGG
T ss_pred             ceeEEeeecc--CCcccccccCEEEEeeEeeECCCCCCeEchhHhhc
Confidence            4665555543  679999998887 45 4799999999999999874

>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}

Probab=96.10  E-value=0.0052  Score=41.88  Aligned_cols=43  Identities=21%  Similarity=0.388  Sum_probs=35.0

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|+..+.|   ..|+|.+|+|.+|..|+..
T Consensus        13 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   58 (66)
T 1y8f_A           13 QHNFEVWTAT----TPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL   58 (66)
T ss_dssp             CCCEEEEECS----SCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred             CcccEeeeCC----CCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence            4788776543    47899999998865   5699999999999999853

>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*

Probab=96.09  E-value=0.0041  Score=42.20  Aligned_cols=43  Identities=19%  Similarity=0.444  Sum_probs=34.3

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|......    ....|+.|+..+.|   ..|+|..|++.+|.+|+..
T Consensus         9 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~   54 (65)
T 3uej_A            9 SHRFKVYNYM----SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   54 (65)
T ss_dssp             ECCEEEECCS----SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEeEeCC----CCCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence            4777765442    47799999998765   5799999999999999964

>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.09  E-value=0.0056  Score=42.72  Aligned_cols=43  Identities=19%  Similarity=0.403  Sum_probs=36.0

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|++.+.|   ..|+|..|++.+|.+|+..
T Consensus        17 ~H~F~~~~f~----~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~   62 (74)
T 2db6_A           17 PHKFKDHFFK----KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY   62 (74)
T ss_dssp             BCCEEEEECS----SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred             CCceEEeeCC----CCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence            5888877653    47899999998876   5799999999999999863

>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}

Probab=95.98  E-value=0.0059  Score=42.51  Aligned_cols=43  Identities=26%  Similarity=0.529  Sum_probs=34.5

Q ss_pred             CcceEE-eeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047           64 MHHLTL-VPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l-~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|.. ...    .....|+.|+..+....|+|..|+|.+|.+|..+
T Consensus        23 ~H~F~~~~~~----~~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~   66 (72)
T 2fnf_X           23 GHRFVELALR----GGPGWCDLCGREVLRQALRCANCKFTCHSECRSL   66 (72)
T ss_dssp             SCCCEECCCC----SSCCBCTTTSSBCSSCCEECTTSSCEECTGGGGG
T ss_pred             CCccceeecC----CCCcchhhhhHHHHhCcCccCCCCCeechhhhcc
Confidence            477776 433    2478999999988666799999999999999864

>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.93  E-value=0.0072  Score=43.08  Aligned_cols=43  Identities=16%  Similarity=0.341  Sum_probs=35.2

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|......    ....|+.|+..+.|   ..|+|..|+|.+|..|...
T Consensus        17 ~H~F~~~~~~----~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~   62 (83)
T 2yuu_A           17 NHEFIATFFG----QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK   62 (83)
T ss_dssp             GCCEEEECCS----SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred             CCceEeEeCC----CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence            5788766542    47899999998865   4799999999999999975

>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}

Probab=95.88  E-value=0.007  Score=42.56  Aligned_cols=43  Identities=21%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|+..+.|   ..|.|..|+|.+|..|...
T Consensus        23 ~H~F~~~~f~----~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~   68 (77)
T 2enn_A           23 CHEFTATFFP----QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK   68 (77)
T ss_dssp             SCEEEEECCS----SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred             CCccEEEcCC----CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence            5888776542    47899999998764   5699999999999999864

>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=95.13  E-value=0.0091  Score=42.88  Aligned_cols=44  Identities=20%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             CCCcceEEeeccCCCCCCccccccCCCCCce-----eEEcCCCCccccccccc
Q 040047           62 HPMHHLTLVPTTTYSAGNFLCNACGEPGSAF-----SFCCPLCDFDLHVQCAF  109 (240)
Q Consensus        62 Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~-----~Y~C~~C~f~lH~~Ca~  109 (240)
                      +..|.|......    ....|+.|+..+.|+     .|.|..|+|.+|.+|..
T Consensus        22 ~~~H~F~~~~~~----~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~   70 (84)
T 2row_A           22 HKGHEFIPTLYH----FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD   70 (84)
T ss_dssp             ETTEEEEEECCS----SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred             cCCcceEeEcCC----CCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence            346787766442    478999999987653     89999999999999987

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=94.17  E-value=0.062  Score=40.02  Aligned_cols=82  Identities=21%  Similarity=0.423  Sum_probs=56.7

Q ss_pred             CCccccccCCCCC-ceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCC-ccceecccccccccCCcce
Q 040047           78 GNFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYE-SSSYVCDICHKQLDQKCFW  155 (240)
Q Consensus        78 ~~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~-~~~~~C~vC~~~~~~~~~~  155 (240)
                      ....|.+|+..+. .....|..|.-.+|+.|..++...        +   ...    .+. ..-..|.+|++..+.  ..
T Consensus         6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~--------~---~~~----~W~C~~C~~C~~C~~~~~~--~~   68 (111)
T 2ysm_A            6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP--------L---KRA----GWQCPECKVCQNCKQSGED--SK   68 (111)
T ss_dssp             CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT--------T---TST----TCCCTTTCCCTTTCCCSCC--TT
T ss_pred             CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc--------c---ccc----CccCCcCCcccccCccCCC--CC
Confidence            4678999998764 345789999999999999875321        1   000    000 012357778776542  35


Q ss_pred             eEEeCCCCeeeecccccCccc
Q 040047          156 SYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       156 ~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      ...|..|+-.+|..|+..+..
T Consensus        69 ll~Cd~C~~~yH~~Cl~ppl~   89 (111)
T 2ysm_A           69 MLVCDTCDKGYHTFCLQPVMK   89 (111)
T ss_dssp             EEECSSSCCEEEGGGSSSCCS
T ss_pred             eeECCCCCcHHhHHhcCCccc
Confidence            899999999999999986543

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=93.81  E-value=0.033  Score=53.10  Aligned_cols=44  Identities=25%  Similarity=0.798  Sum_probs=37.0

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhcccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      .|.+......  .+..|+.|+..++|.   +|+|..|+|.+|+.|....
T Consensus       518 ~H~F~~~~~~--~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v  564 (587)
T 3ky9_A          518 GHDFQMFSFE--ETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV  564 (587)
T ss_dssp             GCCEEEECCS--SCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS
T ss_pred             CCceeEEeCC--CCcccccccccccccccCCcCCCCCCCccchhhhhcC
Confidence            3777766554  789999999998874   7999999999999999853

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=93.53  E-value=0.043  Score=49.64  Aligned_cols=43  Identities=26%  Similarity=0.840  Sum_probs=34.9

Q ss_pred             CCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhcccc
Q 040047           10 HNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus        10 H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      |.+.....  ..+..|+.|+..++|.   +|+|..|++.+|+.|....
T Consensus       347 h~f~~~~~--~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~  392 (406)
T 2vrw_B          347 HDFQMFSF--EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV  392 (406)
T ss_dssp             CCEEEECC--SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGS
T ss_pred             CCCccccC--CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhC
Confidence            55555443  3789999999998874   7999999999999999853

>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1

Probab=93.48  E-value=0.035  Score=39.76  Aligned_cols=37  Identities=24%  Similarity=0.581  Sum_probs=29.8

Q ss_pred             cceecccccccccCCc-ceeEEeCCCCeeeecccccCc
Q 040047          138 SSYVCDICHKQLDQKC-FWSYNCFACNFHAHVSCTRNR  174 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~-~~~Y~C~~C~~~lH~~C~~~~  174 (240)
                      ...+|.+|++.+.... ...|+|.+|...+|.+|....
T Consensus        37 ~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~   74 (84)
T 1r79_A           37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL   74 (84)
T ss_dssp             TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred             CCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence            4679999999976421 468999999999999997543

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=92.55  E-value=0.35  Score=35.79  Aligned_cols=80  Identities=18%  Similarity=0.355  Sum_probs=53.9

Q ss_pred             CcccccccccCCC-CceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCC-ceeEEcCC
Q 040047           21 NEYSCSACELIIS-GSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGS-AFSFCCPL   98 (240)
Q Consensus        21 ~~~~C~~C~~~~~-g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~-g~~Y~C~~   98 (240)
                      ....|..|+.... .....|..|.-.+|..|...+...   . +.-.+.-       ..=..|.+|++... .....|..
T Consensus         6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~---~-~~~~W~C-------~~C~~C~~C~~~~~~~~ll~Cd~   74 (111)
T 2ysm_A            6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP---L-KRAGWQC-------PECKVCQNCKQSGEDSKMLVCDT   74 (111)
T ss_dssp             CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT---T-TSTTCCC-------TTTCCCTTTCCCSCCTTEEECSS
T ss_pred             CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc---c-cccCccC-------CcCCcccccCccCCCCCeeECCC
Confidence            5678999988753 234899999999999999865321   0 0000000       01125677776653 46899999


Q ss_pred             CCcccccccccCC
Q 040047           99 CDFDLHVQCAFLP  111 (240)
Q Consensus        99 C~f~lH~~Ca~lP  111 (240)
                      |+-.+|..|...|
T Consensus        75 C~~~yH~~Cl~pp   87 (111)
T 2ysm_A           75 CDKGYHTFCLQPV   87 (111)
T ss_dssp             SCCEEEGGGSSSC
T ss_pred             CCcHHhHHhcCCc
Confidence            9999999998754

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=91.91  E-value=0.11  Score=38.96  Aligned_cols=82  Identities=15%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             cccccCCCC--------CceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCC-ccceecccccccccC
Q 040047           81 LCNACGEPG--------SAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYE-SSSYVCDICHKQLDQ  151 (240)
Q Consensus        81 ~Cd~C~~~~--------~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~-~~~~~C~vC~~~~~~  151 (240)
                      .|+.|....        .+....|..|.-..|+.|+.++..+.        ..+...    ... ..-..|.+|++..+.
T Consensus         3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~--------~~~~~~----~W~C~~C~~C~~C~~~~~~   70 (114)
T 2kwj_A            3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMT--------EAVKTY----KWQCIECKSCILCGTSEND   70 (114)
T ss_dssp             CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHH--------HHHHHT----TCCCGGGCCCTTTTCCTTT
T ss_pred             cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhh--------hccCCC----ccCccccCccCcccccCCC
Confidence            588886532        24668899999999999997653211        000100    000 011367888876432


Q ss_pred             CcceeEEeCCCCeeeecccccCccc
Q 040047          152 KCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       152 ~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                        +....|..|+-.+|..|+..+..
T Consensus        71 --~~ll~Cd~C~~~yH~~Cl~ppl~   93 (114)
T 2kwj_A           71 --DQLLFCDDCDRGYHMYCLNPPVA   93 (114)
T ss_dssp             --TTEEECSSSCCEEETTTSSSCCS
T ss_pred             --CceEEcCCCCccccccccCCCcc
Confidence              56889999999999999986543

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=91.78  E-value=0.11  Score=38.81  Aligned_cols=86  Identities=17%  Similarity=0.276  Sum_probs=55.0

Q ss_pred             CccccccCCCC-------CceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccccC
Q 040047           79 NFLCNACGEPG-------SAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQ  151 (240)
Q Consensus        79 ~~~Cd~C~~~~-------~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~  151 (240)
                      ...|..|....       .+....|..|+-.+|+.|+.+...+....    ....+.  -     ..-..|.+|++....
T Consensus         5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~----~~~~W~--C-----~~C~~C~vC~~~~~~   73 (112)
T 3v43_A            5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRV----KALRWQ--C-----IECKTCSSCRDQGKN   73 (112)
T ss_dssp             CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHH----HTSCCC--C-----TTTCCBTTTCCCCCT
T ss_pred             CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHh----hccccc--c-----ccCCccccccCcCCC
Confidence            45788886542       24678999999999999997632211000    000010  0     122368888876433


Q ss_pred             CcceeEEeCCCCeeeecccccCccc
Q 040047          152 KCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       152 ~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      . .....|..|+-.+|..|...+..
T Consensus        74 ~-~~ll~Cd~C~~~yH~~Cl~p~l~   97 (112)
T 3v43_A           74 A-DNMLFCDSCDRGFHMECCDPPLT   97 (112)
T ss_dssp             T-CCCEECTTTCCEECGGGCSSCCS
T ss_pred             c-cceEEcCCCCCeeecccCCCCCC
Confidence            3 46889999999999999876543

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=91.52  E-value=0.11  Score=48.20  Aligned_cols=44  Identities=23%  Similarity=0.549  Sum_probs=35.8

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhcccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNAS   54 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~p   54 (240)
                      +|.+......  .+..|+.|+..++|.   +|+|..|++.+|+.|....
T Consensus       209 ~h~f~~~~~~--~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~v  255 (463)
T 3cxl_A          209 IHNFKVHTFR--GPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMV  255 (463)
T ss_dssp             CCCEEEECCS--SCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTS
T ss_pred             CcceEEeecC--CCCcchhhhhhhhhHHhcCeeccccCccccccccccc
Confidence            3665555544  789999999999874   7999999999999998753

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=89.80  E-value=0.17  Score=37.99  Aligned_cols=74  Identities=24%  Similarity=0.411  Sum_probs=50.8

Q ss_pred             cccccccCC--------CCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCc------cccccCCCC
Q 040047           24 SCSACELII--------SGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNF------LCNACGEPG   89 (240)
Q Consensus        24 ~C~~C~~~~--------~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~------~Cd~C~~~~   89 (240)
                      .|+.|....        .+..-.|..|.-.+|..|...+..+.         ..++.     +.+      .|.+|+...
T Consensus         3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~---------~~~~~-----~~W~C~~C~~C~~C~~~~   68 (114)
T 2kwj_A            3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMT---------EAVKT-----YKWQCIECKSCILCGTSE   68 (114)
T ss_dssp             CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHH---------HHHHH-----TTCCCGGGCCCTTTTCCT
T ss_pred             cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhh---------hccCC-----CccCccccCccCcccccC
Confidence            588885432        12458999999999999998653221         01111     123      577777764


Q ss_pred             -CceeEEcCCCCcccccccccCC
Q 040047           90 -SAFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        90 -~g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                       .+....|..|+-.+|..|...|
T Consensus        69 ~~~~ll~Cd~C~~~yH~~Cl~pp   91 (114)
T 2kwj_A           69 NDDQLLFCDDCDRGYHMYCLNPP   91 (114)
T ss_dssp             TTTTEEECSSSCCEEETTTSSSC
T ss_pred             CCCceEEcCCCCccccccccCCC
Confidence             3678899999999999998743

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.04  E-value=0.27  Score=35.48  Aligned_cols=84  Identities=15%  Similarity=0.300  Sum_probs=52.4

Q ss_pred             CcccccccccC-CCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCC-CCceeEEcCC
Q 040047           21 NEYSCSACELI-ISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP-GSAFSFCCPL   98 (240)
Q Consensus        21 ~~~~C~~C~~~-~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~-~~g~~Y~C~~   98 (240)
                      +...|+.|.+. .....-.|..|+..|+..|....-.-..++ ..|.|+..... .......   |... .....|.|..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~-~~h~l~~~~~~-~~~~~~~---C~~H~~e~l~~fC~~   76 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF-TGHRLIEPIPD-SHIRGLM---CLEHEDEKVNMYCVT   76 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS-TTCCBSSCCCS-CCSSCCC---CSSCSSSCCCEEETT
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc-CCCeeeccccc-cCccCCc---CcCcCCCcceEECCC
Confidence            35789999864 345578999999999999988521111111 14555421110 0112233   4544 2456789999


Q ss_pred             CCccccccccc
Q 040047           99 CDFDLHVQCAF  109 (240)
Q Consensus        99 C~f~lH~~Ca~  109 (240)
                      |+.-++..|..
T Consensus        77 ~~~~iC~~C~~   87 (101)
T 2jun_A           77 DDQLICALCKL   87 (101)
T ss_dssp             TTEEECHHHHH
T ss_pred             CCCccchhcCC
Confidence            99999999975

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=87.62  E-value=0.33  Score=46.08  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=35.1

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|+..+.|   ..|+|..|++.+|..|...
T Consensus       518 ~H~F~~~~~~----~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~  563 (587)
T 3ky9_A          518 GHDFQMFSFE----ETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR  563 (587)
T ss_dssp             GCCEEEECCS----SCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred             CCceeEEeCC----CCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence            5788876542    47899999998644   4699999999999999974

>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1

Probab=86.21  E-value=0.41  Score=34.10  Aligned_cols=43  Identities=21%  Similarity=0.551  Sum_probs=31.9

Q ss_pred             CCCCeeeeecCCCcccccccccCCCC----ceEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISG----SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g----~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .|..+.-+..  ...+|..|++.+.+    ..|+|.=|...+|..|...
T Consensus        27 ~H~WveGNl~--~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~   73 (84)
T 1r79_A           27 PHQWLEGNLP--VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES   73 (84)
T ss_dssp             CCCEEESCCC--TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred             eeeEEccCCC--CCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHh
Confidence            3554443332  45799999998743    3699999999999999874

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=84.92  E-value=0.71  Score=41.48  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=33.6

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.+...+.    .....|+.|+..+.|   -.|+|..|++.+|..|...
T Consensus       346 ~h~f~~~~~----~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~  391 (406)
T 2vrw_B          346 GHDFQMFSF----EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR  391 (406)
T ss_dssp             GCCEEEECC----SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred             CCCCccccC----CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence            466665543    247899999998754   5699999999999999863

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=83.19  E-value=0.57  Score=34.84  Aligned_cols=81  Identities=22%  Similarity=0.414  Sum_probs=50.8

Q ss_pred             cccccccccC------C-CCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCC-CCCccccccCCCC--Cc
Q 040047           22 EYSCSACELI------I-SGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYS-AGNFLCNACGEPG--SA   91 (240)
Q Consensus        22 ~~~C~~C~~~------~-~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~-~~~~~Cd~C~~~~--~g   91 (240)
                      .-.|+.|...      . .+....|..|+-.+|.+|......+.-         .+....+. ..=..|.+|+...  .+
T Consensus         5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~---------~~~~~~W~C~~C~~C~vC~~~~~~~~   75 (112)
T 3v43_A            5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTV---------RVKALRWQCIECKTCSSCRDQGKNAD   75 (112)
T ss_dssp             CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHH---------HHHTSCCCCTTTCCBTTTCCCCCTTC
T ss_pred             CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHH---------HhhccccccccCCccccccCcCCCcc
Confidence            4578888543      1 234699999999999999985321110         00000000 0112577777654  25


Q ss_pred             eeEEcCCCCcccccccccCC
Q 040047           92 FSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        92 ~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ....|..|+-.+|..|...|
T Consensus        76 ~ll~Cd~C~~~yH~~Cl~p~   95 (112)
T 3v43_A           76 NMLFCDSCDRGFHMECCDPP   95 (112)
T ss_dssp             CCEECTTTCCEECGGGCSSC
T ss_pred             ceEEcCCCCCeeecccCCCC
Confidence            78899999999999997543

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=81.62  E-value=3  Score=30.92  Aligned_cols=74  Identities=18%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             CCccccccCCCCCceeEEcC--CCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccccCCcce
Q 040047           78 GNFLCNACGEPGSAFSFCCP--LCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFW  155 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g~~Y~C~--~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~  155 (240)
                      ....|.+|+.  .|....|.  .|...+|..|..+..+..  +    -  ++         -..-.|.+|++.      .
T Consensus        14 ~~~~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~--g----~--W~---------Cp~c~C~~C~k~------~   68 (107)
T 4gne_A           14 HEDYCFQCGD--GGELVMCDKKDCPKAYHLLCLNLTQPPY--G----K--WE---------CPWHQCDECSSA------A   68 (107)
T ss_dssp             SCSSCTTTCC--CSEEEECCSTTCCCEECTGGGTCSSCCS--S----C--CC---------CGGGBCTTTCSB------C
T ss_pred             CCCCCCcCCC--CCcEeEECCCCCCcccccccCcCCcCCC--C----C--EE---------CCCCCCCcCCCC------C
Confidence            4678999994  36788899  899999999987432100  0    0  00         012345566664      3


Q ss_pred             eEEeCCCCeeeecccccCccc
Q 040047          156 SYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       156 ~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      .|+|..|...+|..|......
T Consensus        69 ~~~C~~Cp~sfC~~c~~g~l~   89 (107)
T 4gne_A           69 VSFCEFCPHSFCKDHEKGALV   89 (107)
T ss_dssp             CEECSSSSCEECTTTCTTSCE
T ss_pred             CcCcCCCCcchhhhccCCcce
Confidence            599999999999999876654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=81.37  E-value=0.93  Score=41.81  Aligned_cols=42  Identities=21%  Similarity=0.511  Sum_probs=33.3

Q ss_pred             cceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           65 HHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      |.|...+..    ....|+.|+..+.|   ..|+|..|++.+|..|...
T Consensus       210 h~f~~~~~~----~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~  254 (463)
T 3cxl_A          210 HNFKVHTFR----GPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKM  254 (463)
T ss_dssp             CCEEEECCS----SCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTT
T ss_pred             cceEEeecC----CCCcchhhhhhhhhHHhcCeeccccCcccccccccc
Confidence            666655432    47899999998754   3799999999999999864

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=80.46  E-value=2.1  Score=28.34  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=30.1

Q ss_pred             cceeccccccccc-CCcceeEEeCCCCeeeecccccCccc
Q 040047          138 SSYVCDICHKQLD-QKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       138 ~~~~C~vC~~~~~-~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      ....|.+|+..-+ .. .....|..|+-.+|..|...+..
T Consensus         5 ~~~~C~vC~~~~~~~~-~~ll~Cd~C~~~~H~~C~~p~l~   43 (66)
T 2yt5_A            5 SSGVCTICQEEYSEAP-NEMVICDKCGQGYHQLCHTPHID   43 (66)
T ss_dssp             CCCCBSSSCCCCCBTT-BCEEECSSSCCEEETTTSSSCCC
T ss_pred             CCCCCCCCCCCCCCCC-CCEEECCCCChHHHhhhCCCccc
Confidence            5679999998632 22 56899999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	1e-16
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	3e-07
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	5e-07

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.3 bits (172), Expect = 1e-16
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 39  CWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPL 98
             E +    E   +  + ++H  H  H L L          + C+ C E G+ +S+ C  
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR-----VQVYTCDKCEEEGTIWSYHCDE 66

Query: 99  CDFDLHVQCAFLPEILIH 116
           CDFDLH +CA   +    
Sbjct: 67  CDFDLHAKCALNEDTKES 84

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 13/79 (16%)

Query: 96  CPLCDFDLHVQCAFLPEILIHDSH-FHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCF 154
               +          P+ + H  H  H L L+             Y CD C ++      
Sbjct: 12  LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTR---------VQVYTCDKCEEEGTI--- 59

Query: 155 WSYNCFACNFHAHVSCTRN 173
           WSY+C  C+F  H  C  N
Sbjct: 60  WSYHCDECDFDLHAKCALN 78

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4  KHFSHP-HNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQH 59
          KH  H  H L +        Y+C  CE   +  +Y C EC F LH +C       + 
Sbjct: 31 KHVLHEEHELELT---RVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDTKES 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.79
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.59
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	98.11
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	97.89
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	97.79
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	97.74
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	97.73
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	97.69
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	97.49
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	97.37
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	97.22
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	97.22
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	96.8
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	96.65
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	96.51
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	96.22
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	96.06
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	94.87
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	88.72
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	84.22
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	82.53

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=8e-21  Score=138.49  Aligned_cols=79  Identities=29%  Similarity=0.538  Sum_probs=72.4

Q ss_pred             CCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccCC
Q 040047           32 ISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        32 ~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ..|..|+|.+|++.+|+.|+++|++|+|++||+|+|+|...+     .+.|++|++.+.+++|+|..|+|+||..||.+|
T Consensus         5 ~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~-----~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P   79 (89)
T d1v5na_           5 SSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ-----VYTCDKCEEEGTIWSYHCDECDFDLHAKCALNE   79 (89)
T ss_dssp             CCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCS-----SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCS
T ss_pred             CCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCC-----CCEeCCCCCCcCCcEeEeccCCCEecHHHcCCC
Confidence            356789999999999999999999999999999999997653     578999999999999999999999999999999


Q ss_pred             ceee
Q 040047          112 EILI  115 (240)
Q Consensus       112 ~~i~  115 (240)
                      .+++
T Consensus        80 ~~~~   83 (89)
T d1v5na_          80 DTKE   83 (89)
T ss_dssp             SCSS
T ss_pred             cccC
Confidence            8754

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=9.8e-17  Score=116.55  Aligned_cols=82  Identities=26%  Similarity=0.483  Sum_probs=72.2

Q ss_pred             CceeEEcCCCCcccccccccCCceeeeCCCc-eeeEEeecCCccCCCCccceecccccccccCCcceeEEeCCCCeeeec
Q 040047           90 SAFSFCCPLCDFDLHVQCAFLPEILIHDSHF-HSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHV  168 (240)
Q Consensus        90 ~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~-H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~  168 (240)
                      .|..|+|.+|++.+|..|+.+|..|+|+.|+ |+|+|...         ..++|++|++.+.   +|+|+|..|+|++|+
T Consensus         6 ~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~---------~~~~C~~C~~~~~---g~~Y~C~~C~f~LH~   73 (89)
T d1v5na_           6 SGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRV---------QVYTCDKCEEEGT---IWSYHCDECDFDLHA   73 (89)
T ss_dssp             CCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECC---------SSCCCTTTSCCCC---SCEEECTTTCCCCCH
T ss_pred             CchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecC---------CCCEeCCCCCCcC---CcEeEeccCCCEecH
Confidence            4677899999999999999999999999997 99999764         3478999999864   899999999999999


Q ss_pred             ccccCccccCCCCCC
Q 040047          169 SCTRNRNNSDSAKPE  183 (240)
Q Consensus       169 ~C~~~~~~~~~~~p~  183 (240)
                      .||..+...++++|.
T Consensus        74 ~CA~~P~~~~~~p~~   88 (89)
T d1v5na_          74 KCALNEDTKESGPSS   88 (89)
T ss_dssp             HHHHCSSCSSCCCCC
T ss_pred             HHcCCCcccCCCCCC
Confidence            999999886666554

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=5.9e-07  Score=63.52  Aligned_cols=46  Identities=28%  Similarity=0.652  Sum_probs=36.9

Q ss_pred             Cccccccccc-CCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEeec
Q 040047           21 NEYSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVPT   72 (240)
Q Consensus        21 ~~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~   72 (240)
                      ..+.||+|+. +|.|.+|+|..| ||||+..|...      ..|+.|++.+...
T Consensus        23 ~~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~------~~h~~H~f~~~~~   70 (85)
T d2dipa1          23 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS------YCHLSHTFTFREK   70 (85)
T ss_dssp             CCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT------TSGGGSCEEECCS
T ss_pred             CCeECCCCCCCCcCcceEEcCCCCCccchHHHHCc------CCCCCCCcceecC
Confidence            4578999965 689999999999 99999999763      3456788876544

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.9e-06  Score=56.33  Aligned_cols=48  Identities=21%  Similarity=0.597  Sum_probs=37.5

Q ss_pred             CcccccccccC-CCCceEeeCCC----CCcchhhhccccccccCCCC-CCcceEEe
Q 040047           21 NEYSCSACELI-ISGSAYGCWEC----KFFLHEQCGNASRAMQHTSH-PMHHLTLV   70 (240)
Q Consensus        21 ~~~~C~~C~~~-~~g~~Y~C~~C----~f~lH~~Ca~~p~~i~h~~H-p~H~L~l~   70 (240)
                      ..+.||+|+.. |.|.+|+|..|    ||||+..|.....+.  ..| +.|+|..+
T Consensus        13 ~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~--~~H~~~H~~~~I   66 (69)
T d2fc7a1          13 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHET--DIHKEDHQLEPI   66 (69)
T ss_dssp             SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCC--SSCCSSSCEEEE
T ss_pred             CCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccC--CCCCCCCCEEEe
Confidence            45899999774 79999999999    899999998866432  234 36888765

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=3.3e-06  Score=54.02  Aligned_cols=42  Identities=26%  Similarity=0.607  Sum_probs=33.3

Q ss_pred             cccccccccCCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEee
Q 040047           22 EYSCSACELIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVP   71 (240)
Q Consensus        22 ~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~   71 (240)
                      .+.||+|...+ |.+|+|..| ||||+..|....      .| .|+|+...
T Consensus         6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~~------~H-~H~m~k~~   48 (52)
T d1tota1           6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK------SH-THKMVKWG   48 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH------CC-CSSEEEEC
T ss_pred             EEECcCCCCcC-CCceECCCCCCcccHHHHhcCC------Cc-CCCeEEec
Confidence            46799998876 679999999 899999998642      35 37877653

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=9.5e-06  Score=54.85  Aligned_cols=47  Identities=28%  Similarity=0.554  Sum_probs=37.2

Q ss_pred             CccccccCCC-CCceeEEcCCC----CcccccccccCCceeeeCCCc--eeeEEee
Q 040047           79 NFLCNACGEP-GSAFSFCCPLC----DFDLHVQCAFLPEILIHDSHF--HSLNLSY  127 (240)
Q Consensus        79 ~~~Cd~C~~~-~~g~~Y~C~~C----~f~lH~~Ca~lP~~i~~~~H~--H~L~l~~  127 (240)
                      .+.||+|++. +.|.+|+|..|    ||||+..|.....  ....|.  |++..++
T Consensus        14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~--~~~~H~~~H~~~~I~   67 (69)
T d2fc7a1          14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH--ETDIHKEDHQLEPIY   67 (69)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC--CCSSCCSSSCEEEEC
T ss_pred             CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcc--cCCCCCCCCCEEEee
Confidence            5799999997 57999999999    8999999986553  234454  8887655

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.3e-05  Score=52.86  Aligned_cols=46  Identities=22%  Similarity=0.597  Sum_probs=39.2

Q ss_pred             CCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            6 FSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +..+|.+......  .+..|+.|.+.|+|.   +|.|..|++..|+.|.+.
T Consensus         1 ~~k~H~F~~~~~~--~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~   49 (62)
T d1xa6a3           1 YEKTHNFKVHTFR--GPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKH   49 (62)
T ss_dssp             CCCCCCCCEECCS--SCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTT
T ss_pred             CCCCCEEEEeeCC--CCCCCcccCccccccccCeEEcCCCCchhhHHHHhh
Confidence            3567888887765  678999999999874   799999999999999875

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.69  E-value=1.2e-05  Score=53.71  Aligned_cols=46  Identities=20%  Similarity=0.498  Sum_probs=38.9

Q ss_pred             CCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            6 FSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      |..+|.+......  .+..|+.|...|+|.   +|+|..|++..|+.|+..
T Consensus         5 p~~~H~F~~~~~~--~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~   53 (66)
T d1tbna_           5 PRNKHKFRLHSYS--SPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRS   53 (66)
T ss_dssp             CCCSCCEEECCSS--SCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTT
T ss_pred             CCCCCceEEEeCC--CCcCCcCCCCcccCcccCccccCcccCeEChHHhcc
Confidence            4567888877654  678999999999874   699999999999999985

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3e-05  Score=49.29  Aligned_cols=43  Identities=21%  Similarity=0.568  Sum_probs=36.9

Q ss_pred             CCCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047            8 HPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         8 H~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ..|.+......  .+..|+.|++.|+ .+|+|..|++.+|++|.+.
T Consensus         2 ~~H~F~~~~f~--~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~   44 (52)
T d1faqa_           2 TTHNFARKTFL--KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCCEEECCS--SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             CceEEEEeeCC--CCcCCccCCCccc-cCCCcCCCCChhhhhhhcc
Confidence            35777777765  7899999999997 4799999999999999985

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=2.9e-05  Score=48.85  Aligned_cols=42  Identities=21%  Similarity=0.649  Sum_probs=34.3

Q ss_pred             CCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047           10 HNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        10 H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      |.+......  .+..|+.|.+.|+|.   +|+|..|++..|+.|.+.
T Consensus         1 H~F~~~~~~--~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T d1ptqa_           1 HRFKVYNYM--SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             CCEEEECCS--SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEecCC--CCcCCcccCCcccCcccCcEECCCCCCeeChhHccc
Confidence            445555543  678999999999873   799999999999999884

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=1.3e-05  Score=51.22  Aligned_cols=40  Identities=30%  Similarity=0.709  Sum_probs=32.3

Q ss_pred             CccccccCCCCCceeEEcCCC-CcccccccccCCceeeeCCCceeeEE
Q 040047           79 NFLCNACGEPGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLNL  125 (240)
Q Consensus        79 ~~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~l  125 (240)
                      .+.||.|.+.+ +.+|+|.+| ||||+..|...      ..|+|+|.-
T Consensus         6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~------~~H~H~m~k   46 (52)
T d1tota1           6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNT------KSHTHKMVK   46 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHH------HCCCSSEEE
T ss_pred             EEECcCCCCcC-CCceECCCCCCcccHHHHhcC------CCcCCCeEE
Confidence            46899999876 679999999 99999999753      356787753

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=6.5e-05  Score=52.63  Aligned_cols=43  Identities=21%  Similarity=0.511  Sum_probs=33.4

Q ss_pred             CccccccCCC-CCceeEEcCCC-CcccccccccCCceeeeCCCc-eeeEEee
Q 040047           79 NFLCNACGEP-GSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHF-HSLNLSY  127 (240)
Q Consensus        79 ~~~Cd~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~-H~L~l~~  127 (240)
                      ...|++|++. +.|.+|+|..| ||||+..|....      .|. |++.+..
T Consensus        24 ~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~~------~h~~H~f~~~~   69 (85)
T d2dipa1          24 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY------CHLSHTFTFRE   69 (85)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT------SGGGSCEEECC
T ss_pred             CeECCCCCCCCcCcceEEcCCCCCccchHHHHCcC------CCCCCCcceec
Confidence            5689999875 68999999999 999999997532      233 6665543

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=8.5e-05  Score=46.63  Aligned_cols=41  Identities=17%  Similarity=0.492  Sum_probs=32.0

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +|.+......  .+. |+.|.+.|+ .+|+|.+|++..|+.|++.
T Consensus         4 ~H~F~~~~~~--~~t-C~~C~~~l~-qg~~C~~C~~~~Hk~C~~~   44 (49)
T d1kbea_           4 THRFSTKSWL--SQV-CNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCCEEEECCS--SCC-CSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             ccEEeecCcC--CCC-chhhchhhh-CcCCcCCCCChHhHhhccc
Confidence            4666543332  344 999999997 5799999999999999985

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=96.80  E-value=0.00078  Score=44.44  Aligned_cols=49  Identities=24%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             CceeeEEeecCCccCCCCccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          119 HFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       119 H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      .+|.+......        ...+|++|++.+.+-...+|+|.+|++.+|.+|+....
T Consensus         7 ~~H~F~~~~~~--------~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~   55 (66)
T d1tbna_           7 NKHKFRLHSYS--------SPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVP   55 (66)
T ss_dssp             CSCCEEECCSS--------SCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTSC
T ss_pred             CCCceEEEeCC--------CCcCCcCCCCcccCcccCccccCcccCeEChHHhcccc
Confidence            34766554322        34689999998753113589999999999999987654

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00049  Score=43.38  Aligned_cols=42  Identities=19%  Similarity=0.451  Sum_probs=34.0

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|++.+. ..|+|..|++.+|.+|+..
T Consensus         3 ~H~F~~~~f~----~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~   44 (52)
T d1faqa_           3 THNFARKTFL----KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCS----SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             ceEEEEeeCC----CCcCCccCCCccc-cCCCcCCCCChhhhhhhcc
Confidence            4777776543    4789999999874 4699999999999999964

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0004  Score=48.25  Aligned_cols=44  Identities=20%  Similarity=0.520  Sum_probs=35.2

Q ss_pred             CCCCCeeeeecCCCcccccccccCCCCc----eEeeCCCCCcchhhhccc
Q 040047            8 HPHNLRIYQVQHGNEYSCSACELIISGS----AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         8 H~H~L~l~~~~~~~~~~C~~C~~~~~g~----~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .+|.+...+..  ....|+.|.+.|+|.    .|+|..|++.+|+.|.+.
T Consensus        26 ~~H~w~~~n~~--~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~   73 (84)
T d1r79a_          26 MPHQWLEGNLP--VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES   73 (84)
T ss_dssp             BCCCEEESCCC--TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred             CCceEEeCCCC--CCCCCcccCcccCCccccCcEecCcCCchhhhhhcCC
Confidence            35766554433  788999999998763    599999999999999984

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00089  Score=41.66  Aligned_cols=42  Identities=19%  Similarity=0.466  Sum_probs=32.8

Q ss_pred             cceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           65 HHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      |.|+..+..    ....|+.|++.+.|   ..|+|.+|++..|..|...
T Consensus         1 H~F~~~~~~----~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T d1ptqa_           1 HRFKVYNYM----SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             CCEEEECCS----SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEecCC----CCcCCcccCCcccCcccCcEECCCCCCeeChhHccc
Confidence            456555432    46799999998754   4699999999999999863

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0018  Score=42.02  Aligned_cols=37  Identities=16%  Similarity=0.434  Sum_probs=29.3

Q ss_pred             ceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          139 SYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       139 ~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ..+|++|++.+.+-....|+|..|++..|.+|.....
T Consensus        15 pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~   51 (62)
T d1xa6a3          15 PHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVP   51 (62)
T ss_dssp             CCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTSC
T ss_pred             CCCCcccCccccccccCeEEcCCCCchhhHHHHhhCC
Confidence            4689999998753214689999999999999976543

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0031  Score=39.11  Aligned_cols=29  Identities=28%  Similarity=0.703  Sum_probs=25.6

Q ss_pred             cccccCCCCCceeEEcCCCCcccccccccC
Q 040047           81 LCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        81 ~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|+.|++.+. ..|+|.+|++.+|..|+..
T Consensus        16 tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~   44 (49)
T d1kbea_          16 VCNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             Cchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence            4999999885 5699999999999999864

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0056  Score=42.16  Aligned_cols=41  Identities=17%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             cceEEeeccCCCCCCccccccCCCCCc----eeEEcCCCCccccccccc
Q 040047           65 HHLTLVPTTTYSAGNFLCNACGEPGSA----FSFCCPLCDFDLHVQCAF  109 (240)
Q Consensus        65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g----~~Y~C~~C~f~lH~~Ca~  109 (240)
                      |.|+....+    ...+|+.|++.+.+    ..|+|..|++.+|..|..
T Consensus        28 H~w~~~n~~----~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~   72 (84)
T d1r79a_          28 HQWLEGNLP----VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE   72 (84)
T ss_dssp             CCEEESCCC----TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred             ceEEeCCCC----CCCCCcccCcccCCccccCcEecCcCCchhhhhhcC
Confidence            677654432    36799999998743    359999999999999985

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.72  E-value=0.25  Score=31.31  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             ccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      .....|.+|++..+.. ...-.|..|+.-+|..|+..+.
T Consensus         4 ~~~~~C~~C~~~~~~~-~~~I~Cd~C~~w~H~~C~~~~~   41 (64)
T d1we9a_           4 GSSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITP   41 (64)
T ss_dssp             SSCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCT
T ss_pred             CCCCcCcCcCCCCCCC-CCEEEcCCCCccCCcccCCcCh
Confidence            3567999999976544 3345999999999999997544

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.22  E-value=0.2  Score=30.32  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      +|.+|++..+.  ...-.|..|+-.+|..|+..+..
T Consensus         2 ~C~vC~~~~~~--~~~i~Cd~C~~~~H~~C~~p~~~   35 (51)
T d1f62a_           2 RCKVCRKKGED--DKLILCDECNKAFHLFCLRPALY   35 (51)
T ss_dssp             CCTTTCCSSCC--SCCEECTTTCCEECHHHHCTTCC
T ss_pred             CCcCcCCCCCC--CCEEEcCCCCCCCCCCCCCCCCC
Confidence            68999987653  34678999999999999976643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.53  E-value=0.29  Score=29.48  Aligned_cols=31  Identities=23%  Similarity=0.563  Sum_probs=25.9

Q ss_pred             cccccCCCCC-ceeEEcCCCCcccccccccCC
Q 040047           81 LCNACGEPGS-AFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        81 ~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      .|.+|++... +....|..|+-.+|..|...|
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~   33 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPA   33 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTT
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCC
Confidence            6889988764 566789999999999998765