Citrus Sinensis ID: 040048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
Protein Sequence
MAENSPDKKSGCGLLNAVFGRRWPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSKRRRNSSADETQFLEDAAAPNVQEPQAQPKPSSKPPPGHHPKPQQNNVKKPEDAAAVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHccccccHHHHcccHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHccccccccHHHEEcccccccccccccccccccccccccccEEEccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHccccccEEEcccccEEcccccccccccccccccccccccccccHHccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHcc
Coil and Loop (DISEMBL)
maenspdkksgcgllnavfgrrwprrttstgslpmvngssngggnnqlvkvpstpnskrrrnssadetqfledaaapnvqepqaqpkpsskpppghhpkpqqnnvkkpedaaavnnnvnsnnnkvtanqgyvnqgrrvpreaigisGELESMIADhqktrgssnlvrasssnmmlfgnlgnirqgggggnvnpynhvnessgvrgnnntnknnnrypnsvmgnvvkkqndhpqnhynynppkpassssaeptSLCRAlstrmdpetlkimgnedykagNFAEALALYDAaisidpnkasyrsNKTAALIALGRLLEAVFECREairiephyhRAHHRLANLYLRLGEVEKAIYHfkhagpeadqVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAiaggadsaPQIYALQAEALLKLHKHQEadetlkngpnfdvdettrffgpignANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAygdglgldpynsvllCNRAACRSKLGQFEKAIEDCNAAlnvrpgyskaRLRRADCFAKIEKWEASMQDYEILkkeapddeEVDQALQE
Flexible Loop (DISEMBL)
maenspdkksgcgllnavfgrrwprrttstgslpmvngssngggnnqlvkvpstpnskrrrnSSADETQFLEDAAAPNVQEPQAQPKPSSKPPPGHHPKPQQNNVKKPEDAAAVNnnvnsnnnkvtanqgyvnqgrrvPREAIGISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQNDHPQNHYNYnppkpassssaEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISidpnkasyrSNKTAALIALGRLLEAVFECREAIriephyhraHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHlnkctdakrtrDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKaakqdsnnkevNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAalnvrpgyskarlRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE
Low Complexity Region (SEG)
MAENSPDKKSGCGLLNAVFGRRWPRRTTSTGSLPMVngssngggnnQLVKVPSTPNSKRRRNSSADETQFLEDAAAPNVQEpqaqpkpsskpppghhpkpqqNNVKKPEDaaavnnnvnsnnnkvtanQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASSSNMMLFgnlgnirqgggggnvnpynHVNESSGVRGnnntnknnnrypnSVMGNVVKKQNDHPQNHYNYNppkpassssaeptsLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEaaaaYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE
Disordered region (IsUnstruct)
***********CGLLNAVFGRRW****************************************************************************************************************************************************************************************************************************************************KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK***********PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ******************************ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI*****************
Disordered Region (DISOPRED)
****************AV****************************************************************************************************************************IGISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLGNIRQG******NPYNHVNESSGVR**************SVMGNVVKKQNDHPQNHYNYN*****************ALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ*
Disordered Region (DISEMBL)
*********SGCGLLNAVFGRRWPRRTTSTGSLPMVNGSSNGGGNNQLVKV***************ETQFLEDAAAPN*****************************PEDAAAVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIAD********NLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQNDHPQNHYNYNP**************CRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP***********
Disordered Region (DISPRO)
***********CGLLNAVFGRR****************************************************************************************************************GRRVPREAIGISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGV*GNNNTNKNNNRYPNSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD**LQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAENSPDKKSGCGLLNAVFGRRWPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSKRRRNSSADETQFLEDAAAPNVQEPQAQPKPSSKPPPGHHPKPQQNNVKKPEDAAAVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	608	2.2.26 [Sep-21-2011]
Q84JR9	682	TPR repeat-containing thi	no	no	0.567	0.505	0.507	2e-97
Q9SIN1	691	Inactive TPR repeat-conta	no	no	0.567	0.499	0.498	1e-94
Q9MAH1	699	TPR repeat-containing thi	no	no	0.565	0.492	0.468	2e-86
F4IXE4	730	TPR repeat-containing thi	no	no	0.565	0.471	0.442	2e-82
Q9QYI3	494	DnaJ homolog subfamily C	yes	no	0.513	0.631	0.301	8e-29
Q99615	494	DnaJ homolog subfamily C	yes	no	0.513	0.631	0.292	2e-28
Q5R8D8	494	DnaJ homolog subfamily C	yes	no	0.513	0.631	0.289	3e-27
Q54IP0	539	DnaJ homolog subfamily C	yes	no	0.544	0.614	0.243	4e-21
Q9HGM9	476	DnaJ homolog subfamily C	yes	no	0.486	0.621	0.249	8e-16
Q9D706	660	RNA polymerase II-associa	no	no	0.174	0.160	0.377	7e-12

>sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1

 Score =  357 bits (915), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/349 (50%), Positives = 242/349 (69%), Gaps = 4/349 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D E +K  GN  Y+ GN+AEALALYD AIS+ P   +YRSN+ AAL A GRL EAV EC 
Sbjct: 210 DSEEVKKAGNVMYRKGNYAEALALYDRAISLSPENPAYRSNRAAALAASGRLEEAVKECL 269

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           EA+R +P Y RAH RLA+LYLRLGE E A  H   +G   DQ D+ + ++L+ HL  CT+
Sbjct: 270 EAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSGQCPDQADLQRLQTLEKHLRLCTE 329

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET 442
           A++  DW T+I E  AAIA GADS+PQ+ A +AEA L+LH+ +++D  + + P  D   T
Sbjct: 330 ARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLDHHHT 389

Query: 443 T---RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD-SNNKEVNMVMRKAKGV 498
               + FG + +A +L V+AQV++A GRFE+A+  +++A   D SN+ EV  V+   K V
Sbjct: 390 QPPEKLFGIVCDAYVLCVQAQVDMALGRFENAIVKVERAMTIDHSNSPEVVSVLNNVKNV 449

Query: 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
           A AR+ GN LF   ++SEA+ AYGDGL LD +NSVL CNRAAC  KLG +EK+++DCN A
Sbjct: 450 AKARTRGNELFSSGRYSEASVAYGDGLKLDAFNSVLYCNRAACWFKLGMWEKSVDDCNQA 509

Query: 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
           L ++P Y+KA LRRA  + K+ +WE +++DYE+L+KE P D EV ++LQ
Sbjct: 510 LRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRKELPGDSEVAESLQ 558

Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2

 Score =  347 bits (891), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 174/349 (49%), Positives = 234/349 (67%), Gaps = 4/349 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +PE LK MGN+ Y+ G+F+EAL+LYD AI I P  A+YRSN+ AAL AL RL EAV EC 
Sbjct: 219 NPEELKRMGNDMYRRGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECL 278

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           EA+RI+P Y RAH RLA+LYLRLGE E A  H   +G   DQ D+ + ++L+ HL +C +
Sbjct: 279 EAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRRCWE 338

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFD---- 438
           A++  DW T I+ET AAIA GADS+PQ+ A +AEA L+L + +++D  +   P  D    
Sbjct: 339 ARKIGDWKTAIKETDAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYH 398

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
                + FG +  A +L ++AQV++A GRFE+A+   ++AA  D  N EV  V+   K V
Sbjct: 399 SQPQVKLFGMVVEAYVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMV 458

Query: 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
             AR+ GN LF   +FSEA  AYGDGL  D  NSVL CNRAAC  KLG +EK++EDCN A
Sbjct: 459 VRARTRGNELFSSGRFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHA 518

Query: 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
           L  +P Y KA LRRA  + K+ +WE +++DYE L++E P D EV ++L+
Sbjct: 519 LKSQPSYIKALLRRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLE 567

Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1

 Score =  320 bits (820), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/348 (46%), Positives = 228/348 (65%), Gaps = 4/348 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D E +K +GNE Y+ G F EAL LYD AI++ P  A+YRSN+ AALI L R+ EAV EC 
Sbjct: 226 DSEEVKRVGNEMYRKGLFNEALKLYDRAIALSPTNAAYRSNRAAALIGLSRIGEAVKECE 285

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           +A+R +P+Y RAHHRLA L +RLG+V  A  H    G  +D +++ K ++++ HL KC D
Sbjct: 286 DAVRSDPNYGRAHHRLALLLIRLGQVNSARKHLCFLGRPSDPMELQKLEAVEKHLIKCVD 345

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN---FDV 439
           A+R  DW T++ E  AAI  GAD +PQ++  + EA LKLH+  +A   L   P    F V
Sbjct: 346 ARRVTDWKTVLIEADAAIVSGADFSPQLFMCKVEAFLKLHRLDDAQSKLLEVPKVEPFPV 405

Query: 440 D-ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
               TRF G    A +  V+AQ+ +A GRFE+A+ A +KA++ D    EV M+      V
Sbjct: 406 SCSQTRFSGMACEAYIYFVKAQIEMALGRFENAVMAAEKASQIDPRCNEVAMLHNTVTLV 465

Query: 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
           A AR+ GN L+K  +++EA++AY +GL LDP N++L CNRAAC  KLG +E++IEDCN A
Sbjct: 466 ARARARGNDLYKSERYTEASSAYAEGLRLDPCNAILYCNRAACWFKLGMWERSIEDCNQA 525

Query: 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
           L  +P Y+K  LRRA   +K+E+W A++ DYE L +E P D+EV ++L
Sbjct: 526 LRYQPSYTKPLLRRAASNSKMERWGAAVSDYEALIRELPHDKEVAESL 573

Involved in responses to osmotic stress and abscisic acid (ABA). May act as a positive regulator of ABA signaling during germination and seedling development under stress.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IXE4|TTL2_ARATH TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis thaliana GN=TTL2 PE=2 SV=2

 Score =  307 bits (786), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/348 (44%), Positives = 223/348 (64%), Gaps = 4/348 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +PE +K  GNE ++ G FAEAL LYD AI + P+ A+Y SN+ AAL +LG++ EAV EC 
Sbjct: 257 NPEEVKRFGNEMFRKGCFAEALKLYDRAIELSPSNATYHSNRAAALSSLGQIGEAVNECE 316

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
            AI+++P++ RAHHRLA+L LRLG V+ A  H        D   +   + +  HLNKCT 
Sbjct: 317 IAIKLDPNFARAHHRLASLLLRLGYVDNAGIHLYSVEEPLDPTVVKMLQQVDKHLNKCTY 376

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFD---- 438
           A+R  +W+ ++ E  AAIA GADS+PQ+   +AEALLKL +  +A   L+  P  +    
Sbjct: 377 ARRRGEWSIVLTEVSAAIASGADSSPQLAMCKAEALLKLLRLDDAQRVLECVPKVEPFPA 436

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
               TRFF  I  A    V++Q+ LA GRFE+A+   +KA+K D  N EV ++ +  + +
Sbjct: 437 SFSHTRFFDMIAEAYTSFVKSQMELALGRFENAVVTAEKASKIDPQNNEVEILYKNVRLI 496

Query: 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
             AR  GN L++  +++EA +AY +GL  DP N+ LLC RA C  K+G +E +IEDCN A
Sbjct: 497 TRARDRGNDLYELERYTEARSAYAEGLKYDPSNATLLCYRADCFFKVGMWESSIEDCNHA 556

Query: 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
           L + P Y+K RL+RA  + K+E+W  ++ DYEIL+KE P D+E+ ++L
Sbjct: 557 LLILPSYTKPRLQRAALYTKLERWAEAVSDYEILRKELPYDKEIAESL 604

Plays a role in the transmission of male gametophyte.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2

 Score =  129 bits (323), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 163/342 (47%), Gaps = 30/342 (8%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           + E+ K  GN  Y   ++ EA   Y  AI + PN ASY  N+ A L+ LGR  EA+ + +
Sbjct: 27  EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQ 86

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK------HAGPEADQVDIAKAKSLQAH 376
           +++R++  + R H R    +L LG    A   F+      H   +A Q +   A ++  +
Sbjct: 87  QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQ-EFKNANAVMEY 145

Query: 377 LNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN 436
                     RD+  ++     A+   A +  +   L+AE L  L ++ EA         
Sbjct: 146 EKIAEVDFEKRDFRKVVFCMDRALE-FAPACHRFKILKAECLAMLGRYPEA--------Q 196

Query: 437 FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL-AAIQ---KAAKQDSNNKEVNMVM 492
           F   +  R      NA+ L VR      C  +ED +  A+Q   +A +   ++++  +  
Sbjct: 197 FVASDILRM--DSTNADALYVRG----LCLYYEDCIEKAVQFFVQALRMAPDHEKACVAC 250

Query: 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP----YNSVLLCNRAACRSKLGQF 548
           R AK + A + +GN  FK+  +  A   Y + LG+DP     N+ L CNR    SKL Q 
Sbjct: 251 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQL 310

Query: 549 EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           E AIEDC  A+ +   Y KA LRRA C+   E++E +++DYE
Sbjct: 311 EDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYE 352

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm.

Mus musculus (taxid: 10090)

>sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 30/342 (8%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           + ET K  GN  Y   ++ EA   Y  AI + P  ASY  N+ A L+ LGR  EA+ + +
Sbjct: 27  EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK------HAGPEADQVDIAKAKSLQAH 376
           +++R++  + R H R    +L LG    A   F+      H   +A Q +   A ++  +
Sbjct: 87  QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQ-EFKNANAVMEY 145

Query: 377 LNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN 436
                     RD+  ++     A+   A +  +   L+AE L  L ++ EA     +   
Sbjct: 146 EKIAETDFEKRDFRKVVFCMDRALE-FAPACHRFKILKAECLAMLGRYPEAQSVASDILR 204

Query: 437 FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL-AAIQ---KAAKQDSNNKEVNMVM 492
            D            NA+ L VR      C  +ED +  A+Q   +A +   ++++  +  
Sbjct: 205 MDS----------TNADALYVRG----LCLYYEDCIEKAVQFFVQALRMAPDHEKACIAC 250

Query: 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP----YNSVLLCNRAACRSKLGQF 548
           R AK + A + +GN  FK+  +  A   Y + LG+DP     N+ L CNR    SKL + 
Sbjct: 251 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKL 310

Query: 549 EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           + AIEDC  A+ +   Y KA LRRA C+   E++E +++DYE
Sbjct: 311 DDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYE 352

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm.

Homo sapiens (taxid: 9606)

>sp|Q5R8D8|DNJC7_PONAB DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 160/342 (46%), Gaps = 30/342 (8%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           + ET K  GN  Y   ++ EA   Y  AI + P  ASY  N+ A L+ LGR  EA+ + +
Sbjct: 27  EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK------HAGPEADQVDIAKAKSLQAH 376
           +++R++  + R   R    +L LG    A   F+      H   +A Q +   A ++  +
Sbjct: 87  QSVRLDDSFVRGRLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQ-EFKNANAVMEY 145

Query: 377 LNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN 436
                     RD+  ++     A+   A +  +   L+AE L  L ++ EA     +   
Sbjct: 146 EKIAETDFEKRDFRKVVFCMDRALE-FAPACHRFKILKAECLAMLGRYPEAQSVASDILR 204

Query: 437 FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL-AAIQ---KAAKQDSNNKEVNMVM 492
            D            NA+ L VR      C  +ED +  A+Q   +A +   ++++  +  
Sbjct: 205 MDS----------TNADALYVRG----LCLYYEDCIEKAVQFFVQALRMAPDHEKACIAC 250

Query: 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP----YNSVLLCNRAACRSKLGQF 548
           R AK + A + +GN  FK+  +  A   Y + LG+DP     N+ L CNR    SKL + 
Sbjct: 251 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKL 310

Query: 549 EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           + AIEDC  A+ +   Y KA LRRA C+   E++E +++DYE
Sbjct: 311 DDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYE 352

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm.

Pongo abelii (taxid: 9601)

>sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1

 Score =  103 bits (257), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 167/365 (45%), Gaps = 34/365 (9%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI-DPNKASYRSNKTAALIAL---GRLLEA 317
           MD E  K  GN  +K   + +A+  Y  AI + +   A+Y  N+ AA +A+     L ++
Sbjct: 1   MDHEECKTQGNNYFKQSQYMDAIRCYTQAIELSNGTIAAYYGNRAAAYLAICTKSSLQDS 60

Query: 318 VFECREAIRIEPHYHRAHHRLANLYLRLGEVEKA---IYHFKHAGP-------EADQVDI 367
           + +  +AI +E  + + + R +  Y+ L + ++A   I       P       E +Q+D 
Sbjct: 61  IKDSLKAIELERSFIKGYTRASKAYIHLAQYDQAASIIVRGLVFDPRNNELLQEKNQID- 119

Query: 368 AKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA 427
               S+Q  ++  T  K   + ++ + +    ++    +  Q+  L+A  L++L ++ +A
Sbjct: 120 ----SIQRTISSLTKEKALSNPSSSLNQIENVLSQSKYNT-QLQVLKARVLIELKQYPQA 174

Query: 428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487
              +          TT       N   L VR         F  AL   Q +   D +  E
Sbjct: 175 SNLM----------TTLLQEDSRNPEYLYVRGLSLYYQNNFPLALQHFQNSLTYDPDYSE 224

Query: 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP----YNSVLLCNRAACRS 543
             + +++ + + + +  GN  F+   +  A  ++ + L +DP     NS L  NRAA   
Sbjct: 225 SRVALKRLRSIESKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALV 284

Query: 544 KLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603
            L +  +AI DC +A+ + P Y KA +RRA C  K E +E +++DYE  +   P++ E+ 
Sbjct: 285 HLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQ 344

Query: 604 QALQE 608
           + ++E
Sbjct: 345 RNIKE 349

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1

 Score = 85.9 bits (211), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 147/353 (41%), Gaps = 57/353 (16%)

Query: 245 SSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISI--DPNKASYRS 302
           + S  EP  L          E  K +GN  YK   +AEA+  Y  AI +  D   A Y S
Sbjct: 13  TESQQEPAELA---------EKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYS 63

Query: 303 NKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK--HAGP 360
           N+ A  + +G    A+ + +++ RI+P   +   R+   Y  L  + +A  + K   AG 
Sbjct: 64  NRAATYMQIGEFELALCDAKQSDRIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGL 123

Query: 361 EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420
             + +D      LQ  ++  T    +  W  L                Q+Y  Q +    
Sbjct: 124 ALNALD-----RLQRRIDSTTQPPMS--WMYL--------------KAQVYIFQND---- 158

Query: 421 LHKHQE-ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAA 479
           + + Q+ A + L+  P               N   LV+R +V    G    A+   Q+A 
Sbjct: 159 MDRAQKIAHDVLRLNPK--------------NVEALVLRGKVMYYSGENAKAITHFQEAL 204

Query: 480 KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLL 535
           K D +      + ++ + +   ++ GN LF+Q  + +A   Y + L +DP N    + L 
Sbjct: 205 KLDPDCTTAKTLFKQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLY 264

Query: 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD 588
            NRA    +L + E+A+ D + AL +   Y K    RA     +EKWE +++D
Sbjct: 265 MNRATVLLRLKRPEEALSDSDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRD 317

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 57/106 (53%)

Query: 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           +  GN  FKQ K+ EA   Y  G+  DPYN VL  NRA+   +L +F  A  DCN A+ +
Sbjct: 138 KEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIAL 197

Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
              Y+KA  RR      ++K E + +DYE + +  PD+ E    L+
Sbjct: 198 SRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELR 243

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	608
255584852	622	Tetratricopeptide repeat protein, putati	0.947	0.926	0.643	0.0
296090612	701	unnamed protein product [Vitis vinifera]	0.930	0.807	0.625	0.0
359496360	710	PREDICTED: TPR repeat-containing thiored	0.950	0.814	0.625	0.0
224081160	573	predicted protein [Populus trichocarpa]	0.896	0.951	0.631	0.0
449458375	600	PREDICTED: inactive TPR repeat-containin	0.939	0.951	0.614	0.0
357463393	577	DnaJ homolog subfamily C member-like pro	0.924	0.974	0.558	0.0
356538154	582	PREDICTED: TPR repeat-containing thiored	0.922	0.963	0.562	0.0
15238361	593	tetratricopeptide repeat (TPR)-containin	0.935	0.959	0.568	0.0
297797535	588	tetratricopeptide repeat-containing prot	0.930	0.962	0.567	0.0
217426808	590	AT5G10090-like protein [Arabidopsis aren	0.930	0.959	0.560	1e-174

>gi|255584852|ref|XP_002533142.1| Tetratricopeptide repeat protein, putative [Ricinus communis] gi|223527053|gb|EEF29238.1| Tetratricopeptide repeat protein, putative [Ricinus communis]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/631 (64%), Positives = 473/631 (74%), Gaps = 55/631 (8%)

Query: 1   MAENSPDKKSGCGLLNAVFGRR--WPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSK 58
           M + SPDKKSGCGLLNAVFGRR  WPRRTTS  SLP V+G       N  ++ PSTP   
Sbjct: 1   MGDISPDKKSGCGLLNAVFGRRSFWPRRTTSASSLPTVSG-------NTFIRTPSTP--- 50

Query: 59  RRRNSSADETQFLEDAAAPNVQEPQAQPKPSSKPPPGHHPK------------------- 99
           +RR S +DE  FLE +   +     A PKP +K P   HPK                   
Sbjct: 51  KRRRSGSDEAAFLEISTGTS----DAPPKPITKAP--DHPKIPPILQQQHHQQNAHAQQQ 104

Query: 100 PQQNNVKKPEDAAAVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKT 159
            QQN  +KP D A     +  + N+   N  YV+QGR++P+EA+GISGELE MIADHQK 
Sbjct: 105 QQQNCGRKPVDEA--KKILPDHGNQ---NYAYVHQGRKLPKEAVGISGELEIMIADHQKN 159

Query: 160 RGSSNLVRASSSNMMLFGNLGNIRQ--GGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYP 217
            GS+ LVRASSSN+MLFGNLGN+RQ   GGGGN++ YN ++         N   N  +YP
Sbjct: 160 NGSNTLVRASSSNVMLFGNLGNLRQPGAGGGGNMSSYNVLDHLPKTAREENPVPNG-KYP 218

Query: 218 NSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKA 277
           NSVMGNV+KKQ++           KP         SLCRALSTRMDPE LKIMGNEDYK 
Sbjct: 219 NSVMGNVIKKQHEE----------KPGVEQQPAGGSLCRALSTRMDPEQLKIMGNEDYKN 268

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337
           GNFAEALALYDAAISIDPNKASYRSNK+AAL ALGRLLEAVFECREAIRI+PHYHRAHHR
Sbjct: 269 GNFAEALALYDAAISIDPNKASYRSNKSAALTALGRLLEAVFECREAIRIDPHYHRAHHR 328

Query: 338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETR 397
           LANL +RLG+ EKA+YH+KH+GPEAD VDIAKAK LQ HLNKCT+A+R RDWNTLI+ET+
Sbjct: 329 LANLCVRLGDGEKAMYHYKHSGPEADHVDIAKAKGLQVHLNKCTEARRLRDWNTLIKETK 388

Query: 398 AAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457
           AAI+ GADSAPQIYALQAEAL+++ +HQEADE LK GPNFDVD+ T++FGPI NANLL+V
Sbjct: 389 AAISSGADSAPQIYALQAEALMQIRRHQEADEVLKKGPNFDVDDCTKYFGPIANANLLMV 448

Query: 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA 517
           RAQV++A GRF+DALA  Q+A + DSNNKE   VMRKA+ VAAARSNGN LFK AKF EA
Sbjct: 449 RAQVDMAVGRFDDALAKAQRATRLDSNNKEAGTVMRKARAVAAARSNGNQLFKAAKFYEA 508

Query: 518 AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577
           +  YG+GL  DPYNSVLLCNRAACR KLGQ+EKA+EDCNAAL++RPGY KARLRRADC+ 
Sbjct: 509 SNVYGEGLEHDPYNSVLLCNRAACRCKLGQYEKAVEDCNAALSLRPGYCKARLRRADCYT 568

Query: 578 KIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
           K+ K EAS+QD+EIL+KEAPDDEEV + L E
Sbjct: 569 KLGKLEASIQDFEILQKEAPDDEEVSKGLLE 599

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090612|emb|CBI40996.3| unnamed protein product [Vitis vinifera]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/616 (62%), Positives = 459/616 (74%), Gaps = 50/616 (8%)

Query: 1   MAENSPDKKSGCGLLNAVFGRR--WPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSK 58
           M + SP+K SGCGLLNAVFGRR  W RR TSTGSLP +N       +  + +V  TP+SK
Sbjct: 4   MVDTSPNKSSGCGLLNAVFGRRTFWLRRATSTGSLPSMN-------SINISRVSGTPSSK 56

Query: 59  RRRNSSADETQFL-----EDAAAPNVQEPQAQPKPS-SKPPPGHHPKPQQNNVKKPEDAA 112
           RRR SS+DET FL      +AA+    +P  +P PS +K PP ++      N  +  D A
Sbjct: 57  RRRGSSSDETSFLNQSNSSEAASGLGDKPIIRPSPSHTKTPPIYN-----QNQGRRSDEA 111

Query: 113 AVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASSSN 172
            +  ++ S   K++  + YVNQGRRVPREAIGISGELE+MIADHQ ++G+S+LVRASSSN
Sbjct: 112 IMQPSLRSGAMKMSQREAYVNQGRRVPREAIGISGELEAMIADHQSSKGNSSLVRASSSN 171

Query: 173 MMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQNDHP 232
           +MLF NLGN+RQ G G   +              NNT+  N +Y +S MGNVVKK N   
Sbjct: 172 VMLFSNLGNLRQPGTGNFTS--------------NNTSMPNGKYSSSQMGNVVKKPNGEK 217

Query: 233 QNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAIS 292
           +                 P+SLCRALSTRMDPETLKIMGNEDYK G FAEALALYDAAIS
Sbjct: 218 E----------------PPSSLCRALSTRMDPETLKIMGNEDYKNGRFAEALALYDAAIS 261

Query: 293 IDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
           IDPNKASYRSNK+AAL ALGRLLEAVFECREA+RIEP+YHRAH RL NLYLRLGE EKAI
Sbjct: 262 IDPNKASYRSNKSAALTALGRLLEAVFECREALRIEPYYHRAHQRLGNLYLRLGEAEKAI 321

Query: 353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412
           YHFKHAGPE+D  D+AKA SLQAHL+KCT+A+R RDWNTL++E    I+ GADSAPQIY 
Sbjct: 322 YHFKHAGPESDPEDMAKAHSLQAHLSKCTEARRLRDWNTLVKEAGYTISAGADSAPQIYT 381

Query: 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL 472
           LQAEALLKLH+HQEAD  L   P F VD+ T+FFGP GNANLL++RAQV+LA GR +DA 
Sbjct: 382 LQAEALLKLHRHQEADAVLAASPYFSVDDCTKFFGPYGNANLLMIRAQVDLAAGRLDDAF 441

Query: 473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532
            A QKAA+ DSNNKEV +V+R+ +GV +AR+ GN LFK ++FSEA  AYG+GL  DP+NS
Sbjct: 442 EAAQKAARLDSNNKEVGIVVRRTRGVISARAMGNDLFKASRFSEACIAYGEGLDHDPFNS 501

Query: 533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
           VLLCNRA CRSKLGQFEKA+EDC AAL+VRP YSKARLRRADC AK+ + EAS+QDYE+L
Sbjct: 502 VLLCNRATCRSKLGQFEKAVEDCTAALSVRPSYSKARLRRADCNAKLGRCEASIQDYEVL 561

Query: 593 KKEAPDDEEVDQALQE 608
            +E P+DEEV +A+ E
Sbjct: 562 MRETPEDEEVGKAMFE 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496360|ref|XP_003635218.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/616 (62%), Positives = 461/616 (74%), Gaps = 38/616 (6%)

Query: 1   MAENSPDKKSGCGLLNAVFGRR--WPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSK 58
           M + SP+K SGCGLLNAVFGRR  W RR TSTGSLP +N       +  + +V  TP+SK
Sbjct: 1   MVDTSPNKSSGCGLLNAVFGRRTFWLRRATSTGSLPSMN-------SINISRVSGTPSSK 53

Query: 59  RRRNSSADETQFL-----EDAAAPNVQEPQAQPKPS-SKPPPGHHPKPQQNNVKKPEDAA 112
           RRR SS+DET FL      +AA+    +P  +P PS +K PP ++      N  +  D A
Sbjct: 54  RRRGSSSDETSFLNQSNSSEAASGLGDKPIIRPSPSHTKTPPIYN-----QNQGRRSDEA 108

Query: 113 AVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASSSN 172
            +  ++ S   K++  + YVNQGRRVPREAIGISGELE+MIADHQ ++G+S+LVRASSSN
Sbjct: 109 IMQPSLRSGAMKMSQREAYVNQGRRVPREAIGISGELEAMIADHQSSKGNSSLVRASSSN 168

Query: 173 MMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQNDHP 232
           +MLF NLGN+RQ G G   +  N+V +         T+  N +Y +S MGNVVKK N   
Sbjct: 169 VMLFSNLGNLRQPGTGNFTS--NNVQDYLPKAAREETSMPNGKYSSSQMGNVVKKPNGEK 226

Query: 233 QNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAIS 292
           +                 P+SLCRALSTRMDPETLKIMGNEDYK G FAEALALYDAAIS
Sbjct: 227 E----------------PPSSLCRALSTRMDPETLKIMGNEDYKNGRFAEALALYDAAIS 270

Query: 293 IDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
           IDPNKASYRSNK+AAL ALGRLLEAVFECREA+RIEP+YHRAH RL NLYLRLGE EKAI
Sbjct: 271 IDPNKASYRSNKSAALTALGRLLEAVFECREALRIEPYYHRAHQRLGNLYLRLGEAEKAI 330

Query: 353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412
           YHFKHAGPE+D  D+AKA SLQAHL+KCT+A+R RDWNTL++E    I+ GADSAPQIY 
Sbjct: 331 YHFKHAGPESDPEDMAKAHSLQAHLSKCTEARRLRDWNTLVKEAGYTISAGADSAPQIYT 390

Query: 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL 472
           LQAEALLKLH+HQEAD  L   P F VD+ T+FFGP GNANLL++RAQV+LA GR +DA 
Sbjct: 391 LQAEALLKLHRHQEADAVLAASPYFSVDDCTKFFGPYGNANLLMIRAQVDLAAGRLDDAF 450

Query: 473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532
            A QKAA+ DSNNKEV +V+R+ +GV +AR+ GN LFK ++FSEA  AYG+GL  DP+NS
Sbjct: 451 EAAQKAARLDSNNKEVGIVVRRTRGVISARAMGNDLFKASRFSEACIAYGEGLDHDPFNS 510

Query: 533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
           VLLCNRA CRSKLGQFEKA+EDC AAL+VRP YSKARLRRADC AK+ + EAS+QDYE+L
Sbjct: 511 VLLCNRATCRSKLGQFEKAVEDCTAALSVRPSYSKARLRRADCNAKLGRCEASIQDYEVL 570

Query: 593 KKEAPDDEEVDQALQE 608
            +E P+DEEV +A+ E
Sbjct: 571 MRETPEDEEVGKAMFE 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081160|ref|XP_002306314.1| predicted protein [Populus trichocarpa] gi|222855763|gb|EEE93310.1| predicted protein [Populus trichocarpa]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/618 (63%), Positives = 458/618 (74%), Gaps = 73/618 (11%)

Query: 1   MAENSPDKK-SGCGLLNAVFGRR--WPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNS 57
           M + SP+KK +GCGL + VFGRR  WPRR+TSTGS+P VN ++                 
Sbjct: 4   MGDISPEKKPAGCGLFSVVFGRRSFWPRRSTSTGSIPTVNAAN----------------- 46

Query: 58  KRRRNSSADETQFLEDAAAPNVQEPQAQPKPSSKPPPGHHPK--PQQNN---VKKPEDAA 112
                             +   +  + Q K  +K P   HPK  P QN     K PE+A 
Sbjct: 47  -------------FTRTPSTPRRRRKGQQKSITKAP--MHPKIPPAQNQNYGKKLPEEAT 91

Query: 113 AVNNNVN-SNNNKVTANQ-GYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASS 170
            +++N   +N N+  +NQ  +VNQGRRVP+EA+GISGELESMI DHQK++GSS LVRASS
Sbjct: 92  KISSNQGYANQNQGYSNQNAFVNQGRRVPKEAVGISGELESMITDHQKSKGSSTLVRASS 151

Query: 171 SNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQND 230
           SN+MLFGNLGN+RQGG    V+P                   N +YPNSVMGNVVKKQN+
Sbjct: 152 SNVMLFGNLGNLRQGGEV--VSP-------------------NGKYPNSVMGNVVKKQNE 190

Query: 231 HPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAA 290
                      KP   +     SLCRALSTRMDPE LK+MGNEDYK GNFAEALALY+AA
Sbjct: 191 E----------KPNVGAQPASGSLCRALSTRMDPEQLKMMGNEDYKNGNFAEALALYNAA 240

Query: 291 ISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350
           ISIDPNKASYRSN++AAL ALG++LEAVFECREAIRIEPHYHRAHHRLANLYLRLGE EK
Sbjct: 241 ISIDPNKASYRSNRSAALTALGKILEAVFECREAIRIEPHYHRAHHRLANLYLRLGEAEK 300

Query: 351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI 410
           AIYH+KHAGPEAD VDI+KAK+LQAHLNKCT+A++ RDWNTLI+ET A I+ GADSAPQI
Sbjct: 301 AIYHYKHAGPEADHVDISKAKALQAHLNKCTEARKHRDWNTLIKETAATISAGADSAPQI 360

Query: 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED 470
           +ALQAEAL+KLH+HQEA+E     PNFDVD  T+FFGP+GNANLLVVRAQV++A GRF+D
Sbjct: 361 FALQAEALIKLHRHQEAEEASMKCPNFDVDACTKFFGPLGNANLLVVRAQVHMALGRFDD 420

Query: 471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530
           ALAA+Q+A + DSNNKE NMV+RKAK VAAARS GN LFK A+F EA   Y +GL  DPY
Sbjct: 421 ALAAVQRATRLDSNNKEANMVLRKAKAVAAARSKGNQLFKAARFYEACNTYSEGLEHDPY 480

Query: 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           NSVLLCNRAACRSKLGQ+EKA+EDCNAAL VRPGYSKARLRRADC AK+EKWE S++DYE
Sbjct: 481 NSVLLCNRAACRSKLGQYEKAVEDCNAALTVRPGYSKARLRRADCNAKLEKWEVSVKDYE 540

Query: 591 ILKKEAPDDEEVDQALQE 608
           +L+ EAP D+EV + L E
Sbjct: 541 MLQNEAPGDDEVSRVLME 558

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458375|ref|XP_004146923.1| PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cucumis sativus] gi|449522746|ref|XP_004168387.1| PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cucumis sativus]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/623 (61%), Positives = 454/623 (72%), Gaps = 52/623 (8%)

Query: 1   MAENSPDKKSGCGLLNAVFGRR--WPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSK 58
           MA++  DKKS CGLLNAVFGRR  WPRRT S  SL  +N +     NN  VK  S+ NSK
Sbjct: 1   MADDMSDKKSSCGLLNAVFGRRGFWPRRTASNASLSTMNSN-----NNDFVKTASSQNSK 55

Query: 59  RRRNSSADETQFLEDAAAPNVQEPQAQPKPSSKPPPGHHPKPQQNNVKKPEDAAAVN--- 115
           RRR  S DE  F+  +A              SKP  G + + QQ  V   ++        
Sbjct: 56  RRRGGS-DEGAFIHVSAV------------ESKPKVGPNQQTQQRVVYSNQNQNQNQQRG 102

Query: 116 --NNVNSNNNKV---------TANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSS- 163
             +N+ +   K+         +A  GYV+QGRRVP+EAIGISGELE MIADHQK++G++ 
Sbjct: 103 AASNIQNVGCKIAAPPSRVAASAGNGYVDQGRRVPKEAIGISGELELMIADHQKSKGTNG 162

Query: 164 NLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGN 223
           +LVRASSSN+MLFGNLGN+RQGG GG    YN V+          T   N RY N V+GN
Sbjct: 163 SLVRASSSNVMLFGNLGNLRQGGNGGGNT-YNVVDYMPKT-AREETQVPNGRYQNGVVGN 220

Query: 224 VVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEA 283
           V K Q            PK    S  +  SLCR LSTRMDPE LKIMGNEDYK G FAEA
Sbjct: 221 VGKGQ------------PK---QSVEQTGSLCRVLSTRMDPEQLKIMGNEDYKNGRFAEA 265

Query: 284 LALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343
           LALY+AAI+IDPNKASYRSNK+AAL ALG L++AVFECREAIRIEPHYHRAHHRLA LYL
Sbjct: 266 LALYEAAIAIDPNKASYRSNKSAALTALGMLVDAVFECREAIRIEPHYHRAHHRLATLYL 325

Query: 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG 403
           RLG+ EKA+YH+K +GPEADQ D+AKAK++QAHLNKCT+A+R RDWNTLI+ET  AI  G
Sbjct: 326 RLGDTEKAMYHYKQSGPEADQEDLAKAKAVQAHLNKCTEARRLRDWNTLIKETGFAITSG 385

Query: 404 ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL 463
           ADSAPQI+ALQAEA LKLHKHQ+ADE +  GP FDVD  T+F GP+GNANLL++RAQV+L
Sbjct: 386 ADSAPQIFALQAEAFLKLHKHQDADEAISRGPTFDVDSCTKFLGPVGNANLLLIRAQVDL 445

Query: 464 ACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD 523
             GRF+DAL A Q+AA+ DSNN++ N+VMR+A+ + AARSNGN LFK ++FSEA  AYG+
Sbjct: 446 TAGRFDDALEAAQRAARLDSNNRDTNVVMRRARAITAARSNGNELFKASRFSEACLAYGE 505

Query: 524 GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWE 583
           GL  DPYNSVLLCNRAACRSKL QFEKA+EDC AALN RP YSKARLRRADC AK+ KWE
Sbjct: 506 GLEHDPYNSVLLCNRAACRSKLEQFEKAVEDCTAALNARPSYSKARLRRADCNAKLGKWE 565

Query: 584 ASMQDYEILKKEAPDDEEVDQAL 606
           +S++DYEIL +E PDD+EV +AL
Sbjct: 566 SSIKDYEILLEETPDDKEVREAL 588

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463393|ref|XP_003601978.1| DnaJ homolog subfamily C member-like protein [Medicago truncatula] gi|355491026|gb|AES72229.1| DnaJ homolog subfamily C member-like protein [Medicago truncatula]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/612 (55%), Positives = 424/612 (69%), Gaps = 50/612 (8%)

Query: 1   MAENSPDKKSGCGLLNAVFGRRWPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSKRR 60
           M + SP++K+GCGL+  VFGRR  ++T+S GS P                +P+  N  +R
Sbjct: 1   MGDISPERKAGCGLMTTVFGRR-SKKTSSVGSAP----------------IPNNVNDPKR 43

Query: 61  RNSSADETQFLEDAAAPNVQEPQAQPKPSSKPPPGHHPKPQQNNVKKPEDAAAVNNNVNS 120
           R   + E   + DA + NV         S       +  PQ+  +  P   + V N+   
Sbjct: 44  RRGGSKEVVSV-DAPSQNVPNTSTTRSVSKTSSCSSNNNPQKTTM--PRGPSKVLNS--- 97

Query: 121 NNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLG 180
                +  +GYVNQGRRVP+EA+GISGELESMI DHQK++GSS L+RASS N+ML+GNLG
Sbjct: 98  -----STTEGYVNQGRRVPKEAVGISGELESMINDHQKSKGSSTLIRASSGNVMLYGNLG 152

Query: 181 NIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQNDHPQNHYNYNP 240
           N+RQG      N Y+            N   N N+Y  +   N    +  H  N  +   
Sbjct: 153 NLRQGDKN---NSYS------------NAMDNYNQYFENANSNA---RGGHTNNVTSVRK 194

Query: 241 PKPASSSSAEPTS----LCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN 296
              +S+   E  S    LCRA+STRMDPE LKIMGNEDYK G FAEAL+LYDAAI+IDP 
Sbjct: 195 ETKSSTKLKEEKSGGGSLCRAISTRMDPEQLKIMGNEDYKNGRFAEALSLYDAAIAIDPK 254

Query: 297 KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK 356
            ASYRSN++AAL ALGRLLEAVFECREAI+I+PHYHRAHHRL NL+ RLGE +KA+YH+K
Sbjct: 255 TASYRSNRSAALTALGRLLEAVFECREAIQIDPHYHRAHHRLGNLHFRLGETDKALYHYK 314

Query: 357 HAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAE 416
            AGPEAD  ++AK K LQAHL+KCT+A+R  DWNTLI ET   ++ GADSAPQI+ALQAE
Sbjct: 315 QAGPEADPDEVAKVKILQAHLSKCTEARRLGDWNTLITETSKILSSGADSAPQIFALQAE 374

Query: 417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ 476
           AL+KL +HQ+AD  +   PNFDVD+ T+FFGPIGN+NLLV RAQV++A GRF+DAL A Q
Sbjct: 375 ALIKLRRHQDADNVMSKCPNFDVDDCTKFFGPIGNSNLLVTRAQVDIAAGRFDDALEAAQ 434

Query: 477 KAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLC 536
           KAA+ D NNK  N V+RKA+ V AAR  GN LFK +KFSEA  AYG+GL  DPYNS+LLC
Sbjct: 435 KAARLDPNNKVANKVLRKARAVTAARGRGNELFKASKFSEACVAYGEGLEHDPYNSILLC 494

Query: 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596
           NRAACRSKL Q EKA+EDC AALN+RP Y+KARLRRADC  K+E+WEAS+ DYEIL +E 
Sbjct: 495 NRAACRSKLSQLEKAVEDCTAALNLRPSYTKARLRRADCNDKMERWEASIGDYEILLRET 554

Query: 597 PDDEEVDQALQE 608
           P+DEE+++AL E
Sbjct: 555 PEDEELNRALLE 566

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538154|ref|XP_003537569.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/619 (56%), Positives = 422/619 (68%), Gaps = 58/619 (9%)

Query: 1   MAENSPDKKSGCGLLNAVFGRR--WPRRTTSTGSLPMVNGSSNGGGNNQLVKVPSTPNSK 58
           M  NSP++K GCGL+ AVF R   W R++ S GS PM +            K  +T +SK
Sbjct: 1   MGGNSPERKPGCGLMTAVFRRNNPWSRKSVSAGSSPMAH---------NFEKPSNTQDSK 51

Query: 59  RRRNSSADETQFLEDA---AAPNVQEPQAQPKPSSKPPPGHHP----KPQQNNVKKPEDA 111
           RR   S D     E +      +V    ++  P+ + P   H     KPQQN        
Sbjct: 52  RRHGGSNDFVPIKESSHNNNNNDVTNYSSRSVPNPQRPTTPHVVSQRKPQQNR------- 104

Query: 112 AAVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRASSS 171
              +       +  +  QGY+NQG+RVP+EA+GISGELESMI +H K++GSS L      
Sbjct: 105 ---DETTMGKGSSPSPTQGYINQGKRVPKEAVGISGELESMINEHLKSKGSSTL------ 155

Query: 172 NMMLFGNLGNIRQGG-GGGNVNPYNHVNE-SSGVRGNNNTNKNNNRYPNSVMGNVVKKQN 229
                GNLGN+RQGG G  + N Y+ ++  +S V    +TN+   R              
Sbjct: 156 -----GNLGNLRQGGVGPKHHNAYSEMDYYASNVASGGHTNQITGR-------------- 196

Query: 230 DHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDA 289
           ++ +  +     KP+   S    SLCRA+STRMDPE LKIMGNEDYK G FAEALALYDA
Sbjct: 197 EYDKTSFYGKEAKPSKEQSG---SLCRAVSTRMDPEQLKIMGNEDYKNGRFAEALALYDA 253

Query: 290 AISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE 349
           AI+IDPNKASYRSN++AAL ALGRLLEAVFECREAIRIE HY RAHHRL NL LRLGE +
Sbjct: 254 AIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIESHYQRAHHRLGNLNLRLGETD 313

Query: 350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQ 409
           KA+YH+K AGP+AD  +I KAK+LQ +LNKCT+A+R  DW TLI  T  AI+ GADSAPQ
Sbjct: 314 KALYHYKQAGPDADPDEIVKAKTLQVYLNKCTEARRFGDWITLITATNNAISSGADSAPQ 373

Query: 410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE 469
           IYALQAEALLKLH+HQ+AD+ +   P FDVD+ TRFFGPIGNANLLV RAQV+L  GRFE
Sbjct: 374 IYALQAEALLKLHRHQDADKVMSRCPKFDVDQCTRFFGPIGNANLLVTRAQVDLVAGRFE 433

Query: 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP 529
           +AL A QKA + DSN++E N VMRKA+ + +AR+ GN LFK + F EA  AYG+GL  DP
Sbjct: 434 EALEAAQKATRLDSNSREANKVMRKARALTSARAKGNELFKASNFHEACIAYGEGLDHDP 493

Query: 530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY 589
           YNSVLLCNRAACRSKLGQFEKAI+DCN ALN+RP Y KARLRRADC AK+E+WEAS+QDY
Sbjct: 494 YNSVLLCNRAACRSKLGQFEKAIDDCNTALNLRPSYIKARLRRADCNAKLERWEASIQDY 553

Query: 590 EILKKEAPDDEEVDQALQE 608
           EIL KE P+DEEV +AL E
Sbjct: 554 EILLKETPEDEEVKRALME 572

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238361|ref|NP_201320.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|10178177|dbj|BAB11651.1| unnamed protein product [Arabidopsis thaliana] gi|51536492|gb|AAU05484.1| At5g65160 [Arabidopsis thaliana] gi|53850501|gb|AAU95427.1| At5g65160 [Arabidopsis thaliana] gi|332010627|gb|AED98010.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/619 (56%), Positives = 430/619 (69%), Gaps = 50/619 (8%)

Query: 1   MAENSP----DKKSGCGLLNAVFGRR--WPRRTTST--GSLPMVNGSSNGGGNNQLVKVP 52
           M EN+     +++SGCGLL+ +FGRR  W +++T+   GS    + ++    N Q  K P
Sbjct: 1   MEENTAVAAAERRSGCGLLSVMFGRRGLWSKKSTAVDNGSQKSTSTAATATSNIQFTKSP 60

Query: 53  STPNSKRRRNS--SADETQFLEDAAAPNVQEPQAQP-KPSSKPPPGHHPKPQQNNVKKPE 109
            T   K R +   SA+  Q  +     N  +    P KPSS   P +H      N ++  
Sbjct: 61  GTELKKPRDDQKVSAEPIQNNKIQNNQNHNQRSVVPSKPSSNQYPNNHQLGTYENHQR-- 118

Query: 110 DAAAVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRAS 169
                 ++ N+N+N V   +G   Q R+VPREAIG+SGELESMI DHQK +G++ LVRAS
Sbjct: 119 ------SSYNNNSNSVDPYRGGGGQ-RKVPREAIGLSGELESMITDHQKAKGTNGLVRAS 171

Query: 170 SSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQN 229
           SSN+ML+GNLGN+ Q G      P      ++GV   NN      R           K  
Sbjct: 172 SSNIMLYGNLGNLNQTG------PV-----TAGVNYGNNNGYGVKRTTMGAATATTTKSQ 220

Query: 230 DHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDA 289
           D                   +  SLCRA+STRMDPETLKIMGNEDYK GNFAEALALYDA
Sbjct: 221 D-------------------QSGSLCRAISTRMDPETLKIMGNEDYKNGNFAEALALYDA 261

Query: 290 AISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE 349
           AI+IDPNKA+YRSNK+AAL ALGR+L+AVFECREAIRIEPHYHRAHHRL NLYLRLGEVE
Sbjct: 262 AIAIDPNKAAYRSNKSAALTALGRILDAVFECREAIRIEPHYHRAHHRLGNLYLRLGEVE 321

Query: 350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQ 409
           K+IYHFKH+GPEAD+ DIAKAK++Q HLNKCT+AKR RDWN LI ET   I+ GAD+APQ
Sbjct: 322 KSIYHFKHSGPEADREDIAKAKTVQTHLNKCTEAKRLRDWNGLITETTNTISSGADAAPQ 381

Query: 410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE 469
           +YALQAEALLK H+HQEAD+ L   P FD+D +TR++GP+G A  LVVRAQV+LA GRF+
Sbjct: 382 VYALQAEALLKTHRHQEADDALSRCPVFDIDASTRYYGPVGYAGFLVVRAQVHLASGRFD 441

Query: 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP 529
           +A+ AIQ+A K D NN+EV M+ R+A+ V  AR  GN LFK  +F EA AAYG+GL  DP
Sbjct: 442 EAVEAIQRAGKLDGNNREVIMISRRAQAVTEARFKGNELFKSGRFQEACAAYGEGLDHDP 501

Query: 530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY 589
            NSVLLCNRAACRSKLGQF+K+IEDC AAL+VRPGY KARLRRADC AKIEKWE ++ DY
Sbjct: 502 RNSVLLCNRAACRSKLGQFDKSIEDCTAALSVRPGYGKARLRRADCNAKIEKWELAVGDY 561

Query: 590 EILKKEAPDDEEVDQALQE 608
           EILKKE+P+DE+V + L E
Sbjct: 562 EILKKESPEDEQVIRGLSE 580

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797535|ref|XP_002866652.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312487|gb|EFH42911.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/620 (56%), Positives = 427/620 (68%), Gaps = 54/620 (8%)

Query: 1   MAENSP----DKKSGCGLLNAVFGRR--WPRRTTST--GSLPMVNGSSNGGGNNQLVKVP 52
           M EN+     +++SGCGLL+ +FGRR  W +++T+   GS    + ++    N Q  K P
Sbjct: 1   MEENTAVAAAERRSGCGLLSVMFGRRGLWSKKSTAADNGSQKSTSTATTATSNIQFTKSP 60

Query: 53  STPNSKRR--RNSSADETQFLEDAAAPNVQEPQAQP-KPSSKPPPGHHPKPQQNNVKKPE 109
            T   K R  +  SA+  Q  +     N  +    P KPSS   P +H           +
Sbjct: 61  GTELKKPRDDQKVSAEPIQNNKIQNQQNHNQRSVVPSKPSSNQYPNNH-----------Q 109

Query: 110 DAAAVNNNVNSNNNKVTANQGYVNQGRRVPREAIGISGELESMIADHQKTRGSSNLVRAS 169
             +  N+  +S NN   +   Y    R+VPREAIG+SGELESMI DHQK +G+S LVRAS
Sbjct: 110 LGSYENHQRSSYNNNSNSVDPYRGGQRKVPREAIGLSGELESMITDHQKAKGTSGLVRAS 169

Query: 170 SSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGV-RGNNNTNKNNNRYPNSVMGNVVKKQ 228
           SSN+ML+GNLGN+ Q G      P      ++GV  GNNN             G   K Q
Sbjct: 170 SSNVMLYGNLGNLNQTG------PV-----TAGVNYGNNNGYGVKRATMGDATGTTTKSQ 218

Query: 229 NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYD 288
           +                    +  SLCRA+STRMDPETLKIMGNEDYK+GNFAEALALYD
Sbjct: 219 D--------------------QSGSLCRAISTRMDPETLKIMGNEDYKSGNFAEALALYD 258

Query: 289 AAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEV 348
           AAI+IDPNKA+YRSNK+AAL ALGR+LEAVFECREAIRIEPHYHRAHHRL NLYLRLGEV
Sbjct: 259 AAIAIDPNKAAYRSNKSAALTALGRILEAVFECREAIRIEPHYHRAHHRLGNLYLRLGEV 318

Query: 349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP 408
           EK+IYHFKH+GPEAD+ DIAKAK++Q HLNKCT+AKR RDWN LI ET   I+ GAD+AP
Sbjct: 319 EKSIYHFKHSGPEADREDIAKAKTVQTHLNKCTEAKRLRDWNGLITETTNTISSGADAAP 378

Query: 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF 468
           Q+YALQAEALLK H+HQEAD+ L   P FD D +TR++GP+G A  LVVRAQV+LA GRF
Sbjct: 379 QVYALQAEALLKTHRHQEADDALSRCPVFDGDTSTRYYGPVGYAGFLVVRAQVHLASGRF 438

Query: 469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD 528
           ++A+ AIQ+A K D NN+EV MV R+A+ V  AR  GN LFK  +F EA  AYG+GL  D
Sbjct: 439 DEAVEAIQRAGKLDGNNREVMMVSRRAQAVTEARFKGNELFKAGRFQEACIAYGEGLDHD 498

Query: 529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD 588
           P NSVLLCNRAAC S+LGQF+K+IEDC AAL+VRPGY KARLRRADC AKIEKWE ++ D
Sbjct: 499 PRNSVLLCNRAACWSRLGQFDKSIEDCTAALSVRPGYGKARLRRADCNAKIEKWELAVGD 558

Query: 589 YEILKKEAPDDEEVDQALQE 608
           YEILKKE+P+DE+V + L E
Sbjct: 559 YEILKKESPEDEQVTRGLSE 578

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217426808|gb|ACK44516.1| AT5G10090-like protein [Arabidopsis arenosa]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 347/619 (56%), Positives = 424/619 (68%), Gaps = 53/619 (8%)

Query: 1   MAENSPDKKSGCGLLNAVFGRR--WPRRT----TSTGSLPMVNGSSNGGGNNQLVKVPST 54
           MA+N  +KKS C  L  VF RR  W ++     +S  S    + +S    N Q  K P T
Sbjct: 1   MADNPVEKKSRCRFLGFVFNRRGLWSKKCPADNSSHKSTMSSSNASTATANIQFTKSPCT 60

Query: 55  PNSKRRRNSSADETQFLEDAAAPNVQEPQAQ-PKPSSKPPPGHHPKPQQNNVKKPEDAAA 113
             + R+           E+   P   E Q Q  +P SKP    +P               
Sbjct: 61  EFNPRK---------LQENKVLPEPVEIQNQVQRPISKPSSNQYPN-------------- 97

Query: 114 VNNNVNSNN-NKVTANQGYVNQ--GRRVPREAIGISGELESMIADHQKTRGSS-NLVRAS 169
            N+ + SN  N+ + NQG V Q   R+VPREAIG+SGELESMI D+QK +G++ ++VRAS
Sbjct: 98  -NHQLGSNGINQPSNNQGPVQQQQARKVPREAIGLSGELESMIMDNQKAKGNNGSMVRAS 156

Query: 170 SSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNSVMGNVVKKQN 229
           SSN+MLFGNLGN++Q G  G               GN  T +NN          V K   
Sbjct: 157 SSNVMLFGNLGNLKQPGASG---------------GNQTTIQNNGYGNTGGGYGVKKTME 201

Query: 230 DHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDA 289
           +  +       P PAS++  +  SLCRA+STRMDPETLKIMGNEDYK GNFAEALALY+A
Sbjct: 202 EERKTSVT---PIPASNNQDQSGSLCRAISTRMDPETLKIMGNEDYKNGNFAEALALYEA 258

Query: 290 AISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE 349
           AISIDP KASYRSNK+AAL ALGR+LEAVFECREAIRI+PHYHRAHHRLANLYLRLGEVE
Sbjct: 259 AISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVE 318

Query: 350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQ 409
           K+IYHFKHAGPEADQ DI+KAK +Q HLNKCT+AKR RDWNTLI+ET   I  GAD+APQ
Sbjct: 319 KSIYHFKHAGPEADQEDISKAKMVQTHLNKCTEAKRLRDWNTLIKETENTITTGADAAPQ 378

Query: 410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE 469
           +YALQAEA LK ++HQEAD+ L   P FD + +T+++GPIG A  LVV AQV++A GRF 
Sbjct: 379 VYALQAEAFLKTYRHQEADDALSRCPLFDGEMSTKYYGPIGYAGFLVVWAQVHMASGRFV 438

Query: 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP 529
           +A+ AIQ+A K D NN+EV+MV+R+A+ V AARS GN  FK  +F EA AAYG+GL  D 
Sbjct: 439 EAVEAIQRAGKLDGNNREVSMVLRRAQAVTAARSRGNDFFKAGRFQEACAAYGEGLDHDS 498

Query: 530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY 589
            NSVLLCNRAAC SK+GQF++A+ED +AAL VRPGY+KARLRRADC AK+  WE+++ DY
Sbjct: 499 RNSVLLCNRAACLSKIGQFDRAVEDTSAALAVRPGYTKARLRRADCNAKLGNWESAIGDY 558

Query: 590 EILKKEAPDDEEVDQALQE 608
           EILKKE P+DEEV + L E
Sbjct: 559 EILKKETPEDEEVTKGLSE 577

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	608
TAIR|locus:2171860	593	TPR14 "AT5G65160" [Arabidopsis	0.583	0.598	0.732	1.8e-164
TAIR|locus:2184148	594	TPR13 "tetratricopeptide repea	0.583	0.597	0.704	3.6e-148
TAIR|locus:2194739	530	TPR12 "AT1G78120" [Arabidopsis	0.580	0.666	0.519	4.3e-93
TAIR|locus:2076386	682	TTL4 "tetratricopetide-repeat	0.578	0.516	0.494	2.5e-88
TAIR|locus:2041559	691	TTL3 "tetratricopetide-repeat	0.567	0.499	0.492	1.7e-84
TAIR|locus:2009590	699	TTL1 "tetratricopeptide-repeat	0.565	0.492	0.462	1.4e-78
MGI|MGI:1928373	494	Dnajc7 "DnaJ (Hsp40) homolog,	0.514	0.633	0.298	6.5e-30
UNIPROTKB|F1NPY6	486	DNAJC7 "Uncharacterized protei	0.514	0.644	0.292	1.3e-29
UNIPROTKB|F1NPY5	469	DNAJC7 "Uncharacterized protei	0.511	0.663	0.291	1.7e-29
UNIPROTKB|Q99615	494	DNAJC7 "DnaJ homolog subfamily	0.514	0.633	0.295	1.7e-29

TAIR|locus:2171860 TPR14 "AT5G65160" [Arabidopsis thaliana (taxid:3702)]

 Score = 1384 (492.3 bits), Expect = 1.8e-164, Sum P(3) = 1.8e-164
 Identities = 260/355 (73%), Positives = 302/355 (85%)

Query:   254 LCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR 313
             LCRA+STRMDPETLKIMGNEDYK GNFAEALALYDAAI+IDPNKA+YRSNK+AAL ALGR
Sbjct:   226 LCRAISTRMDPETLKIMGNEDYKNGNFAEALALYDAAIAIDPNKAAYRSNKSAALTALGR 285

Query:   314 LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL 373
             +L+AVFECREAIRIEPHYHRAHHRL NLYLRLGEVEK+IYHFKH+GPEAD+ DIAKAK++
Sbjct:   286 ILDAVFECREAIRIEPHYHRAHHRLGNLYLRLGEVEKSIYHFKHSGPEADREDIAKAKTV 345

Query:   374 QAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN 433
             Q HLNKCT+AKR RDWN LI ET   I+ GAD+APQ+YALQAEALLK H+HQEAD+ L  
Sbjct:   346 QTHLNKCTEAKRLRDWNGLITETTNTISSGADAAPQVYALQAEALLKTHRHQEADDALSR 405

Query:   434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493
              P FD+D +TR++GP+G A  LVVRAQV+LA GRF++A+ AIQ+A K D NN+EV M+ R
Sbjct:   406 CPVFDIDASTRYYGPVGYAGFLVVRAQVHLASGRFDEAVEAIQRAGKLDGNNREVIMISR 465

Query:   494 KAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE 553
             +A+ V  AR  GN LFK  +F E    YG+GL  DP NSVLLCNRAACRSKLGQF+K+IE
Sbjct:   466 RAQAVTEARFKGNELFKSGRFQEACAAYGEGLDHDPRNSVLLCNRAACRSKLGQFDKSIE 525

Query:   554 DCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
             DC AAL+VRPGY KARLRRADC AKIEKWE ++ DYEILKKE+P+DE+V + L E
Sbjct:   526 DCTAALSVRPGYGKARLRRADCNAKIEKWELAVGDYEILKKESPEDEQVIRGLSE 580

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2184148 TPR13 "tetratricopeptide repeat 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1314 (467.6 bits), Expect = 3.6e-148, Sum P(2) = 3.6e-148
 Identities = 250/355 (70%), Positives = 295/355 (83%)

Query:   254 LCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR 313
             LCRA+STRMDPETLKIMGNEDYK GNFAEALALY+AAISIDP KASYRSNK+AAL ALGR
Sbjct:   227 LCRAISTRMDPETLKIMGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGR 286

Query:   314 LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL 373
             +LEAVFECREAIRI+PHYHRAHHRLANLYLRLGEVE +IYHFKHAGPEADQ DI+KAK +
Sbjct:   287 ILEAVFECREAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAGPEADQEDISKAKMV 346

Query:   374 QAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN 433
             Q HLNKCT+AKR RDWNTLI+ET   I  GAD+APQ+YALQAEA LK ++HQEAD+ L  
Sbjct:   347 QTHLNKCTEAKRLRDWNTLIKETENTITTGADAAPQVYALQAEAFLKTYRHQEADDALSR 406

Query:   434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493
              P FD + +T+++G IG A  LVV AQV++A GRF +A+ AIQ+A K D NN+EV+MV+R
Sbjct:   407 CPVFDGEMSTKYYGSIGYAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDGNNREVSMVLR 466

Query:   494 KAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE 553
             +A+ V AARS GN  FK  +F E    YG+GL  D  NSVLLCNRAAC SK+GQF++A+E
Sbjct:   467 RAQAVTAARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVE 526

Query:   554 DCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
             D +AAL VRPGY+KARLRRADC AK+  WE+++ DYEIL+KE P+DEEV + L E
Sbjct:   527 DTSAALAVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSE 581

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2194739 TPR12 "AT1G78120" [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 184/354 (51%), Positives = 248/354 (70%)

Query:   256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
             + ++ R+DPETLK MGNE+Y  G F +AL  Y+ AIS DP   +Y SNK+AALI+LGRLL
Sbjct:   151 KPVNHRLDPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLL 210

Query:   316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA 375
             EA   C EA+R+ P Y RAH RLA+L LRLGEVEKA+ H+  AG   +   I + + +  
Sbjct:   211 EASDACEEALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVK 270

Query:   376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435
              L +C +A+R+++WN  ++ET  AI+ GADS+P++YALQ EALL L +H+EA    + G 
Sbjct:   271 CLRRCDEARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGT 330

Query:   436 N-FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494
               FD+D   + FG    + LL+V AQV +A GRFEDA+ A ++AA+ D +++EVN V RK
Sbjct:   331 KRFDIDSFIKIFGLSLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARK 390

Query:   495 AKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED 554
             A+ VA+AR +GN LF  +KF      Y +GL  DPYN++LLCNRAA R KL  FEKAIED
Sbjct:   391 ARAVASARLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIED 450

Query:   555 CNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
             C  AL+++P Y KAR RRAD +AK+EKW+ ++QDYE+L  E P+DEE  +AL E
Sbjct:   451 CTLALSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTE 504

GO:0005739 "mitochondrion" evidence=IDA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2076386 TTL4 "tetratricopetide-repeat thioredoxin-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 176/356 (49%), Positives = 242/356 (67%)

Query:   256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
             +A +   D E +K  GN  Y+ GN+AEALALYD AIS+ P   +YRSN+ AAL A GRL 
Sbjct:   203 KAAAEMSDSEEVKKAGNVMYRKGNYAEALALYDRAISLSPENPAYRSNRAAALAASGRLE 262

Query:   316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA 375
             EAV EC EA+R +P Y RAH RLA+LYLRLGE E A  H   +G   DQ D+ + ++L+ 
Sbjct:   263 EAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSGQCPDQADLQRLQTLEK 322

Query:   376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435
             HL  CT+A++  DW T+I E  AAIA GADS+PQ+ A +AEA L+LH+ +++D  + + P
Sbjct:   323 HLRLCTEARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIP 382

Query:   436 NFDVDETT---RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD-SNNKEVNMV 491
               D   T    + FG + +A +L V+AQV++A GRFE+A+  +++A   D SN+ EV  V
Sbjct:   383 RLDHHHTQPPEKLFGIVCDAYVLCVQAQVDMALGRFENAIVKVERAMTIDHSNSPEVVSV 442

Query:   492 MRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
             +   K VA AR+ GN LF   ++SE    YGDGL LD +NSVL CNRAAC  KLG +EK+
Sbjct:   443 LNNVKNVAKARTRGNELFSSGRYSEASVAYGDGLKLDAFNSVLYCNRAACWFKLGMWEKS 502

Query:   552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
             ++DCN AL ++P Y+KA LRRA  + K+ +WE +++DYE+L+KE P D EV ++LQ
Sbjct:   503 VDDCNQALRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRKELPGDSEVAESLQ 558

GO:0005634 "nucleus" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2041559 TTL3 "tetratricopetide-repeat thioredoxin-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 172/349 (49%), Positives = 232/349 (66%)

Query:   263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             +PE LK MGN+ Y+ G+F+EAL+LYD AI I P  A+YRSN+ AAL AL RL EAV EC 
Sbjct:   219 NPEELKRMGNDMYRRGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECL 278

Query:   323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
             EA+RI+P Y RAH RLA+LYLRLGE E A  H   +G   DQ D+ + ++L+ HL +C +
Sbjct:   279 EAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRRCWE 338

Query:   383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFD---- 438
             A++  DW T I+ET AAIA GADS+PQ+ A +AEA L+L + +++D  +   P  D    
Sbjct:   339 ARKIGDWKTAIKETDAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYH 398

Query:   439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
                  + FG +  A +L ++AQV++A GRFE+A+   ++AA  D  N EV  V+   K V
Sbjct:   399 SQPQVKLFGMVVEAYVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMV 458

Query:   499 AAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
               AR+ GN LF   +FSE    YGDGL  D  NSVL CNRAAC  KLG +EK++EDCN A
Sbjct:   459 VRARTRGNELFSSGRFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHA 518

Query:   559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
             L  +P Y KA LRRA  + K+ +WE +++DYE L++E P D EV ++L+
Sbjct:   519 LKSQPSYIKALLRRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLE 567

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

TAIR|locus:2009590 TTL1 "tetratricopeptide-repeat thioredoxin-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 161/348 (46%), Positives = 224/348 (64%)

Query:   263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             D E +K +GNE Y+ G F EAL LYD AI++ P  A+YRSN+ AALI L R+ EAV EC 
Sbjct:   226 DSEEVKRVGNEMYRKGLFNEALKLYDRAIALSPTNAAYRSNRAAALIGLSRIGEAVKECE 285

Query:   323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
             +A+R +P+Y RAHHRLA L +RLG+V  A  H    G  +D +++ K ++++ HL KC D
Sbjct:   286 DAVRSDPNYGRAHHRLALLLIRLGQVNSARKHLCFLGRPSDPMELQKLEAVEKHLIKCVD 345

Query:   383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN---FDV 439
             A+R  DW T++ E  AAI  GAD +PQ++  + EA LKLH+  +A   L   P    F V
Sbjct:   346 ARRVTDWKTVLIEADAAIVSGADFSPQLFMCKVEAFLKLHRLDDAQSKLLEVPKVEPFPV 405

Query:   440 D-ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
                 TRF G    A +  V+AQ+ +A GRFE+A+ A +KA++ D    EV M+      V
Sbjct:   406 SCSQTRFSGMACEAYIYFVKAQIEMALGRFENAVMAAEKASQIDPRCNEVAMLHNTVTLV 465

Query:   499 AAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
             A AR+ GN L+K  +++E    Y +GL LDP N++L CNRAAC  KLG +E++IEDCN A
Sbjct:   466 ARARARGNDLYKSERYTEASSAYAEGLRLDPCNAILYCNRAACWFKLGMWERSIEDCNQA 525

Query:   559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
             L  +P Y+K  LRRA   +K+E+W A++ DYE L +E P D+EV ++L
Sbjct:   526 LRYQPSYTKPLLRRAASNSKMERWGAAVSDYEALIRELPHDKEVAESL 573

GO:0005634 "nucleus" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

MGI|MGI:1928373 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 6.5e-30, P = 6.5e-30
 Identities = 103/345 (29%), Positives = 166/345 (48%)

Query:   261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFE 320
             + + E+ K  GN  Y   ++ EA   Y  AI + PN ASY  N+ A L+ LGR  EA+ +
Sbjct:    25 KREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGD 84

Query:   321 CREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK------HAGPEADQVDIAKAKSLQ 374
              ++++R++  + R H R    +L LG    A   F+      H   +A Q +   A ++ 
Sbjct:    85 AQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQ-EFKNANAVM 143

Query:   375 AHLNKCTDAK-RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN 433
              +  K  +     RD+  ++     A+   A +  +   L+AE L  L ++ EA     +
Sbjct:   144 EY-EKIAEVDFEKRDFRKVVFCMDRALEF-APACHRFKILKAECLAMLGRYPEAQFVASD 201

Query:   434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA-AIQ---KAAKQDSNNKEVN 489
                  +D T        NA+ L VR      C  +ED +  A+Q   +A +   ++++  
Sbjct:   202 --ILRMDST--------NADALYVRG----LCLYYEDCIEKAVQFFVQALRMAPDHEKAC 247

Query:   490 MVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYN----SVLLCNRAACRSKL 545
             +  R AK + A + +GN  FK+  +      Y + LG+DP N    + L CNR    SKL
Sbjct:   248 VACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKL 307

Query:   546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
              Q E AIEDC  A+ +   Y KA LRRA C+   E++E +++DYE
Sbjct:   308 RQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYE 352

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

UNIPROTKB|F1NPY6 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 342 (125.4 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 101/345 (29%), Positives = 166/345 (48%)

Query:   261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFE 320
             R + E+ K  GN  Y   ++ EA   Y  AI   PN ASY  N+ A L+ LGR  EA+ +
Sbjct:    17 RREAESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASYYGNRAATLMMLGRFREALGD 76

Query:   321 CREAIRIEPHYHRAHHRLANLYLRLGEVEKA------IYHFKHAGPEADQVDIAKAKSLQ 374
              ++++R++  + R H R    +L LG    A      +    H   +A Q ++  A ++ 
Sbjct:    77 AQQSVRLDDSFVRGHLREGKCHLSLGNAMAASRCFQRVLELDHKNTQAQQ-ELKNASTVL 135

Query:   375 AHLNKCTDAK-RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN 433
              +  K  +     RD+  ++     A+   A +  +   L+AE L  L ++ EA     +
Sbjct:   136 EY-EKIAEVDFEKRDFRKVVFCMDRALEF-APACHRFKILKAECLALLGRYPEAQSVASD 193

Query:   434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA-AIQ---KAAKQDSNNKEVN 489
                  +D T        NA+ L VR      C  +ED +  A+Q   +A +   ++++  
Sbjct:   194 --ILRMDST--------NADALYVRG----LCLYYEDCIEKAVQFFVQALRMAPDHEKAC 239

Query:   490 MVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYN----SVLLCNRAACRSKL 545
             +  R AK + A + +GN  FK+  +      Y + LG+DP N    + L CNR    SKL
Sbjct:   240 LACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKL 299

Query:   546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
              + E+AI+DC  A+ +   Y KA LRRA C+   E++E +++DYE
Sbjct:   300 RKLEEAIDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYE 344

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

UNIPROTKB|F1NPY5 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 338 (124.0 bits), Expect = 1.7e-29, P = 1.7e-29
 Identities = 100/343 (29%), Positives = 165/343 (48%)

Query:   263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             + E+ K  GN  Y   ++ EA   Y  AI   PN ASY  N+ A L+ LGR  EA+ + +
Sbjct:     2 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASYYGNRAATLMMLGRFREALGDAQ 61

Query:   323 EAIRIEPHYHRAHHRLANLYLRLGEVEKA------IYHFKHAGPEADQVDIAKAKSLQAH 376
             +++R++  + R H R    +L LG    A      +    H   +A Q ++  A ++  +
Sbjct:    62 QSVRLDDSFVRGHLREGKCHLSLGNAMAASRCFQRVLELDHKNTQAQQ-ELKNASTVLEY 120

Query:   377 LNKCTDAK-RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435
               K  +     RD+  ++     A+   A +  +   L+AE L  L ++ EA     +  
Sbjct:   121 -EKIAEVDFEKRDFRKVVFCMDRALEF-APACHRFKILKAECLALLGRYPEAQSVASD-- 176

Query:   436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA-AIQ---KAAKQDSNNKEVNMV 491
                +D T        NA+ L VR      C  +ED +  A+Q   +A +   ++++  + 
Sbjct:   177 ILRMDST--------NADALYVRG----LCLYYEDCIEKAVQFFVQALRMAPDHEKACLA 224

Query:   492 MRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYN----SVLLCNRAACRSKLGQ 547
              R AK + A + +GN  FK+  +      Y + LG+DP N    + L CNR    SKL +
Sbjct:   225 CRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRK 284

Query:   548 FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
              E+AI+DC  A+ +   Y KA LRRA C+   E++E +++DYE
Sbjct:   285 LEEAIDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYE 327

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

UNIPROTKB|Q99615 DNAJC7 "DnaJ homolog subfamily C member 7" [Homo sapiens (taxid:9606)]

 Score = 342 (125.4 bits), Expect = 1.7e-29, P = 1.7e-29
 Identities = 102/345 (29%), Positives = 167/345 (48%)

Query:   261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFE 320
             + + ET K  GN  Y   ++ EA   Y  AI + P  ASY  N+ A L+ LGR  EA+ +
Sbjct:    25 KREAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGD 84

Query:   321 CREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK------HAGPEADQVDIAKAKSLQ 374
              ++++R++  + R H R    +L LG    A   F+      H   +A Q +   A ++ 
Sbjct:    85 AQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQ-EFKNANAVM 143

Query:   375 AHLNKC-TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN 433
              +     TD ++ RD+  ++     A+   A +  +   L+AE L  L ++ EA     +
Sbjct:   144 EYEKIAETDFEK-RDFRKVVFCMDRALEF-APACHRFKILKAECLAMLGRYPEAQSVASD 201

Query:   434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA-AIQ---KAAKQDSNNKEVN 489
                  +D T        NA+ L VR      C  +ED +  A+Q   +A +   ++++  
Sbjct:   202 --ILRMDST--------NADALYVRG----LCLYYEDCIEKAVQFFVQALRMAPDHEKAC 247

Query:   490 MVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYN----SVLLCNRAACRSKL 545
             +  R AK + A + +GN  FK+  +      Y + LG+DP N    + L CNR    SKL
Sbjct:   248 IACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKL 307

Query:   546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
              + + AIEDC  A+ +   Y KA LRRA C+   E++E +++DYE
Sbjct:   308 RKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYE 352

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	608
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-14
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	4e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-10
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-10
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-08
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-07
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	7e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-04
smart01043	145	smart01043, BTAD, Bacterial transcriptional activa	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.001
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.002
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 32/94 (34%), Positives = 55/94 (58%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           E L  +GN  YK G++ EAL  Y+ A+ +DP+ A    N  AA   LG+  EA+ +  +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           + ++P   +A++ L   Y +LG+ E+A+  ++ A
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 32/94 (34%), Positives = 49/94 (52%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           GN  +K   + EA   Y   L LDP N+    N AA   KLG++E+A+ED   AL + P 
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66

Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598
            +KA       + K+ K+E +++ YE   +  P+
Sbjct: 67  NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 65.4 bits (159), Expect = 4e-11
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE 553
           + K  A  +  GN  ++   F++A   Y   +   P + V   NRAAC + LG +EK +E
Sbjct: 123 RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVE 181

Query: 554 DCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILK-KEAPDDEEVDQALQ 607
           D  AAL + P YSKA  RRA+ +  + K+  ++ D       +   +E+  QA++
Sbjct: 182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVE 236

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 69/359 (19%), Positives = 136/359 (37%), Gaps = 41/359 (11%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +     ++G      G+ A+A   ++ A+SI+P+     +N     I  G   +A+    
Sbjct: 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           + + I+P   RA   LA LYLR G  E+A+   + A  E +  +I  A +L  +      
Sbjct: 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAA-ELNPQEIEPALALAQYYLGKGQ 582

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET 442
            K+      ++ E     A  A  +P+ + +   A L      +A  + K       D  
Sbjct: 583 LKKAL---AILNE----AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-- 633

Query: 443 TRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM---------- 492
                   +A  L++ A        +  A+ ++++A +   +N E  + +          
Sbjct: 634 --------SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685

Query: 493 ----RKAKGVAAARSN--------GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAA 540
               + AK +              G+   +Q  +  A  AY   L   P +S        
Sbjct: 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-SSQNAIKLHR 744

Query: 541 CRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599
                G   +A++   A L   P  +  R   A+ +   + ++ +++ Y+ + K+APD+
Sbjct: 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 62.0 bits (151), Expect = 6e-10
 Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 39/263 (14%)

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA---GPEADQV--DIAKA 370
            A+ + + A++ +P+   A   L  +YL LG+   A    + A   G   +QV   +A+A
Sbjct: 40  AAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARA 99

Query: 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET 430
             LQ              +  ++ E         + A ++ AL+  A L L + + A ++
Sbjct: 100 YLLQ------------GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKS 147

Query: 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490
            +     D        G           AQ+ LA  RF++A A I +    D  N +  +
Sbjct: 148 YEQALAIDPRSLYAKLG----------LAQLALAENRFDEARALIDEVLTADPGNVDALL 197

Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550
           +             G+ L        A AAY   + L P N  +L   A    + G+FE+
Sbjct: 198 L------------KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245

Query: 551 AIEDCNAALNVRPGYSKARLRRA 573
           A +  +A L   P    A   +A
Sbjct: 246 AEKHADALLKKAPNSPLAHYLKA 268

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 60.2 bits (144), Expect = 7e-10
 Identities = 74/306 (24%), Positives = 122/306 (39%), Gaps = 26/306 (8%)

Query: 279 NFAEALALYDAAISIDPNKA-SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA--H 335
           +   ALA+   A++    +A +      A L  LG L EA+    EA+ + P+   A   
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62

Query: 336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE 395
             LA   L+LG +E+A+   + A       ++A+A      L      +    +   ++ 
Sbjct: 63  LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLL-----LEALGKYEEALEL 117

Query: 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLL 455
              A+A   D       L   AL +L  ++EA E  +     D +           A  L
Sbjct: 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPEL-------NELAEAL 170

Query: 456 VVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS 515
           +    +  A GR+E+AL  ++KA K + ++              A  + G    K  K+ 
Sbjct: 171 LALGALLEALGRYEEALELLEKALKLNPDDDAE-----------ALLNLGLLYLKLGKYE 219

Query: 516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575
           EA   Y   L LDP N+  L N A    +LG++E+A+E    AL + P      L     
Sbjct: 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLL 279

Query: 576 FAKIEK 581
            A+  +
Sbjct: 280 LAEALE 285

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG-QFEKAIEDCNAA 558
           A ++ GNALFK   + EA  AY   L LDP N+    N A    KLG  +E+A+ED   A
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 559 LNVRP 563
           L + P
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFEC 321
           + E LK +GN  +K G++ EA+  Y+ A+ +DP+ A    N   A + LG    EA+ + 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 322 REAIRIEP 329
            +A+ ++P
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.1 bits (128), Expect = 8e-08
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECRE 323
           E L  +G      G + EAL L + A+ ++P+  A    N     + LG+  EA+    +
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227

Query: 324 AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNK 379
           A+ ++P    A + LA L L LG  E+A+   + A  E D        +L   L +
Sbjct: 228 ALELDPDNAEALYNLALLLLELGRYEEALEALEKA-LELDPDLYNLGLALLLLLAE 282

Length = 291

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 44/86 (51%)

Query: 514 FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573
           F+ A   Y   + LDP N+ L  +RA    KLG F +A+ D N A+ + P  +KA LR+ 
Sbjct: 18  FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

Query: 574 DCFAKIEKWEASMQDYEILKKEAPDD 599
               K+E+++ +    E     AP D
Sbjct: 78  TACMKLEEYQTAKAALEKGASLAPGD 103

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 534 LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILK 593
            L N      KLG +++A+E    AL + P  + A    A  + K+ K+E +++DYE   
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 594 KEAPDDEEV 602
           +  PD+ + 
Sbjct: 62  ELDPDNAKA 70

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL 338
           +FA A+ LY  AI +DPN A   +++  A I LG   EAV +  +AI ++P   +A+ R 
Sbjct: 17  DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76

Query: 339 ANLYLRLGEVEKA 351
               ++L E + A
Sbjct: 77  GTACMKLEEYQTA 89

Length = 356

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326
           LK  GN+ Y+  +F +A+ LY  AI   P+   Y SN+ A   ALG   + V +   A+ 
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYY-SNRAACHNALGDWEKVVEDTTAALE 188

Query: 327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
           ++P Y +A +R AN Y  LG+   A+     +       +   A++++  L K  ++K
Sbjct: 189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESK 246

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 76/364 (20%), Positives = 140/364 (38%), Gaps = 50/364 (13%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           DP  L ++G      G+F +A      A  +DP  A+ R+    + ++ G   EA+ +  
Sbjct: 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL--QAHLNKC 380
            A +++P   RA   L   YLR G+ +KA+   K    E  Q D A   +L    +L K 
Sbjct: 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL--EKKQPDNASLHNLLGAIYLGKG 479

Query: 381 TDAKRTRDWN---TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF 437
             AK    +    ++  +   A A  A        +Q          Q  ++ L   P  
Sbjct: 480 DLAKAREAFEKALSIEPDFFPAAANLAR-----IDIQEGNPDD--AIQRFEKVLTIDPK- 531

Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE------VNMV 491
                        N   ++  A + L  G  E+A+A ++KAA+ +    E         +
Sbjct: 532 -------------NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578

Query: 492 MRK--AKGVAAARSN--------------GNALFKQAKFSEAAAAYGDGLGLDPYNSVLL 535
            +    K +A                   G A       ++A +++   L L P +++ L
Sbjct: 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638

Query: 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595
              A   + +  + KAI     AL ++P  ++A++  A      ++ E++ +  + L+K+
Sbjct: 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698

Query: 596 APDD 599
            P  
Sbjct: 699 HPKA 702

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 72/365 (19%), Positives = 116/365 (31%), Gaps = 64/365 (17%)

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337
           GN   ALA Y  AI++ PN  +        LI  G   EA       ++  P+   AH+ 
Sbjct: 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL 266

Query: 338 LANLYLRLGEVEKAIYHFKHA---GPE-------ADQVDIAKAKSLQA--HLNKCTDA-- 383
            A +  +    E A    + A    PE       A   +       QA  +LN+      
Sbjct: 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326

Query: 384 ----------------KRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA 427
                            R  +    +        G     P   +L  EA L L   ++A
Sbjct: 327 NSHQARRLLASIQLRLGRVDEAIATLS----PALGLDPDDPAALSLLGEAYLALGDFEKA 382

Query: 428 DETL----KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483
            E L    +  P               NA          L+ G   +A+A ++ AA+ D 
Sbjct: 383 AEYLAKATELDPE--------------NAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428

Query: 484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRS 543
                ++++              +  +  +F +A AA        P N+ L     A   
Sbjct: 429 ELGRADLLL------------ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476

Query: 544 KLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603
             G   KA E    AL++ P +  A    A    +    + ++Q +E +    P +    
Sbjct: 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536

Query: 604 QALQE 608
            AL  
Sbjct: 537 LALAG 541

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 49.1 bits (115), Expect = 3e-06
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 275 YKAGNFAEALALYDAAISIDP---NKASYRSNKTAALIALGRLLEAVFECREAIRIEP-H 330
           Y+ G++ EAL LY+ A+ +DP     A       A L ALGR  EA+    +A+++ P  
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 331 YHRAHHRLANLYLRLGEVEKAIYHFKHA 358
              A   L  LYL+LG+ E+A+ +++ A
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKA 228

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE-VEKAIYH 354
           + A    N   AL  LG   EA+    +A+ ++P    A++ LA  YL+LG+  E+A+  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 355 FKHA 358
            + A
Sbjct: 61  LEKA 64

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH 330
           YK G + EAL  Y+ A+ +DP+ A    N   A   LG+  EA+    +A+ ++P+
Sbjct: 45  YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI-EKWEASMQDY 589
           N+  L N      KLG +++AIE    AL + P  ++A    A  + K+ + +E +++D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 590 E 590
           E
Sbjct: 62  E 62

Length = 69

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 294 DPNKASYRSNKTAALIALGRLLEAVFECREAIRIE-------PHYHRAHHRLANLYLRLG 346
            P+ A+  +N    L  LG   EA+    +A+ +        P   RA + LA LYL LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 347 EVEKAIYHFKHA 358
           + ++A+ + + A
Sbjct: 61  DYDEALEYLEKA 72

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565
           L N      KLG++++A+E    AL + P  
Sbjct: 4   LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +     +AG++ EALA  +AA++  P  A        AL+  GRL EA    R A+  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Length = 65

>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 306 AALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            AL+ALGR  EA+      + ++P   R H  L     R G   +A+  ++  
Sbjct: 69  EALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRL 121

Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 76/355 (21%), Positives = 128/355 (36%), Gaps = 74/355 (20%)

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337
           G    A   Y+ A++IDP     +       +A  R  EA     E +  +P    A   
Sbjct: 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL 198

Query: 338 LANLYLRLGEVEKAIYHFKHA---GPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQ 394
             +L L LG +E A+  ++ A    P    V +A A  L     +  +A++  D   L++
Sbjct: 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE-AGEFEEAEKHAD--ALLK 255

Query: 395 ETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET----LKNGPNF------------- 437
           +          ++P  + L+A    +   +++A ET    LK+ P +             
Sbjct: 256 KAP--------NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307

Query: 438 --DVDETTRFFGPIGNA---NLLVVR--AQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490
             ++++  ++   I      +    R  A + L  GR ++A+A +  A   D ++     
Sbjct: 308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP---- 363

Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF-- 548
                   AA    G A      F +AA        LDP N       AA R++LG    
Sbjct: 364 --------AALSLLGEAYLALGDFEKAAEYLAKATELDPEN-------AAARTQLGISKL 408

Query: 549 -----EKAIEDCNAALNVRPGYSKARL---------RRAD-CFAKIEKWEASMQD 588
                 +AI D   A  + P   +A L          + D   A  +K E    D
Sbjct: 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 0.001
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D E L  +G    K G + EAL  Y+ A+ +DP+ A    N    L+ LGR  EA+    
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260

Query: 323 EAIRIEP-HYHRAHHRLANLYLRLGEVEKA 351
           +A+ ++P  Y+     L  L   L  +EKA
Sbjct: 261 KALELDPDLYNLGLALLLLLAEALELLEKA 290

Length = 291

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 28/96 (29%), Positives = 41/96 (42%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D E L   G    + GNF EA+++   A  + P      +   AAL  LGR  EA    R
Sbjct: 99  DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +A+ + P+     + L    L  G++E A      A
Sbjct: 159 QALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194

Length = 257

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565
           L N      KLG +++A+E    AL + P  
Sbjct: 4   LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 544 KLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600
           + G +++A+    AAL   P  ++A L   +   +  +   +           PDD 
Sbjct: 9   RAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDDP 65

Length = 65

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 320 ECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
              +A+ ++P+   A++ LA L L LG+ ++A+
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 64/313 (20%), Positives = 107/313 (34%), Gaps = 56/313 (17%)

Query: 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS--------YRSNKTAALIALGRLL 315
           PE   ++G     AG+  +A++ +   +++ P+ A         Y   K  A        
Sbjct: 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA-------- 652

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA 375
           +A+   + A+ ++P    A   LA L L     E A    K        +     K+   
Sbjct: 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK-------SLQKQHPKAALG 705

Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET----L 431
              +     R +D+   IQ  R A+     S  Q       ALL      EA +T    L
Sbjct: 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWL 763

Query: 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491
           K  PN              +A L    A++ LA   ++ A+   Q   K+  +N      
Sbjct: 764 KTHPN--------------DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN------ 803

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
                  A   +N   L+ + K   A       L L P    +L        + G+ ++A
Sbjct: 804 -------AVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRA 856

Query: 552 IEDCNAALNVRPG 564
           +     A+N+ P 
Sbjct: 857 LPLLRKAVNIAPE 869

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
           A +  G   EA+     A+   P    A   L    LR G + +A 
Sbjct: 6   AALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAA 51

Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	608
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.96
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
KOG1126	638	consensus DNA-binding cell division cycle control	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.93
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.92
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.92
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.92
KOG2076	895	consensus RNA polymerase III transcription factor	99.92
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.9
PRK14574	822	hmsH outer membrane protein; Provisional	99.89
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.88
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.88
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.88
PRK12370	553	invasion protein regulator; Provisional	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.87
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.87
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.86
KOG2076	895	consensus RNA polymerase III transcription factor	99.86
KOG1129	478	consensus TPR repeat-containing protein [General f	99.85
PRK11189	296	lipoprotein NlpI; Provisional	99.85
KOG1125	579	consensus TPR repeat-containing protein [General f	99.84
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.84
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.84
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.83
PRK12370	553	invasion protein regulator; Provisional	99.83
PRK11189	296	lipoprotein NlpI; Provisional	99.83
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.82
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.82
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.8
KOG2003	840	consensus TPR repeat-containing protein [General f	99.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.79
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.79
PLN03218	1060	maturation of RBCL 1; Provisional	99.79
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.78
KOG1129	478	consensus TPR repeat-containing protein [General f	99.78
PLN02789	320	farnesyltranstransferase	99.78
PLN03218	1060	maturation of RBCL 1; Provisional	99.77
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.74
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.72
PLN03077	857	Protein ECB2; Provisional	99.71
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.71
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.71
KOG1125	579	consensus TPR repeat-containing protein [General f	99.71
PLN02789	320	farnesyltranstransferase	99.7
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.69
PLN03077	857	Protein ECB2; Provisional	99.68
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.68
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.61
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.6
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.6
KOG0553	304	consensus TPR repeat-containing protein [General f	99.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.59
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.57
PRK15359	144	type III secretion system chaperone protein SscB;	99.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.56
PRK04841	903	transcriptional regulator MalT; Provisional	99.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.55
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.51
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.51
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.5
KOG0553	304	consensus TPR repeat-containing protein [General f	99.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.49
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.46
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.45
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.45
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.44
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.43
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.41
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.39
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.37
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.35
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.34
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.29
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.28
PRK04841	903	transcriptional regulator MalT; Provisional	99.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.21
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.18
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.18
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.16
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.16
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.16
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.16
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.15
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.15
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.15
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.13
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.11
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.1
KOG4234	271	consensus TPR repeat-containing protein [General f	99.1
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.08
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.07
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.07
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.05
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.05
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.05
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
PRK15331	165	chaperone protein SicA; Provisional	99.0
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.0
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.98
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.97
PRK10803	263	tol-pal system protein YbgF; Provisional	98.95
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.94
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.94
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.93
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.9
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.9
PRK15331	165	chaperone protein SicA; Provisional	98.89
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.89
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.86
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.85
PRK11906	458	transcriptional regulator; Provisional	98.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.82
KOG4234	271	consensus TPR repeat-containing protein [General f	98.81
PRK10803	263	tol-pal system protein YbgF; Provisional	98.81
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.79
PRK11906	458	transcriptional regulator; Provisional	98.77
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.77
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
PF12688	120	TPR_5: Tetratrico peptide repeat	98.73
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.72
PF13371	73	TPR_9: Tetratricopeptide repeat	98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.64
PF13512	142	TPR_18: Tetratricopeptide repeat	98.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.63
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.62
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.62
PF12688	120	TPR_5: Tetratrico peptide repeat	98.6
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.59
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.56
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.56
KOG4555	175	consensus TPR repeat-containing protein [Function	98.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.52
KOG1586	288	consensus Protein required for fusion of vesicles	98.52
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.5
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.47
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.44
PF13512	142	TPR_18: Tetratricopeptide repeat	98.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.41
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.39
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.38
KOG2471	696	consensus TPR repeat-containing protein [General f	98.37
KOG4555	175	consensus TPR repeat-containing protein [Function	98.36
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.36
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.35
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.35
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.32
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.32
KOG2471	696	consensus TPR repeat-containing protein [General f	98.32
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.29
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.28
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.27
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.26
KOG1585	308	consensus Protein required for fusion of vesicles	98.26
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.22
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.18
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.11
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.07
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.05
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.04
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.02
KOG1585	308	consensus Protein required for fusion of vesicles	98.02
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.02
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.01
KOG1586	288	consensus Protein required for fusion of vesicles	98.0
PF13428	44	TPR_14: Tetratricopeptide repeat	98.0
PF13428	44	TPR_14: Tetratricopeptide repeat	97.98
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.96
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.94
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.94
KOG1258	577	consensus mRNA processing protein [RNA processing	97.94
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.88
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.85
PF13431	34	TPR_17: Tetratricopeptide repeat	97.83
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.82
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.8
PF13431	34	TPR_17: Tetratricopeptide repeat	97.79
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.76
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.73
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.72
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.68
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.66
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.61
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.6
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.59
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.58
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.55
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.55
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.54
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.45
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.36
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.28
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.24
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.13
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.13
KOG1258	577	consensus mRNA processing protein [RNA processing	97.12
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.09
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.08
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.0
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.98
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.89
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.89
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.85
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.78
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.76
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.74
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.69
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.68
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.66
PRK10941	269	hypothetical protein; Provisional	96.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.57
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.57
KOG1310	758	consensus WD40 repeat protein [General function pr	96.44
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.43
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.37
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.35
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.35
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.34
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.34
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.32
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.32
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.3
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.26
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.26
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.22
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.16
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.13
PRK10941	269	hypothetical protein; Provisional	96.13
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.09
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.08
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.06
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.02
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.97
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.96
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.96
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.95
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.94
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.91
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.86
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.85
KOG1310	758	consensus WD40 repeat protein [General function pr	95.83
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.82
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.79
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.63
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.57
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.46
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.42
PRK11619	644	lytic murein transglycosylase; Provisional	95.31
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.24
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.09
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.03
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.99
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.93
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.77
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.75
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.46
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	94.39
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.38
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.18
KOG1463	411	consensus 26S proteasome regulatory complex, subun	94.16
KOG3364	149	consensus Membrane protein involved in organellar	94.14
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.05
KOG3364	149	consensus Membrane protein involved in organellar	93.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.75
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.71
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.55
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.46
KOG2581	493	consensus 26S proteasome regulatory complex, subun	93.35
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.3
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.21
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.18
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.94
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.6
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.21
COG2912	269	Uncharacterized conserved protein [Function unknow	92.0
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	91.96
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.9
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.89
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	91.53
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.51
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	91.39
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.14
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.09
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.08
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.92
COG2912	269	Uncharacterized conserved protein [Function unknow	90.86
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.86
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.82
COG5159	421	RPN6 26S proteasome regulatory complex component [	90.78
KOG2581	493	consensus 26S proteasome regulatory complex, subun	90.56
PRK11619	644	lytic murein transglycosylase; Provisional	90.56
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	90.44
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.26
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.19
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.94
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.83
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.78
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	89.77
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.64
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.37
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.11
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.49
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.35
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	87.78
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	86.67
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	86.33
KOG0529	421	consensus Protein geranylgeranyltransferase type I	86.07
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.77
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.71
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.52
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.43
COG3947	361	Response regulator containing CheY-like receiver a	85.03
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	84.77
smart00299	140	CLH Clathrin heavy chain repeat homology.	84.54
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.1
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	83.67
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.59
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	83.2
COG3947	361	Response regulator containing CheY-like receiver a	82.88
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	82.81
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.59
COG4941	415	Predicted RNA polymerase sigma factor containing a	82.31
KOG0687	393	consensus 26S proteasome regulatory complex, subun	82.06
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.0
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.87
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	81.8
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.72
KOG4014	248	consensus Uncharacterized conserved protein (conta	81.63
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	80.35
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	80.03

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-43  Score=351.63  Aligned_cols=370  Identities=18%  Similarity=0.156  Sum_probs=338.3

Q ss_pred             CccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCC---------------CCCcchhHHHHhh--hCCCCHHH
Q 040048          208 NTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPAS---------------SSSAEPTSLCRAL--STRMDPET  266 (608)
Q Consensus       208 ~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~---------------~~~~~a~~~~~~~--~~~~~~~~  266 (608)
                      .++..+|++.++  ++|++++..  .+.|...|+.++.+.+.               +..+.+...+...  +.|....+
T Consensus       107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca  186 (966)
T KOG4626|consen  107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA  186 (966)
T ss_pred             hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence            456677777777  688887766  56777777777777763               2333455555443  23666778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG  346 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  346 (608)
                      ...+|+.+-..|+..+|..+|.+|++.+|..+.+|.++|.++...|+...|+..|+++++++|+..++|++||.+|...+
T Consensus       187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~  266 (966)
T KOG4626|consen  187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR  266 (966)
T ss_pred             hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048          347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE  426 (608)
Q Consensus       347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e  426 (608)
                      .+++|+.+|.+++. +.|++      ..++-+++.+|..+|+.+-||..|+++++..|.. +++|.++|.++...|+..+
T Consensus       267 ~~d~Avs~Y~rAl~-lrpn~------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd~G~V~e  338 (966)
T KOG4626|consen  267 IFDRAVSCYLRALN-LRPNH------AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKDKGSVTE  338 (966)
T ss_pred             cchHHHHHHHHHHh-cCCcc------hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHhccchHH
Confidence            99999999999999 88988      7889999999999999999999999999999988 6899999999999999999


Q ss_pred             HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048          427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN  506 (608)
Q Consensus       427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~  506 (608)
                      |..+|.+++.+.|..          +.++.++|.+|..+|.+++|..+|.++++..|....+..            ++|.
T Consensus       339 a~~cYnkaL~l~p~h----------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n------------NLa~  396 (966)
T KOG4626|consen  339 AVDCYNKALRLCPNH----------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN------------NLAS  396 (966)
T ss_pred             HHHHHHHHHHhCCcc----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh------------hHHH
Confidence            999999999999984          999999999999999999999999999999999888876            9999


Q ss_pred             HHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          507 ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM  586 (608)
Q Consensus       507 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  586 (608)
                      +|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+||.++|..++++.+||.+|...|+..+|+
T Consensus       397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHhh
Q 040048          587 QDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       587 ~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ..|+.++++.|+.+++...|.
T Consensus       477 ~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  477 QSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             HHHHHHHccCCCCchhhhHHH
Confidence            999999999999999877653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=5e-39  Score=322.44  Aligned_cols=351  Identities=20%  Similarity=0.160  Sum_probs=304.3

Q ss_pred             ccCCCcccccccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 040048          227 KQNDHPQNHYNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNK  304 (608)
Q Consensus       227 ~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l  304 (608)
                      +.++.++.+-..+-.+...+...++...++...  .|...++|.++|.++...|+.+.|..+|.++|+++|+...++..+
T Consensus       111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l  190 (966)
T KOG4626|consen  111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL  190 (966)
T ss_pred             ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence            335555555545555555556666777776653  367788888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHH
Q 040048          305 TAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK  384 (608)
Q Consensus       305 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~  384 (608)
                      |.++..+|+..+|..+|.++++..|..+.+|.+||.++...|+...|+..|++++. ++|..      +.+|+++|.++.
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-ldP~f------~dAYiNLGnV~k  263 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-LDPNF------LDAYINLGNVYK  263 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc-CCCcc------hHHHhhHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888 88887      788889999999


Q ss_pred             HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048          385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA  464 (608)
Q Consensus       385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~  464 (608)
                      ..+.++.|+..|.+++...|.. ..++.++|.+|.++|..+-|+..|++++++.|..          ..++.++|..+-.
T Consensus       264 e~~~~d~Avs~Y~rAl~lrpn~-A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F----------~~Ay~NlanALkd  332 (966)
T KOG4626|consen  264 EARIFDRAVSCYLRALNLRPNH-AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF----------PDAYNNLANALKD  332 (966)
T ss_pred             HHhcchHHHHHHHHHHhcCCcc-hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc----------hHHHhHHHHHHHh
Confidence            9999999999999998888877 4678888888889999999999999999988886          7888889999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048          465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK  544 (608)
Q Consensus       465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  544 (608)
                      .|+..+|+.+|.+++.+.|++.+...            ++|.++.++|.+++|..+|.++++..|..+.++.+||.+|.+
T Consensus       333 ~G~V~ea~~cYnkaL~l~p~hadam~------------NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq  400 (966)
T KOG4626|consen  333 KGSVTEAVDCYNKALRLCPNHADAMN------------NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ  400 (966)
T ss_pred             ccchHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence            99999999999999999998888875            999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          545 LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|++++|+.+|+.++.+.|..++++.++|..|..+|+...|+.+|.+|+.++|...++...|.
T Consensus       401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa  463 (966)
T KOG4626|consen  401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA  463 (966)
T ss_pred             cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence            999999999999999999999999999999999999999999999999999999999887764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.2e-30  Score=289.13  Aligned_cols=314  Identities=20%  Similarity=0.283  Sum_probs=275.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      +..+..+|+.++..|+|++|+.+|+++|.+.|+ +..|.++|.||..+|++++|+..++++++++|++..+|+.+|.+|.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            557889999999999999999999999999996 7789999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHH-H-----------------------------HHHHH-----------------
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKA-K-----------------------------SLQAH-----------------  376 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~-~-----------------------------~~~~~-----------------  376 (608)
                      .+|++++|+..|..+.. +++...... .                             ....+                 
T Consensus       206 ~lg~~~eA~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       206 GLGKYADALLDLTASCI-IDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HcCCHHHHHHHHHHHHH-hCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            99999999988876643 332111000 0                             00000                 


Q ss_pred             ----------HHHhHHH---HHhhcHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048          377 ----------LNKCTDA---KRTRDWNTLIQETRAAIAGGA--DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE  441 (608)
Q Consensus       377 ----------~~~~~~~---~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  441 (608)
                                ..++...   ...+.|++|+..|+++++.+.  .....++..+|.++..+|++++|+..|++++.++|..
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~  364 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV  364 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence                      1111111   123579999999999998752  2335678999999999999999999999999999975


Q ss_pred             cccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY  521 (608)
Q Consensus       442 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~  521 (608)
                                ...++.+|.++...|++++|+..|+++++.+|++..++.            .+|.++...|++++|+.+|
T Consensus       365 ----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       365 ----------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY------------HRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHH
Confidence                      889999999999999999999999999999999998876            8999999999999999999


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048          522 GDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       522 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      ++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++..+|++++|++.|+++++++|++..
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=2.3e-30  Score=286.19  Aligned_cols=326  Identities=12%  Similarity=0.008  Sum_probs=296.0

Q ss_pred             CCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          245 SSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR  322 (608)
Q Consensus       245 ~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  322 (608)
                      .+...++..+++.++.  |.++++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus        55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~  134 (656)
T PRK15174         55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE  134 (656)
T ss_pred             cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444455666666643  78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048          323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG  402 (608)
Q Consensus       323 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  402 (608)
                      +++.++|++..++..++.++...|++++|+..+.+++. ..|+...      .+... ..+...|++++|+..+++++..
T Consensus       135 ~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~-~~P~~~~------a~~~~-~~l~~~g~~~eA~~~~~~~l~~  206 (656)
T PRK15174        135 QAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ-EVPPRGD------MIATC-LSFLNKSRLPEDHDLARALLPF  206 (656)
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCCCCHH------HHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999998887 7777632      22222 3467889999999999999998


Q ss_pred             CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHH
Q 040048          403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED----ALAAIQKA  478 (608)
Q Consensus       403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a  478 (608)
                      .|.........++.++...|++++|+..|++++...|++          ..++..+|.++...|++++    |+..|+++
T Consensus       207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence            765545566777899999999999999999999999985          8899999999999999986    89999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          479 AKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       479 l~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      +.++|++..++.            .+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus       277 l~l~P~~~~a~~------------~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        277 LQFNSDNVRIVT------------LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             HhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999988876            88999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       559 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      +...|++..++..+|.++...|++++|+..|+++++.+|++.
T Consensus       345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999988888889999999999999999999999999864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.7e-30  Score=287.99  Aligned_cols=335  Identities=16%  Similarity=0.177  Sum_probs=236.9

Q ss_pred             ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK  297 (608)
Q Consensus       220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~  297 (608)
                      .+|+.+.+.  ++.|...|..++...+                  ++..|.++|.++...|++++|+..++++++++|++
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p------------------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~  193 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECKP------------------DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY  193 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCC------------------chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC
Confidence            556666555  6666666665554432                  45678888889999999999999999999999988


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------------
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECREAIRI--------------------------------------------------  327 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------------------------------------------------  327 (608)
                      ..+|+.+|.+|..+|++++|+..|..++.+                                                  
T Consensus       194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (615)
T TIGR00990       194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP  273 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence            888888888888888888887654333211                                                  


Q ss_pred             -----------------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          328 -----------------------------------------------------EPHYHRAHHRLANLYLRLGEVEKAIYH  354 (608)
Q Consensus       328 -----------------------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~  354 (608)
                                                                           .|+...++..+|.++..+|++++|+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~  353 (615)
T TIGR00990       274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD  353 (615)
T ss_pred             CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                                                 233344566666666667777777777


Q ss_pred             HHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcC
Q 040048          355 FKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG  434 (608)
Q Consensus       355 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~a  434 (608)
                      |++++. ++|..      ...++.++.++...|++++|+..++++++.+|++ +.++..+|.++...|++++|+..|+++
T Consensus       354 ~~kal~-l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~ka  425 (615)
T TIGR00990       354 LSKSIE-LDPRV------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSED-PDIYYHRAQLHFIKGEFAQAGKDYQKS  425 (615)
T ss_pred             HHHHHH-cCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777766 66655      4556666666777777777777777777776665 456666777777777777777777777


Q ss_pred             CCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048          435 PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF  514 (608)
Q Consensus       435 l~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~  514 (608)
                      +.++|++          ..++..+|.++..+|++++|+..|++++...|+++.++.            .+|.++...|++
T Consensus       426 l~l~P~~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~------------~lg~~~~~~g~~  483 (615)
T TIGR00990       426 IDLDPDF----------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN------------YYGELLLDQNKF  483 (615)
T ss_pred             HHcCccC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHccCH
Confidence            7776653          566666777777777777777777777777777666654            677888888888


Q ss_pred             HHHHHHHHHhhcCCCCCHHH------HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          515 SEAAAAYGDGLGLDPYNSVL------LCNRAACR-SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ  587 (608)
Q Consensus       515 ~eA~~~~~~al~~~p~~~~~------~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~  587 (608)
                      ++|+..|++++.+.|.....      +...+.++ ...|++++|+.+|++++.++|++..++..+|.++..+|++++|+.
T Consensus       484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~  563 (615)
T TIGR00990       484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK  563 (615)
T ss_pred             HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            88888888888877754222      22223333 336788888888888888888887788888888888888888888


Q ss_pred             HHHHHHHhCCCCHHH
Q 040048          588 DYEILKKEAPDDEEV  602 (608)
Q Consensus       588 ~~~~al~l~P~~~~~  602 (608)
                      +|++++++.+...+.
T Consensus       564 ~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       564 LFERAAELARTEGEL  578 (615)
T ss_pred             HHHHHHHHhccHHHH
Confidence            888888887765554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=3e-29  Score=291.38  Aligned_cols=373  Identities=14%  Similarity=0.127  Sum_probs=266.7

Q ss_pred             ccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCC---------------CCcchhHHHHhh--hC
Q 040048          202 GVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASS---------------SSAEPTSLCRAL--ST  260 (608)
Q Consensus       202 A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~---------------~~~~a~~~~~~~--~~  260 (608)
                      |+..|.+++...|.+...  .++.++...  +++|...|+.++...+.+               ..+++...+...  ..
T Consensus       484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  563 (899)
T TIGR02917       484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN  563 (899)
T ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            555566666666655544  444444333  445555555554443321               222333333333  22


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.+...++.++..+...|++++|+.++++++...|.++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus       564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  643 (899)
T TIGR02917       564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD  643 (899)
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            45555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      ++...|++++|+..|++++. ..|++      ...+..++.++...|++++|+..++.+....|.. +..+..+|.++..
T Consensus       644 ~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~  715 (899)
T TIGR02917       644 AYAVMKNYAKAITSLKRALE-LKPDN------TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-ALGFELEGDLYLR  715 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHh-cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-hHHHHHHHHHHHH
Confidence            66666666666666666666 56655      3455556666666666666666666666665554 3556667777777


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      .|++++|+..|++++...|+           ...+..++.++...|++++|+..+++++...|++..++.          
T Consensus       716 ~g~~~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----------  774 (899)
T TIGR02917       716 QKDYPAAIQAYRKALKRAPS-----------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT----------  774 (899)
T ss_pred             CCCHHHHHHHHHHHHhhCCC-----------chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH----------
Confidence            77777777777777776665           245566777777777777777777777777777766554          


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                        .+|.++...|++++|+.+|+++++..|+++.++..+|.++...|+ .+|+.++++++.+.|+++..+..+|.++...|
T Consensus       775 --~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  851 (899)
T TIGR02917       775 --ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG  851 (899)
T ss_pred             --HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence              889999999999999999999999999999999999999999999 88999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          581 KWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       581 ~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ++++|+.+|+++++++|.+++++..|
T Consensus       852 ~~~~A~~~~~~a~~~~~~~~~~~~~l  877 (899)
T TIGR02917       852 EADRALPLLRKAVNIAPEAAAIRYHL  877 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            99999999999999999999887655

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=1.3e-28  Score=286.04  Aligned_cols=386  Identities=17%  Similarity=0.222  Sum_probs=307.5

Q ss_pred             ccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCC---------------CCcchhHHHHhhh--C
Q 040048          202 GVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASS---------------SSAEPTSLCRALS--T  260 (608)
Q Consensus       202 A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~---------------~~~~a~~~~~~~~--~  260 (608)
                      |...|.++....|.....  .+|.++...  +++|...|..++...+..               ..+++...+..+.  .
T Consensus       382 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  461 (899)
T TIGR02917       382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ  461 (899)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            555566666666665444  455544443  566677777666655432               2223444444443  2


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.++..+..+|.++...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..|++++...|.+..++..++.
T Consensus       462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  541 (899)
T TIGR02917       462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG  541 (899)
T ss_pred             CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      ++...|++++|+..+++++. .+|.+      ...++.++..+...|++++|+..+++++...|.+ +..+..+|.++..
T Consensus       542 ~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~  613 (899)
T TIGR02917       542 LYLRTGNEEEAVAWLEKAAE-LNPQE------IEPALALAQYYLGKGQLKKALAILNEAADAAPDS-PEAWLMLGRAQLA  613 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHH-hCccc------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence            99999999999999999988 77776      4566777888888888999998888888887766 4678888888888


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH----
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK----  496 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----  496 (608)
                      .|++++|+..|+++++..|.+          ..++..+|.++...|++++|+..|++++...|++...+..+..+.    
T Consensus       614 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  683 (899)
T TIGR02917       614 AGDLNKAVSSFKKLLALQPDS----------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK  683 (899)
T ss_pred             cCCHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            899999999888888887764          677888888888888888888888888888888776654432220    


Q ss_pred             ------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          497 ------------------GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       497 ------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                                        ....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|++.++++
T Consensus       684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~  762 (899)
T TIGR02917       684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAW  762 (899)
T ss_pred             CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                              13345677888888888888888888888887776 66777888888888888888888888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       559 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ++..|++..+++.+|.+|..+|++++|+.+|+++++.+|+++.++..|
T Consensus       763 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  810 (899)
T TIGR02917       763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL  810 (899)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            888888888888888888888888888888888888888887776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1e-27  Score=282.48  Aligned_cols=332  Identities=15%  Similarity=0.142  Sum_probs=282.1

Q ss_pred             CCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHH
Q 040048          245 SSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS--------------YRSNKTAAL  308 (608)
Q Consensus       245 ~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~--------------~~~~la~~~  308 (608)
                      .+..++|...++..+.  |.+++++..+|.+++..|++++|+.+|+++++.+|++..              ....+|.++
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            3445566666666543  788999999999999999999999999999999998643              123558889


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHH---------------
Q 040048          309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL---------------  373 (608)
Q Consensus       309 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~---------------  373 (608)
                      ...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++. ++|.+......+               
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~-~~p~~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR-MDPGNTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 888764322111               


Q ss_pred             ---------------------HHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048          374 ---------------------QAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK  432 (608)
Q Consensus       374 ---------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~  432 (608)
                                           ..+..++..+...|++++|+..|+++++.+|++ +.++..+|.+|...|++++|+..++
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                 122345667778899999999999999999987 5688999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------
Q 040048          433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK--------------------------------  480 (608)
Q Consensus       433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------------  480 (608)
                      +++...|++          +..++.++.++...+++++|+..++++..                                
T Consensus       520 ~al~~~P~~----------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~  589 (1157)
T PRK11447        520 RLAQQKPND----------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE  589 (1157)
T ss_pred             HHHHcCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence            999999875          66666677777777777777776665432                                


Q ss_pred             --------hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          481 --------QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       481 --------~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  552 (608)
                              ..|.+..            .+..+|.++...|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+
T Consensus       590 ~eA~~~l~~~p~~~~------------~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~  657 (1157)
T PRK11447        590 AEAEALLRQQPPSTR------------IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR  657 (1157)
T ss_pred             HHHHHHHHhCCCCch------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence                    2233333            33589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      +.|+++++..|+++.++..+|.++..+|++++|+++|++++...|+++
T Consensus       658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence            999999999999999999999999999999999999999999887654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=2e-27  Score=262.93  Aligned_cols=310  Identities=14%  Similarity=0.089  Sum_probs=284.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      ..-+...+..+...|++++|+..++.++...|+++.+++.+|.+....|++++|+..|++++.++|+++.++..+|.++.
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~  121 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL  121 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            33466678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK  423 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~  423 (608)
                      ..|++++|+..|++++. ++|++      ...+..++.++...|++++|+..+.+++...|+... .+..++ .+...|+
T Consensus       122 ~~g~~~~Ai~~l~~Al~-l~P~~------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~-~l~~~g~  192 (656)
T PRK15174        122 KSKQYATVADLAEQAWL-AFSGN------SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCL-SFLNKSR  192 (656)
T ss_pred             HcCCHHHHHHHHHHHHH-hCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHH-HHHHcCC
Confidence            99999999999999999 89988      667888899999999999999999999999888754 444443 4889999


Q ss_pred             hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                      +++|+..+++++...|..         .......++.++...|++++|+..|++++...|++..++.            .
T Consensus       193 ~~eA~~~~~~~l~~~~~~---------~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~------------~  251 (656)
T PRK15174        193 LPEDHDLARALLPFFALE---------RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR------------S  251 (656)
T ss_pred             HHHHHHHHHHHHhcCCCc---------chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH------------H
Confidence            999999999998887532         1344566788999999999999999999999999988775            8


Q ss_pred             HHHHHHHcCCHHH----HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          504 NGNALFKQAKFSE----AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       504 lg~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      +|.++...|++++    |+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~  331 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV  331 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            9999999999996    899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          580 EKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      |++++|+..|+++++.+|++..+.
T Consensus       332 G~~~eA~~~l~~al~~~P~~~~~~  355 (656)
T PRK15174        332 GQYTAASDEFVQLAREKGVTSKWN  355 (656)
T ss_pred             CCHHHHHHHHHHHHHhCccchHHH
Confidence            999999999999999999987644

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=4.7e-28  Score=285.30  Aligned_cols=371  Identities=14%  Similarity=0.071  Sum_probs=300.4

Q ss_pred             cccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHH
Q 040048          201 SGVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYK  276 (608)
Q Consensus       201 ~A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~  276 (608)
                      .|+..|.+++..+|+...+  .+|.++...  +++|+..|+.++...+.....   .....+........+..+|.++..
T Consensus       287 ~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~---~~~~~ll~~~~~~~~~~~g~~~~~  363 (1157)
T PRK11447        287 KAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR---DKWESLLKVNRYWLLIQQGDAALK  363 (1157)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch---hHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3777788888888887766  788877666  777888888887776653311   011111111122334566889999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH----------------
Q 040048          277 AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN----------------  340 (608)
Q Consensus       277 ~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~----------------  340 (608)
                      .|++++|+.+|++++.++|++..++..+|.++...|++++|+..|+++++++|++..++..++.                
T Consensus       364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~  443 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS  443 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999998776655544                


Q ss_pred             --------------------------HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHH
Q 040048          341 --------------------------LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQ  394 (608)
Q Consensus       341 --------------------------~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  394 (608)
                                                ++...|++++|+..|++++. ++|++      ...++.++.++...|++++|+.
T Consensus       444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~-~~P~~------~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA-LDPGS------VWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHcCCHHHHHH
Confidence                                      44567999999999999999 99988      5678899999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccccc------------------------------
Q 040048          395 ETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTR------------------------------  444 (608)
Q Consensus       395 ~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~------------------------------  444 (608)
                      .+++++...|++. ..++.++..+...+++++|+..++++..........                              
T Consensus       517 ~l~~al~~~P~~~-~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~  595 (1157)
T PRK11447        517 LMRRLAQQKPNDP-EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL  595 (1157)
T ss_pred             HHHHHHHcCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999988774 556666777777777777777776654321110000                              


Q ss_pred             ccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048          445 FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG  524 (608)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  524 (608)
                      +.....+..++..+|.++...|++++|+..|+++++.+|++..++.            .+|.++...|++++|+..|+++
T Consensus       596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~------------~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL------------GLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHH
Confidence            0001123677889999999999999999999999999999998876            8999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS------KARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       525 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      +...|+++.++..+|.++...|++++|+++|++++...|+++      .++..+|.++...|++++|+..|++++.
T Consensus       664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999876543      4667789999999999999999999986

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.96  E-value=2.5e-27  Score=223.65  Aligned_cols=335  Identities=19%  Similarity=0.252  Sum_probs=302.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      +.+.+-.+.+|..++..|++..|+..|..|++.+|++..+++.+|.+|..+|+-.-|+..+.+++++.|+...+....|.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHH---------HHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAK---------AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY  411 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  411 (608)
                      +++.+|++++|...|+.++. -+|++...         ......+......+...||+..++.....++++.|-+ ..++
T Consensus       115 vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-a~l~  192 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-ASLR  192 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-hHHH
Confidence            99999999999999999998 77754221         1112223334445666789999999999999998877 4788


Q ss_pred             HHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048          412 ALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV  491 (608)
Q Consensus       412 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  491 (608)
                      ...+.+|...|+...|+..++.+-++..++          .+.++.++.+++..|+.+.++...+++++++|++...+..
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn----------Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~  262 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQDN----------TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF  262 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccc----------hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence            999999999999999999999999887764          8899999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV----LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                      +..++.+.....-+......++|.++++..++.++.+|..+.    .+..+..|+..-|++.+|+..+.++|.++|++..
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~  342 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ  342 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence            888888777777788889999999999999999999998544    3446788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ++..+|.+|.....|+.|+..|++|.+++++|..++.+|.
T Consensus       343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle  382 (504)
T KOG0624|consen  343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLE  382 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            9999999999999999999999999999999999988764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.6e-27  Score=233.19  Aligned_cols=319  Identities=20%  Similarity=0.248  Sum_probs=224.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      +..+...|+-++..|+|++||.+|.+||+++|+.+..|.+++.||...|+|++.++.+.++++++|++..++++.+..+.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            55788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHH------------------h------------CCC-C---Cchh-----------------------
Q 040048          344 RLGEVEKAIYHFKH------------------A------------GPE-A---DQVD-----------------------  366 (608)
Q Consensus       344 ~~g~~~~A~~~~~~------------------a------------l~~-~---~p~~-----------------------  366 (608)
                      .+|++.+|+....-                  .            +.. .   -|..                       
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            99999998754321                  0            000 0   0000                       


Q ss_pred             ---H------------------------------------------HHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHH
Q 040048          367 ---I------------------------------------------AKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIA  401 (608)
Q Consensus       367 ---~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  401 (608)
                         .                                          .......++...|..+.-.|+...|...++++|.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence               0                                          0011133444455556666888888888888888


Q ss_pred             cCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          402 GGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ  481 (608)
Q Consensus       402 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (608)
                      ++|... ..|+.++.+|....+.++-...|.++..++|.+          +.+|+.+|.+++-++++++|+..|++++.+
T Consensus       355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n----------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L  423 (606)
T KOG0547|consen  355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN----------PDVYYHRGQMRFLLQQYEEAIADFQKAISL  423 (606)
T ss_pred             cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC----------CchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            888763 458888888888888888888888888888875          778888888888888888888888888888


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          482 DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       482 ~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                      +|++.-.+.            .++.+.+++++++++...|+.++...|..++++...|.++..+++|++|++.|++|+++
T Consensus       424 ~pe~~~~~i------------Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  424 DPENAYAYI------------QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             ChhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            888876654            45555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          562 RPG------YSKARLRRADCFA-KIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       562 ~p~------~~~a~~~la~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      .|.      ++..+.+.|.+.. -.+++..|+..+++|++++|....++..
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~t  542 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYET  542 (606)
T ss_pred             ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence            544      2222222222211 1244444555555555555544444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=4.4e-25  Score=249.21  Aligned_cols=344  Identities=14%  Similarity=0.061  Sum_probs=279.4

Q ss_pred             hHHHHhh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040048          252 TSLCRAL--STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP  329 (608)
Q Consensus       252 ~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  329 (608)
                      ..+++..  ..|.+++++..+|.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++++++.|
T Consensus        69 ~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P  147 (765)
T PRK10049         69 LTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP  147 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4444443  23778999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh--------------------------H---HH-H---------
Q 040048          330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD--------------------------I---AK-A---------  370 (608)
Q Consensus       330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~--------------------------~---~~-~---------  370 (608)
                      ++..++..++.++...|..++|+..++++..  .|+.                          .   .. .         
T Consensus       148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~  225 (765)
T PRK10049        148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL  225 (765)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999988888876543  1111                          0   00 0         


Q ss_pred             ---------HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048          371 ---------KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE  441 (608)
Q Consensus       371 ---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  441 (608)
                               ....+.+.....+...+++++|+..|++++...+.........+|.+|...|++++|+..|++++...|..
T Consensus       226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~  305 (765)
T PRK10049        226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI  305 (765)
T ss_pred             cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence                     00111111122345678999999999999988654444455557999999999999999999999877653


Q ss_pred             cccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHHHHcCCHHHHH
Q 040048          442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA---KGVAAARSNGNALFKQAKFSEAA  518 (608)
Q Consensus       442 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~---~~~~~~~~lg~~~~~~g~~~eA~  518 (608)
                      ..      ........++.++...|++++|+..++++....|.....+......   .....+..+|.++...|++++|+
T Consensus       306 ~~------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~  379 (765)
T PRK10049        306 AD------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE  379 (765)
T ss_pred             CC------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence            11      0135667778888999999999999999999887532211000000   00122347899999999999999


Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       519 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      ..+++++...|.+..++..+|.++...|++++|++.+++++.++|++..+++.+|.++...|++++|+..++++++..|+
T Consensus       380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHH
Q 040048          599 DEEVDQ  604 (608)
Q Consensus       599 ~~~~~~  604 (608)
                      ++.+..
T Consensus       460 ~~~~~~  465 (765)
T PRK10049        460 DPGVQR  465 (765)
T ss_pred             CHHHHH
Confidence            998764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=8.8e-26  Score=231.43  Aligned_cols=309  Identities=17%  Similarity=0.139  Sum_probs=273.5

Q ss_pred             HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          265 ETLKIMGNEDY--KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       265 ~~~~~lg~~~~--~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      +.+..+|..+.  .+-+..+|+..|.+.-...++-..++..+|.+|+.+++|++|..+|+.+-++.|-..+..-.+..++
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L  397 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            44555555554  4566789999999977778888888999999999999999999999999999998777766677777


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH  422 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g  422 (608)
                      +.+.+--+--...+..+. .+|+.      .+.|-..|.++.-+++++.|++.+++++.++|.+ ..+|.++|.-+....
T Consensus       398 WHLq~~v~Ls~Laq~Li~-~~~~s------PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-aYayTLlGhE~~~~e  469 (638)
T KOG1126|consen  398 WHLQDEVALSYLAQDLID-TDPNS------PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-AYAYTLLGHESIATE  469 (638)
T ss_pred             HHHHhhHHHHHHHHHHHh-hCCCC------cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-chhhhhcCChhhhhH
Confidence            777654333333444555 77776      6788888999999999999999999999999987 478999999999999


Q ss_pred             ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048          423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR  502 (608)
Q Consensus       423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  502 (608)
                      ++|.|..+|+.++..+|.+          ..+|+.+|.+|.++++++.|.-+|++|++++|.+.....            
T Consensus       470 e~d~a~~~fr~Al~~~~rh----------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~------------  527 (638)
T KOG1126|consen  470 EFDKAMKSFRKALGVDPRH----------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC------------  527 (638)
T ss_pred             HHHhHHHHHHhhhcCCchh----------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh------------
Confidence            9999999999999999985          889999999999999999999999999999999988876            


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW  582 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~  582 (608)
                      .+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++..++++++|+..+++.-++.|+...+++.+|.+|.++|+.
T Consensus       528 ~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  528 HIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             hhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 040048          583 EASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       583 ~~A~~~~~~al~l~P~~~~~~  603 (608)
                      +.|+..|--|++++|.-.++.
T Consensus       608 ~~Al~~f~~A~~ldpkg~~i~  628 (638)
T KOG1126|consen  608 DLALLHFSWALDLDPKGAQIQ  628 (638)
T ss_pred             hHHHHhhHHHhcCCCccchhh
Confidence            999999999999999866543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.8e-25  Score=221.59  Aligned_cols=335  Identities=22%  Similarity=0.353  Sum_probs=263.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      -+...|+..+..|+|+.|+.+|..+|.++|.+...|.++..+|..+|+|++|+..-.+.++++|+.+.+|..+|..+..+
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCchhHHHHHH-----------------------------------------------------
Q 040048          346 GEVEKAIYHFKHAGPEADQVDIAKAKS-----------------------------------------------------  372 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~~~~~~~~-----------------------------------------------------  372 (608)
                      |+|++|+..|.+.|+ .+|++......                                                     
T Consensus        84 g~~~eA~~ay~~GL~-~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l  162 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLE-KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL  162 (539)
T ss_pred             ccHHHHHHHHHHHhh-cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence            999999999999998 88776321110                                                     


Q ss_pred             -------------------------------------------------------------HHHHHHHhHHHHHhhcHHH
Q 040048          373 -------------------------------------------------------------LQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       373 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~  391 (608)
                                                                                   ......+|.......++..
T Consensus       163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~  242 (539)
T KOG0548|consen  163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET  242 (539)
T ss_pred             hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence                                                                         0111122333344456666


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHH
Q 040048          392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDA  471 (608)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (608)
                      ++..|..+++++  .....+...+-+|+..|.+.+.+.....+++...+....+.   -.+..+..+|..|...++++.|
T Consensus       243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k---lIak~~~r~g~a~~k~~~~~~a  317 (539)
T KOG0548|consen  243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK---LIAKALARLGNAYTKREDYEGA  317 (539)
T ss_pred             HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH---HHHHHHHHhhhhhhhHHhHHHH
Confidence            677777777666  22355666677777777777766666655544322111000   0144555677788899999999


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 040048          472 LAAIQKAAKQDSNNKEVNMVMRKA---------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLC  536 (608)
Q Consensus       472 ~~~~~~al~~~p~~~~~~~~l~~~---------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  536 (608)
                      +.+|++++..... ++....+...               ..+......|..++..|+|..|+..|.++|..+|+++.+|.
T Consensus       318 i~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs  396 (539)
T KOG0548|consen  318 IKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS  396 (539)
T ss_pred             HHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence            9999999986655 2222211111               11344567799999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ++|.||.++|.+..|+..++++++++|++..+|++.|.++..+.+|++|.+.|+++++++|++.++...+.
T Consensus       397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~  467 (539)
T KOG0548|consen  397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR  467 (539)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999887654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=3.8e-24  Score=241.60  Aligned_cols=332  Identities=12%  Similarity=0.075  Sum_probs=268.0

Q ss_pred             chhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048          250 EPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI  327 (608)
Q Consensus       250 ~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  327 (608)
                      ++...+....  .+..+.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++.
T Consensus        33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~  112 (765)
T PRK10049         33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG  112 (765)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3445555543  46778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHh---------------------
Q 040048          328 EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRT---------------------  386 (608)
Q Consensus       328 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~---------------------  386 (608)
                      .|++.. +..+|.++...|++++|+..|++++. ..|++......      ++..+...                     
T Consensus       113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-~~P~~~~~~~~------la~~l~~~~~~e~Al~~l~~~~~~p~~~~  184 (765)
T PRK10049        113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALP-RAPQTQQYPTE------YVQALRNNRLSAPALGAIDDANLTPAEKR  184 (765)
T ss_pred             CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHH------HHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence            999999 99999999999999999999999999 99988543222      22221111                     


Q ss_pred             ----------------------hcH---HHHHHHHHHHHHc---CCCChHH---HHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048          387 ----------------------RDW---NTLIQETRAAIAG---GADSAPQ---IYALQAEALLKLHKHQEADETLKNGP  435 (608)
Q Consensus       387 ----------------------~~~---~~A~~~~~~al~~---~~~~~~~---~~~~la~~~~~~g~~~eA~~~l~~al  435 (608)
                                            +.+   ++|+..++.++..   +|+..+.   +.......+...|++++|+..|++++
T Consensus       185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll  264 (765)
T PRK10049        185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK  264 (765)
T ss_pred             HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence                                  123   5677777777754   3333221   22221234567899999999999999


Q ss_pred             CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048          436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS  515 (608)
Q Consensus       436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~  515 (608)
                      +..+...         ..+...+|.+|+..|++++|+.+|++++..+|.+.....        .....++.++...|+++
T Consensus       265 ~~~~~~P---------~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~--------~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        265 AEGQIIP---------PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD--------EELADLFYSLLESENYP  327 (765)
T ss_pred             ccCCCCC---------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh--------HHHHHHHHHHHhcccHH
Confidence            8754321         234444699999999999999999999998877621100        01126777889999999


Q ss_pred             HHHHHHHHhhcCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          516 EAAAAYGDGLGLDPY---------------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       516 eA~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      +|+..++++....|.               ...++..+|.++...|++++|++.+++++...|++..+++.+|.++...|
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g  407 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG  407 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            999999999988762               24577889999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          581 KWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       581 ~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ++++|++.++++++++|++..++..+
T Consensus       408 ~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        408 WPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            99999999999999999997765543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=2.7e-24  Score=226.07  Aligned_cols=303  Identities=16%  Similarity=0.078  Sum_probs=261.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRL  338 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~l  338 (608)
                      .....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345677789999999999999999999999999999999999999999999999999999998854332    3578899


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh----HHHHHHH
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA----PQIYALQ  414 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~l  414 (608)
                      |.+|...|++++|+..|++++. ..|.+      ...+..++.++...|++++|+..+++++...|...    ...+..+
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~-~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVD-EGDFA------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL  186 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHc-CCcch------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9999999999999999999988 66655      56778889999999999999999999998877642    2356678


Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK  494 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  494 (608)
                      |.++...|++++|+..|+++++..|+.          ..++..+|.++...|++++|+..|++++..+|.+....     
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----  251 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQC----------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV-----  251 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH-----
Confidence            999999999999999999999988874          77889999999999999999999999999888753321     


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048          495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD  574 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~  574 (608)
                            +..++.++...|++++|+..+++++...|+... +..+|.++...|++++|+..|+++++..|++......++.
T Consensus       252 ------~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~  324 (389)
T PRK11788        252 ------LPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY  324 (389)
T ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence                  237889999999999999999999999998754 4889999999999999999999999999998766545544


Q ss_pred             HHHH--cCCHHHHHHHHHHHHH
Q 040048          575 CFAK--IEKWEASMQDYEILKK  594 (608)
Q Consensus       575 ~~~~--~g~~~~A~~~~~~al~  594 (608)
                      .+..  .|+.++|+..+++.++
T Consensus       325 ~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        325 HLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             hhhccCCccchhHHHHHHHHHH
Confidence            4422  4588888888887764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.1e-25  Score=216.62  Aligned_cols=336  Identities=16%  Similarity=0.173  Sum_probs=286.9

Q ss_pred             ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK  297 (608)
Q Consensus       220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~  297 (608)
                      +.||=+.+.  |++|+.+|..++.+.+.                 .|-.|.+++-||...|+|++-++...++++++|+.
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~-----------------epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y  182 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPD-----------------EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY  182 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCC-----------------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH
Confidence            344433333  78888888766666543                 37788899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHH------------------HHHhh--------------------------------
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECR------------------EAIRI--------------------------------  327 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~------------------~al~~--------------------------------  327 (608)
                      ..+++.++.++..+|++.+|+....                  +.|..                                
T Consensus       183 ~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~  262 (606)
T KOG0547|consen  183 VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH  262 (606)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence            9999999999999999888775432                  11110                                


Q ss_pred             -CC-------------------------------------------------CC---------HHHHHHHHHHHHHcCCH
Q 040048          328 -EP-------------------------------------------------HY---------HRAHHRLANLYLRLGEV  348 (608)
Q Consensus       328 -~p-------------------------------------------------~~---------~~~~~~la~~~~~~g~~  348 (608)
                       +|                                                 .+         +.++...|..++..|++
T Consensus       263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~  342 (606)
T KOG0547|consen  263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS  342 (606)
T ss_pred             ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence             00                                                 00         23455667777788999


Q ss_pred             HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH
Q 040048          349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD  428 (608)
Q Consensus       349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~  428 (608)
                      ..|...|..+|. ++|..      ...|+.++..|....+-.+....|.++..++|.+ +.+|+.+|.+++-++++++|+
T Consensus       343 ~~a~~d~~~~I~-l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n-~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  343 LGAQEDFDAAIK-LDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN-PDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hhhhhhHHHHHh-cCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-CchhHhHHHHHHHHHHHHHHH
Confidence            999999999999 88887      4458899999999999999999999999999998 578999999999999999999


Q ss_pred             HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048          429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL  508 (608)
Q Consensus       429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~  508 (608)
                      ..|++++.++|++          +..+..++.+.++++++++++..|+++.+..|+.++++.            ..|.++
T Consensus       415 aDF~Kai~L~pe~----------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~------------~fAeiL  472 (606)
T KOG0547|consen  415 ADFQKAISLDPEN----------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN------------LFAEIL  472 (606)
T ss_pred             HHHHHHhhcChhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH------------HHHHHH
Confidence            9999999999985          889999999999999999999999999999999999987            779999


Q ss_pred             HHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          509 FKQAKFSEAAAAYGDGLGLDPY------NSVLLCNRAACRSK-LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       509 ~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      ..+++|++|++.|.+++++.|.      ++..+.+.|.+..+ .+++..|+..+++|++++|....++..||.+..++|+
T Consensus       473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~  552 (606)
T KOG0547|consen  473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK  552 (606)
T ss_pred             hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998      66666666655443 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHH
Q 040048          582 WEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       582 ~~~A~~~~~~al~l~P~~~~~  602 (608)
                      .++|+++|+++..+.-.-.+.
T Consensus       553 i~eAielFEksa~lArt~~E~  573 (606)
T KOG0547|consen  553 IDEAIELFEKSAQLARTESEM  573 (606)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH
Confidence            999999999999876554443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=1.8e-23  Score=236.45  Aligned_cols=311  Identities=13%  Similarity=0.061  Sum_probs=263.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCC------------------------
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGR------------------------  313 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~------------------------  313 (608)
                      |.+++.+..++......|++++|..+|++++...++.   ......++.+|...+.                        
T Consensus       373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  452 (987)
T PRK09782        373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS  452 (987)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence            6799999999999999999999999999999863332   2234477777766544                        


Q ss_pred             -H---HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh
Q 040048          314 -L---LEAVFECREAIRIEPH--YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR  387 (608)
Q Consensus       314 -~---~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~  387 (608)
                       +   ..+...+.+++...|.  ++.+|+.+|.++.. +++++|+..|.+++. ..|++.       ..+.++..+...|
T Consensus       453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~-~~Pd~~-------~~L~lA~al~~~G  523 (987)
T PRK09782        453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ-RQPDAW-------QHRAVAYQAYQVE  523 (987)
T ss_pred             hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH-hCCchH-------HHHHHHHHHHHCC
Confidence             2   2234455566666777  89999999999987 899999999999988 777642       3666677778899


Q ss_pred             cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048          388 DWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR  467 (608)
Q Consensus       388 ~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~  467 (608)
                      ++++|+..+++++...|..  ..+..+|.++...|++++|+.+|+++++..|+.          ...+..++......|+
T Consensus       524 r~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~----------~~l~~~La~~l~~~Gr  591 (987)
T PRK09782        524 DYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD----------NALYWWLHAQRYIPGQ  591 (987)
T ss_pred             CHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHhCCC
Confidence            9999999999988775554  346788999999999999999999999988874          5556666666677799


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048          468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ  547 (608)
Q Consensus       468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  547 (608)
                      +++|+..|+++++.+|+ ...+.            .+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|+
T Consensus       592 ~~eAl~~~~~AL~l~P~-~~a~~------------~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~  658 (987)
T PRK09782        592 PELALNDLTRSLNIAPS-ANAYV------------ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD  658 (987)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            99999999999999996 66554            899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          548 FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       548 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      +++|+..|++++++.|+++.+++++|.++..+|++++|+.+|+++++++|++..+...
T Consensus       659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~  716 (987)
T PRK09782        659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL  716 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhh
Confidence            9999999999999999999999999999999999999999999999999999877643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=1.1e-23  Score=238.27  Aligned_cols=286  Identities=12%  Similarity=0.051  Sum_probs=257.5

Q ss_pred             HHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048          281 AEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA  358 (608)
Q Consensus       281 ~~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  358 (608)
                      ..+...+.+++...|.  ++.+|+.+|.|+.. +++.+|+..+.+++...|++. .+..+|.++...|++++|+..|+++
T Consensus       458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka  535 (987)
T PRK09782        458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKI  535 (987)
T ss_pred             hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455666677777788  89999999999987 899999999999999999864 4667788888999999999999998


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCC
Q 040048          359 GPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFD  438 (608)
Q Consensus       359 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  438 (608)
                      +. ..|.+       ..++.++..+...|+++.|+..+++++...|+.. ..+..++..+...|++++|+..|+++++.+
T Consensus       536 ~~-~~p~~-------~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~-~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~  606 (987)
T PRK09782        536 SL-HDMSN-------EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN-ALYWWLHAQRYIPGQPELALNDLTRSLNIA  606 (987)
T ss_pred             hc-cCCCc-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence            76 55544       2356778899999999999999999999988773 455556666667799999999999999999


Q ss_pred             CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 040048          439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAA  518 (608)
Q Consensus       439 p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~  518 (608)
                      |+           ..++..+|.++...|++++|+..|++++.++|++..++.            .+|.++...|++++|+
T Consensus       607 P~-----------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~------------nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        607 PS-----------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA------------ALGYALWDSGDIAQSR  663 (987)
T ss_pred             CC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHH
Confidence            95           788999999999999999999999999999999998876            8999999999999999


Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       519 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      ..|+++++.+|+++.+++++|.++..+|++++|+.+|++++++.|+...+....|.+.....+++.|.+.|.++..++|+
T Consensus       664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CH
Q 040048          599 DE  600 (608)
Q Consensus       599 ~~  600 (608)
                      ..
T Consensus       744 ~~  745 (987)
T PRK09782        744 SS  745 (987)
T ss_pred             ch
Confidence            65

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.9e-24  Score=219.38  Aligned_cols=276  Identities=17%  Similarity=0.173  Sum_probs=260.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .-...+..+|..|+..++|++|..+|+.+-+..|-.....-.+..+++.+.+--+--...+..+..+|+.++.|..+|+|
T Consensus       351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNc  430 (638)
T KOG1126|consen  351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNC  430 (638)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence            44578889999999999999999999999999999888888888889988887776777788889999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |..+++++.|+++|++++. ++|..      ..+|..+|..+....+++.|...|++++..+|.+ -.+|+-+|.+|.++
T Consensus       431 fSLQkdh~~Aik~f~RAiQ-ldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-YnAwYGlG~vy~Kq  502 (638)
T KOG1126|consen  431 FSLQKDHDTAIKCFKRAIQ-LDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-YNAWYGLGTVYLKQ  502 (638)
T ss_pred             hhhhhHHHHHHHHHHHhhc-cCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-hHHHHhhhhheecc
Confidence            9999999999999999999 99988      7899999999999999999999999999999988 47899999999999


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      ++++.|+-.|++|++++|.+          ..+...+|.++.+.|+.++|+.+|++|+.++|.++-..+           
T Consensus       503 ek~e~Ae~~fqkA~~INP~n----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~-----------  561 (638)
T KOG1126|consen  503 EKLEFAEFHFQKAVEINPSN----------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY-----------  561 (638)
T ss_pred             chhhHHHHHHHhhhcCCccc----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH-----------
Confidence            99999999999999999985          888999999999999999999999999999999998876           


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                       ..|.+++..+++++|+..+++.-++-|++..+++.+|.+|.++|+.+.|+..|.-|+.++|.-..
T Consensus       562 -~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  562 -HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             -HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence             89999999999999999999999999999999999999999999999999999999999998554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=6.6e-23  Score=215.48  Aligned_cols=284  Identities=20%  Similarity=0.132  Sum_probs=248.7

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL  377 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~  377 (608)
                      ....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. ..+...  ......+.
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~--~~~~~~~~  111 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTR--EQRLLALQ  111 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCH--HHHHHHHH
Confidence            455677899999999999999999999999999999999999999999999999999999886 332221  12345778


Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~  457 (608)
                      .++..+...|++++|+..+.++++..|.. ..++..++.++...|++++|+..++++++..|......     ....+..
T Consensus       112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~~  185 (389)
T PRK11788        112 ELGQDYLKAGLLDRAEELFLQLVDEGDFA-EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-----IAHFYCE  185 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----HHHHHHH
Confidence            89999999999999999999999987765 57888999999999999999999999988776532110     1345678


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN-SVLLC  536 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~  536 (608)
                      +|.++...|++++|+..|+++++..|+....+.            .+|.++...|++++|+..|++++..+|.+ ..++.
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  253 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQCVRASI------------LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP  253 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence            999999999999999999999999998877665            88999999999999999999999988876 46788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      .++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..|+++++.+|++..+.
T Consensus       254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        254 KLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            9999999999999999999999999998754 48999999999999999999999999999988665

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.9e-22  Score=198.04  Aligned_cols=323  Identities=15%  Similarity=0.107  Sum_probs=272.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH-----------------------------HHHHc
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTA-----------------------------ALIAL  311 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~-----------------------------~~~~~  311 (608)
                      ..|+-.++..|.++...|....|+..|..++...|-+..+|..|+.                             ++...
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el  240 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL  240 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999999988888777655444                             34445


Q ss_pred             CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHH-HH---H--------
Q 040048          312 GRLLEAVFECREAIRI-EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA-HL---N--------  378 (608)
Q Consensus       312 g~~~eA~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~-~~---~--------  378 (608)
                      .+.++++.-++..+.. .|.....-...|.+.....++++|+..|+...+ .+|-.....+...- ++   .        
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k-nDPYRl~dmdlySN~LYv~~~~skLs~LA  319 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK-NDPYRLDDMDLYSNVLYVKNDKSKLSYLA  319 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-cCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence            5677888888887777 788888888999999999999999999999998 67765433222110 00   0        


Q ss_pred             ----------------HhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccc
Q 040048          379 ----------------KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET  442 (608)
Q Consensus       379 ----------------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~  442 (608)
                                      .|.-|.-.++.++|+.+|+++++++|... .+|.++|.-|..+++...|++.|+++++++|.| 
T Consensus       320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~-~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-  397 (559)
T KOG1155|consen  320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL-SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-  397 (559)
T ss_pred             HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh-HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-
Confidence                            12224556788999999999999999874 789999999999999999999999999999987 


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          443 TRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG  522 (608)
Q Consensus       443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~  522 (608)
                               ..+|+.+|+.|..++.+.=|+-+|++|++.-|.+...|.            .+|.+|.+.++.++|+++|.
T Consensus       398 ---------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~------------aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  398 ---------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV------------ALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             ---------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH------------HHHHHHHHhccHHHHHHHHH
Confidence                     788888999999999999999999999999999999987            88999999999999999999


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN-------VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       523 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +++.....+..++..||.+|.+++++.+|..+|++.++       ..|....+...||.-+.+.+++++|..+...++.-
T Consensus       457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            99999888889999999999999999999999999988       34556777888999999999999999999999888


Q ss_pred             CCCCHHHHHHhh
Q 040048          596 APDDEEVDQALQ  607 (608)
Q Consensus       596 ~P~~~~~~~~L~  607 (608)
                      ++.-.++...|+
T Consensus       537 ~~e~eeak~LlR  548 (559)
T KOG1155|consen  537 ETECEEAKALLR  548 (559)
T ss_pred             CchHHHHHHHHH
Confidence            887777766654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2.8e-24  Score=209.47  Aligned_cols=413  Identities=19%  Similarity=0.193  Sum_probs=325.0

Q ss_pred             chhhhhhhhhccccccCCCcceeccccchhhhcccccccCCCCCCCCCCCCCcccccccccccCccCCCCCCCCc-----
Q 040048          145 ISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNS-----  219 (608)
Q Consensus       145 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a-----  219 (608)
                      .+|.-++.+..|....|...|+...+.+.++|+ |+.....+   .+  +     .-|.+- ++.+..+.-|+++     
T Consensus       174 dagrker~lvk~req~~~~e~inldltfsvl~n-laqqy~~n---dm--~-----~ealnt-yeiivknkmf~nag~lkm  241 (840)
T KOG2003|consen  174 DAGRKERALVKHREQQGLPEMINLDLTFSVLFN-LAQQYEAN---DM--T-----AEALNT-YEIIVKNKMFPNAGILKM  241 (840)
T ss_pred             hcchhHHHHHHHHHhccchhhccccchHHHHHH-HHHHhhhh---HH--H-----HHHhhh-hhhhhcccccCCCceeee
Confidence            456667777788888888888877766665554 44433222   22  0     112222 3567778888887     


Q ss_pred             ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK  297 (608)
Q Consensus       220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~  297 (608)
                      ++|+|+.++  +..|..+|++++..-|.-.            ......++.++|..+.+.|.|+.|+..|+.+++..|+.
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsin------------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~  309 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN------------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF  309 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhccccc------------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH
Confidence            999999888  8899999999988876522            23445678888999999999999999999999999986


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCC--------------------------------
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECREAIRI--------------EPHY--------------------------------  331 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------------~p~~--------------------------------  331 (608)
                      .. -+++..|++..|+-++-.+.|.+.+.+              +|++                                
T Consensus       310 ~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~k  388 (840)
T KOG2003|consen  310 IA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAK  388 (840)
T ss_pred             Hh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            54 457778888888888888888888764              1111                                


Q ss_pred             ----------H--------------------HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHH-HHH---------
Q 040048          332 ----------H--------------------RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAK---------  371 (608)
Q Consensus       332 ----------~--------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~-~~~---------  371 (608)
                                +                    +.-...+.-|++.|+++.|++.++-.-. .+..... ...         
T Consensus       389 iiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flq  467 (840)
T KOG2003|consen  389 IIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQ  467 (840)
T ss_pred             HhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHh
Confidence                      0                    0012335678999999999988765433 2221110 000         


Q ss_pred             ---------------------HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048          372 ---------------------SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET  430 (608)
Q Consensus       372 ---------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~  430 (608)
                                           ...++.+.+.+....|++++|.+.|++++..+... .++++++|..+..+|+.++|+++
T Consensus       468 ggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~  546 (840)
T KOG2003|consen  468 GGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDC  546 (840)
T ss_pred             cccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHH
Confidence                                 01223344555566799999999999999877665 47888899999999999999999


Q ss_pred             hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048          431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK  510 (608)
Q Consensus       431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~  510 (608)
                      |-+.-.+-.+          ++++++.++.+|..+.+..+|++++.++..+-|+++.++.            .+|.+|-+
T Consensus       547 f~klh~il~n----------n~evl~qianiye~led~aqaie~~~q~~slip~dp~ils------------kl~dlydq  604 (840)
T KOG2003|consen  547 FLKLHAILLN----------NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS------------KLADLYDQ  604 (840)
T ss_pred             HHHHHHHHHh----------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH------------HHHHHhhc
Confidence            9876544333          4899999999999999999999999999999999999886            89999999


Q ss_pred             cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE  590 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~  590 (608)
                      .|+-.+|.+++-......|-+.+...+||..|....-+++|+.+|+++--+.|+.....+.++.|+.+.|+|.+|.+.|+
T Consensus       605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk  684 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK  684 (840)
T ss_pred             ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHh
Q 040048          591 ILKKEAPDDEEVDQAL  606 (608)
Q Consensus       591 ~al~l~P~~~~~~~~L  606 (608)
                      ...+..|.+.+..+.|
T Consensus       685 ~~hrkfpedldclkfl  700 (840)
T KOG2003|consen  685 DIHRKFPEDLDCLKFL  700 (840)
T ss_pred             HHHHhCccchHHHHHH
Confidence            9999999999987765

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.2e-23  Score=221.09  Aligned_cols=330  Identities=14%  Similarity=0.081  Sum_probs=284.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG---RLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      -++....+|.|+.+.|+.+.|+..|.++++++|.++.++..||.+-....   .+..++..+.++...++.+|.++..|+
T Consensus       198 ~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LA  277 (1018)
T KOG2002|consen  198 KADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLA  277 (1018)
T ss_pred             CCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            35566677888888888889999999999999988888888887766644   467788888888888999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048          340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL  419 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~  419 (608)
                      .-|+..|+|+.+......++. ..   .........++.+|..+..+|++++|..+|.+++..++++..-.++.+|..+.
T Consensus       278 n~fyfK~dy~~v~~la~~ai~-~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i  353 (1018)
T KOG2002|consen  278 NHFYFKKDYERVWHLAEHAIK-NT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI  353 (1018)
T ss_pred             HHHhhcccHHHHHHHHHHHHH-hh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence            999999999999998888875 22   23344567899999999999999999999999999999886677888999999


Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG----RFEDALAAIQKAAKQDSNNKEVNMVMRKA  495 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~  495 (608)
                      ..|+++.|+.+|++.++..|+.          .+....+|.+|...+    ..++|..++.++++..|.+.++|..+..+
T Consensus       354 ~~~dle~s~~~fEkv~k~~p~~----------~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql  423 (1018)
T KOG2002|consen  354 KRGDLEESKFCFEKVLKQLPNN----------YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL  423 (1018)
T ss_pred             HhchHHHHHHHHHHHHHhCcch----------HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            9999999999999999999985          888899999998876    67899999999999999999988877654


Q ss_pred             HH--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----CCCC-----HHHHHHHH
Q 040048          496 KG--------------------------VAAARSNGNALFKQAKFSEAAAAYGDGLGL-----DPYN-----SVLLCNRA  539 (608)
Q Consensus       496 ~~--------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~-----~~~~~~la  539 (608)
                      ..                          ++.++++|..++..|++.+|...|.+|+..     +++.     ...-+++|
T Consensus       424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla  503 (1018)
T KOG2002|consen  424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA  503 (1018)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence            21                          556789999999999999999999999876     2222     33589999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          540 ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .++..+++++.|.+.|..+++..|.+.++|.++|......++..+|...+..++..+..|++++..+
T Consensus       504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~  570 (1018)
T KOG2002|consen  504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL  570 (1018)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence            9999999999999999999999999999999999888888999999999999999999999998765

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.7e-23  Score=218.57  Aligned_cols=327  Identities=18%  Similarity=0.209  Sum_probs=206.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      .-++.+|.+|.++..+|+|++|..+|.+++..+|++ .-.++.+|.+|+..|+++.|+.+|+++++..|++.+....||.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            345667778888888888888888888888877777 5567777888888888888888888888888888777777887


Q ss_pred             HHHHcC----CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc----CCCChHHHHH
Q 040048          341 LYLRLG----EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG----GADSAPQIYA  412 (608)
Q Consensus       341 ~~~~~g----~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~  412 (608)
                      +|...+    ..++|..+..+++. ..|.+      ..+|+.++.++....-|.. +..|..++..    .....+++++
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~-~~~~d------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN  456 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLE-QTPVD------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN  456 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHh-ccccc------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence            777765    55677777777776 55555      3344444444333333332 4444443321    1113344444


Q ss_pred             HHHHHHHHcCChHHHHHHh--------------------------------------------hcCCCCCCcccccccCC
Q 040048          413 LQAEALLKLHKHQEADETL--------------------------------------------KNGPNFDVDETTRFFGP  448 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l--------------------------------------------~~al~~~p~~~~~~~~~  448 (608)
                      ++|..++.+|++.+|...|                                            ..+++..|.        
T Consensus       457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~--------  528 (1018)
T KOG2002|consen  457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG--------  528 (1018)
T ss_pred             hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch--------
Confidence            5555555555555555544                                            444444443        


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH------------------------HHHHHHHH
Q 040048          449 IGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK------------------------GVAAARSN  504 (608)
Q Consensus       449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~------------------------~~~~~~~l  504 (608)
                        ....+..+|.+....+...+|..++..++..+..++.++..++...                        .+-++..|
T Consensus       529 --YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL  606 (1018)
T KOG2002|consen  529 --YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL  606 (1018)
T ss_pred             --hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence              2555555555555556666666666666666666666665554210                        02234567


Q ss_pred             HHHHHH------------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048          505 GNALFK------------QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR  572 (608)
Q Consensus       505 g~~~~~------------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  572 (608)
                      |++++.            .+.+++|+++|.++|..+|.+..+-..+|.|+...|++.+|+..|.++.+-..++.++|.++
T Consensus       607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl  686 (1018)
T KOG2002|consen  607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL  686 (1018)
T ss_pred             hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence            776653            45678899999999999998877777777777777777777777777766655666677777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHh
Q 040048          573 ADCFAKIEKWEASMQDYEILKKEAP--DDEEVDQAL  606 (608)
Q Consensus       573 a~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~L  606 (608)
                      |.||..+|+|..|++.|+.+++..-  ++.++...|
T Consensus       687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L  722 (1018)
T KOG2002|consen  687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL  722 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            7777777777777777777766432  344444433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.6e-24  Score=206.73  Aligned_cols=307  Identities=29%  Similarity=0.425  Sum_probs=270.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      +++-....|..++...+|.+|+..|..||+++|+++..|.+.+.++...|+|++|+-.+++.++++|.....+...+.|+
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH  127 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHH
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS--APQIYALQAEALLK  420 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~la~~~~~  420 (608)
                      ..+++..+|...++..-    +                      .....++..+++.+......  -..+..+.+.++..
T Consensus       128 ~a~~~~i~A~~~~~~~~----~----------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~  181 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSKQ----A----------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF  181 (486)
T ss_pred             hhhHHHHHHHHHhhhhh----h----------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh
Confidence            99999999988876321    1                      01223334444444333221  13456667899999


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      .+++++|...--..+++++..          .++++..|.++...++.+.|+.+|++++.++|++.........++.++.
T Consensus       182 ~~~~~~a~~ea~~ilkld~~n----------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  182 LGDYDEAQSEAIDILKLDATN----------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             cccchhHHHHHHHHHhcccch----------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHH
Confidence            999999999999999998874          8999999999999999999999999999999999999888888889999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      +...|+-.++.|+|.+|.++|..+|.++|++    +.+|.++|.+...+|+..+|+..++.++.+++....++...|.|+
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~  331 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH  331 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999976    678999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          577 AKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       577 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ..+++|++|++.|+++++...+ .++++.|
T Consensus       332 l~le~~e~AV~d~~~a~q~~~s-~e~r~~l  360 (486)
T KOG0550|consen  332 LALEKWEEAVEDYEKAMQLEKD-CEIRRTL  360 (486)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence            9999999999999999998877 5554444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.92  E-value=3.2e-22  Score=211.14  Aligned_cols=320  Identities=18%  Similarity=0.209  Sum_probs=269.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      ....++..|+.++..|++++|..++.++|..+|.++.+|+.+|.+|..+|+.++++..+-.|-.++|.+.+.|..++...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            35678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHH
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA----PQIYALQAEAL  418 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~la~~~  418 (608)
                      ..+|++.+|.-+|.++++ .+|.+      ....+.++.++.++|+...|...+.+++...|...    ...-...+..+
T Consensus       218 ~~~~~i~qA~~cy~rAI~-~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~  290 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQ-ANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF  290 (895)
T ss_pred             HhcccHHHHHHHHHHHHh-cCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence            999999999999999999 99988      78888999999999999999999999999988432    23344457778


Q ss_pred             HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh----------
Q 040048          419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK--QDSNNK----------  486 (608)
Q Consensus       419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~----------  486 (608)
                      ...++.+.|++.++.++....+.    .    ....+..++.+++....++.|......-..  ..+++.          
T Consensus       291 ~~~~~~e~a~~~le~~~s~~~~~----~----~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~  362 (895)
T KOG2076|consen  291 ITHNERERAAKALEGALSKEKDE----A----SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE  362 (895)
T ss_pred             HHhhHHHHHHHHHHHHHhhcccc----c----cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence            88888899999999998833221    1    145566788999999999999887765544  111111          


Q ss_pred             ----------------HH-HHHHHH-----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048          487 ----------------EV-NMVMRK-----------------------AKGVAAARSNGNALFKQAKFSEAAAAYGDGLG  526 (608)
Q Consensus       487 ----------------~~-~~~l~~-----------------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~  526 (608)
                                      .+ ...+..                       ......+..++.++...|++.+|+.+|..+..
T Consensus       363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~  442 (895)
T KOG2076|consen  363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN  442 (895)
T ss_pred             cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence                            01 100000                       01255678999999999999999999999998


Q ss_pred             CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          527 LDP-YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       527 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      ..+ .+..+|+.+|.||..+|.+++|+++|++++.+.|++.++...|+.++.++|+.++|.+.++....-++
T Consensus       443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~  514 (895)
T KOG2076|consen  443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG  514 (895)
T ss_pred             CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence            866 44789999999999999999999999999999999999999999999999999999999998774443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.7e-21  Score=196.02  Aligned_cols=282  Identities=15%  Similarity=0.147  Sum_probs=239.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      ..+++.+...+..++..++|.+-.+.++..++.+|-+...+-..-.|+..+|+..+=...-.+.++..|+.+..|+..|.
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC  320 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence            35678888999999999999999999999999999988876665559999999999888888999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      .|...|++.+|..+|.++.. ++|..                                         ...|...|..+..
T Consensus       321 YYl~i~k~seARry~SKat~-lD~~f-----------------------------------------gpaWl~fghsfa~  358 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATT-LDPTF-----------------------------------------GPAWLAFGHSFAG  358 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhh-cCccc-----------------------------------------cHHHHHHhHHhhh
Confidence            99999999999999999988 88876                                         3567777888888


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      .+..++|+.+|..+-++.|..          ....+.+|.-|...++++.|..+|.+|+.+.|.++-+..          
T Consensus       359 e~EhdQAmaaY~tAarl~~G~----------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~----------  418 (611)
T KOG1173|consen  359 EGEHDQAMAAYFTAARLMPGC----------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH----------  418 (611)
T ss_pred             cchHHHHHHHHHHHHHhccCC----------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh----------
Confidence            888888888888887777654          455566888888889999999999999999998888776          


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLD----P---YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA  573 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la  573 (608)
                        .+|.+.+..+.|.+|..+|+.++..-    +   .-...+.+||.++.+++.+++|+.+|+++|.+.|.++.++..+|
T Consensus       419 --Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig  496 (611)
T KOG1173|consen  419 --ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG  496 (611)
T ss_pred             --hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence              78888888889999999998888431    1   12356788999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          574 DCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .+|..+|+++.|+++|.+++-+.|+|.-+...|
T Consensus       497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELL  529 (611)
T ss_pred             HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence            999999999999999999999999886665544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.89  E-value=1.2e-19  Score=201.61  Aligned_cols=342  Identities=15%  Similarity=0.071  Sum_probs=264.3

Q ss_pred             CcchhHHHHhhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          248 SAEPTSLCRALSTRMD--PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAI  325 (608)
Q Consensus       248 ~~~a~~~~~~~~~~~~--~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  325 (608)
                      ..+|...++....+.+  ...+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++
T Consensus        84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~  163 (822)
T PRK14574         84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA  163 (822)
T ss_pred             cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence            3345555555554433  44455557799999999999999999999999999999988999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHH---------------------------------
Q 040048          326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKS---------------------------------  372 (608)
Q Consensus       326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~---------------------------------  372 (608)
                      ..+|..... ..++.++...++..+|+..|++++. .+|++......                                 
T Consensus       164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~-~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l  241 (822)
T PRK14574        164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVR-LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL  241 (822)
T ss_pred             ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence            999985554 5566666667788779999999988 77776321100                                 


Q ss_pred             --------------------------------------------------HHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048          373 --------------------------------------------------LQAHLNKCTDAKRTRDWNTLIQETRAAIAG  402 (608)
Q Consensus       373 --------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  402 (608)
                                                                        ..+.......+...+++.+++..|+.+...
T Consensus       242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~  321 (822)
T PRK14574        242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE  321 (822)
T ss_pred             HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence                                                              001111112233345566666666665554


Q ss_pred             CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD  482 (608)
Q Consensus       403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (608)
                      .......+....|..|+..++.++|+.+|+.++...++.    +...........|...|+..+++++|..++++..+..
T Consensus       322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~----~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~  397 (822)
T PRK14574        322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT----FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT  397 (822)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc----cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            444445677788999999999999999999987765421    0000123445678888999999999999999998855


Q ss_pred             CC------------ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          483 SN------------NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK  550 (608)
Q Consensus       483 p~------------~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  550 (608)
                      |-            +++.         .+....++.++...|++.+|++.+++.+...|.+..++..+|.++...|.+.+
T Consensus       398 p~~~~~~~~~~~~pn~d~---------~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~  468 (822)
T PRK14574        398 PYQVGVYGLPGKEPNDDW---------IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK  468 (822)
T ss_pred             CcEEeccCCCCCCCCccH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            51            1111         12335788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       551 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      |+..++.++.++|++..+...+|.++..+|++.+|....+++++..|+++.+.+
T Consensus       469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~  522 (822)
T PRK14574        469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE  522 (822)
T ss_pred             HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence            999999999999999999999999999999999999999999999999998765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.88  E-value=5.4e-23  Score=205.61  Aligned_cols=265  Identities=20%  Similarity=0.222  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISI--DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      .+.+|.+++..|++++|++++++.+..  .|+++.+|..+|.+...++++++|+..|++++..++..+..+..++.+ ..
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            346799999999999999999766544  488899999999999999999999999999999998888888888888 78


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH  424 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~  424 (608)
                      .+++++|+..++++.+ ..++                                          +..+.....++...+++
T Consensus        90 ~~~~~~A~~~~~~~~~-~~~~------------------------------------------~~~l~~~l~~~~~~~~~  126 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYE-RDGD------------------------------------------PRYLLSALQLYYRLGDY  126 (280)
T ss_dssp             -----------------------------------------------------------------------H-HHHTT-H
T ss_pred             cccccccccccccccc-cccc------------------------------------------cchhhHHHHHHHHHhHH
Confidence            8999999998887765 2221                                          23334445556666777


Q ss_pred             HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048          425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN  504 (608)
Q Consensus       425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l  504 (608)
                      +++...++++....+..        .++..|..+|.++...|++++|+..|+++++.+|++..+..            .+
T Consensus       127 ~~~~~~l~~~~~~~~~~--------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------------~l  186 (280)
T PF13429_consen  127 DEAEELLEKLEELPAAP--------DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------------AL  186 (280)
T ss_dssp             HHHHHHHHHHHH-T-----------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------------HH
T ss_pred             HHHHHHHHHHHhccCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------HH
Confidence            77777666644322100        13888999999999999999999999999999999999876            78


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA  584 (608)
Q Consensus       505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~  584 (608)
                      +.++...|+++++...+.......|.++.++..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++
T Consensus       187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~  266 (280)
T PF13429_consen  187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE  266 (280)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999988888888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 040048          585 SMQDYEILKKE  595 (608)
Q Consensus       585 A~~~~~~al~l  595 (608)
                      |..+++++++.
T Consensus       267 A~~~~~~~~~~  277 (280)
T PF13429_consen  267 ALRLRRQALRL  277 (280)
T ss_dssp             -----------
T ss_pred             ccccccccccc
Confidence            99999998764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.5e-20  Score=184.89  Aligned_cols=272  Identities=16%  Similarity=0.138  Sum_probs=230.5

Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-----------------------------HHHcC
Q 040048          296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL-----------------------------YLRLG  346 (608)
Q Consensus       296 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-----------------------------~~~~g  346 (608)
                      .++..++..|.++...|....|+..|..++...|-+-.+|..|+.+                             +..+.
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~  241 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH  241 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999888877777666543                             33333


Q ss_pred             CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh-------------------
Q 040048          347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA-------------------  407 (608)
Q Consensus       347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------  407 (608)
                      +.++++.-++......-|..      ...-...+.+.....|+++|+..|+.+...+|-..                   
T Consensus       242 q~~e~~~k~e~l~~~gf~~~------~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL  315 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNS------MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL  315 (559)
T ss_pred             HHHHHHHHHHHHHhccCCcc------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence            44455544444443112222      23334556677888999999999999999877321                   


Q ss_pred             --------------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048          408 --------------PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA  473 (608)
Q Consensus       408 --------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (608)
                                    ++....+|..|...+++++|+.+|+++++++|..          ..+|..+|.-|+.+++...|++
T Consensus       316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~----------~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY----------LSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch----------hHHHHHhhHHHHHhcccHHHHH
Confidence                          2223345777888899999999999999999985          8999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          474 AIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE  553 (608)
Q Consensus       474 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  553 (608)
                      .|++|++++|.+..+|.            .+|.+|.-++...=|+-+|++|+...|.+...|..||.||.++++.++|++
T Consensus       386 sYRrAvdi~p~DyRAWY------------GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  386 SYRRAVDINPRDYRAWY------------GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HHHHHHhcCchhHHHHh------------hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999987            999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          554 DCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       554 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +|.+++........++..||.+|.++++..+|..+|++.++.
T Consensus       454 Cykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  454 CYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999888999999999999999999999999999983

>TIGR00540 hemY_coli hemY protein

Probab=99.88  E-value=1.2e-19  Score=190.71  Aligned_cols=308  Identities=12%  Similarity=0.014  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH-RAHHRLANLY  342 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~  342 (608)
                      .......|...+..|+++.|...+.++.+..|+....+...|.++..+|++++|..++.++.+..|+.. .+....+.++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            445577888999999999999999999999999888888999999999999999999999999999875 5666679999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH---HHHHHHH
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA---LQAEALL  419 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~la~~~~  419 (608)
                      ...|++++|+..++++++ ..|++      ..++..++..+...|+|+.++..+.+..+...........   .....+.
T Consensus       164 l~~~~~~~Al~~l~~l~~-~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLE-MAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             HHCCCHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999 88988      5778888999999999999999999999875554333322   2222224


Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA  499 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  499 (608)
                      ..+..+++...+..+....|+...      .+..++..++..+...|++++|+..++++++..|++.......       
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~------~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~-------  303 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRR------HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL-------  303 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHh------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH-------
Confidence            444455555566666665553100      1389999999999999999999999999999999987532100       


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS--VLLCNRAACRSKLGQFEKAIEDCN--AALNVRPGYSKARLRRADC  575 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~la~~  575 (608)
                         .........++.+.+++.++++++..|+++  .++..+|.++++.|++++|.++|+  .+++..|+... +..+|.+
T Consensus       304 ---l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~l  379 (409)
T TIGR00540       304 ---CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADA  379 (409)
T ss_pred             ---HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHH
Confidence               233444556889999999999999999999  889999999999999999999999  68888887765 5699999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh
Q 040048          576 FAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       576 ~~~~g~~~~A~~~~~~al~l  595 (608)
                      +.++|+.++|.++|++++..
T Consensus       380 l~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       380 FDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.87  E-value=4.3e-20  Score=201.34  Aligned_cols=268  Identities=13%  Similarity=0.057  Sum_probs=215.4

Q ss_pred             CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 040048          263 DPETLKIMGNEDYKA---GNFAEALALYDAAISIDPNKASYRSNKTAALIAL---------GRLLEAVFECREAIRIEPH  330 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~~~~al~~~p~  330 (608)
                      ++..++..|..++..   +++++|+.+|+++++++|+++.+|..+|.++...         +++++|+..++++++++|+
T Consensus       257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~  336 (553)
T PRK12370        257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN  336 (553)
T ss_pred             HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence            344566677655443   4578999999999999999999999999887744         3478999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048          331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI  410 (608)
Q Consensus       331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  410 (608)
                      ++.++..+|.++...|++++|+..|++++. ++|++                                         +.+
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P~~-----------------------------------------~~a  374 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANL-LSPIS-----------------------------------------ADI  374 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC-----------------------------------------HHH
Confidence            999999999999999999999999999988 77777                                         456


Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD-SNNKEVN  489 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  489 (608)
                      +..+|.++...|++++|+..++++++++|.+          ...+..++.+++..|++++|+..+++++... |+++..+
T Consensus       375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~----------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~  444 (553)
T PRK12370        375 KYYYGWNLFMAGQLEEALQTINECLKLDPTR----------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL  444 (553)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence            7777888888888888888888888888874          4445556667778899999999999998875 6676665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048          490 MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       490 ~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  569 (608)
                      .            .+|.++...|++++|+..+.++....|....++..++..|...|  ++|...+++.++..-....-.
T Consensus       445 ~------------~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~  510 (553)
T PRK12370        445 S------------MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNP  510 (553)
T ss_pred             H------------HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCc
Confidence            4            78999999999999999999998888888888889999988888  477777777666443333233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          570 LRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      ..++.+|.-.|+.+.+..+ +++.+.+.
T Consensus       511 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        511 GLLPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             hHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence            3478888888888888776 76665543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.87  E-value=5.2e-19  Score=196.59  Aligned_cols=359  Identities=11%  Similarity=0.005  Sum_probs=265.4

Q ss_pred             CCCcccccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 040048          229 NDHPQNHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTA  306 (608)
Q Consensus       229 ~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~  306 (608)
                      +..+...|..++.....+....|...++.++.  |.++.....+..++...|++++|+.++++++.-.|.....+..+|.
T Consensus        31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~  110 (822)
T PRK14574         31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR  110 (822)
T ss_pred             ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence            44555667777777777777788888877754  5554344478888888899999999999998333333444444477


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHh
Q 040048          307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRT  386 (608)
Q Consensus       307 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~  386 (608)
                      ++..+|++++|++.|+++++.+|+++.++..++.+|...++.++|+..+++++. .+|...       .+..++.++...
T Consensus       111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-~dp~~~-------~~l~layL~~~~  182 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE-RDPTVQ-------NYMTLSYLNRAT  182 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-cCcchH-------HHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999988 787742       123345555556


Q ss_pred             hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC-------------------------------
Q 040048          387 RDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP-------------------------------  435 (608)
Q Consensus       387 ~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al-------------------------------  435 (608)
                      ++..+|+..++++++.+|++. .++..+..++...|-...|.+...+-.                               
T Consensus       183 ~~~~~AL~~~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~  261 (822)
T PRK14574        183 DRNYDALQASSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET  261 (822)
T ss_pred             chHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence            777779999999999999884 555555566665555544444443322                               


Q ss_pred             -----------------C---CCCcccccccC-----------------------------CCCcHHHHHHHHHHHHHcC
Q 040048          436 -----------------N---FDVDETTRFFG-----------------------------PIGNANLLVVRAQVNLACG  466 (608)
Q Consensus       436 -----------------~---~~p~~~~~~~~-----------------------------~~~~~~~~~~la~~~~~~g  466 (608)
                                       .   ..|.....+..                             ..--..+....|..|+..+
T Consensus       262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~  341 (822)
T PRK14574        262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR  341 (822)
T ss_pred             hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence                             2   11211000000                             0001345556667777777


Q ss_pred             CHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-------------
Q 040048          467 RFEDALAAIQKAAKQDSN----NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP-------------  529 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-------------  529 (608)
                      ++++|+.+|+.++.-.+.    ..+..          ....|..++...+++++|..++++..+..|             
T Consensus       342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~----------~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p  411 (822)
T PRK14574        342 LPEKAAPILSSLYYSDGKTFRNSDDLL----------DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP  411 (822)
T ss_pred             CcHHHHHHHHHHhhccccccCCCcchH----------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence            777777777777665431    11111          113677889999999999999999987433             


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          530 --YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       530 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                        +...+...++.++...|++.+|++.+++.+...|.+...+..+|.++...|.+.+|+..++.+..++|++..+...+
T Consensus       412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~  490 (822)
T PRK14574        412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ  490 (822)
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence              33567888999999999999999999999999999999999999999999999999999999999999998877654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.87  E-value=2.8e-20  Score=176.22  Aligned_cols=296  Identities=16%  Similarity=0.176  Sum_probs=249.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHH--
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH---RAH--  335 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~--  335 (608)
                      |.+-.+++..|.+|+..|+-.-|+..+.++|++.|+...+...+|.+++.+|.+++|+..|+.++..+|.+.   ++.  
T Consensus        69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk  148 (504)
T KOG0624|consen   69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK  148 (504)
T ss_pred             chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence            455568899999999999999999999999999999999999999999999999999999999999999652   222  


Q ss_pred             ----------HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048          336 ----------HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD  405 (608)
Q Consensus       336 ----------~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  405 (608)
                                ......++..|++..|++....+++ +.|-+      +..+..++.+|...|+...||..++.+-++..+
T Consensus       149 l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-i~~Wd------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D  221 (504)
T KOG0624|consen  149 LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-IQPWD------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD  221 (504)
T ss_pred             HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-cCcch------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence                      2233445567999999999999998 88876      677888999999999999999999999988777


Q ss_pred             ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccc--cccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETT--RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                      +. +.++.++.+++..|+.+.++...+++++++|+...  .++.......-.+.-+......++|.++++..++.++.+|
T Consensus       222 nT-e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep  300 (504)
T KOG0624|consen  222 NT-EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP  300 (504)
T ss_pred             ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            74 78888999999999999999999999999998532  2221111122223334456678999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048          484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP  563 (608)
Q Consensus       484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  563 (608)
                      ....+...        .+..+..|+...+++.+|++.+.+++.++|++..+++..|.+|+....|+.|+..|++|.+.++
T Consensus       301 ~~~~ir~~--------~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  301 EETMIRYN--------GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE  372 (504)
T ss_pred             cccceeee--------eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            86655431        2235778999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHH
Q 040048          564 GYSKARLRR  572 (608)
Q Consensus       564 ~~~~a~~~l  572 (608)
                      ++..+.-.+
T Consensus       373 sn~~~reGl  381 (504)
T KOG0624|consen  373 SNTRAREGL  381 (504)
T ss_pred             ccHHHHHHH
Confidence            987766544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3.2e-19  Score=172.96  Aligned_cols=307  Identities=13%  Similarity=0.028  Sum_probs=267.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE  349 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  349 (608)
                      .|.++....-+.-+..++-+-...-|++...+..+|.|++..|++++|+..|+++..++|....+.-.+|.++...|+++
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e  283 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE  283 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence            44455455555666677777788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHH
Q 040048          350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE  429 (608)
Q Consensus       350 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~  429 (608)
                      .-.......+. ++...      ..-|+--+......+++..|+...+++|..++.+. ..+.+.|.++..+++.++|+-
T Consensus       284 ~~~~L~~~Lf~-~~~~t------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-~alilKG~lL~~~~R~~~A~I  355 (564)
T KOG1174|consen  284 QDSALMDYLFA-KVKYT------ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-EALILKGRLLIALERHTQAVI  355 (564)
T ss_pred             hHHHHHHHHHh-hhhcc------hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-hHHHhccHHHHhccchHHHHH
Confidence            87777776655 33222      34556666777788999999999999999999885 678899999999999999999


Q ss_pred             HhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH-HHH
Q 040048          430 TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNG-NAL  508 (608)
Q Consensus       430 ~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg-~~~  508 (608)
                      .|+.+..+.|.+          .+.|..+-..|...|++.+|....+.++..-|.+.....            .+| .++
T Consensus       356 aFR~Aq~Lap~r----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt------------L~g~~V~  413 (564)
T KOG1174|consen  356 AFRTAQMLAPYR----------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT------------LFGTLVL  413 (564)
T ss_pred             HHHHHHhcchhh----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh------------hhcceee
Confidence            999999999975          788888999999999999999999999999999888765            444 333


Q ss_pred             -HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          509 -FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ  587 (608)
Q Consensus       509 -~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~  587 (608)
                       ..-.--++|..++++++.+.|....+...+|.++...|.+++++..+++.+...|+. ..+..||+++...+.+++|.+
T Consensus       414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~  492 (564)
T KOG1174|consen  414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAME  492 (564)
T ss_pred             ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHH
Confidence             333445889999999999999999999999999999999999999999999998875 578999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHhh
Q 040048          588 DYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       588 ~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|..|+.++|++....++|.
T Consensus       493 ~y~~ALr~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  493 YYYKALRQDPKSKRTLRGLR  512 (564)
T ss_pred             HHHHHHhcCccchHHHHHHH
Confidence            99999999999999888774

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.86  E-value=2.1e-18  Score=180.46  Aligned_cols=299  Identities=12%  Similarity=0.029  Sum_probs=237.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNK-TAALIALGRLLEAVFECREAIRIEPHYHRA-HHRLANL  341 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~la~~  341 (608)
                      ....+..|...+..|+|++|...+.++-+..+. +..++.+ +.+....|+++.|..++.++.+.+|+...+ ....+.+
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            445677888888899999999888776665433 4444444 556689999999999999999998887543 3455899


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH-------HHH
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY-------ALQ  414 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------~~l  414 (608)
                      +...|++++|+..++++.+ ..|++      ...+..++..+...|+|++++..+.+..+....+....-       ..+
T Consensus       163 ~l~~g~~~~Al~~l~~~~~-~~P~~------~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l  235 (398)
T PRK10747        163 QLARNENHAARHGVDKLLE-VAPRH------PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL  235 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHh-cCCCC------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998 88888      567777788889999999999999888887665443322       222


Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK  494 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  494 (608)
                      ........+.+.....++......|++          +.+...++..+...|+.++|...++++++..+ ++....    
T Consensus       236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~----------~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~----  300 (398)
T PRK10747        236 MDQAMADQGSEGLKRWWKNQSRKTRHQ----------VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVL----  300 (398)
T ss_pred             HHHHHHhcCHHHHHHHHHhCCHHHhCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHH----
Confidence            222223344455566666666555553          88999999999999999999999999999544 444322    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048          495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD  574 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~  574 (608)
                              .  ......++.+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++. .+..++.
T Consensus       301 --------l--~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~  369 (398)
T PRK10747        301 --------L--IPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLAD  369 (398)
T ss_pred             --------H--HhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Confidence                    2  2333559999999999999999999999999999999999999999999999999999864 4678999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q 040048          575 CFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       575 ~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ++.++|+.++|.++|++++.+.
T Consensus       370 ~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        370 ALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhh
Confidence            9999999999999999998864

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.86  E-value=8.8e-19  Score=185.40  Aligned_cols=346  Identities=16%  Similarity=0.158  Sum_probs=273.1

Q ss_pred             ccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 040048          235 HYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG  312 (608)
Q Consensus       235 ~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g  312 (608)
                      .+..+.-+...|..++|..++.++..  |.++.+|+.||.+|..+|+.++++.++-.|-.++|++...|..++....++|
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            33334444455667778888888754  7889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048          313 RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTL  392 (608)
Q Consensus       313 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A  392 (608)
                      ++.+|.-+|.+||+.+|.+....+..+.+|.++|+...|+..|.+++. +.|.. ............+..+...++-+.|
T Consensus       222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LDPPV-DIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hCCch-hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999999999999999999999999999999999 77722 1122233334446666777777899


Q ss_pred             HHHHHHHHHcCCC-ChHHHHHHHHHHHHHcCChHHHHHHhhcCCC--CCCccccc------------cc-----------
Q 040048          393 IQETRAAIAGGAD-SAPQIYALQAEALLKLHKHQEADETLKNGPN--FDVDETTR------------FF-----------  446 (608)
Q Consensus       393 ~~~~~~al~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~------------~~-----------  446 (608)
                      ++.++.++....+ .....+..++.+++....++.|.........  ..+++...            +.           
T Consensus       300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence            9999988874222 1234566788889999999888876644333  11111000            00           


Q ss_pred             -----------------------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048          447 -----------------------------GPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG  497 (608)
Q Consensus       447 -----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  497 (608)
                                                   .+......++.++..+...|++.+|+.+|..+....+......        
T Consensus       380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v--------  451 (895)
T KOG2076|consen  380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV--------  451 (895)
T ss_pred             hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh--------
Confidence                                         0114578889999999999999999999999988766554221        


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---------SKA  568 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a  568 (608)
                         |+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|++.++..+.-++.+         ...
T Consensus       452 ---w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri  528 (895)
T KOG2076|consen  452 ---WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI  528 (895)
T ss_pred             ---hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence               24999999999999999999999999999999999999999999999999999999877433222         345


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          569 RLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       569 ~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      ...+..++...|+.++=+..-...+
T Consensus       529 ~~~r~d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  529 LAHRCDILFQVGKREEFINTASTLV  553 (895)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            6788999999999998555444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=2.5e-19  Score=168.81  Aligned_cols=267  Identities=15%  Similarity=0.086  Sum_probs=223.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCC---C-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          273 EDYKAGNFAEALALYDAAISIDP---N-------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       273 ~~~~~g~~~~Al~~~~~al~~~p---~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      +++...+...|-......++.+-   .       +...-..+|.||+++|.+.+|.+.++.+++..| .++.+..|+.+|
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY  266 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY  266 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence            45666777777666665555431   1       223345789999999999999999999998776 478899999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH  422 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g  422 (608)
                      .+..+.+.|+..|.+.++ ..|.+                                         ...+..++.++..++
T Consensus       267 ~ridQP~~AL~~~~~gld-~fP~~-----------------------------------------VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLD-SFPFD-----------------------------------------VTYLLGQARIHEAME  304 (478)
T ss_pred             HHhccHHHHHHHHhhhhh-cCCch-----------------------------------------hhhhhhhHHHHHHHH
Confidence            999999999999999888 66666                                         245556678888888


Q ss_pred             ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048          423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR  502 (608)
Q Consensus       423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  502 (608)
                      ++++|.++|+.+++.+|.+          .++.-.+|.-|+.-++++-|+.+|++++++.-.+++.+.            
T Consensus       305 ~~~~a~~lYk~vlk~~~~n----------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~------------  362 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPIN----------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC------------  362 (478)
T ss_pred             hHHHHHHHHHHHHhcCCcc----------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh------------
Confidence            8888888888888888764          666667888889999999999999999999999998876            


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDP---YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      ++|.|++..++++-++..|++++....   .-+++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.
T Consensus       363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS  442 (478)
T ss_pred             hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence            899999999999999999999998643   33689999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          580 EKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      |+.++|..++..+-.+.|+-.++.-
T Consensus       443 G~i~~Arsll~~A~s~~P~m~E~~~  467 (478)
T KOG1129|consen  443 GDILGARSLLNAAKSVMPDMAEVTT  467 (478)
T ss_pred             CchHHHHHHHHHhhhhCcccccccc
Confidence            9999999999999999998666543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.85  E-value=3e-19  Score=179.12  Aligned_cols=235  Identities=14%  Similarity=0.040  Sum_probs=129.3

Q ss_pred             CHHHHHHHHHHHHhcC---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          279 NFAEALALYDAAISID---PN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYH  354 (608)
Q Consensus       279 ~~~~Al~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  354 (608)
                      ..+.++..+.++|...   |. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3445555555555422   22 2344555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcC
Q 040048          355 FKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG  434 (608)
Q Consensus       355 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~a  434 (608)
                      |+++++ ++|++                                         ..++..+|.++...|++++|+..|+++
T Consensus       121 ~~~Al~-l~P~~-----------------------------------------~~a~~~lg~~l~~~g~~~eA~~~~~~a  158 (296)
T PRK11189        121 FDSVLE-LDPTY-----------------------------------------NYAYLNRGIALYYGGRYELAQDDLLAF  158 (296)
T ss_pred             HHHHHH-hCCCC-----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            555555 44444                                         223333444444444444444444444


Q ss_pred             CCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048          435 PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF  514 (608)
Q Consensus       435 l~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~  514 (608)
                      ++.+|++          +.. .....+....+++++|+..|.+++...+...  |             ..+.++...|++
T Consensus       159 l~~~P~~----------~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~-------------~~~~~~~~lg~~  212 (296)
T PRK11189        159 YQDDPND----------PYR-ALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--W-------------GWNIVEFYLGKI  212 (296)
T ss_pred             HHhCCCC----------HHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCccc--c-------------HHHHHHHHccCC
Confidence            4444443          211 1111233456788888888877665433222  2             123444445554


Q ss_pred             HHH--HHHHHH----hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Q 040048          515 SEA--AAAYGD----GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP-GYSKARLRRADCFAKIEK  581 (608)
Q Consensus       515 ~eA--~~~~~~----al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~  581 (608)
                      .++  +..+.+    .+++.|...++|+++|.++...|++++|+.+|+++++.+| ++.+..+.+..+....+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence            332  333332    2344556678888888888888888888888888888886 666666666555544433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=3.5e-20  Score=187.64  Aligned_cols=240  Identities=19%  Similarity=0.205  Sum_probs=183.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 040048          268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE  347 (608)
Q Consensus       268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  347 (608)
                      +..|..+++.|+..+|.-+|+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHH
Q 040048          348 VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA  427 (608)
Q Consensus       348 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA  427 (608)
                      -.+|+.++.+.+. ..|...                                           +...+      +     
T Consensus       369 q~~Al~~L~~Wi~-~~p~y~-------------------------------------------~l~~a------~-----  393 (579)
T KOG1125|consen  369 QNQALKMLDKWIR-NKPKYV-------------------------------------------HLVSA------G-----  393 (579)
T ss_pred             HHHHHHHHHHHHH-hCccch-------------------------------------------hcccc------C-----
Confidence            9999999888876 333321                                           00000      0     


Q ss_pred             HHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHH
Q 040048          428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS--NNKEVNMVMRKAKGVAAARSNG  505 (608)
Q Consensus       428 ~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~lg  505 (608)
                             ....+.....+    .+..             .+..-.+.|..+....|  .++++..            .||
T Consensus       394 -------~~~~~~~~~s~----~~~~-------------~l~~i~~~fLeaa~~~~~~~DpdvQ~------------~LG  437 (579)
T KOG1125|consen  394 -------ENEDFENTKSF----LDSS-------------HLAHIQELFLEAARQLPTKIDPDVQS------------GLG  437 (579)
T ss_pred             -------ccccccCCcCC----CCHH-------------HHHHHHHHHHHHHHhCCCCCChhHHh------------hhH
Confidence                   00000000000    0011             12233445555555666  4566654            778


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS  585 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A  585 (608)
                      .+|...|+|++|+.+|+.||...|++..+|+.||..+..-.+.++|+..|.+|+++.|.+..++++||.+++.+|.|++|
T Consensus       438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA  517 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA  517 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhCCC
Q 040048          586 MQDYEILKKEAPD  598 (608)
Q Consensus       586 ~~~~~~al~l~P~  598 (608)
                      .++|-.||.+.+.
T Consensus       518 ~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  518 VKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHhhhc
Confidence            8888888887665

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.84  E-value=2.6e-17  Score=167.97  Aligned_cols=310  Identities=14%  Similarity=0.066  Sum_probs=223.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      .|...+..--..|..++-..+|++++...|.....|.+.+.-+...|+...|...+..+++.+|++.+.|+.--.+....
T Consensus       552 lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en  631 (913)
T KOG0495|consen  552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEN  631 (913)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcc
Confidence            33333333333444444444444444444444444455555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048          346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ  425 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~  425 (608)
                      .+++.|...|.++.. ..+..       ..|+..+.....++..++|+..++++++..|+. ..+|..+|.++..+++.+
T Consensus       632 ~e~eraR~llakar~-~sgTe-------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-~Kl~lmlGQi~e~~~~ie  702 (913)
T KOG0495|consen  632 DELERARDLLAKARS-ISGTE-------RVWMKSANLERYLDNVEEALRLLEEALKSFPDF-HKLWLMLGQIEEQMENIE  702 (913)
T ss_pred             ccHHHHHHHHHHHhc-cCCcc-------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-HHHHHHHhHHHHHHHHHH
Confidence            555555555555544 33332       345555555666778888888888888888876 477888888888888888


Q ss_pred             HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 040048          426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNG  505 (608)
Q Consensus       426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg  505 (608)
                      .|...|...++..|..          ..+|+.++.+-...|..-.|...++++.-.+|.+...|.            ..-
T Consensus       703 ~aR~aY~~G~k~cP~~----------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwl------------e~I  760 (913)
T KOG0495|consen  703 MAREAYLQGTKKCPNS----------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWL------------ESI  760 (913)
T ss_pred             HHHHHHHhccccCCCC----------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHH------------HHH
Confidence            8888888888888864          778888888888888888888888888888888887775            556


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPY------------------------------NSVLLCNRAACRSKLGQFEKAIEDC  555 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~  555 (608)
                      .+-.+.|..++|.....+|++..|.                              ++.++...|.++....++++|.++|
T Consensus       761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf  840 (913)
T KOG0495|consen  761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF  840 (913)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            7778889999998888888876554                              4667888899999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          556 NAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       556 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .++++.+|++.++|..+-..+...|.-++-.+.|.++..-.|.+.+.|...
T Consensus       841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av  891 (913)
T KOG0495|consen  841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV  891 (913)
T ss_pred             HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence            999999999999999999999999999999999999999999998888764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.3e-18  Score=174.97  Aligned_cols=359  Identities=14%  Similarity=0.106  Sum_probs=239.2

Q ss_pred             ccccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhh-hCCCCHHHHHHHHHHH
Q 040048          200 SSGVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRAL-STRMDPETLKIMGNED  274 (608)
Q Consensus       200 ~~A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~lg~~~  274 (608)
                      .-|+..|.++|.++|...--  +....+...  +++|..                  ...+.+ +.|.=+..|..+|..+
T Consensus        19 ~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~------------------da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen   19 ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALK------------------DATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHH------------------HHHHHHhcCCchhhHHHHhHHHH
Confidence            34788888999999873211  333333222  333332                  111111 3466688999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC---------------------HHHHHHHHHHHHh---h---
Q 040048          275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR---------------------LLEAVFECREAIR---I---  327 (608)
Q Consensus       275 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~eA~~~~~~al~---~---  327 (608)
                      +-.|+|++|+..|.+.|+.+|++...+..++.++.....                     +--.-..|...++   .   
T Consensus        81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~  160 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT  160 (539)
T ss_pred             HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence            999999999999999999999998888777776622200                     0000001111100   0   


Q ss_pred             --------------------------------------CCCC---------------------HHHHHHHHHHHHHcCCH
Q 040048          328 --------------------------------------EPHY---------------------HRAHHRLANLYLRLGEV  348 (608)
Q Consensus       328 --------------------------------------~p~~---------------------~~~~~~la~~~~~~g~~  348 (608)
                                                            .|..                     ......+|...+...++
T Consensus       161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f  240 (539)
T KOG0548|consen  161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF  240 (539)
T ss_pred             hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence                                                  1100                     12345677777777788


Q ss_pred             HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH
Q 040048          349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD  428 (608)
Q Consensus       349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~  428 (608)
                      ..|+.+|..++. ++.+-.........++.++......+..++|++.-........ ........+|..|...++++.|+
T Consensus       241 ~~a~q~y~~a~e-l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k-lIak~~~r~g~a~~k~~~~~~ai  318 (539)
T KOG0548|consen  241 ETAIQHYAKALE-LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK-LIAKALARLGNAYTKREDYEGAI  318 (539)
T ss_pred             HHHHHHHHHHHh-HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH-HHHHHHHHhhhhhhhHHhHHHHH
Confidence            888888888877 6632223333344455555555555555555444333221100 01233334555666666666666


Q ss_pred             HHhhcCCCCCCc--ccc---------------cccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048          429 ETLKNGPNFDVD--ETT---------------RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV  491 (608)
Q Consensus       429 ~~l~~al~~~p~--~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  491 (608)
                      .+|.+++.....  ...               .+.++ ..+.-....|..++..|+|..|+.+|.++++.+|++...+. 
T Consensus       319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~p-e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs-  396 (539)
T KOG0548|consen  319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINP-EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS-  396 (539)
T ss_pred             HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH-
Confidence            666665543322  000               00000 11444556799999999999999999999999999999887 


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048          492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR  571 (608)
Q Consensus       492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  571 (608)
                                 ++|.+|.++|.+..|+..++.+++++|+....|...|.++..+.+|++|++.|.++++.+|++.++.-.
T Consensus       397 -----------NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~  465 (539)
T KOG0548|consen  397 -----------NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG  465 (539)
T ss_pred             -----------HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence                       999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 040048          572 RADCFAKIEKWEASMQDYEI  591 (608)
Q Consensus       572 la~~~~~~g~~~~A~~~~~~  591 (608)
                      +.+|+..+.......+.+++
T Consensus       466 ~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  466 YRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHHHhhcCCCHHHHHHh
Confidence            99998876544445555555

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.83  E-value=9.2e-18  Score=171.16  Aligned_cols=312  Identities=17%  Similarity=0.052  Sum_probs=288.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      -..|..-+..+.+.+-++-|+..|..+|+.+|.....|...+..-..-|..++-..++++++..-|.....|...+..+.
T Consensus       516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW  595 (913)
T ss_pred             HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK  423 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~  423 (608)
                      ..|+...|...+.++++ ..|+.      ...++....+......++.|...+.++....+.  ..+|..-+.+...++.
T Consensus       596 ~agdv~~ar~il~~af~-~~pns------eeiwlaavKle~en~e~eraR~llakar~~sgT--eRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFE-ANPNS------EEIWLAAVKLEFENDELERARDLLAKARSISGT--ERVWMKSANLERYLDN  666 (913)
T ss_pred             hcCCcHHHHHHHHHHHH-hCCCc------HHHHHHHHHHhhccccHHHHHHHHHHHhccCCc--chhhHHHhHHHHHhhh
Confidence            99999999999999998 88887      677888888888899999999999999987766  4788888999999999


Q ss_pred             hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                      .++|+.+++++++..|+.          ..+|+.+|+++..+++.+.|...|...++..|.....|.            .
T Consensus       667 ~eeA~rllEe~lk~fp~f----------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl------------l  724 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDF----------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL------------L  724 (913)
T ss_pred             HHHHHHHHHHHHHhCCch----------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH------------H
Confidence            999999999999999986          899999999999999999999999999999999999987            7


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------------
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY------------------  565 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------  565 (608)
                      ++.+-.+.|....|...++++.-.+|.+..+|.....+-.+.|+.+.|.....+||+-.|++                  
T Consensus       725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT  804 (913)
T KOG0495|consen  725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT  804 (913)
T ss_pred             HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence            88999999999999999999999999999999999999999999999999999998876654                  


Q ss_pred             ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          566 ------------SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       566 ------------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                                  +.+++..|.++....++++|.++|+++++++|++.++|-.+
T Consensus       805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f  857 (913)
T KOG0495|consen  805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF  857 (913)
T ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence                        45567789999999999999999999999999999988654

>PRK12370 invasion protein regulator; Provisional

Probab=99.83  E-value=1.5e-18  Score=189.39  Aligned_cols=237  Identities=13%  Similarity=0.038  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048          301 RSNKTAALIAL---GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL  377 (608)
Q Consensus       301 ~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~  377 (608)
                      ++..|..+...   +.+++|+.+|+++++++|+++.+|..+|.+|...+....           ..              
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-----------~~--------------  315 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-----------FD--------------  315 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-----------cc--------------
Confidence            45556544433   457899999999999999999999999998875533100           00              


Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~  457 (608)
                             ..+++.+|+..++++++.+|++ +.++..+|.++...|++++|+..|+++++++|++          +.+++.
T Consensus       316 -------~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----------~~a~~~  377 (553)
T PRK12370        316 -------KQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS----------ADIKYY  377 (553)
T ss_pred             -------cchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------HHHHHH
Confidence                   0133445555555555555555 4778889999999999999999999999999985          889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-PYNSVLLC  536 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~  536 (608)
                      +|.++...|++++|+..++++++++|.+.....            .++.+++..|++++|+..+++++... |+++.++.
T Consensus       378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~------------~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~  445 (553)
T PRK12370        378 YGWNLFMAGQLEEALQTINECLKLDPTRAAAGI------------TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS  445 (553)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH------------HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH
Confidence            999999999999999999999999999876643            45566778999999999999999875 78899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      .+|.++..+|++++|+..+.+++...|....++..++.+|...|+  +|...++++++
T Consensus       446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999885  77776776655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.83  E-value=2.6e-18  Score=172.35  Aligned_cols=224  Identities=15%  Similarity=0.011  Sum_probs=168.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  141 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA  141 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      +...|++++|+..|++++. .+|++..                                          ......+....
T Consensus       142 l~~~g~~~eA~~~~~~al~-~~P~~~~------------------------------------------~~~~~~l~~~~  178 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQ-DDPNDPY------------------------------------------RALWLYLAESK  178 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHH-hCCCCHH------------------------------------------HHHHHHHHHcc
Confidence            9999999999999999998 8887731                                          00111223345


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      +++++|+..|.+.....+.+            .|. .+.++...|++.++ ..++.+.+.........     ....++|
T Consensus       179 ~~~~~A~~~l~~~~~~~~~~------------~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~-----~~~~ea~  239 (296)
T PRK11189        179 LDPKQAKENLKQRYEKLDKE------------QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELA-----ERLCETY  239 (296)
T ss_pred             CCHHHHHHHHHHHHhhCCcc------------ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH-----HHHHHHH
Confidence            67788888886655432211            111 34555666766544 24444443222222211     0123345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHcCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDP-YNSVLLCNRAACRSKLGQ  547 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~  547 (608)
                      +.+|.++...|++++|+.+|++++..+| +..+..+.+..+....++
T Consensus       240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        240 FYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence            6999999999999999999999999997 556666666555544433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.82  E-value=3.5e-20  Score=185.25  Aligned_cols=241  Identities=20%  Similarity=0.201  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 040048          301 RSNKTAALIALGRLLEAVFECREAIR-I-EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLN  378 (608)
Q Consensus       301 ~~~la~~~~~~g~~~eA~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~  378 (608)
                      .+.+|.+++..|++++|++.+.+.+. . .|++...|..+|.+...++++++|+..|++++. .++..            
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~~~~~------------   77 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-SDKAN------------   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc------------
Confidence            34668888888999999998866554 4 477888888888888888888888888888876 44443            


Q ss_pred             HhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 040048          379 KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVR  458 (608)
Q Consensus       379 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l  458 (608)
                                                   +..+..++.+ ...+++++|+.+++++.+..++           +..+...
T Consensus        78 -----------------------------~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-----------~~~l~~~  116 (280)
T PF13429_consen   78 -----------------------------PQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-----------PRYLLSA  116 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------cccccccccc-cccccccccccccccccccccc-----------cchhhHH
Confidence                                         3344555555 6889999999999988876654           5667778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 040048          459 AQVNLACGRFEDALAAIQKAAKQD--SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLC  536 (608)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  536 (608)
                      ..++...++++++...++++....  +.+..++.            .+|.++.+.|++++|+.+|+++++.+|++..++.
T Consensus       117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~  184 (280)
T PF13429_consen  117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL------------ALAEIYEQLGDPDKALRDYRKALELDPDDPDARN  184 (280)
T ss_dssp             -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH------------HHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            888999999999999999987655  44555554            8899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      .++.++...|+++++.+.++......|+++..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...+.
T Consensus       185 ~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a  255 (280)
T PF13429_consen  185 ALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYA  255 (280)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence            99999999999999999999998888899999999999999999999999999999999999999887654

>TIGR00540 hemY_coli hemY protein

Probab=99.82  E-value=1.9e-17  Score=174.09  Aligned_cols=304  Identities=17%  Similarity=0.096  Sum_probs=235.5

Q ss_pred             cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHH
Q 040048          234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-SYRSNKTAALIA  310 (608)
Q Consensus       234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~  310 (608)
                      .....++.....+.+..|.........  |.....+...|..+..+|++++|..+|.++.+..|+.. .+....+.++..
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA  165 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence            333444444455555555555554433  33455667789999999999999999999999999885 466667999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHH
Q 040048          311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWN  390 (608)
Q Consensus       311 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (608)
                      .|++++|+..+++.++..|+++.++..++.++...|++++|++.+.+.++ ....+......+..  .........+..+
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~--~a~~~~l~~~~~~  242 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQ--KAEIGLLDEAMAD  242 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHH--HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999886 32222111111111  1122223444555


Q ss_pred             HHHHHHHHHHHcCCC---ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048          391 TLIQETRAAIAGGAD---SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR  467 (608)
Q Consensus       391 ~A~~~~~~al~~~~~---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~  467 (608)
                      .....+..+....|.   ..+.++..++..+...|++++|+..++++++..|++..        ..............++
T Consensus       243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~--------~~~~~l~~~~~l~~~~  314 (409)
T TIGR00540       243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA--------ISLPLCLPIPRLKPED  314 (409)
T ss_pred             cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc--------chhHHHHHhhhcCCCC
Confidence            566677777777774   35789999999999999999999999999999998521        1111333344455688


Q ss_pred             HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHH
Q 040048          468 FEDALAAIQKAAKQDSNNK--EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG--DGLGLDPYNSVLLCNRAACRS  543 (608)
Q Consensus       468 ~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~--~al~~~p~~~~~~~~la~~~~  543 (608)
                      .+.++..++++++..|+++  ....            .+|.+++..|+|++|.++|+  .+++..|+... +..+|.++.
T Consensus       315 ~~~~~~~~e~~lk~~p~~~~~~ll~------------sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~  381 (409)
T TIGR00540       315 NEKLEKLIEKQAKNVDDKPKCCINR------------ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD  381 (409)
T ss_pred             hHHHHHHHHHHHHhCCCChhHHHHH------------HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence            9999999999999999999  5554            89999999999999999999  68888887655 669999999


Q ss_pred             HcCCHHHHHHHHHHHHhc
Q 040048          544 KLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       544 ~~g~~~~A~~~~~~al~~  561 (608)
                      ++|+.++|.++|++++..
T Consensus       382 ~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       382 QAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.82  E-value=1.3e-17  Score=173.80  Aligned_cols=321  Identities=17%  Similarity=0.117  Sum_probs=246.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc------------------------------
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL------------------------------  311 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~------------------------------  311 (608)
                      .++.+|-.+...+...|+|+.+.++|++++...-...+.|+.++.+|...                              
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas  400 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS  400 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence            46667777777777778888888888777765444444444444444444                              


Q ss_pred             -------CCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhCCCCCchhHH
Q 040048          312 -------GRLLEAVFECREAIRIEP-----HYHRAHHRLANLYLRL-----------GEVEKAIYHFKHAGPEADQVDIA  368 (608)
Q Consensus       312 -------g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~p~~~~  368 (608)
                             +.+++++.+..+++....     -.+.++..+|.+|..+           ....+++..++++++ ++|.|  
T Consensus       401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-~d~~d--  477 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-FDPTD--  477 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-cCCCC--
Confidence                   455555555555554210     1133455555555432           123456666667766 66666  


Q ss_pred             HHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccC-
Q 040048          369 KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFG-  447 (608)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~-  447 (608)
                          ..+.+.++..+...++...|.....++++.++.+....|..++.++...+++.+|+.+.+.++.-.|++..-... 
T Consensus       478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  478 ----PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             ----chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence                467778888899999999999999999999998889999999999999999999999887777665551100000 


Q ss_pred             --------------------------------------------------------------------------------
Q 040048          448 --------------------------------------------------------------------------------  447 (608)
Q Consensus       448 --------------------------------------------------------------------------------  447 (608)
                                                                                                      
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence                                                                                            


Q ss_pred             C-----C-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048          448 P-----I-------GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS  515 (608)
Q Consensus       448 ~-----~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~  515 (608)
                      +     .       .....|...+..+...++.++|..++.++-.++|.....+.            ..|.++...|++.
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~------------~~G~~~~~~~~~~  701 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY------------LRGLLLEVKGQLE  701 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH------------HhhHHHHHHHhhH
Confidence            0     0       01345667778888888888888888888888877766664            8899999999999


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE--DCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       516 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      +|.+.|..++.++|+++.....+|.++.+.|+-.-|..  .+..+++++|.++++|+.+|.++.++|+.++|.++|..++
T Consensus       702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999888888  9999999999999999999999999999999999999999


Q ss_pred             HhCCCCHH
Q 040048          594 KEAPDDEE  601 (608)
Q Consensus       594 ~l~P~~~~  601 (608)
                      ++.+.+|.
T Consensus       782 qLe~S~PV  789 (799)
T KOG4162|consen  782 QLEESNPV  789 (799)
T ss_pred             hhccCCCc
Confidence            99998874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=1.3e-17  Score=161.25  Aligned_cols=203  Identities=16%  Similarity=0.128  Sum_probs=146.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      +...|++++|+..|++++. ..+.                                                        
T Consensus       109 ~~~~g~~~~A~~~~~~~~~-~~~~--------------------------------------------------------  131 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIE-DPLY--------------------------------------------------------  131 (234)
T ss_pred             HHHcccHHHHHHHHHHHHh-cccc--------------------------------------------------------
Confidence            9999999999988888764 1100                                                        


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                                       +.          ....+..+|.++...|++++|...+.+++...|++...+.           
T Consensus       132 -----------------~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------  173 (234)
T TIGR02521       132 -----------------PQ----------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL-----------  173 (234)
T ss_pred             -----------------cc----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH-----------
Confidence                             00          1344445566666666666666666666666665544433           


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN  560 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  560 (608)
                       .+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus       174 -~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       174 -ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence             5555666666666666666665555555555555555555555555555555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=1.3e-17  Score=161.15  Aligned_cols=202  Identities=20%  Similarity=0.165  Sum_probs=173.5

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL  377 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~  377 (608)
                      +..++.+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++. ..|.+           
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~-----------   98 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT-LNPNN-----------   98 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC-----------
Confidence            567888888888888888888888888888888888888888888888888888888888766 33332           


Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~  457 (608)
                                                                                                ..++..
T Consensus        99 --------------------------------------------------------------------------~~~~~~  104 (234)
T TIGR02521        99 --------------------------------------------------------------------------GDVLNN  104 (234)
T ss_pred             --------------------------------------------------------------------------HHHHHH
Confidence                                                                                      456677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDS--NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL  535 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  535 (608)
                      +|.++...|++++|+..+++++...+  .....+            ..+|.++...|++++|+..|.+++..+|.+...+
T Consensus       105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  172 (234)
T TIGR02521       105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSL------------ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL  172 (234)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhccccccchHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence            88888888999999999998887532  222333            3789999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      ..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus       173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       173 LELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999999999999999999999998887755

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4e-18  Score=171.92  Aligned_cols=257  Identities=17%  Similarity=0.145  Sum_probs=220.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.++..+-..--+++..|+..+=..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|....+|...|.
T Consensus       275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh  354 (611)
T KOG1173|consen  275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH  354 (611)
T ss_pred             CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence            56665554433399999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      .|...|+.++|+.+|..|-+ +-+..                                         ..-...+|.-|..
T Consensus       355 sfa~e~EhdQAmaaY~tAar-l~~G~-----------------------------------------hlP~LYlgmey~~  392 (611)
T KOG1173|consen  355 SFAGEGEHDQAMAAYFTAAR-LMPGC-----------------------------------------HLPSLYLGMEYMR  392 (611)
T ss_pred             HhhhcchHHHHHHHHHHHHH-hccCC-----------------------------------------cchHHHHHHHHHH
Confidence            99999999999999998876 33332                                         1223456778888


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN----NKEVNMVMRKAK  496 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~  496 (608)
                      .++++-|..+|.+++.+.|.+          +-++..+|.+.+..+.|.+|..+|+.++..-+.    .. .|.      
T Consensus       393 t~n~kLAe~Ff~~A~ai~P~D----------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~------  455 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIAPSD----------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWE------  455 (611)
T ss_pred             hccHHHHHHHHHHHHhcCCCc----------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chh------
Confidence            899999999999999999986          888999999999999999999999999843222    11 121      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                        -.+.++|.++.+.+++++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|++.|.++|.+.|++..+--.|+.+.
T Consensus       456 --p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  456 --PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             --HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence              224599999999999999999999999999999999999999999999999999999999999999977766666554


Q ss_pred             HH
Q 040048          577 AK  578 (608)
Q Consensus       577 ~~  578 (608)
                      ..
T Consensus       534 e~  535 (611)
T KOG1173|consen  534 ED  535 (611)
T ss_pred             Hh
Confidence            43

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.80  E-value=4.3e-17  Score=170.60  Aligned_cols=304  Identities=15%  Similarity=0.126  Sum_probs=229.7

Q ss_pred             CcccccccCCCCCCCCCCcchhHHHHhhhC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCChhH-HHHHHHH
Q 040048          231 HPQNHYNYNPPKPASSSSAEPTSLCRALST-RMDPETLKIM-GNEDYKAGNFAEALALYDAAISIDPNKASY-RSNKTAA  307 (608)
Q Consensus       231 ~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l-g~~~~~~g~~~~Al~~~~~al~~~p~~~~~-~~~la~~  307 (608)
                      .+...+..++.....|.+..++........ ...|..++.+ +......|+++.|..+|.++.+.+|+...+ ....+.+
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            444455555555555666666655554322 2345666665 555599999999999999999999998544 3455899


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHH--HHHHHHhHHHHH
Q 040048          308 LIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL--QAHLNKCTDAKR  385 (608)
Q Consensus       308 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~--~~~~~~~~~~~~  385 (608)
                      +...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+.+..+ ....+......+  ..+..+......
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888765 333222111111  222222222223


Q ss_pred             hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc
Q 040048          386 TRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC  465 (608)
Q Consensus       386 ~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~  465 (608)
                      ..+.+.....++..-...+++ +.+...++..+...|+.++|...++++++..++           ..+....+.+  ..
T Consensus       242 ~~~~~~l~~~w~~lp~~~~~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-----------~~l~~l~~~l--~~  307 (398)
T PRK10747        242 DQGSEGLKRWWKNQSRKTRHQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-----------ERLVLLIPRL--KT  307 (398)
T ss_pred             hcCHHHHHHHHHhCCHHHhCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHhhc--cC
Confidence            333344444444333333433 678899999999999999999999999986554           4444444443  45


Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 040048          466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL  545 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  545 (608)
                      +++++++..+++.++..|+++....            .+|.++...++|++|..+|+++++..|++ ..+..++.++.++
T Consensus       308 ~~~~~al~~~e~~lk~~P~~~~l~l------------~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~  374 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGDTPLLWS------------TLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRL  374 (398)
T ss_pred             CChHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Confidence            9999999999999999999999876            88999999999999999999999999985 4466899999999


Q ss_pred             CCHHHHHHHHHHHHhcC
Q 040048          546 GQFEKAIEDCNAALNVR  562 (608)
Q Consensus       546 g~~~~A~~~~~~al~~~  562 (608)
                      |+.++|..+|++++.+.
T Consensus       375 g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        375 HKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CCHHHHHHHHHHHHhhh
Confidence            99999999999998764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=9.8e-17  Score=157.14  Aligned_cols=286  Identities=15%  Similarity=0.048  Sum_probs=251.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-SYRSNKTAALIAL--GRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      .-...+..++++|+++.|++.++-.-..+.... .+-.++..+++.+  .++..|..+...++.++..++.++.+.|.+-
T Consensus       421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~  500 (840)
T KOG2003|consen  421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA  500 (840)
T ss_pred             hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence            345567788999999999999876555544432 3456666666663  4789999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH  422 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g  422 (608)
                      +..|++++|.+.|++++. .+...      .+++++.+..+..+|+.++|+.+|-+.-.+--++ .+++..++.+|..+.
T Consensus       501 f~ngd~dka~~~ykeal~-ndasc------~ealfniglt~e~~~~ldeald~f~klh~il~nn-~evl~qianiye~le  572 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALN-NDASC------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-AEVLVQIANIYELLE  572 (840)
T ss_pred             eecCcHHHHHHHHHHHHc-CchHH------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhh
Confidence            999999999999999987 44443      7899999999999999999999998876554333 578899999999999


Q ss_pred             ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048          423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR  502 (608)
Q Consensus       423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  502 (608)
                      +..+|+++|.++..+-|.+          +.++..+|.+|-+.|+-.+|..++-......|.+.+...            
T Consensus       573 d~aqaie~~~q~~slip~d----------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie------------  630 (840)
T KOG2003|consen  573 DPAQAIELLMQANSLIPND----------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE------------  630 (840)
T ss_pred             CHHHHHHHHHHhcccCCCC----------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH------------
Confidence            9999999999999999986          899999999999999999999999999999999988876            


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      .+|..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|.+.|+..-...|.+.+.+.-|.++.-.+|-
T Consensus       631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            7788999999999999999999999999988889999999999999999999999999999999998888888777663

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.79  E-value=4.5e-17  Score=147.57  Aligned_cols=208  Identities=15%  Similarity=0.108  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      ..+...+|..|+..|++..|..-+++||+.||++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            56788888888888999889888999998888888888888888888888888888899888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK  423 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~  423 (608)
                      .+|++++|...|++++.  +|..                                                         
T Consensus       115 ~qg~~~eA~q~F~~Al~--~P~Y---------------------------------------------------------  135 (250)
T COG3063         115 AQGRPEEAMQQFERALA--DPAY---------------------------------------------------------  135 (250)
T ss_pred             hCCChHHHHHHHHHHHh--CCCC---------------------------------------------------------
Confidence            88888888888888874  2322                                                         


Q ss_pred             hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                                     +          ..+..+.++|.|.++.|+++.|.+.|+++++++|+.+....            .
T Consensus       136 ---------------~----------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l------------~  178 (250)
T COG3063         136 ---------------G----------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL------------E  178 (250)
T ss_pred             ---------------C----------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH------------H
Confidence                           0          12667777888888888888888888888888877777665            6


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                      ++..+++.|+|..|..++++.....+-.+..+.....+-...|+-+.|-++=.+.....|...+
T Consensus       179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         179 LARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            7777777777777777777777666666666666666667777777766666666666666543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.79  E-value=1.1e-16  Score=164.01  Aligned_cols=352  Identities=15%  Similarity=0.117  Sum_probs=263.8

Q ss_pred             cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 040048          234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL  311 (608)
Q Consensus       234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~  311 (608)
                      ..|+.+++.+....+.....+++.++.  |.+++.+-..|..+...|+-++|..+.+.++..++.+...|+.+|.++...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            445555555555445555666677765  678999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048          312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       312 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (608)
                      .+|++|+++|+.|+.++|++...|..++.+..++++++.....-.+.++ +.|..      ...|+..+..+.-.|++..
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq-l~~~~------ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ-LRPSQ------RASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hhhhh------HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888888 77776      5677888888888999999


Q ss_pred             HHHHHHHHHHcC---CCCh----HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048          392 LIQETRAAIAGG---ADSA----PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA  464 (608)
Q Consensus       392 A~~~~~~al~~~---~~~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~  464 (608)
                      |+..++......   |+..    .........++.+.|.+++|++.+..--...-+          ........|.+++.
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D----------kla~~e~ka~l~~k  231 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD----------KLAFEETKADLLMK  231 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH----------HHHHhhhHHHHHHH
Confidence            998888776654   2211    234445567778889999998887665432222          25566678999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--------HHHH--------------HHHHHHHHHcCCHHHHH----
Q 040048          465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG--------VAAA--------------RSNGNALFKQAKFSEAA----  518 (608)
Q Consensus       465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------~~~~--------------~~lg~~~~~~g~~~eA~----  518 (608)
                      ++++++|+..|...+..+|++...+..+..+.-        +..+              ..++.....-.++.+.+    
T Consensus       232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL  311 (700)
T KOG1156|consen  232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL  311 (700)
T ss_pred             HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence            999999999999999999999877654433220        0000              00000000000111110    


Q ss_pred             -------------------------HHHHHhh-------cC----C--------CCC--HHHHHHHHHHHHHcCCHHHHH
Q 040048          519 -------------------------AAYGDGL-------GL----D--------PYN--SVLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       519 -------------------------~~~~~al-------~~----~--------p~~--~~~~~~la~~~~~~g~~~~A~  552 (608)
                                               .+.++.+       .-    +        |..  .+.++.++.-+...|+++.|.
T Consensus       312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~  391 (700)
T KOG1156|consen  312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL  391 (700)
T ss_pred             HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence                                     0112211       10    0        111  356677888899999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      .+++.|+...|..++.|...|+++...|++++|..+++.+.++|-.|.-+
T Consensus       392 ~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I  441 (700)
T KOG1156|consen  392 EYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI  441 (700)
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence            99999999999999999999999999999999999999999998776644

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.6e-16  Score=150.14  Aligned_cols=268  Identities=18%  Similarity=0.163  Sum_probs=126.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHH
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-----HRAHHRLANLYLR  344 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~  344 (608)
                      .|.-++...+.++|+..|-.+++.+|...+++..+|..+...|..+.|+..-+..+. .|+.     ..+...||.-|+.
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~  119 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMA  119 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555555555555555555555555555444333 2322     2244555555555


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH  424 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~  424 (608)
                      .|-++.|...|..... . +.     ....+.-.+..+|-...+|++||+..++..+.++                    
T Consensus       120 aGl~DRAE~~f~~L~d-e-~e-----fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--------------------  172 (389)
T COG2956         120 AGLLDRAEDIFNQLVD-E-GE-----FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG--------------------  172 (389)
T ss_pred             hhhhhHHHHHHHHHhc-c-hh-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--------------------
Confidence            5555555555555432 0 11     1133334444444455555555555555544443                    


Q ss_pred             HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048          425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN  504 (608)
Q Consensus       425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l  504 (608)
                                     ......     .+..+..+|..+....+++.|+..+.++++.+|+...+..            .+
T Consensus       173 ---------------q~~~~e-----IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi------------~l  220 (389)
T COG2956         173 ---------------QTYRVE-----IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI------------IL  220 (389)
T ss_pred             ---------------ccchhH-----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh------------hh
Confidence                           322111     1344444444444555555555555555555555444433            44


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 040048          505 GNALFKQAKFSEAAAAYGDGLGLDPYN-SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWE  583 (608)
Q Consensus       505 g~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~  583 (608)
                      |.++...|+|+.|++.++.+++.+|+. +++...|..||.++|+.++.+..+.++.+..+.. .+-..++.+-....-.+
T Consensus       221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~  299 (389)
T COG2956         221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGID  299 (389)
T ss_pred             hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChH
Confidence            555555555555555555555554443 3344444555555555555555555555444332 23333333333333344


Q ss_pred             HHHHHHHHHHHhCCC
Q 040048          584 ASMQDYEILKKEAPD  598 (608)
Q Consensus       584 ~A~~~~~~al~l~P~  598 (608)
                      .|..++.+-+...|+
T Consensus       300 ~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         300 AAQAYLTRQLRRKPT  314 (389)
T ss_pred             HHHHHHHHHHhhCCc
Confidence            444444444444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.79  E-value=7.9e-17  Score=145.98  Aligned_cols=212  Identities=20%  Similarity=0.181  Sum_probs=192.7

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL  377 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~  377 (608)
                      ..+...+|.-|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|.+.|++++. ++|++           
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-l~p~~-----------  102 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS-LAPNN-----------  102 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-cCCCc-----------
Confidence            456888999999999999999999999999999999999999999999999999999999998 77665           


Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~  457 (608)
                                                                                                .+++.+
T Consensus       103 --------------------------------------------------------------------------GdVLNN  108 (250)
T COG3063         103 --------------------------------------------------------------------------GDVLNN  108 (250)
T ss_pred             --------------------------------------------------------------------------cchhhh
Confidence                                                                                      678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQ--DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL  535 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  535 (608)
                      .|..++.+|++++|...|++++..  .+.....+.            ++|.|..+.|+++.|..+|+++++++|+.+...
T Consensus       109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~e------------N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLE------------NLGLCALKAGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhh------------hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence            999999999999999999999863  233344444            999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ..++..+++.|+|-.|..++++.....+-..+.+.....+-...|+-+.|-++=.+.-...|..++....+.
T Consensus       177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f~~  248 (250)
T COG3063         177 LELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTFLA  248 (250)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhHhc
Confidence            999999999999999999999999988888888888889999999999999999999999999998765543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.2e-17  Score=158.39  Aligned_cols=289  Identities=13%  Similarity=0.003  Sum_probs=259.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      .+.+...+..+|.+++..|++.+|+..|+++.-++|......-..|..+...|+++.-.......+.++.....-|+--+
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~  307 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA  307 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence            37889999999999999999999999999999999999999999999999999999998888888888877888899999


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048          340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL  419 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~  419 (608)
                      .+++...++..|+.+-++++. .+|.+      ...++.+|..+...++.++|+-.|+.++.+.|.. -+.|..+..+|+
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~-~~~r~------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-L~~Y~GL~hsYL  379 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCID-SEPRN------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-LEIYRGLFHSYL  379 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhc-cCccc------chHHHhccHHHHhccchHHHHHHHHHHHhcchhh-HHHHHHHHHHHH
Confidence            999999999999999999999 99988      7899999999999999999999999999998766 478999999999


Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA-QVNL-ACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG  497 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  497 (608)
                      ..|++.||...-+.++...|..          +..+..+| .++. .-.--++|..++++++.+.|....+..       
T Consensus       380 A~~~~kEA~~~An~~~~~~~~s----------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~-------  442 (564)
T KOG1174|consen  380 AQKRFKEANALANWTIRLFQNS----------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN-------  442 (564)
T ss_pred             hhchHHHHHHHHHHHHHHhhcc----------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH-------
Confidence            9999999999998888877764          77777775 4443 333468999999999999999988876       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                           .++.++...|.+.+++.++++.+...|+ ...+..||.++...+.+.+|+++|..|+.++|++..+...+-.+-.
T Consensus       443 -----~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK  516 (564)
T KOG1174|consen  443 -----LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK  516 (564)
T ss_pred             -----HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence                 8899999999999999999999999886 5788899999999999999999999999999999888777655544


Q ss_pred             Hc
Q 040048          578 KI  579 (608)
Q Consensus       578 ~~  579 (608)
                      .+
T Consensus       517 ~~  518 (564)
T KOG1174|consen  517 SD  518 (564)
T ss_pred             cc
Confidence            43

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.79  E-value=1.7e-15  Score=173.27  Aligned_cols=301  Identities=11%  Similarity=0.058  Sum_probs=194.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRI--EPHYHRAHHRL  338 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l  338 (608)
                      .+...|..+-..|.+.|++++|..+|+++.+.... +...|..+...|.+.|++++|+..|+++...  .|+ ...|..+
T Consensus       470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsL  548 (1060)
T PLN03218        470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNAL  548 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Confidence            45555555666666666666666666665544321 3455566666666666666666666665442  232 4556666


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCC---CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGP---EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQA  415 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la  415 (608)
                      ...|.+.|++++|.+.|.+...   .+.|+       ...+..+...+.+.|++++|.+.|+.+.+.+.......|..+.
T Consensus       549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI  621 (1060)
T PLN03218        549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-------HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV  621 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence            6666666666666666665532   02333       2344445555666677777777777777666555556677777


Q ss_pred             HHHHHcCChHHHHHHhhcCCCC--CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Q 040048          416 EALLKLHKHQEADETLKNGPNF--DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-NKEVNMVM  492 (608)
Q Consensus       416 ~~~~~~g~~~eA~~~l~~al~~--~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  492 (608)
                      ..|.+.|++++|+.+|+++...  .|+           ...|..+...+...|++++|..+++++.+.... +...    
T Consensus       622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD-----------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t----  686 (1060)
T PLN03218        622 NSCSQKGDWDFALSIYDDMKKKGVKPD-----------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS----  686 (1060)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----
Confidence            7777777777777777666543  232           556666777777777777777777776654321 1222    


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHH
Q 040048          493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--RPGYSKA  568 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a  568 (608)
                              +..+...|.+.|++++|+.+|+++...  .| +...|..+...|.+.|++++|++.|++....  .| +...
T Consensus       687 --------ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~T  756 (1060)
T PLN03218        687 --------YSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTIT  756 (1060)
T ss_pred             --------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHH
Confidence                    246778888888888888888887653  33 4677888888888888888888888887654  34 3556


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          569 RLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       569 ~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      |..+...+.+.|++++|.++|.++++.
T Consensus       757 y~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        757 YSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            777778888888888888888888774

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.78  E-value=2.1e-16  Score=178.03  Aligned_cols=322  Identities=11%  Similarity=0.026  Sum_probs=250.7

Q ss_pred             CcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C-----------------------------
Q 040048          248 SAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDP--N-----------------------------  296 (608)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p--~-----------------------------  296 (608)
                      .++|..++..+.. .+...|..+...|.+.|++++|+.+|++.++..+  +                             
T Consensus       174 ~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~  252 (697)
T PLN03081        174 LIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK  252 (697)
T ss_pred             HHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            3445556666533 4677888899999999999999999999876432  1                             


Q ss_pred             -----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC-CCchhHHHH
Q 040048          297 -----KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE-ADQVDIAKA  370 (608)
Q Consensus       297 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~  370 (608)
                           +..++..+...|.+.|++++|...|++..   +.+...|..+...|...|++++|+..|++.... +.|+.    
T Consensus       253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~----  325 (697)
T PLN03081        253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ----  325 (697)
T ss_pred             hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----
Confidence                 22345667788999999999999998764   456789999999999999999999999887541 34443    


Q ss_pred             HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048          371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIG  450 (608)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~  450 (608)
                         ..+..+...+.+.|+++.|...+..+++.+......++..+...|.+.|++++|...|++..+  |+          
T Consensus       326 ---~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d----------  390 (697)
T PLN03081        326 ---FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN----------  390 (697)
T ss_pred             ---HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC----------
Confidence               356667777888899999999999999887666667888999999999999999999998865  22          


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH----------------H-------HHHHHHHHH
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQ--DSNNKEVNMVMRKA----------------K-------GVAAARSNG  505 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~----------------~-------~~~~~~~lg  505 (608)
                       ...|..+...|...|+.++|++.|++....  .|+......++...                .       ....|..+.
T Consensus       391 -~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li  469 (697)
T PLN03081        391 -LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI  469 (697)
T ss_pred             -eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence             567888999999999999999999998763  34443333222110                0       023456677


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS  585 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A  585 (608)
                      ..+.+.|++++|.+.+++.- ..| +..+|..+...+...|+++.|...+++++++.|++...|..++.+|.+.|++++|
T Consensus       470 ~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        470 ELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence            88888888888888887652 334 4667888888888999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHh
Q 040048          586 MQDYEILKKE  595 (608)
Q Consensus       586 ~~~~~~al~l  595 (608)
                      .+.++...+.
T Consensus       548 ~~v~~~m~~~  557 (697)
T PLN03081        548 AKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHc
Confidence            9999887754

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=3.5e-18  Score=161.17  Aligned_cols=250  Identities=14%  Similarity=0.046  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      .--..+|.||++.|-+.+|...++.+++..| .++.+..++.+|.+..+...|+..|.+.++..|.+...+..++.++..
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence            3345699999999999999999999999887 478889999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH  424 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~  424 (608)
                      ++++++|+++|+.+++ .+|.+.                                         +...-+|.-|+..++.
T Consensus       303 m~~~~~a~~lYk~vlk-~~~~nv-----------------------------------------EaiAcia~~yfY~~~P  340 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLK-LHPINV-----------------------------------------EAIACIAVGYFYDNNP  340 (478)
T ss_pred             HHhHHHHHHHHHHHHh-cCCccc-----------------------------------------eeeeeeeeccccCCCh
Confidence            9999999999999998 888772                                         2222334555566666


Q ss_pred             HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048          425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN  504 (608)
Q Consensus       425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l  504 (608)
                      +-|+.+|++++++...          +++++.++|.+.+..++++-++..|++++....+....         ++.|+++
T Consensus       341 E~AlryYRRiLqmG~~----------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a---------aDvWYNl  401 (478)
T KOG1129|consen  341 EMALRYYRRILQMGAQ----------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA---------ADVWYNL  401 (478)
T ss_pred             HHHHHHHHHHHHhcCC----------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh---------hhhhhcc
Confidence            6666666666665443          37888888888888888888888888888766543322         2345588


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      |.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..|-...|+-.+..++++.+-
T Consensus       402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s  473 (478)
T KOG1129|consen  402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS  473 (478)
T ss_pred             ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence            988889999999999999999999999999999999999999999999999999888888877777766543

>PLN02789 farnesyltranstransferase

Probab=99.78  E-value=1.1e-16  Score=160.24  Aligned_cols=242  Identities=15%  Similarity=0.047  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      .+++-.+-.++...+.+++|+..+.++|.++|++..+|..++.++..+| ++++++..++++++.+|++..+|+..+.++
T Consensus        37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            3455445556677889999999999999999999999999999999998 679999999999999999999999999888


Q ss_pred             HHcCCH--HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          343 LRLGEV--EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       343 ~~~g~~--~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      ..+|+.  ++++.++++++. .+|.+                                                      
T Consensus       117 ~~l~~~~~~~el~~~~kal~-~dpkN------------------------------------------------------  141 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILS-LDAKN------------------------------------------------------  141 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHH-hCccc------------------------------------------------------
Confidence            777763  445555555544 33332                                                      


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                                                     ..+|..++.++...|+++++++.+.++++.+|.+..+|.          
T Consensus       142 -------------------------------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~----------  180 (320)
T PLN02789        142 -------------------------------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN----------  180 (320)
T ss_pred             -------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH----------
Confidence                                           788888999999999999999999999999999998886          


Q ss_pred             HHHHHHHHHHc---CCH----HHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048          501 ARSNGNALFKQ---AKF----SEAAAAYGDGLGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       501 ~~~lg~~~~~~---g~~----~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~  569 (608)
                        .++.++...   |.+    ++++.+..++|..+|++..+|..++.++..    +++..+|+..+.+++...|.++.++
T Consensus       181 --~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al  258 (320)
T PLN02789        181 --QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL  258 (320)
T ss_pred             --HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence              666666554   323    578889999999999999999999999988    4567889999999999999999999


Q ss_pred             HHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCCHHHH
Q 040048          570 LRRADCFAKIE------------------KWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       570 ~~la~~~~~~g------------------~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      -.|+.+|....                  ..++|...++..-+.||=-...|
T Consensus       259 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw  310 (320)
T PLN02789        259 SDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW  310 (320)
T ss_pred             HHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence            99999998642                  34778888888877777444433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.77  E-value=3.4e-15  Score=170.78  Aligned_cols=321  Identities=10%  Similarity=0.067  Sum_probs=260.8

Q ss_pred             CcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          248 SAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      ..++..+++.+.. .+...|..+-..+...|++++|..+|+++.+.... +...|..+..+|.+.|+.++|...|+++.+
T Consensus       422 ~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~  500 (1060)
T PLN03218        422 VKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN  500 (1060)
T ss_pred             HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            3345555555543 67788888888999999999999999998876433 467788899999999999999999999987


Q ss_pred             hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc--
Q 040048          327 IEP-HYHRAHHRLANLYLRLGEVEKAIYHFKHAGP-EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG--  402 (608)
Q Consensus       327 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--  402 (608)
                      ... .+...|..+...|.+.|++++|+..|.+... .+.|+       ...|..+...+.+.|++++|...+.++...  
T Consensus       501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~  573 (1060)
T PLN03218        501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-------RVVFNALISACGQSGAVDRAFDVLAEMKAETH  573 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence            543 2578899999999999999999999988753 13454       356777778888899999999999999763  


Q ss_pred             CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 040048          403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-  481 (608)
Q Consensus       403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  481 (608)
                      ........|..+...|.+.|++++|.++|+.+.+....         .+...|..+...|.+.|++++|+.+|.+..+. 
T Consensus       574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~---------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G  644 (1060)
T PLN03218        574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK---------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG  644 (1060)
T ss_pred             CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            22222467888899999999999999999988776432         13788999999999999999999999998875 


Q ss_pred             -CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          482 -DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-PYNSVLLCNRAACRSKLGQFEKAIEDCNAAL  559 (608)
Q Consensus       482 -~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  559 (608)
                       .|+. ..+            ..+...+.+.|++++|.++++++.+.. +.+...|..+...|.+.|++++|++.|++..
T Consensus       645 v~PD~-~Ty------------nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        645 VKPDE-VFF------------SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             CCCCH-HHH------------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             3442 222            367789999999999999999999864 3467899999999999999999999999987


Q ss_pred             hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Q 040048          560 NV--RPGYSKARLRRADCFAKIEKWEASMQDYEILKKE--APDD  599 (608)
Q Consensus       560 ~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~  599 (608)
                      +.  .| +...|..+...|.+.|++++|++.|++..+.  .|+.
T Consensus       712 ~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~  754 (1060)
T PLN03218        712 SIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT  754 (1060)
T ss_pred             HcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence            64  44 4678999999999999999999999988764  4553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.77  E-value=8e-17  Score=167.89  Aligned_cols=251  Identities=20%  Similarity=0.150  Sum_probs=197.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI------  327 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------  327 (608)
                      .-..+...+|..|..+|+|++|+..+++++++        .|.-......+|.+|..++++.+|+..|++++.+      
T Consensus       197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            33456777999999999999999999999998        5555556667999999999999999999999985      


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048          328 --EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD  405 (608)
Q Consensus       328 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  405 (608)
                        +|..+.++.+||.+|...|++++|..++++++.                                  ++++...    
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------------I~~~~~~----  318 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------------IYEKLLG----  318 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------------HHHHhhc----
Confidence              344466899999999999999999999998865                                  1111000    


Q ss_pred             ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN  485 (608)
Q Consensus       406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  485 (608)
                                                    ...|+          ....+..++.++..++++++|+.++++++++..+-
T Consensus       319 ------------------------------~~~~~----------v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  319 ------------------------------ASHPE----------VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             ------------------------------cChHH----------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence                                          00111          15667778888888999999999999888754311


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          486 KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--------PYNSVLLCNRAACRSKLGQFEKAIEDCNA  557 (608)
Q Consensus       486 ~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~  557 (608)
                      +....    ...+..+.++|.+|..+|+|++|.++|++|+.+.        +.....++++|..|.+++++.+|...|.+
T Consensus       359 ~g~~~----~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  359 PGEDN----VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             ccccc----hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            11100    0113345699999999999999999999999863        33467889999999999999999999999


Q ss_pred             HHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          558 ALNV-------RPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       558 al~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      ++.+       .|+....|.+||.+|..+|++++|+++.++++.
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            9876       344567889999999999999999999999984

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.75  E-value=8.1e-16  Score=157.66  Aligned_cols=314  Identities=17%  Similarity=0.158  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      ..++..+.-++..++|...+...+.+++..|++++.+...|..+..+|+-++|..+...++..++.....|+.+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            46778888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH  424 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~  424 (608)
                      ..+|++|+++|..|+. ++|++      ...+..++....++++++.....-...++..|.. ...|...+..+...|++
T Consensus        88 dK~Y~eaiKcy~nAl~-~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALK-IEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-RASWIGFAVAQHLLGEY  159 (700)
T ss_pred             hhhHHHHHHHHHHHHh-cCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999 99999      8899999999999999999999999999998876 36788899999999999


Q ss_pred             HHHHHHhhcCCCCC---CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          425 QEADETLKNGPNFD---VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       425 ~eA~~~l~~al~~~---p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      ..|...++...+..   |+...     ....+.......++...|.+++|++.+..--...-+.....            
T Consensus       160 ~~A~~il~ef~~t~~~~~s~~~-----~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~------------  222 (700)
T KOG1156|consen  160 KMALEILEEFEKTQNTSPSKED-----YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE------------  222 (700)
T ss_pred             HHHHHHHHHHHHhhccCCCHHH-----HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh------------
Confidence            99998876655433   22111     12367777888889999999999888765433222222222            


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH----------------------
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI-EDCNAA----------------------  558 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a----------------------  558 (608)
                      ...|.++.+.+++++|+..|...+..+|++...+..+-.++.+-.+--+++ ..|...                      
T Consensus       223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee  302 (700)
T KOG1156|consen  223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE  302 (700)
T ss_pred             hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence            277899999999999999999999999999877766655553111111111 111111                      


Q ss_pred             ----------------------------------------Hh-----cC--------------CCC--HHHHHHHHHHHH
Q 040048          559 ----------------------------------------LN-----VR--------------PGY--SKARLRRADCFA  577 (608)
Q Consensus       559 ----------------------------------------l~-----~~--------------p~~--~~a~~~la~~~~  577 (608)
                                                              +.     +.              |-.  ...++.++.-+.
T Consensus       303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D  382 (700)
T KOG1156|consen  303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD  382 (700)
T ss_pred             hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence                                                    00     00              111  234577889999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          578 KIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      ..|+++.|..++..|+...|.-.+..
T Consensus       383 ~~g~~~~A~~yId~AIdHTPTliEly  408 (700)
T KOG1156|consen  383 KLGDYEVALEYIDLAIDHTPTLIELY  408 (700)
T ss_pred             HcccHHHHHHHHHHHhccCchHHHHH
Confidence            99999999999999999999887765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=8.5e-15  Score=138.61  Aligned_cols=300  Identities=15%  Similarity=0.068  Sum_probs=226.4

Q ss_pred             cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHH
Q 040048          234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-----ASYRSNKTA  306 (608)
Q Consensus       234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~la~  306 (608)
                      ..|-.++.+-.++..+.|..++..++.  +...++.+.+|+.+...|+.+.||.+-+..++ .|+-     ..+...+|.
T Consensus        37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~  115 (389)
T COG2956          37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR  115 (389)
T ss_pred             HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence            345566666667777788888888865  45678999999999999999999998877554 4554     357889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHh
Q 040048          307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRT  386 (608)
Q Consensus       307 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~  386 (608)
                      =|+..|-++.|...|...++...--..+...|..+|....+|++|++.-++... +.+... ....              
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~-~~eI--------------  179 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTY-RVEI--------------  179 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccc-hhHH--------------
Confidence            999999999999999999876666678999999999999999999999998887 666552 1111              


Q ss_pred             hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC
Q 040048          387 RDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG  466 (608)
Q Consensus       387 ~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g  466 (608)
                                           ...|..++..+....+++.|+..+.++++.+|+.          ..+-+.+|.++...|
T Consensus       180 ---------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----------vRAsi~lG~v~~~~g  228 (389)
T COG2956         180 ---------------------AQFYCELAQQALASSDVDRARELLKKALQADKKC----------VRASIILGRVELAKG  228 (389)
T ss_pred             ---------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----------eehhhhhhHHHHhcc
Confidence                                 3456667777777778888888888888888875          677778888999999


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC
Q 040048          467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG  546 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  546 (608)
                      +|+.|++.++.+++.+|+......           -.+-.+|...|+.++.+..+.++++..+. +.+...++..-....
T Consensus       229 ~y~~AV~~~e~v~eQn~~yl~evl-----------~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~  296 (389)
T COG2956         229 DYQKAVEALERVLEQNPEYLSEVL-----------EMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQE  296 (389)
T ss_pred             chHHHHHHHHHHHHhChHHHHHHH-----------HHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhh
Confidence            999999999988888887643322           36778888899999999988888888765 445556666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 040048          547 QFEKAIEDCNAALNVRPGYSKARLRRADCFA--KIEKWEASMQDYEILK  593 (608)
Q Consensus       547 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~~g~~~~A~~~~~~al  593 (608)
                      -.+.|..++.+-+...|+.-..+..+..-..  ..|...+....++..+
T Consensus       297 G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         297 GIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             ChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence            6788888888888888875433332222221  2344555555555554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.73  E-value=1.1e-15  Score=159.54  Aligned_cols=283  Identities=19%  Similarity=0.146  Sum_probs=226.1

Q ss_pred             CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C
Q 040048          261 RMDPETLKIMGNEDYKA-----------GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-E  328 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~-----------g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~  328 (608)
                      ...+..+..+|.+|-.+           -...++++.++++++.+|.|+.+.++++.-|...++.+.|....++++++ .
T Consensus       430 ~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~  509 (799)
T KOG4162|consen  430 HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR  509 (799)
T ss_pred             hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence            35677888888877633           34568999999999999999999999999999999999999999999999 4


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHH--------------HHH-------HHHHH----------
Q 040048          329 PHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAK--------------AKS-------LQAHL----------  377 (608)
Q Consensus       329 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~--------------~~~-------~~~~~----------  377 (608)
                      .+++.+|..++.++...+++.+|+...+.++. -.+++...              ...       +..|-          
T Consensus       510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~-E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~  588 (799)
T KOG4162|consen  510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALE-EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD  588 (799)
T ss_pred             CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence            56689999999999999999999999998877 33332100              000       00000          


Q ss_pred             ------HHhHHHHHhhcHHHHHHHHHHHHHc--------C-------------CCC----hHHHHHHHHHHHHHcCChHH
Q 040048          378 ------NKCTDAKRTRDWNTLIQETRAAIAG--------G-------------ADS----APQIYALQAEALLKLHKHQE  426 (608)
Q Consensus       378 ------~~~~~~~~~~~~~~A~~~~~~al~~--------~-------------~~~----~~~~~~~la~~~~~~g~~~e  426 (608)
                            ..+.......+..+++..+.++...        +             |+.    ...+|...+..+...+..++
T Consensus       589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~  668 (799)
T KOG4162|consen  589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE  668 (799)
T ss_pred             hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence                  0000111112333333333333211        1             111    13467788999999999999


Q ss_pred             HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048          427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN  506 (608)
Q Consensus       427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~  506 (608)
                      |..++.++-.++|..          +..|+..|.++...|++++|.+.|..++.++|++.....            .+|.
T Consensus       669 a~~CL~Ea~~~~~l~----------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~------------Ala~  726 (799)
T KOG4162|consen  669 ARSCLLEASKIDPLS----------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT------------ALAE  726 (799)
T ss_pred             HHHHHHHHHhcchhh----------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH------------HHHH
Confidence            999999999998864          899999999999999999999999999999999999876            8999


Q ss_pred             HHHHcCCHHHHHH--HHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048          507 ALFKQAKFSEAAA--AYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       507 ~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  566 (608)
                      ++.+.|+..-|..  .+..+++++|.+.++|+.+|.++.+.|+.++|.++|..|+++.+.+|
T Consensus       727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999888888  99999999999999999999999999999999999999999988765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.72  E-value=2.3e-14  Score=148.66  Aligned_cols=316  Identities=11%  Similarity=-0.090  Sum_probs=231.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH  336 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  336 (608)
                      .|..+.++..+|..+...|+.++|...+.++....|.+   ....+..+.++...|++++|+..++++++.+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            46778899999999999999999999999999888765   445778899999999999999999999999999988777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCC---CCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPE---ADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL  413 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  413 (608)
                      . +..+...|++..+.....+++..   ..|..      ...+..++.++...|++++|+..++++++..|++ ...+..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~~  153 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVHA  153 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHHH
Confidence            5 55555555544444444443321   34443      5566678889999999999999999999999988 467888


Q ss_pred             HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048          414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR  493 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  493 (608)
                      +|.++...|++++|+.++++++...|....      .....+..+|.++...|++++|+..|++++...|..........
T Consensus       154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~  227 (355)
T cd05804         154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSM------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD  227 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCcc------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence            999999999999999999999998775211      11456778999999999999999999999876663222211000


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHH---HHHhhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAAAA---YGDGLGLD--PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG----  564 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~---~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----  564 (608)
                      .       ..+...+...|....+..+   ........  +.........+.++...|+.++|...++.+......    
T Consensus       228 ~-------~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  300 (355)
T cd05804         228 A-------ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDN  300 (355)
T ss_pred             H-------HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCch
Confidence            0       0111222333322222222   11111111  122233346888889999999999999887664322    


Q ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          565 -----YSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       565 -----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                           ........|.++...|++++|.+.+..++.+.
T Consensus       301 ~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         301 KQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             hhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                 24566788999999999999999999999764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03077 Protein ECB2; Provisional

Probab=99.71  E-value=9.4e-15  Score=168.69  Aligned_cols=317  Identities=11%  Similarity=0.017  Sum_probs=188.0

Q ss_pred             CCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh--------------------------
Q 040048          247 SSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISI--DPNKA--------------------------  298 (608)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~--------------------------  298 (608)
                      ..++|..++..+. ..+...|..+...|.+.|++++|+.+|++....  .|+..                          
T Consensus       338 ~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~  416 (857)
T PLN03077        338 SWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE  416 (857)
T ss_pred             CHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence            3345555555543 345566777777777777777777777766443  24332                          


Q ss_pred             --------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHH
Q 040048          299 --------SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA  370 (608)
Q Consensus       299 --------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~  370 (608)
                              .++..+...|.+.|++++|.+.|++..+   .+...|..+...|...|++++|+..|++.+..+.|+.....
T Consensus       417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~  493 (857)
T PLN03077        417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI  493 (857)
T ss_pred             HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence                    1223344445555555555555554432   23345555666666666666666666665543444432211


Q ss_pred             HHHHHHH----------------------------HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048          371 KSLQAHL----------------------------NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH  422 (608)
Q Consensus       371 ~~~~~~~----------------------------~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g  422 (608)
                      ..+.++.                            .+...|.+.|++++|...|+..   .+  ....|..+...|...|
T Consensus       494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~--d~~s~n~lI~~~~~~G  568 (857)
T PLN03077        494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK--DVVSWNILLTGYVAHG  568 (857)
T ss_pred             HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CC--ChhhHHHHHHHHHHcC
Confidence            1111111                            1123444555555555555543   11  1345555555666666


Q ss_pred             ChHHHHHHhhcCCC--CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          423 KHQEADETLKNGPN--FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       423 ~~~eA~~~l~~al~--~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      +.++|+.+|++..+  ..|+           ...+..+-..+...|++++|..+|+...+..+-.+..          ..
T Consensus       569 ~~~~A~~lf~~M~~~g~~Pd-----------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~----------~~  627 (857)
T PLN03077        569 KGSMAVELFNRMVESGVNPD-----------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL----------KH  627 (857)
T ss_pred             CHHHHHHHHHHHHHcCCCCC-----------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch----------HH
Confidence            66666666655443  2232           3334444445555566666666666555332222221          22


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      |..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.|....++++++.|++...|..++.+|...|
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g  705 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG  705 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence            347788888889999998888875 34454 6677777777788888888888888899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 040048          581 KWEASMQDYEILKKE  595 (608)
Q Consensus       581 ~~~~A~~~~~~al~l  595 (608)
                      +|++|.+..+...+.
T Consensus       706 ~~~~a~~vr~~M~~~  720 (857)
T PLN03077        706 KWDEVARVRKTMREN  720 (857)
T ss_pred             ChHHHHHHHHHHHHc
Confidence            999999888877653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.71  E-value=2e-15  Score=160.75  Aligned_cols=313  Identities=13%  Similarity=0.008  Sum_probs=248.8

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHF  355 (608)
Q Consensus       276 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  355 (608)
                      .+.+...|+..|-+++++++..+.+|..+|.+|...-+...|..+|.+|.++++.+..++-..+..|....+++.|....
T Consensus       470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            34558889999999999999999999999999998889999999999999999999999999999999999999998886


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048          356 KHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP  435 (608)
Q Consensus       356 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al  435 (608)
                      -.+-+ ..|...    ....|..+|..+...++..+++..++.++..+|.+ ...|..+|.+|...|++..|+..|.++.
T Consensus       550 l~~~q-ka~a~~----~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  550 LRAAQ-KAPAFA----CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             HHHhh-hchHHH----HHhhhhhccccccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            55544 444332    23344458888888899999999999999998887 4788889999999999999999999999


Q ss_pred             CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---------------------------
Q 040048          436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV---------------------------  488 (608)
Q Consensus       436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------------------  488 (608)
                      .++|.+          ....+..+.+....|+|.+|+..+...+.........                           
T Consensus       624 ~LrP~s----------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~  693 (1238)
T KOG1127|consen  624 LLRPLS----------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF  693 (1238)
T ss_pred             hcCcHh----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            998875          5556667777777777777777766655432211110                           


Q ss_pred             ----------------------HHHHHHH--------------------------------------------------H
Q 040048          489 ----------------------NMVMRKA--------------------------------------------------K  496 (608)
Q Consensus       489 ----------------------~~~l~~~--------------------------------------------------~  496 (608)
                                            |.++...                                                  .
T Consensus       694 ~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~  773 (1238)
T KOG1127|consen  694 FEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI  773 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence                                  0000000                                                  0


Q ss_pred             HHHHHHHHHHHHHH--------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 040048          497 GVAAARSNGNALFK--------QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA  568 (608)
Q Consensus       497 ~~~~~~~lg~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a  568 (608)
                      ....|+++|.-|+.        +.+...|+.++.++++++.++...|..||.+ ...|++.-|..+|-+.+...|.....
T Consensus       774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~  852 (1238)
T KOG1127|consen  774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQ  852 (1238)
T ss_pred             ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhh
Confidence            02235777777665        2334579999999999999999999999988 66689999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          569 RLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       569 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      |.++|.++.+..+++-|...|.++..++|.|...|.+
T Consensus       853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG  889 (1238)
T KOG1127|consen  853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG  889 (1238)
T ss_pred             eeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence            9999999999999999999999999999999887754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.3e-16  Score=153.68  Aligned_cols=272  Identities=17%  Similarity=0.176  Sum_probs=225.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.++..|...+..++..|+|++|+-.+++.++++|.....+...+.|+..+++..+|...++        +..++     
T Consensus        80 pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~-----  146 (486)
T KOG0550|consen   80 PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY-----  146 (486)
T ss_pred             ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh-----
Confidence            56688999999999999999999999999999999999999999999999999999988887        11111     


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                            ....|+..+++.+.    .+...+....+.+..+.++...++++.|+...-..+++++.+. ..+...|.++..
T Consensus       147 ------~~anal~~~~~~~~----s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-~al~vrg~~~yy  215 (486)
T KOG0550|consen  147 ------KAANALPTLEKLAP----SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-EALYVRGLCLYY  215 (486)
T ss_pred             ------HHhhhhhhhhcccc----cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-HHHHhccccccc
Confidence                  22334444444332    2222244456677788888889999999999988888888874 667777999999


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccc--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRF--FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV  498 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  498 (608)
                      ..+.+.|+..|++++.++|+....-  +........+...|.-.++.|++.+|.+.|.++|.++|++.....        
T Consensus       216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na--------  287 (486)
T KOG0550|consen  216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA--------  287 (486)
T ss_pred             ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH--------
Confidence            9999999999999999999854321  112234677788999999999999999999999999999877653        


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                      ..|.++|.+...+|+..+|+..++.++++++....++...|.|+..+++|++|+++|+++++...+
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            335699999999999999999999999999999999999999999999999999999999998765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.71  E-value=1.1e-16  Score=162.40  Aligned_cols=263  Identities=16%  Similarity=0.134  Sum_probs=195.1

Q ss_pred             cccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 040048          236 YNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR  313 (608)
Q Consensus       236 y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~  313 (608)
                      |..+..+...|...+|.-++.+..  .|.++++|..||.+....++-..|+..++++++++|++..++..||.+|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            344444444455555555555543  378999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH
Q 040048          314 LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI  393 (608)
Q Consensus       314 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  393 (608)
                      -.+|+.++.+-|...|.+...  ..+.   ..+++..-    ...   .++..                           
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l--~~a~---~~~~~~~~----~s~---~~~~~---------------------------  409 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHL--VSAG---ENEDFENT----KSF---LDSSH---------------------------  409 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhc--cccC---ccccccCC----cCC---CCHHH---------------------------
Confidence            999999999999988865221  0000   00010000    000   11111                           


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048          394 QETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA  473 (608)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (608)
                                       +..+...|+             .+....|..        .++++...||.+|...|+|++|+.
T Consensus       410 -----------------l~~i~~~fL-------------eaa~~~~~~--------~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  410 -----------------LAHIQELFL-------------EAARQLPTK--------IDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             -----------------HHHHHHHHH-------------HHHHhCCCC--------CChhHHhhhHHHHhcchHHHHHHH
Confidence                             011111111             111111210        127888899999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          474 AIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE  553 (608)
Q Consensus       474 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  553 (608)
                      +|+.||...|++...|.            .||-.+....+.++|+..|++|+++.|....++++||.++..+|.|++|++
T Consensus       452 cf~~AL~v~Pnd~~lWN------------RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWN------------RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HHHHHHhcCCchHHHHH------------HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            99999999999999987            899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC----------CHHHHHHHHHHHHHcCCHHHHHH
Q 040048          554 DCNAALNVRPG----------YSKARLRRADCFAKIEKWEASMQ  587 (608)
Q Consensus       554 ~~~~al~~~p~----------~~~a~~~la~~~~~~g~~~~A~~  587 (608)
                      +|-.||.+.+.          +..+|-.|=.++..+++.+-+..
T Consensus       520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            99999998654          12467666677777777764443

>PLN02789 farnesyltranstransferase

Probab=99.70  E-value=1.3e-15  Score=152.42  Aligned_cols=215  Identities=13%  Similarity=0.050  Sum_probs=181.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 040048          278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG-EVEKAIYHFK  356 (608)
Q Consensus       278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~  356 (608)
                      ++|.+|..+|+.++.                 ..+++++|+..+.++|+++|++..+|...+.++..+| ++++++..+.
T Consensus        34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~   96 (320)
T PLN02789         34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE   96 (320)
T ss_pred             HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            567777777776554                 4567889999999999999999999999999999888 5788888887


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048          357 HAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN  436 (608)
Q Consensus       357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  436 (608)
                      +++. .+|.+                                                                      
T Consensus        97 ~~i~-~npkn----------------------------------------------------------------------  105 (320)
T PLN02789         97 DVAE-DNPKN----------------------------------------------------------------------  105 (320)
T ss_pred             HHHH-HCCcc----------------------------------------------------------------------
Confidence            7766 44444                                                                      


Q ss_pred             CCCcccccccCCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048          437 FDVDETTRFFGPIGNANLLVVRAQVNLACGRF--EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF  514 (608)
Q Consensus       437 ~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~  514 (608)
                                     ..+|..++.++...|+.  ++++.+++++++.+|.+..+|.            .+|.++...|++
T Consensus       106 ---------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~------------~R~w~l~~l~~~  158 (320)
T PLN02789        106 ---------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS------------HRQWVLRTLGGW  158 (320)
T ss_pred             ---------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH------------HHHHHHHHhhhH
Confidence                           55666666666666653  6789999999999999999987            889999999999


Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHH
Q 040048          515 SEAAAAYGDGLGLDPYNSVLLCNRAACRSKL---GQF----EKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWE  583 (608)
Q Consensus       515 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~  583 (608)
                      ++|++++.++|+.+|.+..+|+.++.++..+   |.+    ++++.+..++|.++|++..+|..++.++..    +++..
T Consensus       159 ~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~  238 (320)
T PLN02789        159 EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP  238 (320)
T ss_pred             HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence            9999999999999999999999999998876   333    578999999999999999999999999988    45677


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          584 ASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       584 ~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|++.+.++++..|.+..+...|.
T Consensus       239 ~~~~~~~~~~~~~~~s~~al~~l~  262 (320)
T PLN02789        239 EVSSVCLEVLSKDSNHVFALSDLL  262 (320)
T ss_pred             hHHHHHHHhhcccCCcHHHHHHHH
Confidence            899999999999999888776654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.69  E-value=1.1e-14  Score=164.29  Aligned_cols=304  Identities=13%  Similarity=0.039  Sum_probs=217.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC--------
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIE--PH--------  330 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~--------  330 (608)
                      ..+...+..+...|.+.|++++|..+|++..+  | +...|..+...|.+.|++++|+..|+++++..  |+        
T Consensus       155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll  231 (697)
T PLN03081        155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML  231 (697)
T ss_pred             CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence            45788899999999999999999999998754  3 56789999999999999999999999987643  22        


Q ss_pred             --------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHH
Q 040048          331 --------------------------YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK  384 (608)
Q Consensus       331 --------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~  384 (608)
                                                +..++..+...|.+.|++++|...|++...    .+      ...|..+...+.
T Consensus       232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~------~vt~n~li~~y~  301 (697)
T PLN03081        232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KT------TVAWNSMLAGYA  301 (697)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CC------hhHHHHHHHHHH
Confidence                                      122455677889999999999999988643    23      456778888899


Q ss_pred             HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048          385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA  464 (608)
Q Consensus       385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~  464 (608)
                      +.|++++|+..|+++...+.......+..+...+...|++++|...+..+++....         .+..++..+...|.+
T Consensus       302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~---------~d~~~~~~Li~~y~k  372 (697)
T PLN03081        302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP---------LDIVANTALVDLYSK  372 (697)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC---------CCeeehHHHHHHHHH
Confidence            99999999999999988765555678999999999999999999999888765422         136778889999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCC------------
Q 040048          465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPY------------  530 (608)
Q Consensus       465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~------------  530 (608)
                      .|++++|...|++..+  | +...|.            .+...|.+.|+.++|+++|++....  .|+            
T Consensus       373 ~G~~~~A~~vf~~m~~--~-d~~t~n------------~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  437 (697)
T PLN03081        373 WGRMEDARNVFDRMPR--K-NLISWN------------ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR  437 (697)
T ss_pred             CCCHHHHHHHHHhCCC--C-CeeeHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            9999999999998754  2 222332            4445555555555555555554432  221            


Q ss_pred             -----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          531 -----------------------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ  587 (608)
Q Consensus       531 -----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~  587 (608)
                                             +...|..+..+|.+.|++++|.+.+++. ...| +...|..+...+...|+++.|..
T Consensus       438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~  515 (697)
T PLN03081        438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRL  515 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHH
Confidence                                   1234444555555555555555555432 1122 23456666666666666666666


Q ss_pred             HHHHHHHhCCCCHHHH
Q 040048          588 DYEILKKEAPDDEEVD  603 (608)
Q Consensus       588 ~~~~al~l~P~~~~~~  603 (608)
                      .+++++++.|++...+
T Consensus       516 ~~~~l~~~~p~~~~~y  531 (697)
T PLN03081        516 AAEKLYGMGPEKLNNY  531 (697)
T ss_pred             HHHHHhCCCCCCCcch
Confidence            6666666666654433

>PLN03077 Protein ECB2; Provisional

Probab=99.68  E-value=5.3e-14  Score=162.50  Aligned_cols=332  Identities=16%  Similarity=0.078  Sum_probs=209.1

Q ss_pred             CCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------
Q 040048          247 SSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISI--DPN----------------------------  296 (608)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~----------------------------  296 (608)
                      ..++|..++..+. ..|...|..+-..|.+.|++++|+.+|.+....  .|+                            
T Consensus       237 ~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~  315 (857)
T PLN03077        237 DVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV  315 (857)
T ss_pred             CHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            3445555665553 346667888888888888888888888887653  333                            


Q ss_pred             ------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-CCCchhHHH
Q 040048          297 ------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP-EADQVDIAK  369 (608)
Q Consensus       297 ------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~p~~~~~  369 (608)
                            +...+..+...|.+.|++++|...|+++..   .+...|..+...|.+.|++++|++.|++... .+.|+.   
T Consensus       316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~---  389 (857)
T PLN03077        316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE---  389 (857)
T ss_pred             HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc---
Confidence                  334455666667777777777777776532   2345677777777777777777777776532 133443   


Q ss_pred             HHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048          370 AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI  449 (608)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~  449 (608)
                          ..+..+...+...|+++.+...+..+++.+......++..+...|.+.|++++|.+.|++..+.  +         
T Consensus       390 ----~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d---------  454 (857)
T PLN03077        390 ----ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--D---------  454 (857)
T ss_pred             ----eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--C---------
Confidence                2233333455667788888888888887776666778888999999999999999999987652  2         


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHH---------------------------------
Q 040048          450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-DSNNKEVNMVMRKA---------------------------------  495 (608)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~---------------------------------  495 (608)
                        ...|..+...|...|++++|+..|++.+.. .|+.......+.-.                                 
T Consensus       455 --~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~  532 (857)
T PLN03077        455 --VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD  532 (857)
T ss_pred             --eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence              557788888999999999999999998753 33333222222100                                 


Q ss_pred             -------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          496 -------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRAACRSKLGQFEKAIED  554 (608)
Q Consensus       496 -------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~  554 (608)
                                         ....+|..+...|...|+.++|+.+|++..+.  .|+ ...+..+-..+.+.|++++|.++
T Consensus       533 ~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~  611 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEY  611 (857)
T ss_pred             HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHH
Confidence                               01223445555555666666666666655542  233 33344444455566666666666


Q ss_pred             HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          555 CNAALNV---RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       555 ~~~al~~---~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      |+...+.   .| +...|..+..++.+.|++++|.+.+++. .+.|+ ..+|..|
T Consensus       612 f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aL  663 (857)
T PLN03077        612 FHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGAL  663 (857)
T ss_pred             HHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHH
Confidence            6665532   22 2355666666666777777776666654 23443 4444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.68  E-value=6e-16  Score=164.72  Aligned_cols=373  Identities=12%  Similarity=0.029  Sum_probs=284.1

Q ss_pred             ccccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCc---------------chhHHHHhhhC
Q 040048          200 SSGVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSA---------------EPTSLCRALST  260 (608)
Q Consensus       200 ~~A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~---------------~a~~~~~~~~~  260 (608)
                      ..|-.++-+++.+++.++.+  .||.+|..-  -..|...|+++..+++.+...               ++...+-....
T Consensus       475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q  554 (1238)
T KOG1127|consen  475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ  554 (1238)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence            33555577888899988877  899999887  456778899999888876533               22222211111


Q ss_pred             C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048          261 R----MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH  336 (608)
Q Consensus       261 ~----~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  336 (608)
                      .    ..-+.|..+|..|...+++..|+..|+.++..+|++...|..+|.+|...|++..|++.|.++..++|.+..+.+
T Consensus       555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f  634 (1238)
T KOG1127|consen  555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF  634 (1238)
T ss_pred             hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence            1    223467889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc-------CCCChHH
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG-------GADSAPQ  409 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~  409 (608)
                      ..+.+....|+|.+|+..+...+................++..+..+...|-+.++...+++.++.       .-.....
T Consensus       635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~  714 (1238)
T KOG1127|consen  635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL  714 (1238)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999999998876222222334445566666666676677777777777666543       1111122


Q ss_pred             HHHHHHHHHHHc---C--------------------Ch---H---HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH
Q 040048          410 IYALQAEALLKL---H--------------------KH---Q---EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ  460 (608)
Q Consensus       410 ~~~~la~~~~~~---g--------------------~~---~---eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~  460 (608)
                      .|..++.+..-.   .                    ..   +   -+.+++-..+++           ..++..|+++|.
T Consensus       715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-----------~~~~~~WyNLGi  783 (1238)
T KOG1127|consen  715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-----------AIHMYPWYNLGI  783 (1238)
T ss_pred             HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-----------hhccchHHHHhH
Confidence            233333222111   1                    00   0   112222222221           123567788887


Q ss_pred             HHHH--------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048          461 VNLA--------CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS  532 (608)
Q Consensus       461 ~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  532 (608)
                      -|+.        +.+-..|+.++.+++++..++...|.            .+|.+ ...|++.-|..+|-+.+...|...
T Consensus       784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~Wn------------aLGVl-sg~gnva~aQHCfIks~~sep~~~  850 (1238)
T KOG1127|consen  784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWN------------ALGVL-SGIGNVACAQHCFIKSRFSEPTCH  850 (1238)
T ss_pred             HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHH------------HHHHh-hccchhhhhhhhhhhhhhccccch
Confidence            7765        23345899999999999999999997            67766 667999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ..|.++|.++.+..+++-|...|.++..++|.+...|...+.+....|+.-++...|....++.
T Consensus       851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~  914 (1238)
T KOG1127|consen  851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC  914 (1238)
T ss_pred             hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence            9999999999999999999999999999999999999999999999999999999998855543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.61  E-value=6.1e-12  Score=123.14  Aligned_cols=298  Identities=17%  Similarity=0.076  Sum_probs=233.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-HRAHHRLANLYL  343 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~  343 (608)
                      .....-|..-+..|+|.+|.....++-+..+.....+..-+.+--++|+++.|-.++.++-+..+++ ..+...++.+..
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll  164 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            3445567777888999999999999888777777777777888889999999999999999885443 567788899999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH----HH
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA----LL  419 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~----~~  419 (608)
                      ..|+++.|.....+++. ..|.+      .........+|...|+|.....++.+.-+..--+.++.-..--..    +.
T Consensus       165 ~~~d~~aA~~~v~~ll~-~~pr~------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~  237 (400)
T COG3071         165 NRRDYPAARENVDQLLE-MTPRH------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ  237 (400)
T ss_pred             hCCCchhHHHHHHHHHH-hCcCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999988 88877      566666778888999999999998888776544433332221111    11


Q ss_pred             HcCChHHHH---HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040048          420 KLHKHQEAD---ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK  496 (608)
Q Consensus       420 ~~g~~~eA~---~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  496 (608)
                      ...+-..+.   .+.+.....-..          ++.+...++.-+..+|++++|.+..+++++..-+..-..       
T Consensus       238 q~~~~~~~~gL~~~W~~~pr~lr~----------~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-------  300 (400)
T COG3071         238 QARDDNGSEGLKTWWKNQPRKLRN----------DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-------  300 (400)
T ss_pred             HHhccccchHHHHHHHhccHHhhc----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-------
Confidence            222222222   233333322221          377888899999999999999999999999877655221       


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                            .  .-...-++...=++..++.++..|+++.++..||.++++.+.|.+|..+|+.+++..|+ ...|..+|.++
T Consensus       301 ------~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~  371 (400)
T COG3071         301 ------L--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADAL  371 (400)
T ss_pred             ------H--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHH
Confidence                  1  33456788999999999999999999999999999999999999999999999999876 56788999999


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 040048          577 AKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       577 ~~~g~~~~A~~~~~~al~l  595 (608)
                      .++|+..+|.+.++.++-+
T Consensus       372 ~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         372 DQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHcCChHHHHHHHHHHHHH
Confidence            9999999999999999864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=1.5e-14  Score=128.56  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA  551 (608)
Q Consensus       472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  551 (608)
                      ..+|+++++++|++   +.            .+|.++...|++++|+.+|++++..+|.+..+|..+|.++...|++++|
T Consensus        13 ~~~~~~al~~~p~~---~~------------~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A   77 (144)
T PRK15359         13 EDILKQLLSVDPET---VY------------ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTA   77 (144)
T ss_pred             HHHHHHHHHcCHHH---HH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            46788999999885   22            6799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      +..|++++.++|+++.+++++|.++..+|++++|+..|++++++.|++++.+..+
T Consensus        78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~  132 (144)
T PRK15359         78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR  132 (144)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.60  E-value=8.9e-14  Score=135.28  Aligned_cols=191  Identities=15%  Similarity=0.027  Sum_probs=155.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---H
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR---A  334 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~  334 (608)
                      +..++.++.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|+++++..|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            56788999999999999999999999999999999876   57899999999999999999999999999998765   7


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048          335 HHRLANLYLRL--------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS  406 (608)
Q Consensus       335 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  406 (608)
                      ++.+|.++...        |++++|+..|++++. ..|++.......   ..+....       ...             
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~---~~~~~~~-------~~~-------------  165 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-RYPNSEYAPDAK---KRMDYLR-------NRL-------------  165 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HCCCChhHHHHH---HHHHHHH-------HHH-------------
Confidence            99999999886        889999999999988 788773322111   1111100       000             


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                       ......+|.++...|++++|+..+++++...|+...       ...+++.+|.++...|++++|..+++.+....|
T Consensus       166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA-------TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence             122346788999999999999999999998776411       278999999999999999999999888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.60  E-value=1.6e-14  Score=140.44  Aligned_cols=305  Identities=12%  Similarity=0.048  Sum_probs=218.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRI------EPHYHRAH  335 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~  335 (608)
                      -+..-|.-+++.|++...+.+|+.|++.-.++.    .+|..+|.+|+.+++|++|+++-..-+.+      .-..+.+.
T Consensus        19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss   98 (639)
T KOG1130|consen   19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS   98 (639)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence            345578899999999999999999999887764    46889999999999999999876544332      12235567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh--------------------cHHHHHHH
Q 040048          336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR--------------------DWNTLIQE  395 (608)
Q Consensus       336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~A~~~  395 (608)
                      -+||..+..+|.|++|+.+..+-+. +...-........++++++.+|...|                    .++.|++.
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd-~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f  177 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLD-FARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF  177 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhH-HHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence            7899999999999999999988876 66655566777888999999987654                    34556666


Q ss_pred             HHHHHHcCCCC-----hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH
Q 040048          396 TRAAIAGGADS-----APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED  470 (608)
Q Consensus       396 ~~~al~~~~~~-----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  470 (608)
                      |..-+++....     ...++-.+|..|+-+|+|+.|+...+.-+.+.....+.-    ..-.++.++|.++...|+++.
T Consensus       178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA----aeRRA~sNlgN~hiflg~fe~  253 (639)
T KOG1130|consen  178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA----AERRAHSNLGNCHIFLGNFEL  253 (639)
T ss_pred             HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH----HHHHhhcccchhhhhhcccHh
Confidence            66555542211     124566778888888899998887776665543321111    125677888899999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHH
Q 040048          471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP------YNSVLLCNRAACRSK  544 (608)
Q Consensus       471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~  544 (608)
                      |+++|++.+.+.-.      +-.+...+.+.+.+|+.|.-..++++||.++.+-+.+..      ....+++.||..+-.
T Consensus       254 A~ehYK~tl~LAie------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  254 AIEHYKLTLNLAIE------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             HHHHHHHHHHHHHH------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            99998887654221      111222344556888999888999999998888776522      345678888999999


Q ss_pred             cCCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHcCC
Q 040048          545 LGQFEKAIEDCNAALNVR-----PG-YSKARLRRADCFAKIEK  581 (608)
Q Consensus       545 ~g~~~~A~~~~~~al~~~-----p~-~~~a~~~la~~~~~~g~  581 (608)
                      +|..++|+.+.++.+++.     +. ...+..++...-..+|.
T Consensus       328 lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ  370 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence            999999888888877652     22 23445566655555554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=1.1e-14  Score=137.71  Aligned_cols=111  Identities=36%  Similarity=0.636  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      .++.+..-|.-+.+.++|.+|+..|.+||+++|.++.+|+++|.+|.++|+++.|++.++.+|.++|.+.++|.+||.+|
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            35556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          577 AKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       577 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ..+|++++|++.|+++++++|+|+..+..|.
T Consensus       160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  160 LALGKYEEAIEAYKKALELDPDNESYKSNLK  190 (304)
T ss_pred             HccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence            9999999999999999999999999888764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.59  E-value=3.9e-13  Score=139.46  Aligned_cols=276  Identities=13%  Similarity=-0.040  Sum_probs=200.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLE----AVFECREAIRIEPHYHRAHHR  337 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~  337 (608)
                      ...+..+..|..++..|++++|+..++++++.+|++..++.. +..+...|++..    +...+......+|....++..
T Consensus        41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  119 (355)
T cd05804          41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM  119 (355)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence            346778889999999999999999999999999999877775 656655555444    444444433567777888889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC---hHHHHHHH
Q 040048          338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS---APQIYALQ  414 (608)
Q Consensus       338 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~l  414 (608)
                      +|.++...|++++|+..+++++. +.|++      ...+..++.++...|++++|+..+++++...|..   ....+..+
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~-~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l  192 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALE-LNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL  192 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh-hCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence            99999999999999999999999 88888      5678889999999999999999999999987642   22456689


Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH--HHHHHHHHHHcCCHHHHHHH--H-HHHHHhCCCChHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL--LVVRAQVNLACGRFEDALAA--I-QKAAKQDSNNKEVN  489 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~--~-~~al~~~p~~~~~~  489 (608)
                      +.++...|++++|+..|++++...|....       ....  ...+...+...|....+..+  + .......+......
T Consensus       193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~  265 (355)
T cd05804         193 ALFYLERGDYEAALAIYDTHIAPSAESDP-------ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAF  265 (355)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhccccCCCh-------HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchH
Confidence            99999999999999999998765552100       0111  00222333344433333332  1 11111112211111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          490 MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY---------NSVLLCNRAACRSKLGQFEKAIEDCNAALN  560 (608)
Q Consensus       490 ~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  560 (608)
                      ..          ...+.++...|+.++|...++.+......         ........|.++...|++++|+..+..++.
T Consensus       266 ~~----------~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         266 ND----------LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            11          25778889999999999999887654322         245667889999999999999999999987


Q ss_pred             cC
Q 040048          561 VR  562 (608)
Q Consensus       561 ~~  562 (608)
                      +.
T Consensus       336 ~a  337 (355)
T cd05804         336 DL  337 (355)
T ss_pred             HH
Confidence            63

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.59  E-value=9.3e-14  Score=135.16  Aligned_cols=176  Identities=16%  Similarity=0.128  Sum_probs=151.1

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048          407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK  486 (608)
Q Consensus       407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  486 (608)
                      ....++.+|..+...|++++|+..|++++...|++..       ...+++.+|.++...|++++|+..|+++++..|+++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            4577888999999999999999999999998887421       146889999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHhhcCCCCCHHHH-----------------HHHHHH
Q 040048          487 EVNMVMRKAKGVAAARSNGNALFKQ--------AKFSEAAAAYGDGLGLDPYNSVLL-----------------CNRAAC  541 (608)
Q Consensus       487 ~~~~~l~~~~~~~~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~-----------------~~la~~  541 (608)
                      ....         +++.+|.++...        |++++|+..|++++..+|++...+                 ..+|.+
T Consensus       105 ~~~~---------a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       105 DADY---------AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             chHH---------HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7422         224778888776        889999999999999999875432                 467889


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          542 RSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      +...|++.+|+..|++++...|+.   +.+++.+|.++..+|++++|..+++.+....|+
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            999999999999999999997764   689999999999999999999999988877764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.58  E-value=1e-13  Score=144.75  Aligned_cols=140  Identities=19%  Similarity=0.185  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----  527 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----  527 (608)
                      +.++.+||.+|...|++++|..++++++++......    ....+....+..++.++..++++++|+.++.+++++    
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG----ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            677888899999999999999999988876543100    011122344568999999999999999999999876    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          528 ----DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR--------PGYSKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       528 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                          ++.-+..+.++|.+|..+|+|++|.++|++|+.+.        +.....+..+|..|.+++++.+|...|..++.+
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence                22346789999999999999999999999999874        334567889999999999999999999998875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.58  E-value=4.8e-12  Score=133.99  Aligned_cols=311  Identities=18%  Similarity=0.124  Sum_probs=222.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      +.+.+.....++...|++++|++.++.....-.+...++-.+|.++..+|++++|...|...|..+|++...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            35677888899999999999999999998888888999999999999999999999999999999999999999888887


Q ss_pred             HHcC-----CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH-HHHHHHHHHHcCCCChHHHHHHHHH
Q 040048          343 LRLG-----EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT-LIQETRAAIAGGADSAPQIYALQAE  416 (608)
Q Consensus       343 ~~~g-----~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~la~  416 (608)
                      ....     ..+.-...|++... ..|......       .+...+..-..+.. +..++...+..+-   |.++..+-.
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~-~yp~s~~~~-------rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~  151 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAE-KYPRSDAPR-------RLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKP  151 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHH-hCccccchh-------HhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHH
Confidence            4333     45666777776654 334321000       00000111122322 2233344444432   334444444


Q ss_pred             HHHHcCChHHHHHHhhc---CCCC----CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 040048          417 ALLKLHKHQEADETLKN---GPNF----DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN  489 (608)
Q Consensus       417 ~~~~~g~~~eA~~~l~~---al~~----~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  489 (608)
                      +|....+.+-...++..   .++.    ...+......+.....+++.+|..|...|++++|+.++++++...|..++.+
T Consensus       152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely  231 (517)
T PF12569_consen  152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY  231 (517)
T ss_pred             HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            44433222222222221   1111    1100000000111245778899999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C--
Q 040048          490 MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--Y--  565 (608)
Q Consensus       490 ~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--  565 (608)
                      .            ..|.++...|++.+|..+++.|-.++..+-.+....+..+++.|+.++|.+.+..-...+-+  .  
T Consensus       232 ~------------~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L  299 (517)
T PF12569_consen  232 M------------TKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL  299 (517)
T ss_pred             H------------HHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence            6            89999999999999999999999999998888888999999999999999998877654421  1  


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          566 -----SKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       566 -----~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                           .......|.+|.+.|++..|++.|..+.+..
T Consensus       300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                 1223467999999999999999999988764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.57  E-value=2.1e-13  Score=127.79  Aligned_cols=128  Identities=18%  Similarity=0.124  Sum_probs=118.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-H
Q 040048          465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR-S  543 (608)
Q Consensus       465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~-~  543 (608)
                      .++.++++..++++++.+|++.+.|.            .+|.++...|++++|+..|++++.++|+++.++..+|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~------------~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWA------------LLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            56789999999999999999999987            8999999999999999999999999999999999999975 6


Q ss_pred             HcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          544 KLGQ--FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       544 ~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      ..|+  +++|+..++++++.+|+++.+++.+|.+++..|++++|+.+|++++++.|.+.+-..
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            7787  599999999999999999999999999999999999999999999999988765443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.56  E-value=6.3e-14  Score=124.47  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=116.6

Q ss_pred             HHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 040048          428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA  507 (608)
Q Consensus       428 ~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~  507 (608)
                      ...|+++++++|+             .+..+|.++...|++++|+..|++++..+|.+..++.            .+|.+
T Consensus        13 ~~~~~~al~~~p~-------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~------------~lg~~   67 (144)
T PRK15359         13 EDILKQLLSVDPE-------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHI------------ALAGT   67 (144)
T ss_pred             HHHHHHHHHcCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------HHHHH
Confidence            3567777777764             2556899999999999999999999999999999886            89999


Q ss_pred             HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          508 LFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       508 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      +...|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+..+|.+...+
T Consensus        68 ~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         68 WMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998887654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=1.3e-11  Score=125.98  Aligned_cols=344  Identities=14%  Similarity=0.061  Sum_probs=207.9

Q ss_pred             cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 040048          234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL  311 (608)
Q Consensus       234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~  311 (608)
                      ..|..+-....++.++++...+..++.  |.++.++...-.++.+.++|++|+...+.-....-. ....+..+.|.+++
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHc
Confidence            444444455555555555555555543  466666666666666666776666333321111111 11225666666777


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048          312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       312 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (608)
                      +..++|+.+++   ..++.+..+....|.+++++|+|++|++.|+..++ .+.++..........   +......+    
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~---a~~a~l~~----  161 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLL---AVAAALQV----  161 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHH---HHHHhhhH----
Confidence            77777776666   33445555666666777777777777777766655 222221111000000   00000000    


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCC-----CcccccccCCCCcHHHHHHHHHHHHHcC
Q 040048          392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFD-----VDETTRFFGPIGNANLLVVRAQVNLACG  466 (608)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~~~~~~~~~~~~la~~~~~~g  466 (608)
                        . ..+.+...|++.-+.+++.|.++...|+|.+|++.+++++.+.     .++.....-......+...++.++..+|
T Consensus       162 --~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G  238 (652)
T KOG2376|consen  162 --Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG  238 (652)
T ss_pred             --H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence              0 2233334456667889999999999999999999999993221     1110000000112567788999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHH-H------------------------------------HHHHHHHHHHHHHH
Q 040048          467 RFEDALAAIQKAAKQDSNNKEVNMVMRK-A------------------------------------KGVAAARSNGNALF  509 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~-~------------------------------------~~~~~~~~lg~~~~  509 (608)
                      +.++|...|...++.++.+.....+... +                                    +.-..+.+.+.+.+
T Consensus       239 qt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l  318 (652)
T KOG2376|consen  239 QTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL  318 (652)
T ss_pred             chHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877643322200 0                                    11223456666666


Q ss_pred             HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 040048          510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-SKARLRRADCFAKIEKWEASMQD  588 (608)
Q Consensus       510 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~  588 (608)
                      ..+.-+.+.+...+.-...|....-.........+...+.+|++.+...-+..|.. ..+.+.++.+...+|+++.|++.
T Consensus       319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            66766666666655555555543333334444444447999999999999999987 67889999999999999999999


Q ss_pred             HHHH
Q 040048          589 YEIL  592 (608)
Q Consensus       589 ~~~a  592 (608)
                      +...
T Consensus       399 l~~~  402 (652)
T KOG2376|consen  399 LSLF  402 (652)
T ss_pred             HHHH
Confidence            9933

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=3.3e-11  Score=122.99  Aligned_cols=360  Identities=13%  Similarity=0.023  Sum_probs=248.3

Q ss_pred             cccccccCCCcccccccCCCCCCCCCCcchhHHHHhhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 040048          222 GNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALST-RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY  300 (608)
Q Consensus       222 g~i~~~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~  300 (608)
                      +.|+...++..-+++..++.+...+.+++|..+.+.-.. .......+..+.|+|+.+..++|+.+++   ..++.+..+
T Consensus        36 ~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~l  112 (652)
T KOG2376|consen   36 NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKL  112 (652)
T ss_pred             HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHH
Confidence            333334456666777777777777666666544433221 1222233789999999999999999998   556667778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------------------------C-CHHHHHHHHHHHHHcCCHH
Q 040048          301 RSNKTAALIALGRLLEAVFECREAIRIEP------------------------------H-YHRAHHRLANLYLRLGEVE  349 (608)
Q Consensus       301 ~~~la~~~~~~g~~~eA~~~~~~al~~~p------------------------------~-~~~~~~~la~~~~~~g~~~  349 (608)
                      ....|.+++++|+|++|+..|+..++-+.                              . ..+.+|+.|.++...|+|.
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~  192 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN  192 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence            89999999999999999999988755322                              1 3456889999999999999


Q ss_pred             HHHHHHHHhCC----C---CCch-hHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH-------------
Q 040048          350 KAIYHFKHAGP----E---ADQV-DIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP-------------  408 (608)
Q Consensus       350 ~A~~~~~~al~----~---~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------  408 (608)
                      +|++.+++++.    .   -+.. +........+...++.++..+|+..+|...|...+..++.+.+             
T Consensus       193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~  272 (652)
T KOG2376|consen  193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALS  272 (652)
T ss_pred             HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhc
Confidence            99999999922    1   1111 2233445566788899999999999999999998887654321             


Q ss_pred             -----------------------------------HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 040048          409 -----------------------------------QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNAN  453 (608)
Q Consensus       409 -----------------------------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~  453 (608)
                                                         .++.+.+.+.+..+.-+.+.+.........|..         ...
T Consensus       273 ~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~---------~~~  343 (652)
T KOG2376|consen  273 KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPES---------LFP  343 (652)
T ss_pred             cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchH---------HHH
Confidence                                               223334444445555566666655555555542         123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------hh
Q 040048          454 LLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD--------GL  525 (608)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~--------al  525 (608)
                      ++...+...... .+.+|.+.+....+.+|.+.....           ..++.+.+.+|+++.|+..+..        ..
T Consensus       344 ~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~-----------L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~  411 (652)
T KOG2376|consen  344 ILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVL-----------LLRAQLKISQGNPEVALEILSLFLESWKSSIL  411 (652)
T ss_pred             HHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence            333333333333 788899999998888888743322           2678899999999999999983        33


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN-------VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       526 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      +. -..+.+...+-..+++.++-+.|...+.+|+.       -.+.....+..++..-.+-|+-++|...+++.++.+|+
T Consensus       412 ~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~  490 (652)
T KOG2376|consen  412 EA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN  490 (652)
T ss_pred             hh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence            32 22345555566667777776666666666654       23333445666777778889999999999999999999


Q ss_pred             CHHHHHHh
Q 040048          599 DEEVDQAL  606 (608)
Q Consensus       599 ~~~~~~~L  606 (608)
                      +.++.-.|
T Consensus       491 d~~~l~~l  498 (652)
T KOG2376|consen  491 DTDLLVQL  498 (652)
T ss_pred             hHHHHHHH
Confidence            99886554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.55  E-value=7.6e-12  Score=146.11  Aligned_cols=328  Identities=13%  Similarity=0.035  Sum_probs=241.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPN---------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY--  331 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--  331 (608)
                      ++......+.+++..|++++|..++..+....+.         .......+|.++...|++++|...+++++...+..  
T Consensus       408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~  487 (903)
T PRK04841        408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY  487 (903)
T ss_pred             CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence            4555677788889999999999999998765322         12345667888899999999999999999855443  


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC---
Q 040048          332 ---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD---  405 (608)
Q Consensus       332 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---  405 (608)
                         ..++..+|.++...|++++|...+.+++. ..............+..++.++...|+++.|...+++++.....   
T Consensus       488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~-~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~  566 (903)
T PRK04841        488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQ-MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL  566 (903)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence               23567789999999999999999999876 33322222233456678899999999999999999998875211   


Q ss_pred             --C--hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          406 --S--APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ  481 (608)
Q Consensus       406 --~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (608)
                        .  ...++..+|.++...|++++|...+.+++.........     .....+..+|.++...|++++|...+.++..+
T Consensus       567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-----QQLQCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              1  12345678899999999999999999988764321110     12566778999999999999999999999876


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          482 DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----VLLCNRAACRSKLGQFEKAIEDCNA  557 (608)
Q Consensus       482 ~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~  557 (608)
                      ...........     ..........+...|+.+.|..++.......+...    ..+..+|.++...|++++|+..+++
T Consensus       642 ~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~  716 (903)
T PRK04841        642 LGNGRYHSDWI-----ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE  716 (903)
T ss_pred             HhcccccHhHh-----hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44321100000     00000123445568999999999888765433222    2256789999999999999999999


Q ss_pred             HHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048          558 ALNVRP------GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       558 al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      ++....      ....++..+|.++...|+.++|...+.+++++.....-
T Consensus       717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            988632      23467889999999999999999999999998765443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.55  E-value=3.2e-14  Score=138.40  Aligned_cols=280  Identities=14%  Similarity=0.069  Sum_probs=208.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 040048          305 TAALIALGRLLEAVFECREAIRIEPHY----HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC  380 (608)
Q Consensus       305 a~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~  380 (608)
                      |.-++++|+....+.+|+.+++...++    ..+|..||.+|+.+++|++|+++...-+. +...-.........--+++
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-lar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-LARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-HHHHhcchhcccccccccc
Confidence            677889999999999999999998777    34788999999999999999987654332 2111112233345566788


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHcCCh--------------------HHHHHHhhcCC
Q 040048          381 TDAKRTRDWNTLIQETRAAIAGG-----ADSAPQIYALQAEALLKLHKH--------------------QEADETLKNGP  435 (608)
Q Consensus       381 ~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~la~~~~~~g~~--------------------~eA~~~l~~al  435 (608)
                      ..+.-+|.|++|+.+..+-+...     .-....+++++|.+|...|+.                    +.|.++|..-+
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            88999999999998887766542     122346789999999987752                    34455555544


Q ss_pred             CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048          436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS  515 (608)
Q Consensus       436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~  515 (608)
                      ++..+..+..    ....++-++|..|+.+|+|+.|+...+.-+.+.....+-      +..-.++.++|+++.-.|+++
T Consensus       183 ~l~~~lgDr~----aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr------AaeRRA~sNlgN~hiflg~fe  252 (639)
T KOG1130|consen  183 ELSEKLGDRL----AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR------AAERRAHSNLGNCHIFLGNFE  252 (639)
T ss_pred             HHHHHhhhHH----hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH------HHHHHhhcccchhhhhhcccH
Confidence            4332211111    125667789999999999999999998877765443321      112235569999999999999


Q ss_pred             HHHHHHHHhhcCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHH
Q 040048          516 EAAAAYGDGLGLD------PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP------GYSKARLRRADCFAKIEKWE  583 (608)
Q Consensus       516 eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~  583 (608)
                      .|+++|++.+.+.      ...+...+.||..|.-..++++|+.++.+-+.+..      ....+++.||..+-.+|..+
T Consensus       253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~  332 (639)
T KOG1130|consen  253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR  332 (639)
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence            9999999877542      22356778999999999999999999999887642      34678999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 040048          584 ASMQDYEILKKE  595 (608)
Q Consensus       584 ~A~~~~~~al~l  595 (608)
                      +|+.+.++.+++
T Consensus       333 kAl~fae~hl~~  344 (639)
T KOG1130|consen  333 KALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHHHH
Confidence            999988887764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.55  E-value=5.7e-13  Score=146.79  Aligned_cols=275  Identities=10%  Similarity=-0.035  Sum_probs=188.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.+.++|..+...+...+++++|+..++.+++..|+...+|+.+|.++.+.+++.+|...  .++.+.+.+.        
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~--------   97 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL--------   97 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--------
Confidence            677889999999999999999999999999999999999999999999999998877666  6666555443        


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                            ++ .+++++-..+. ..+.+      -.+++.+|.+|.++|+++++...|+++++.+|++ +.+...+|..|..
T Consensus        98 ------~~-~~ve~~~~~i~-~~~~~------k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~ae  162 (906)
T PRK14720         98 ------KW-AIVEHICDKIL-LYGEN------KLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSYEE  162 (906)
T ss_pred             ------ch-hHHHHHHHHHH-hhhhh------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHHHH
Confidence                  11 11112211111 01111      2244555555555555555555555555555544 5677778888888


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-----
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA-----  495 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-----  495 (608)
                      . +.++|+.++.+++.                        .++..+++.++.+++.+.+..+|++.+....+.+.     
T Consensus       163 ~-dL~KA~~m~~KAV~------------------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~  217 (906)
T PRK14720        163 E-DKEKAITYLKKAIY------------------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR  217 (906)
T ss_pred             h-hHHHHHHHHHHHHH------------------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence            8 88888888877753                        25666788888888888888888887764433221     


Q ss_pred             ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048          496 ---KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR  572 (608)
Q Consensus       496 ---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  572 (608)
                         +.+..+.-+=..|...++|++++.+++.+++++|.+..+...++.||.  +.|.. ...|+..+++.          
T Consensus       218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s----------  284 (906)
T PRK14720        218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS----------  284 (906)
T ss_pred             ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh----------
Confidence               223444555678888889999999999999999999999999998887  44443 44555554432          


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          573 ADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       573 a~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                       .+--.-..+..|+..|++.+..++.+
T Consensus       285 -~l~~~~~~~~~~i~~fek~i~f~~G~  310 (906)
T PRK14720        285 -DIGNNRKPVKDCIADFEKNIVFDTGN  310 (906)
T ss_pred             -ccccCCccHHHHHHHHHHHeeecCCC
Confidence             11111135677888888888777765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=1.1e-10  Score=116.01  Aligned_cols=325  Identities=12%  Similarity=0.021  Sum_probs=248.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      +.+...|...|.--..++++..|...|++||..+..+...|...+.+-++......|...+++++.+-|.-...|+....
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y  149 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            46677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      +-..+|+...|...|++-+. ..|+.       .+|......-.+.+.++.|..+|++.+-..|+-  ..|...+..-.+
T Consensus       150 mEE~LgNi~gaRqiferW~~-w~P~e-------qaW~sfI~fElRykeieraR~IYerfV~~HP~v--~~wikyarFE~k  219 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWME-WEPDE-------QAWLSFIKFELRYKEIERARSIYERFVLVHPKV--SNWIKYARFEEK  219 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHc-CCCcH-------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH--HHHHHHHHHHHh
Confidence            99999999999999999998 88875       556666666677788888999998888777763  567777888888


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHH---
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK--EVNMVMRKA---  495 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~---  495 (608)
                      .|...-|...|+.+++...++..       ...++...|..-..++.++.|...|+-++..-|.+.  +.+..+...   
T Consensus       220 ~g~~~~aR~VyerAie~~~~d~~-------~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq  292 (677)
T KOG1915|consen  220 HGNVALARSVYERAIEFLGDDEE-------AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ  292 (677)
T ss_pred             cCcHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence            88888888888888876555321       244555666666777888888888888888777662  221111000   


Q ss_pred             ---------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-------HHHHHHHH
Q 040048          496 ---------------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV-------LLCNRAAC  541 (608)
Q Consensus       496 ---------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~la~~  541 (608)
                                                 ...++|+..-.+....|+.+.-.+.|++|+..-|....       +|..+-.+
T Consensus       293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa  372 (677)
T KOG1915|consen  293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA  372 (677)
T ss_pred             hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence                                       01445566667777778889999999999887664321       22222222


Q ss_pred             H---HHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          542 R---SKLGQFEKAIEDCNAALNVRPG----YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       542 ~---~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      +   ....+.+.+.+.|+.+|++-|.    .+..|+..|....++.+...|.+.+-.|+-..|.+.-.
T Consensus       373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF  440 (677)
T KOG1915|consen  373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF  440 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH
Confidence            2   3467888888888888888776    35667777777677766666666666666666665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=2.4e-11  Score=116.46  Aligned_cols=305  Identities=16%  Similarity=0.115  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG  346 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  346 (608)
                      -..+|.|++..|+|++|+..|.-+...+.-+...+.++|.|++-+|.|.+|.....++    |+.+-....+-.+-.+++
T Consensus        60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence            3445666666666666666666665555445556666666666666666665544443    444444444444444455


Q ss_pred             CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048          347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE  426 (608)
Q Consensus       347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e  426 (608)
                      +-++-+. |...+.          +..+-.+.++.+......|++||+.|.+.+..+|+.. .+...+|.+|.++.-++-
T Consensus       136 dEk~~~~-fh~~Lq----------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~-alNVy~ALCyyKlDYydv  203 (557)
T KOG3785|consen  136 DEKRILT-FHSSLQ----------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI-ALNVYMALCYYKLDYYDV  203 (557)
T ss_pred             cHHHHHH-HHHHHh----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh-hhHHHHHHHHHhcchhhh
Confidence            4333332 222221          1234455666666677788999999999988877653 456677889999999999


Q ss_pred             HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHH-----------
Q 040048          427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-DSNNKEVNMVMRK-----------  494 (608)
Q Consensus       427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~-----------  494 (608)
                      +.+.+.-.+...|+.          .-+....+..+++.=+-..|.......... +...+.....++.           
T Consensus       204 sqevl~vYL~q~pdS----------tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgA  273 (557)
T KOG3785|consen  204 SQEVLKVYLRQFPDS----------TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGA  273 (557)
T ss_pred             HHHHHHHHHHhCCCc----------HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccH
Confidence            988888888888874          556666666665543333333333322221 1111111111110           


Q ss_pred             ------H--HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC-------------------
Q 040048          495 ------A--KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ-------------------  547 (608)
Q Consensus       495 ------~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------------  547 (608)
                            +  ...++..++...|..+++..+|+.++..   ++|..+.-+...|.++..+|+                   
T Consensus       274 LqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG  350 (557)
T KOG3785|consen  274 LQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG  350 (557)
T ss_pred             HHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence                  0  1144556788888899999999887764   456666656666666655554                   


Q ss_pred             ------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          548 ------------------------FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       548 ------------------------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                                              |++.+.++...-...-++....+++|+++...|++.+|.+.|-+.-..+-.|.
T Consensus       351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~  427 (557)
T KOG3785|consen  351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK  427 (557)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence                                    33333333333333344455667888888888888888888776654443333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.50  E-value=2.3e-12  Score=141.41  Aligned_cols=137  Identities=12%  Similarity=0.028  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +.++..+|.+....|++++|..+++.++++.|++..++.            .++.++.+.+++++|+..+++++..+|++
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~------------~~a~~L~~~~~~eeA~~~~~~~l~~~p~~  153 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI------------LMLRGVKRQQGIEAGRAEIELYFSGGSSS  153 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH------------HHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence            677777888888888888888888888888888777765            77777888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      +.+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            888888888888888888888888888877777778888888888888888888888888877665443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.50  E-value=2.6e-13  Score=128.35  Aligned_cols=103  Identities=40%  Similarity=0.586  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      ++.+...|+-++..++|.+|+..|.+||+++|.++.+|.+++.+|.++|.++.|++.++.+|.++|.+..+|.+||.+|+
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhH
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDI  367 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~  367 (608)
                      .+|++++|++.|+++|+ ++|++.
T Consensus       161 ~~gk~~~A~~aykKaLe-ldP~Ne  183 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALE-LDPDNE  183 (304)
T ss_pred             ccCcHHHHHHHHHhhhc-cCCCcH
Confidence            99999999999999999 999983

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.49  E-value=3.1e-12  Score=141.08  Aligned_cols=239  Identities=15%  Similarity=0.065  Sum_probs=193.1

Q ss_pred             hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHH
Q 040048          292 SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK  371 (608)
Q Consensus       292 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~  371 (608)
                      ..+|.+..++..+...+...+++++|+..++.+++..|+...+|+.+|.++...+++.++...  .++. ..+.+     
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-~~~~~-----   96 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID-SFSQN-----   96 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-hcccc-----
Confidence            457889999999999999999999999999999999999999999999999999998888766  6655 33333     


Q ss_pred             HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCc
Q 040048          372 SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGN  451 (608)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~  451 (608)
                                     .+| .++.++...+...+.+ ..++..+|.||-++|++++|...|+++++.+|++          
T Consensus        97 ---------------~~~-~~ve~~~~~i~~~~~~-k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n----------  149 (906)
T PRK14720         97 ---------------LKW-AIVEHICDKILLYGEN-KLALRTLAEAYAKLNENKKLKGVWERLVKADRDN----------  149 (906)
T ss_pred             ---------------cch-hHHHHHHHHHHhhhhh-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc----------
Confidence                           345 4444444444333443 3588999999999999999999999999999985          


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +.++.++|..|... +.++|+.++.+|+..                          +...++|.++..++.+.+..+|++
T Consensus       150 ~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------------~i~~kq~~~~~e~W~k~~~~~~~d  202 (906)
T PRK14720        150 PEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------------------FIKKKQYVGIEEIWSKLVHYNSDD  202 (906)
T ss_pred             HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------------HHhhhcchHHHHHHHHHHhcCccc
Confidence            99999999999999 999999999998764                          334457777777777777777765


Q ss_pred             HHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          532 SVL--------------------LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI  591 (608)
Q Consensus       532 ~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~  591 (608)
                      ...                    +.-+=.+|...++|++++..++.+++.+|++..+...++.||.  +.|.. ...|+.
T Consensus       203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee  279 (906)
T PRK14720        203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLED  279 (906)
T ss_pred             chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHH
Confidence            433                    3334478888999999999999999999999999999999998  44443 455555


Q ss_pred             HHHh
Q 040048          592 LKKE  595 (608)
Q Consensus       592 al~l  595 (608)
                      ++++
T Consensus       280 ~l~~  283 (906)
T PRK14720        280 YLKM  283 (906)
T ss_pred             HHHH
Confidence            5553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.49  E-value=5.4e-13  Score=117.65  Aligned_cols=121  Identities=21%  Similarity=0.340  Sum_probs=113.7

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       473 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  552 (608)
                      +.|++++..+|++.....            .+|..+...|++++|+..|++++..+|.++.++..+|.++..+|++++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~   71 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIY------------ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAI   71 (135)
T ss_pred             hhHHHHHcCChhhHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            468889999999877654            88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      .+|++++..+|+++..++.+|.++...|++++|+..|+++++++|++......
T Consensus        72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  124 (135)
T TIGR02552        72 DAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL  124 (135)
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence            99999999999999999999999999999999999999999999999885543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=2.8e-11  Score=116.09  Aligned_cols=340  Identities=12%  Similarity=0.033  Sum_probs=214.3

Q ss_pred             CCCCCcchhHHHHhhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CC------------
Q 040048          244 ASSSSAEPTSLCRALSTR--MDPETLKIMGNEDYKAGNFAEALALYDAAISI--------------DP------------  295 (608)
Q Consensus       244 ~~~~~~~a~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------------~p------------  295 (608)
                      ..+.+++|...+..+...  .+++.+.++|.+++-.|.|.+|...-.++-+.              +.            
T Consensus        69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq  148 (557)
T KOG3785|consen   69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ  148 (557)
T ss_pred             hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence            345556777777777554  45788999999999999999999988776321              10            


Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHH-HH
Q 040048          296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKS-LQ  374 (608)
Q Consensus       296 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~-~~  374 (608)
                      +..+-...+|.+.+..-.|++|++.|.+++.-+|+.......+|.||+++.-|+-+.+.+.-.++ .-|+....... +-
T Consensus       149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~-q~pdStiA~NLkac  227 (557)
T KOG3785|consen  149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR-QFPDSTIAKNLKAC  227 (557)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH-hCCCcHHHHHHHHH
Confidence            01122355666677777899999999999999999999999999999999999999888888777 55555322111 11


Q ss_pred             HHHHH----hHHHHH-----hhc--HHHHHHHHH----------HHHHcCC---CChHHHHHHHHHHHHHcCChHHHHHH
Q 040048          375 AHLNK----CTDAKR-----TRD--WNTLIQETR----------AAIAGGA---DSAPQIYALQAEALLKLHKHQEADET  430 (608)
Q Consensus       375 ~~~~~----~~~~~~-----~~~--~~~A~~~~~----------~al~~~~---~~~~~~~~~la~~~~~~g~~~eA~~~  430 (608)
                      .++.+    ......     .++  |..+....+          -++..-|   +..|++..+++..|+..++.++|+..
T Consensus       228 n~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L  307 (557)
T KOG3785|consen  228 NLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISL  307 (557)
T ss_pred             HHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHH
Confidence            11111    000000     000  111111111          0111111   23467888899999999999999998


Q ss_pred             hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCh-------------HHHHHHHH
Q 040048          431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA---AKQDSNNK-------------EVNMVMRK  494 (608)
Q Consensus       431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~-------------~~~~~l~~  494 (608)
                      .+..   +|..          +.-+...|.++...|+--...++++-+   +.+-....             .......+
T Consensus       308 ~Kdl---~Ptt----------P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q  374 (557)
T KOG3785|consen  308 CKDL---DPTT----------PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ  374 (557)
T ss_pred             Hhhc---CCCC----------hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence            8765   4442          666777888888888754444444333   22221111             11111111


Q ss_pred             H-------HHHHHH--------HHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          495 A-------KGVAAA--------RSNGNALFKQAKFSEAAAAYGDGLGLDP-YNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       495 ~-------~~~~~~--------~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      .       ..+.+|        ++++.++...|+|.+|.+.|-+.-..+- +.......||.||...|..+-|...+-+.
T Consensus       375 FddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~  454 (557)
T KOG3785|consen  375 FDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT  454 (557)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence            1       112222        5678888888888888888877655442 33445557888888888888887776543


Q ss_pred             HhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          559 LNVRPGY-SKARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       559 l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      -  .|.. ...+..+|..+++.+++--|.+.|...-.++|+-
T Consensus       455 ~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  455 N--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             C--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            1  2222 2334456777788888888888888888888753

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.46  E-value=7.3e-12  Score=117.38  Aligned_cols=156  Identities=13%  Similarity=0.134  Sum_probs=130.9

Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~  457 (608)
                      .-...|...|+|+......++...  +.          .-+...++.++++..+++++..+|++          ...|..
T Consensus        21 ~~~~~Y~~~g~~~~v~~~~~~~~~--~~----------~~~~~~~~~~~~i~~l~~~L~~~P~~----------~~~w~~   78 (198)
T PRK10370         21 LCVGSYLLSPKWQAVRAEYQRLAD--PL----------HQFASQQTPEAQLQALQDKIRANPQN----------SEQWAL   78 (198)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHhC--cc----------ccccCchhHHHHHHHHHHHHHHCCCC----------HHHHHH
Confidence            345567788888876544432221  11          01123677899999999999999986          999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHhhcCCCCCHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL-FKQAK--FSEAAAAYGDGLGLDPYNSVL  534 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~-~~~g~--~~eA~~~~~~al~~~p~~~~~  534 (608)
                      +|.+|...|++++|+..|++++.+.|++..++.            .+|.++ ...|+  +++|...++++++.+|++..+
T Consensus        79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~------------~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a  146 (198)
T PRK10370         79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYA------------ALATVLYYQAGQHMTPQTREMIDKALALDANEVTA  146 (198)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence            999999999999999999999999999999986            888875 67777  599999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                      ++.+|.++...|++++|+.+|++++++.|.+..
T Consensus       147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999887643

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=7e-12  Score=115.41  Aligned_cols=173  Identities=17%  Similarity=0.083  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV  488 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  488 (608)
                      .++.....+.+..++.+-|..++++.....|..          ..+....|..+...|++++|+++|+..++-+|.+..+
T Consensus        53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S----------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~  122 (289)
T KOG3060|consen   53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS----------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI  122 (289)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC----------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence            344444555555566666666665555544542          4555555666666666666666666666666665554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 040048          489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA  568 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a  568 (608)
                      +.            ..-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-|+++++-+.|-++..
T Consensus       123 ~K------------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~  190 (289)
T KOG3060|consen  123 RK------------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY  190 (289)
T ss_pred             HH------------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH
Confidence            43            233344445555566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 040048          569 RLRRADCFAKIE---KWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       569 ~~~la~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      +..+|.+++-+|   +++-|.++|.++++++|.+-..+
T Consensus       191 f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral  228 (289)
T KOG3060|consen  191 FQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL  228 (289)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence            666666655554   44556666666666666544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=2.8e-10  Score=111.64  Aligned_cols=300  Identities=17%  Similarity=0.146  Sum_probs=219.9

Q ss_pred             cccccCCCCCCCCCCcchhHHHHhhhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHH
Q 040048          234 NHYNYNPPKPASSSSAEPTSLCRALST-RMDPE-TLKIMGNEDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIA  310 (608)
Q Consensus       234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~  310 (608)
                      ..-..++.....|++..|+.+...... ...|. .+..-+...-.+|+++.|-.++.++-+..+++ ......++.++..
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence            333344444456666667776666533 23344 45555677788999999999999999985554 4567888999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhHHHHHhhc
Q 040048          311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE--ADQVDIAKAKSLQAHLNKCTDAKRTRD  388 (608)
Q Consensus       311 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~  388 (608)
                      .|+++.|.....++++..|.++.+......+|...|++.+....+.+.-+.  +.+... ....-.++..+-.....-+.
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-ARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-HHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999888776441  122221 11111222222222222222


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCH
Q 040048          389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF  468 (608)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~  468 (608)
                      -+......+.. ...-...+.+...++.-+..+|++++|.++.+++++..-+           ..+...++  ...-+++
T Consensus       245 ~~gL~~~W~~~-pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----------~~L~~~~~--~l~~~d~  310 (400)
T COG3071         245 SEGLKTWWKNQ-PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-----------PRLCRLIP--RLRPGDP  310 (400)
T ss_pred             chHHHHHHHhc-cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----------hhHHHHHh--hcCCCCc
Confidence            22211122211 1111233567788899999999999999999999987655           34222222  2467889


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH
Q 040048          469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF  548 (608)
Q Consensus       469 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  548 (608)
                      ..=++..++.++..|+++..+.            .+|..+++.+.|.+|..+|+.+++..|. ...+..+|.++.++|+.
T Consensus       311 ~~l~k~~e~~l~~h~~~p~L~~------------tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~  377 (400)
T COG3071         311 EPLIKAAEKWLKQHPEDPLLLS------------TLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEP  377 (400)
T ss_pred             hHHHHHHHHHHHhCCCChhHHH------------HHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCCh
Confidence            9999999999999999997775            8999999999999999999999999775 77888999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 040048          549 EKAIEDCNAALNV  561 (608)
Q Consensus       549 ~~A~~~~~~al~~  561 (608)
                      .+|.+++++++.+
T Consensus       378 ~~A~~~r~e~L~~  390 (400)
T COG3071         378 EEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999854

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.45  E-value=4.1e-12  Score=125.80  Aligned_cols=261  Identities=21%  Similarity=0.228  Sum_probs=177.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          273 EDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKA  351 (608)
Q Consensus       273 ~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  351 (608)
                      .++-.|+|..++.-++ ....++. .......+.++++.+|+++..+......-  .| ...+...++..+...++.+.+
T Consensus        10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~-~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SP-ELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SC-CCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--Ch-hHHHHHHHHHHHhCccchHHH
Confidence            3455677777776555 2222222 23445666777777777766554443321  22 234445555555444455555


Q ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHh
Q 040048          352 IYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL  431 (608)
Q Consensus       352 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l  431 (608)
                      +..++..+....                                        ....+.+....|.++...|++++|+..+
T Consensus        86 l~~l~~~~~~~~----------------------------------------~~~~~~~~~~~A~i~~~~~~~~~AL~~l  125 (290)
T PF04733_consen   86 LEELKELLADQA----------------------------------------GESNEIVQLLAATILFHEGDYEEALKLL  125 (290)
T ss_dssp             HHHHHHCCCTS-------------------------------------------CHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_pred             HHHHHHHHHhcc----------------------------------------ccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555443111                                        1112345566678888889999999988


Q ss_pred             hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 040048          432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ  511 (608)
Q Consensus       432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~  511 (608)
                      .+.-               +.+.......+++..++++.|.+.++.+.+.+.+..-...            ..+++.+..
T Consensus       126 ~~~~---------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL------------a~awv~l~~  178 (290)
T PF04733_consen  126 HKGG---------------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL------------AEAWVNLAT  178 (290)
T ss_dssp             TTTT---------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH------------HHHHHHHHH
T ss_pred             HccC---------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH------------HHHHHHHHh
Confidence            7751               2777788889999999999999999998877666443322            334444444


Q ss_pred             C--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 040048          512 A--KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW-EASMQD  588 (608)
Q Consensus       512 g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~A~~~  588 (608)
                      |  ++.+|..+|++..+..+..+..++.+|.++..+|+|++|.+.+++++..+|++++++.+++.+...+|+. +.+.++
T Consensus       179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence            4  6899999999988888888999999999999999999999999999999999999999999999999998 667788


Q ss_pred             HHHHHHhCCCCHHHHH
Q 040048          589 YEILKKEAPDDEEVDQ  604 (608)
Q Consensus       589 ~~~al~l~P~~~~~~~  604 (608)
                      +.++...+|+++-+..
T Consensus       259 l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  259 LSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHCHHHTTTSHHHHH
T ss_pred             HHHHHHhCCCChHHHH
Confidence            8888889999886543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.44  E-value=5.8e-12  Score=131.45  Aligned_cols=220  Identities=17%  Similarity=0.134  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 040048          332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY  411 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  411 (608)
                      ......++.++...|-...|+..|++               +..+-....+|...|+..+|.....+-++.+|+  +.+|
T Consensus       398 Wq~q~~laell~slGitksAl~I~Er---------------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d--~~ly  460 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFER---------------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD--PRLY  460 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHh---------------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--chhH
Confidence            44567899999999999999999998               455677788899999999999999998885554  4678


Q ss_pred             HHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048          412 ALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV  491 (608)
Q Consensus       412 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  491 (608)
                      ..+|++.....-|++|.++.+..-                +.+...+|......++|+++..+++..++++|-....|+ 
T Consensus       461 c~LGDv~~d~s~yEkawElsn~~s----------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf-  523 (777)
T KOG1128|consen  461 CLLGDVLHDPSLYEKAWELSNYIS----------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF-  523 (777)
T ss_pred             HHhhhhccChHHHHHHHHHhhhhh----------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH-
Confidence            888888877777788877766543                556677777788899999999999999999999999886 


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048          492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR  571 (608)
Q Consensus       492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  571 (608)
                                 .+|.+..+.++++.|.++|.+++.++|++.++|++++..|.++|+-.+|...+++|++.+-++...|.+
T Consensus       524 -----------~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN  592 (777)
T KOG1128|consen  524 -----------GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN  592 (777)
T ss_pred             -----------hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence                       899999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          572 RADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       572 la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      .-.+....|.+++|++.|.+.+.+.
T Consensus       593 ymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  593 YMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999999999999999999998764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.44  E-value=1.9e-11  Score=113.77  Aligned_cols=178  Identities=20%  Similarity=0.148  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH
Q 040048          391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED  470 (608)
Q Consensus       391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  470 (608)
                      .+...+-.....+|++. .+ ..++..+...|+-+.+..+..++....|.+          ..++..+|...+..|++.+
T Consensus        51 ~a~~al~~~~~~~p~d~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d----------~~ll~~~gk~~~~~g~~~~  118 (257)
T COG5010          51 GAAAALGAAVLRNPEDL-SI-AKLATALYLRGDADSSLAVLQKSAIAYPKD----------RELLAAQGKNQIRNGNFGE  118 (257)
T ss_pred             HHHHHHHHHHhcCcchH-HH-HHHHHHHHhcccccchHHHHhhhhccCccc----------HHHHHHHHHHHHHhcchHH
Confidence            35555666666777764 44 888999999999999999999988888875          7777779999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK  550 (608)
Q Consensus       471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  550 (608)
                      |+..++++..+.|++.++|.            .+|.+|.+.|++++|...|.+++++.|.++.+..|+|..|.-.|+++.
T Consensus       119 A~~~~rkA~~l~p~d~~~~~------------~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~  186 (257)
T COG5010         119 AVSVLRKAARLAPTDWEAWN------------LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLED  186 (257)
T ss_pred             HHHHHHHHhccCCCChhhhh------------HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence            99999999999999999987            899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       551 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                      |..++..+....+.+..+..+|+.+...+|++++|...-.+-
T Consensus       187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            999999999999989999999999999999999998876543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=9.7e-10  Score=109.45  Aligned_cols=323  Identities=14%  Similarity=0.069  Sum_probs=206.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .+...|...+.+-++......|..++++|+.+-|.-...|+....+-..+|+...|.+.|++-++..|+ ..+|......
T Consensus       105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~f  183 (677)
T KOG1915|consen  105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKF  183 (677)
T ss_pred             ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHH
Confidence            456789999999999999999999999999999999899999998889999999999999999999886 4788888888


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHH
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA--PQIYALQAEALL  419 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~la~~~~  419 (608)
                      -.+..+.+.|...|++.+- ..|.       +..++..+..-.+.|....+...|+++++.-.++.  ..++...|..-.
T Consensus       184 ElRykeieraR~IYerfV~-~HP~-------v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe  255 (677)
T KOG1915|consen  184 ELRYKEIERARSIYERFVL-VHPK-------VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE  255 (677)
T ss_pred             HHHhhHHHHHHHHHHHHhe-eccc-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            8888888889999988876 5554       45566666666666777777777777776543332  233444455555


Q ss_pred             HcCChHHHHHHhhcCCCCCCccccc-----------ccC-----------------------CCCcHHHHHHHHHHHHHc
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTR-----------FFG-----------------------PIGNANLLVVRAQVNLAC  465 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~-----------~~~-----------------------~~~~~~~~~~la~~~~~~  465 (608)
                      .++.++.|..+|+-++..-|.+...           -++                       ..-+..+|+..-.+....
T Consensus       256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~  335 (677)
T KOG1915|consen  256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV  335 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence            5666666666666666655553110           000                       113467777788888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHH------------------------------------HHHHHHHHHHHHHH
Q 040048          466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKA------------------------------------KGVAAARSNGNALF  509 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~------------------------------------~~~~~~~~lg~~~~  509 (608)
                      |+.+.-.+.|++|+...|...+-...-+.+                                    .-+..|...|....
T Consensus       336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI  415 (677)
T KOG1915|consen  336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI  415 (677)
T ss_pred             CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence            999999999999988777643221111100                                    00222333333444


Q ss_pred             HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY  589 (608)
Q Consensus       510 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~  589 (608)
                      ++.+...|.+.+..|+..+|.+ .++-....+-.++++++.....|++-|+..|.+..+|...|.+-..+|+.+.|...|
T Consensus       416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif  494 (677)
T KOG1915|consen  416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF  494 (677)
T ss_pred             HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4444444444444444444432 222223333344455555555555555555555555555555555555555555555


Q ss_pred             HHHHH
Q 040048          590 EILKK  594 (608)
Q Consensus       590 ~~al~  594 (608)
                      +-|+.
T Consensus       495 elAi~  499 (677)
T KOG1915|consen  495 ELAIS  499 (677)
T ss_pred             HHHhc
Confidence            54443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.41  E-value=4.4e-12  Score=110.54  Aligned_cols=105  Identities=11%  Similarity=0.144  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      +..+.+|..++..|++++|...|+-+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.|++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            34458999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhC---CCCHHHH
Q 040048          579 IEKWEASMQDYEILKKEA---PDDEEVD  603 (608)
Q Consensus       579 ~g~~~~A~~~~~~al~l~---P~~~~~~  603 (608)
                      .|+.+.|++.|+.++...   |.+..++
T Consensus       116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~  143 (157)
T PRK15363        116 CDNVCYAIKALKAVVRICGEVSEHQILR  143 (157)
T ss_pred             cCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence            999999999999999987   4444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=6.5e-11  Score=109.09  Aligned_cols=182  Identities=16%  Similarity=0.075  Sum_probs=159.5

Q ss_pred             HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048          373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNA  452 (608)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~  452 (608)
                      ...+-.........+..+.|..++.......|.+ ..+..+.|..+...|.+++|+++|+..++-+|.+          .
T Consensus        52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----------~  120 (289)
T KOG3060|consen   52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD----------T  120 (289)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch----------h
Confidence            3444455666777888999999999988888776 5788888999999999999999999999999985          6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS  532 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  532 (608)
                      .++...--+.-.+|+.-+|++.+...++..+.+.++|.            .++.+|...|+|++|.-+|++.+-+.|.++
T Consensus       121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~------------eLaeiY~~~~~f~kA~fClEE~ll~~P~n~  188 (289)
T KOG3060|consen  121 VIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH------------ELAEIYLSEGDFEKAAFCLEELLLIQPFNP  188 (289)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH------------HHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence            66777777788899999999999999999999999997            899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          533 VLLCNRAACRSKLG---QFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       533 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      ..+..+|.+++-+|   ++.-|.++|.++++++|.+..+++.+-.+..
T Consensus       189 l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  189 LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence            99999999998877   5678999999999999988888877655543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.39  E-value=1.2e-10  Score=123.42  Aligned_cols=276  Identities=12%  Similarity=0.054  Sum_probs=196.7

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 040048          297 KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAH  376 (608)
Q Consensus       297 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~  376 (608)
                      +.+++.....++...|++++|++++++....-.+...+.-..|.++..+|++++|...|...+. .+|++......+...
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPdn~~Yy~~L~~~   81 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPDNYDYYRGLEEA   81 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHH
Confidence            3567788889999999999999999999888888899999999999999999999999999999 999984333332222


Q ss_pred             HHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH-HHHHhhcCCCCCCcccccccCCCCcHHHH
Q 040048          377 LNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE-ADETLKNGPNFDVDETTRFFGPIGNANLL  455 (608)
Q Consensus       377 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e-A~~~l~~al~~~p~~~~~~~~~~~~~~~~  455 (608)
                      ...-. -....+.......|+......|.....  ..+...+..-..+.. +..++...+...            .+.++
T Consensus        82 ~g~~~-~~~~~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------------vPslF  146 (517)
T PF12569_consen   82 LGLQL-QLSDEDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKG------------VPSLF  146 (517)
T ss_pred             Hhhhc-ccccccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcC------------CchHH
Confidence            21111 011224566677777777777654321  111111111122322 233334444321            25566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---C----------CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          456 VVRAQVNLACGRFEDALAAIQKAAKQ---D----------SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG  522 (608)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~---~----------p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~  522 (608)
                      ..+-.+|....+..-....+......   .          ...+...        +.+++.++..|...|++++|+.+.+
T Consensus       147 ~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~--------lw~~~~lAqhyd~~g~~~~Al~~Id  218 (517)
T PF12569_consen  147 SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL--------LWTLYFLAQHYDYLGDYEKALEYID  218 (517)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH--------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            66666665444333333333332221   1          1112221        2345689999999999999999999


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       523 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ++|+..|..++.|...|.++-..|++.+|.++++.|-.+++.+-......+..+.+.|+.++|.+.+....+.+
T Consensus       219 ~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  219 KAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999999999998888899999999999999999888776554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.37  E-value=1.1e-10  Score=108.82  Aligned_cols=176  Identities=18%  Similarity=0.132  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCC
Q 040048          283 ALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEA  362 (608)
Q Consensus       283 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  362 (608)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..+.++.. +
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l  129 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-L  129 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-c
Confidence            445555555666666666 66666666666666666666666666666666666666666666666666666666665 5


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccc
Q 040048          363 DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET  442 (608)
Q Consensus       363 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~  442 (608)
                      .|++                                                                            
T Consensus       130 ~p~d----------------------------------------------------------------------------  133 (257)
T COG5010         130 APTD----------------------------------------------------------------------------  133 (257)
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            5544                                                                            


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          443 TRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG  522 (608)
Q Consensus       443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~  522 (608)
                               .++|..+|.+|.+.|++++|...|.+++++.|.++.+..            ++|..+.-.|+++.|..++.
T Consensus       134 ---------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n------------Nlgms~~L~gd~~~A~~lll  192 (257)
T COG5010         134 ---------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN------------NLGMSLLLRGDLEDAETLLL  192 (257)
T ss_pred             ---------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh------------hHHHHHHHcCCHHHHHHHHH
Confidence                     566666777777777777777777777777777766665            66777777777777777777


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA  557 (608)
Q Consensus       523 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  557 (608)
                      ++....+.+..+..+++.+....|++++|.....+
T Consensus       193 ~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         193 PAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            77666666667777777777777777776665544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.36  E-value=8.4e-11  Score=129.15  Aligned_cols=140  Identities=14%  Similarity=0.020  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048          408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE  487 (608)
Q Consensus       408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  487 (608)
                      ..++.++|.+....|++++|...++.++++.|++          ..++..++.++.+.+++++|+..+++++..+|++..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~  155 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR  155 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence            4566667777777777777777777777777764          788888999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                      ...            .+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-..
T Consensus       156 ~~~------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~  223 (694)
T PRK15179        156 EIL------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR  223 (694)
T ss_pred             HHH------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence            876            88899999999999999999999888888999999999999999999999999999988766555


Q ss_pred             HH
Q 040048          568 AR  569 (608)
Q Consensus       568 a~  569 (608)
                      .|
T Consensus       224 ~~  225 (694)
T PRK15179        224 KL  225 (694)
T ss_pred             HH
Confidence            54

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.35  E-value=2.2e-11  Score=107.30  Aligned_cols=119  Identities=23%  Similarity=0.252  Sum_probs=109.8

Q ss_pred             HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048          429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL  508 (608)
Q Consensus       429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~  508 (608)
                      ..|++++..+|++          ..+.+.+|..+...|++++|+..+++++..+|.+..++.            .+|.++
T Consensus         4 ~~~~~~l~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------~la~~~   61 (135)
T TIGR02552         4 ATLKDLLGLDSEQ----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWL------------GLAACC   61 (135)
T ss_pred             hhHHHHHcCChhh----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHH
Confidence            3566777778774          788999999999999999999999999999999988886            899999


Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048          509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  569 (608)
                      ...|++++|+.+|++++..+|+++..++.+|.++...|++++|+..|+++++++|++....
T Consensus        62 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            9999999999999999999999999999999999999999999999999999999886643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.35  E-value=2.3e-11  Score=127.04  Aligned_cols=222  Identities=14%  Similarity=0.055  Sum_probs=147.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |+.+..-..+|..++..|-...|+..|++        ...|-....||...|+..+|.....+-++ .|.++..|..+|.
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD  465 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence            55566677889999999999999999987        36677788899999999999999999888 6777888888888


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      +....--|++|.+..+..-.             .+...++......++|.++.++++..++++|-. ...|+.+|.+..+
T Consensus       466 v~~d~s~yEkawElsn~~sa-------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf~~G~~ALq  531 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISA-------------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWFGLGCAALQ  531 (777)
T ss_pred             hccChHHHHHHHHHhhhhhH-------------HHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHHhccHHHHH
Confidence            88877778888877765422             233334444444566666666666666665544 3455555555555


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      +++++.|...|..++.++|+.          .++|.+++..|+..++-.+|...+.++++.+-++..+|.          
T Consensus       532 lek~q~av~aF~rcvtL~Pd~----------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE----------  591 (777)
T KOG1128|consen  532 LEKEQAAVKAFHRCVTLEPDN----------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE----------  591 (777)
T ss_pred             HhhhHHHHHHHHHHhhcCCCc----------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee----------
Confidence            566666666665555555553          555555555555555555565555555555555555554          


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                        +.-.+..+.|.+++|+..|.+.+.+
T Consensus       592 --Nymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  592 --NYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             --chhhhhhhcccHHHHHHHHHHHHHh
Confidence              3344555555556665555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.34  E-value=2e-11  Score=106.44  Aligned_cols=100  Identities=21%  Similarity=0.110  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      +.+-+.++.+|..++..|++++|...|+-+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++..++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            55678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCC
Q 040048          341 LYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~  360 (608)
                      |++..|+.+.|++.|+.++.
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999987

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.29  E-value=4.3e-11  Score=122.91  Aligned_cols=105  Identities=29%  Similarity=0.487  Sum_probs=101.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      ...|..++..|+|++|+.+|++++.++|+++.+|+++|.+|..+|++++|+.++++++.++|+++.+|+.+|.+|..+|+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          582 WEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       582 ~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      +++|+..|+++++++|++..+...+
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999987655

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=1.6e-09  Score=101.92  Aligned_cols=293  Identities=12%  Similarity=0.012  Sum_probs=213.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY  353 (608)
Q Consensus       274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  353 (608)
                      +.+..+|++|++++..-.+..|.+-..+..+|.||+...+|..|..+|++.-.+.|......+..+..++..+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048          354 HFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA-DSAPQIYALQAEALLKLHKHQEADETLK  432 (608)
Q Consensus       354 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~la~~~~~~g~~~eA~~~l~  432 (608)
                      ....... . +.-.     -...-..+.+....+|+..+....    +.-| ..........|.+..+.|++++|..-|+
T Consensus       100 V~~~~~D-~-~~L~-----~~~lqLqaAIkYse~Dl~g~rsLv----eQlp~en~Ad~~in~gCllykegqyEaAvqkFq  168 (459)
T KOG4340|consen  100 VAFLLLD-N-PALH-----SRVLQLQAAIKYSEGDLPGSRSLV----EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ  168 (459)
T ss_pred             HHHHhcC-C-HHHH-----HHHHHHHHHHhcccccCcchHHHH----HhccCCCccchhccchheeeccccHHHHHHHHH
Confidence            9887654 1 2111     111122223333445555444333    3334 3556788889999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--------hHHH-----HHHHHH
Q 040048          433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD----SNN--------KEVN-----MVMRKA  495 (608)
Q Consensus       433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--------~~~~-----~~l~~~  495 (608)
                      .+++...-          ++.+-++++.+++..++++.|+++..++++..    |.-        +++.     ..+...
T Consensus       169 aAlqvsGy----------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  169 AALQVSGY----------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             HHHhhcCC----------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence            99987553          26778889999999999999999988887632    221        1111     111222


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA  573 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la  573 (608)
                      ..+++++..+-++++.++++.|.+.+...--...  -++..+.+++..- ..+++.+...-+.-.+.++|--.+.+-++-
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlL  317 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLL  317 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence            3466778889999999999999887654432211  2456667776543 345666667777777777776566777777


Q ss_pred             HHHHHcCCHHHHHHH
Q 040048          574 DCFAKIEKWEASMQD  588 (608)
Q Consensus       574 ~~~~~~g~~~~A~~~  588 (608)
                      .+|.+..-|+-|.+.
T Consensus       318 llyCKNeyf~lAADv  332 (459)
T KOG4340|consen  318 LLYCKNEYFDLAADV  332 (459)
T ss_pred             HHHhhhHHHhHHHHH
Confidence            777776666655543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.26  E-value=5.6e-09  Score=122.13  Aligned_cols=319  Identities=13%  Similarity=-0.029  Sum_probs=218.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHH
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAI-SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH---------YHRAHH  336 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~  336 (608)
                      +...|..+...|++..+..++..+- .....++.....++.++...|++++|...+..+....+.         ......
T Consensus       377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~  456 (903)
T PRK04841        377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA  456 (903)
T ss_pred             HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence            3334555555666665555544320 111223445567788888999999999999988764321         133556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC-----ChHHHH
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD-----SAPQIY  411 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~  411 (608)
                      .++.++...|++++|...+++++. ..+... ..........++..+...|+++.|...+.+++.....     .....+
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~-~~~~~~-~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~  534 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALA-ELPLTW-YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL  534 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh-cCCCcc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            678899999999999999999986 333321 1223345567888889999999999999999865321     123456


Q ss_pred             HHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048          412 ALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV  491 (608)
Q Consensus       412 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  491 (608)
                      ..+|.++...|++++|...+++++.........  .......++..+|.++...|++++|...+.+++..........  
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--  610 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ--  610 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH--
Confidence            778999999999999999999887653221000  0000134466789999999999999999999988654321111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLC----NRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                           .+..+..+|.++...|++++|...+.++..+....   .....    .....+...|+.+.|..++.......+.
T Consensus       611 -----~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~  685 (903)
T PRK04841        611 -----QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA  685 (903)
T ss_pred             -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc
Confidence                 11234478999999999999999999997653221   11111    1234556689999999998876653322


Q ss_pred             CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          565 YS----KARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       565 ~~----~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ..    ..+..+|.++...|++++|...+++++...
T Consensus       686 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~  721 (903)
T PRK04841        686 NNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA  721 (903)
T ss_pred             cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            22    225688999999999999999999999863

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.22  E-value=3.1e-10  Score=97.33  Aligned_cols=107  Identities=15%  Similarity=0.121  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRA  573 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la  573 (608)
                      .++.+|..+...|++++|+..|.+++...|++   ..+++.+|.++...|++++|+.+|++++...|++   +.+++.+|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            45689999999999999999999999998876   5789999999999999999999999999998885   67899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          574 DCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .++..+|++++|+.+|+++++..|++..+...+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999999999999999999999999999887664

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.21  E-value=3.2e-10  Score=116.48  Aligned_cols=114  Identities=24%  Similarity=0.283  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 040048          455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVL  534 (608)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~  534 (608)
                      +...|..++..|++++|+..|.+++.++|++..++.            .+|.++...|++++|+..+++++.++|.++.+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~------------~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a   72 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYA------------DRAQANIKLGNFTEAVADANKAIELDPSLAKA   72 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence            566789999999999999999999999999988876            89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      |+.+|.++..+|++++|+..|++++.++|++..+...++.|..++.
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998876663

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.18  E-value=4.5e-10  Score=111.36  Aligned_cols=234  Identities=19%  Similarity=0.194  Sum_probs=168.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP--HYHRAHHRLAN  340 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~  340 (608)
                      +.+..+.+.+++..+|+++..+.-...   ..+....+...++..+...++.+.++..++..+....  .++......|.
T Consensus        34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~  110 (290)
T PF04733_consen   34 KLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT  110 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            355678889999999999877654433   2222344556666666555677778877776654332  34456667778


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      ++...|++++|++.+.+.-.                                               .+.......+++.
T Consensus       111 i~~~~~~~~~AL~~l~~~~~-----------------------------------------------lE~~al~Vqi~L~  143 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKGGS-----------------------------------------------LELLALAVQILLK  143 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTTTC-----------------------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHccCc-----------------------------------------------ccHHHHHHHHHHH
Confidence            88888999999987765422                                               2445556778888


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG--RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV  498 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  498 (608)
                      +++++.|.+.++.+.+.+.+.          .-+.+..+++.+..|  ++.+|.-.|++.....+..+....        
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln--------  205 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDS----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN--------  205 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCH----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH--------
T ss_pred             cCCHHHHHHHHHHHHhcCCcH----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH--------
Confidence            888888888888877776653          444445555665555  589999999998777766665554        


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHH
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF-EKAIEDCNAALNVRPGYSKA  568 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~a  568 (608)
                          .++.++..+|+|++|...+.+++..+|.++.++.+++.+...+|+. +.+.+++.+....+|+++..
T Consensus       206 ----g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  206 ----GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             ----HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             ----HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence                8899999999999999999999999999999999999999999998 66778888888889998754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.18  E-value=5.2e-09  Score=105.56  Aligned_cols=159  Identities=25%  Similarity=0.270  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .-+.++|..+..++..|++++|+..++..+...|+++.++...+.++...++..+|++.+++++.++|+....+..+|..
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a  383 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA  383 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |...|++.+|+..++..+. -+|++                                         +..|..++..|..+
T Consensus       384 ll~~g~~~eai~~L~~~~~-~~p~d-----------------------------------------p~~w~~LAqay~~~  421 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLF-NDPED-----------------------------------------PNGWDLLAQAYAEL  421 (484)
T ss_pred             HHhcCChHHHHHHHHHHhh-cCCCC-----------------------------------------chHHHHHHHHHHHh
Confidence            5555555555555555554 44444                                         57888888888888


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN  489 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  489 (608)
                      |+..+|                           ....+..|...|++++|+..+..+.+...-+...|
T Consensus       422 g~~~~a---------------------------~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~  462 (484)
T COG4783         422 GNRAEA---------------------------LLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDW  462 (484)
T ss_pred             CchHHH---------------------------HHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence            875444                           44467778888999999999999888774444333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=3e-09  Score=100.12  Aligned_cols=260  Identities=15%  Similarity=0.105  Sum_probs=202.6

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh
Q 040048          308 LIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR  387 (608)
Q Consensus       308 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~  387 (608)
                      +++..+|..|++++..-.+..|.+..++..||.||+...+|..|..+|++.-. +.|..      ....+..+....+.+
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-l~P~~------~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-LHPEL------EQYRLYQAQSLYKAC   92 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hChHH------HHHHHHHHHHHHHhc
Confidence            36778999999999999999999999999999999999999999999999877 66765      455555667777788


Q ss_pred             cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048          388 DWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR  467 (608)
Q Consensus       388 ~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~  467 (608)
                      .+.+|+.....+... +........+.+-+....+++..+....++....+            .+....+.|.+.++.|+
T Consensus        93 i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------------~Ad~~in~gCllykegq  159 (459)
T KOG4340|consen   93 IYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------------EADGQINLGCLLYKEGQ  159 (459)
T ss_pred             ccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC------------ccchhccchheeecccc
Confidence            888888877665543 43344566677778888889988888888776322            37788889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCC------------
Q 040048          468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----DPYN------------  531 (608)
Q Consensus       468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~------------  531 (608)
                      ++.|++-|+.+++...-++..-.            +++.++++.++++.|+++..+.++.    .|..            
T Consensus       160 yEaAvqkFqaAlqvsGyqpllAY------------niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr  227 (459)
T KOG4340|consen  160 YEAAVQKFQAALQVSGYQPLLAY------------NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR  227 (459)
T ss_pred             HHHHHHHHHHHHhhcCCCchhHH------------HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence            99999999999998877776654            8999999999999999988777653    3321            


Q ss_pred             -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          532 -------------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG-----YSKARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       532 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                                   .++++..+.++++.|+++.|.+.+..   +-|.     ++..+.+++..-. .+++.+..+-+.-.+
T Consensus       228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL  303 (459)
T KOG4340|consen  228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL  303 (459)
T ss_pred             cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH
Confidence                         35677788899999999998876643   3332     4566777765433 466777777788888


Q ss_pred             HhCCCCHHHH
Q 040048          594 KEAPDDEEVD  603 (608)
Q Consensus       594 ~l~P~~~~~~  603 (608)
                      +++|--++..
T Consensus       304 ~~nPfP~ETF  313 (459)
T KOG4340|consen  304 QQNPFPPETF  313 (459)
T ss_pred             hcCCCChHHH
Confidence            8888555543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.16  E-value=1.6e-07  Score=97.18  Aligned_cols=322  Identities=15%  Similarity=0.119  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-----------------  327 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----------------  327 (608)
                      .+|-..-......|-.+-++..|++.|+.+|...   ......+...+++++|.+.+...+..                 
T Consensus       139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e  215 (835)
T KOG2047|consen  139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE  215 (835)
T ss_pred             cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence            3444444444445555566666666666665542   33344556677777777776665432                 


Q ss_pred             -------CCCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCc-hhHHHHHHH-----
Q 040048          328 -------EPHY---------------------HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQ-VDIAKAKSL-----  373 (608)
Q Consensus       328 -------~p~~---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p-~~~~~~~~~-----  373 (608)
                             +|+.                     ...|..||..|.+.|.+++|...|++++...-. .+.......     
T Consensus       216 lcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE  295 (835)
T KOG2047|consen  216 LCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE  295 (835)
T ss_pred             HHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH
Confidence                   2211                     336889999999999999999999998762211 111110000     


Q ss_pred             -------------------------------HHHHHHhHHH---------------------HHhhcHHHHHHHHHHHHH
Q 040048          374 -------------------------------QAHLNKCTDA---------------------KRTRDWNTLIQETRAAIA  401 (608)
Q Consensus       374 -------------------------------~~~~~~~~~~---------------------~~~~~~~~A~~~~~~al~  401 (608)
                                                     +.+.++..++                     ...++..+-+..|.+++.
T Consensus       296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~  375 (835)
T KOG2047|consen  296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK  375 (835)
T ss_pred             HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH
Confidence                                           0011111110                     112445555666666664


Q ss_pred             c-CC----CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          402 G-GA----DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ  476 (608)
Q Consensus       402 ~-~~----~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (608)
                      . +|    .....+|..+|..|...|+.+.|...|+++.+..-...+      ..+.+|...|..-++..+++.|+.+++
T Consensus       376 ~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~------dLa~vw~~waemElrh~~~~~Al~lm~  449 (835)
T KOG2047|consen  376 TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE------DLAEVWCAWAEMELRHENFEAALKLMR  449 (835)
T ss_pred             ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH------HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3 33    344578999999999999999999999999987533221      237899999999999999999999999


Q ss_pred             HHHHhCCCCh--------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH
Q 040048          477 KAAKQDSNNK--------EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF  548 (608)
Q Consensus       477 ~al~~~p~~~--------~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  548 (608)
                      ++...-....        .+..  +..+.+..|...+......|-++.-...|++.+++.--.|....+.|..+....-+
T Consensus       450 ~A~~vP~~~~~~~yd~~~pvQ~--rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf  527 (835)
T KOG2047|consen  450 RATHVPTNPELEYYDNSEPVQA--RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF  527 (835)
T ss_pred             hhhcCCCchhhhhhcCCCcHHH--HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence            9876432211        1111  11234555667777888888888888888888888777788888888888888888


Q ss_pred             HHHHHHHHHHHhcC--CCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          549 EKAIEDCNAALNVR--PGYSKARLR---RADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       549 ~~A~~~~~~al~~~--p~~~~a~~~---la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      ++|.+.|++.+.+.  |...+.|..   ....-+.--+.+.|...|++|++..|
T Consensus       528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            88888888888874  444455532   22223333467888888888888877

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.16  E-value=1.5e-09  Score=108.10  Aligned_cols=148  Identities=14%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048          452 ANLLVVRAQVNLAC-GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       452 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  530 (608)
                      +..+..+|.+|... |++++|+++|++++.+.........      ....+..+|.++...|+|++|+..|++.....-+
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            56667789999998 9999999999999987544332221      2334568999999999999999999999875322


Q ss_pred             C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Q 040048          531 N-------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS-----KARLRRADCFAK--IEKWEASMQDYEILKKEA  596 (608)
Q Consensus       531 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~--~g~~~~A~~~~~~al~l~  596 (608)
                      +       ...++..+.|++..|++..|...|++....+|...     .....|-.++..  ...+.+|+..|....+++
T Consensus       188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred             ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence            1       24567788899999999999999999999998653     333444444433  457889999998888887


Q ss_pred             CCCHHHHHH
Q 040048          597 PDDEEVDQA  605 (608)
Q Consensus       597 P~~~~~~~~  605 (608)
                      |--..+...
T Consensus       268 ~w~~~~l~~  276 (282)
T PF14938_consen  268 NWKTKMLLK  276 (282)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            755544433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.16  E-value=7.1e-08  Score=99.78  Aligned_cols=316  Identities=14%  Similarity=0.109  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CChhHH-----HHHHHHHHHcC-------------CHHHHHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDP---NKASYR-----SNKTAALIALG-------------RLLEAVFECRE  323 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~-----~~la~~~~~~g-------------~~~eA~~~~~~  323 (608)
                      -.|..||..|.+.|.|++|...|++++..--   +...++     +.-..+-..++             +.+-....|+.
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~  328 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES  328 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence            4688999999999999999999999997532   222111     11111111111             23334445555


Q ss_pred             HHh------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048          324 AIR------------IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       324 al~------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (608)
                      .+.            .+|++..-|.....+  ..|+..+-+..|.+++..++|... ....-..+...+..|...|+.+.
T Consensus       329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka-~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKA-VGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccC-CCChhhHHHHHHHHHHhcCcHHH
Confidence            443            467777777665554  468899999999999887887653 33345677888999999999999


Q ss_pred             HHHHHHHHHHcCCC---ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCC--------CCcHHHHHHHHH
Q 040048          392 LIQETRAAIAGGAD---SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGP--------IGNANLLVVRAQ  460 (608)
Q Consensus       392 A~~~~~~al~~~~~---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~--------~~~~~~~~~la~  460 (608)
                      |...++++....-.   +...+|..-|..-+...+++.|+.+++.+...-......+++.        .....+|..++.
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            99999999987543   3467889999999999999999999999886533312122221        134678888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--CCCHHHHHHH
Q 040048          461 VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--PYNSVLLCNR  538 (608)
Q Consensus       461 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l  538 (608)
                      +....|-++.....|++++.+.--.+....            +.|..+....-++++.+.|++.+.+.  |...++|...
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~------------NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY  553 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIII------------NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY  553 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHH------------HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence            999999999999999999998777777665            77888888888999999999999874  3444555432


Q ss_pred             ---HHHHHHcCCHHHHHHHHHHHHhcCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          539 ---AACRSKLGQFEKAIEDCNAALNVRPGY-S-KARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       539 ---a~~~~~~g~~~~A~~~~~~al~~~p~~-~-~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                         ....+.--..+.|...|++|++..|.. . ..|+..|.+-.+-|--..|+..|++|-.-
T Consensus       554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence               222233346889999999999988742 2 34455666666677777777777776543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.16  E-value=3.8e-09  Score=101.99  Aligned_cols=317  Identities=15%  Similarity=0.055  Sum_probs=230.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCC--HHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIE----PHY--HRA  334 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~--~~~  334 (608)
                      +......|.-++...++++|+..+.+.+..-.+..   ..+-.+..+...+|.|++++.+.-..+...    ...  -++
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea   85 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA   85 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566778889999999999999999887654432   234555677888999998877665544432    211  457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC-----CCChHH
Q 040048          335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG-----ADSAPQ  409 (608)
Q Consensus       335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~  409 (608)
                      +.+++..+....++.+++.+-+..+. +...... .........++.....++.++++++.|+.++...     +-..-.
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~-lpgt~~~-~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLG-LPGTRAG-QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCcc-cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            88999999999999999988777665 4333321 2223566668888888999999999999998763     223346


Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhcCCCCCCc----ccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 040048          410 IYALQAEALLKLHKHQEADETLKNGPNFDVD----ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-  484 (608)
Q Consensus       410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-  484 (608)
                      ++..+|.++..+.++++|+-+..++.++...    +...-+    ...+++.++..+..+|+.-+|.++.+++.++.-. 
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky----r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY----RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH  239 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH----HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            7889999999999999999988888765322    211111    2667888999999999999999999999876432 


Q ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHcCCHHH-----HH
Q 040048          485 -NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP------YNSVLLCNRAACRSKLGQFEK-----AI  552 (608)
Q Consensus       485 -~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~-----A~  552 (608)
                       +....        +..+..+|++|...|+.+.|..-|+.|+..-.      ....++...|.++....-..+     |+
T Consensus       240 Gdra~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Cral  311 (518)
T KOG1941|consen  240 GDRALQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRAL  311 (518)
T ss_pred             CChHHH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence             22221        23345889999999999999999999987522      124566677777766554444     89


Q ss_pred             HHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          553 EDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       553 ~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      +.-++++++...      ....+..++.+|..+|.-++=...+..+-+
T Consensus       312 e~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  312 EFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            988888887543      246778999999999888777777666544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=2.3e-09  Score=108.14  Aligned_cols=141  Identities=21%  Similarity=0.144  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ..+++..+..++..|++++|+..++..+...|+++..+.            ..+.+++..++..+|++.+++++..+|+.
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~------------~~~~i~~~~nk~~~A~e~~~kal~l~P~~  373 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLE------------LAGDILLEANKAKEAIERLKKALALDPNS  373 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence            788899999999999999999999999999999998886            78999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      +.++.++|.+|.+.|++.+|+..++..+..+|+++..|..||+.|..+|+..+|...+-+...+...-.++..
T Consensus       374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~  446 (484)
T COG4783         374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII  446 (484)
T ss_pred             cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999988777777766666666555444433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.15  E-value=8.7e-09  Score=99.68  Aligned_cols=186  Identities=11%  Similarity=-0.006  Sum_probs=139.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY---RSNKTAALIALGRLLEAVFECREAIRIEPHY---HRA  334 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~  334 (608)
                      ..+++.++..|..++..|+|++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++.+|++   +.+
T Consensus        29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            3578889999999999999999999999999999998655   5899999999999999999999999999887   568


Q ss_pred             HHHHHHHHHHcCC------------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHH
Q 040048          335 HHRLANLYLRLGE------------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQET  396 (608)
Q Consensus       335 ~~~la~~~~~~g~------------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  396 (608)
                      ++.+|.++..++.                  ..+|+..|++.+. ..|+.......-.                 -+..+
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-~yP~S~ya~~A~~-----------------rl~~l  170 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-GYPNSQYTTDATK-----------------RLVFL  170 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-HCcCChhHHHHHH-----------------HHHHH
Confidence            8999988755541                  2456677777776 5555521111100                 00000


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          397 RAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ  476 (608)
Q Consensus       397 ~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  476 (608)
                      ...+       ..--..+|..|.+.|.|..|+.-++.+++..|+...       ..+++..++..|..+|..++|.....
T Consensus       171 ~~~l-------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~-------~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        171 KDRL-------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA-------TRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHH-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch-------HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            0000       122345688888999999999999999888887432       37889999999999999999987765


Q ss_pred             HH
Q 040048          477 KA  478 (608)
Q Consensus       477 ~a  478 (608)
                      ..
T Consensus       237 ~l  238 (243)
T PRK10866        237 II  238 (243)
T ss_pred             HH
Confidence            43

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.15  E-value=1.9e-11  Score=116.74  Aligned_cols=240  Identities=18%  Similarity=0.170  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG  346 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  346 (608)
                      +...|+.|+++|.|++|+.||.+++..+|.++..+.+++.+|+++..|..|...|..++.++..+..+|.+.+.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048          347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE  426 (608)
Q Consensus       347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e  426 (608)
                      ...+|.+.++.++. +.|.......                                             .+.......+
T Consensus       180 ~~~EAKkD~E~vL~-LEP~~~ELkK---------------------------------------------~~a~i~Sl~E  213 (536)
T KOG4648|consen  180 NNMEAKKDCETVLA-LEPKNIELKK---------------------------------------------SLARINSLRE  213 (536)
T ss_pred             hHHHHHHhHHHHHh-hCcccHHHHH---------------------------------------------HHHHhcchHh
Confidence            99999999999998 8887621100                                             0000000111


Q ss_pred             HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048          427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN  506 (608)
Q Consensus       427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~  506 (608)
                      +.-. .++   .|                          | +-+|..-..+++.+                    ..-|.
T Consensus       214 ~~I~-~Ks---T~--------------------------G-~~~A~Q~~~Q~l~~--------------------K~~G~  242 (536)
T KOG4648|consen  214 RKIA-TKS---TP--------------------------G-FTPARQGMIQILPI--------------------KKPGY  242 (536)
T ss_pred             hhHH-hhc---CC--------------------------C-CCccccchhhhccc--------------------cCcch
Confidence            1000 000   00                          1 11222222222211                    13466


Q ss_pred             HHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          507 ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM  586 (608)
Q Consensus       507 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  586 (608)
                      .+...|.++.++.+|.+-+..+..+..+-.+ +..|.+.-++++|+..+.+++..+|.........+.+---.|...++.
T Consensus       243 ~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K  321 (536)
T KOG4648|consen  243 KFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVK  321 (536)
T ss_pred             hhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcC
Confidence            7778889999999998887776665555445 778888889999999999999998887777777777777778889999


Q ss_pred             HHHHHHHHhCCCCHHHHH
Q 040048          587 QDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       587 ~~~~~al~l~P~~~~~~~  604 (608)
                      ..++.++.+.|.+.....
T Consensus       322 ~~~~T~~~~~P~~~~~~~  339 (536)
T KOG4648|consen  322 PTKQTAVKVAPAVETPKE  339 (536)
T ss_pred             cchhheeeeccccccchh
Confidence            999999999998776544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.5e-10  Score=110.50  Aligned_cols=106  Identities=29%  Similarity=0.502  Sum_probs=97.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPY----N-----------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  566 (608)
                      ...|..+++.|+|..|...|++++..-..    +           ..++.+++.|+.++++|.+|+..+.++|+++|++.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            47899999999999999999999875221    1           34788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      .++|+.|.++..+|+++.|+..|+++++++|+|.++...|.
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~  332 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI  332 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999988764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.13  E-value=2.4e-10  Score=87.66  Aligned_cols=67  Identities=24%  Similarity=0.360  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 040048          531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE-KWEASMQDYEILKKEAP  597 (608)
Q Consensus       531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~l~P  597 (608)
                      ++..|..+|.++...|++++|+.+|+++++++|+++.+|+++|.+|..+| ++++|+++|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57788999999999999999999999999999999999999999999998 79999999999999988

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.11  E-value=2.7e-10  Score=87.39  Aligned_cols=67  Identities=28%  Similarity=0.530  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEP  329 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p  329 (608)
                      ++..|..+|.+++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57899999999999999999999999999999999999999999999999 79999999999999987

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.11  E-value=1.1e-09  Score=88.91  Aligned_cols=98  Identities=33%  Similarity=0.476  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      ++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 040048          581 KWEASMQDYEILKKEAPD  598 (608)
Q Consensus       581 ~~~~A~~~~~~al~l~P~  598 (608)
                      ++++|..++.++++.+|+
T Consensus        83 ~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          83 KYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHccCCC
Confidence            999999999999998874

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.10  E-value=6.3e-09  Score=100.48  Aligned_cols=289  Identities=14%  Similarity=0.077  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 040048          300 YRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAH  376 (608)
Q Consensus       300 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~  376 (608)
                      -....|.-++...++++|+..+.+.+..-.+.   ...+-.+..+..++|.|++++..--..+. ...+-........++
T Consensus         8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~-~a~~~~ds~~~~ea~   86 (518)
T KOG1941|consen    8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID-TARELEDSDFLLEAY   86 (518)
T ss_pred             HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34566777888899999999999988754433   23455567788899999998876544433 222233344567889


Q ss_pred             HHHhHHHHHhhcHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048          377 LNKCTDAKRTRDWNTLIQETRAAIAGGA----DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNA  452 (608)
Q Consensus       377 ~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~  452 (608)
                      .+++..+.+..++.+++.+-+..+....    .........++.++..++.++++++.|+.+++...+..+...    ..
T Consensus        87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L----El  162 (518)
T KOG1941|consen   87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML----EL  162 (518)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee----ee
Confidence            9999999999999999998888776532    222366777999999999999999999999987665444333    37


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK-EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----  527 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----  527 (608)
                      .++..+|.++....++++|+.+..++.++..... .-|..   .....+++.++..+..+|+...|.++++++.++    
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~---kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL---KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH  239 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH---HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999988754432 11111   112345578999999999999999999999876    


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHH
Q 040048          528 --DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEA-----SMQDYEILKK  594 (608)
Q Consensus       528 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~-----A~~~~~~al~  594 (608)
                        .+..+..+.-+|.+|...|+.+.|..-|+.|......      ...++...|.++....-..+     |++.-+++++
T Consensus       240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~le  319 (518)
T KOG1941|consen  240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLE  319 (518)
T ss_pred             CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence              2334567788999999999999999999999876432      24556666666655444443     7777777776


Q ss_pred             hC
Q 040048          595 EA  596 (608)
Q Consensus       595 l~  596 (608)
                      +.
T Consensus       320 vA  321 (518)
T KOG1941|consen  320 VA  321 (518)
T ss_pred             HH
Confidence            53

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=1.6e-09  Score=96.31  Aligned_cols=110  Identities=37%  Similarity=0.659  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN-----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR  572 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  572 (608)
                      +..+..-|+-++..|+|++|..-|..||.+.|..     ..+|.+.|.++.+++.++.|+..+.++|+++|.+..++.++
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            3444577999999999999999999999999865     46888999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          573 ADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       573 a~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      |.+|.++..|++|++.|+++++++|...+++..+.
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            99999999999999999999999999999887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.08  E-value=2e-08  Score=94.80  Aligned_cols=188  Identities=19%  Similarity=0.165  Sum_probs=133.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAH  335 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~  335 (608)
                      .+++.++..|..++..|+|.+|+..|++++...|..   ..+.+.+|.+++..|++++|+..+++.++..|++   +.++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467899999999999999999999999999998886   4679999999999999999999999999999987   4688


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH--HHHHH
Q 040048          336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP--QIYAL  413 (608)
Q Consensus       336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~  413 (608)
                      +.+|.+++.+..  ..+       . .+                    ...+...+|+..++..+...|++.-  .+...
T Consensus        83 Y~~g~~~~~~~~--~~~-------~-~~--------------------~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~  132 (203)
T PF13525_consen   83 YMLGLSYYKQIP--GIL-------R-SD--------------------RDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR  132 (203)
T ss_dssp             HHHHHHHHHHHH--HHH---------TT-----------------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred             HHHHHHHHHhCc--cch-------h-cc--------------------cChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence            888888776521  110       0 11                    1124566777788888887777631  11111


Q ss_pred             HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048          414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR  493 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  493 (608)
                      +..+-..+                              +.--+.+|..|++.|.+..|+..++.+++..|+....-.   
T Consensus       133 l~~l~~~l------------------------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~---  179 (203)
T PF13525_consen  133 LAELRNRL------------------------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEE---  179 (203)
T ss_dssp             HHHHHHHH------------------------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHH---
T ss_pred             HHHHHHHH------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHH---
Confidence            11111111                              444566899999999999999999999999999877643   


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHH
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAA  518 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~  518 (608)
                            ++..++..+.++|..+.|.
T Consensus       180 ------al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  180 ------ALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             ------HHHHHHHHHHHTT-HHHHH
T ss_pred             ------HHHHHHHHHHHhCChHHHH
Confidence                  3457888999999887543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.08  E-value=5.6e-09  Score=98.64  Aligned_cols=166  Identities=17%  Similarity=0.137  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN  484 (608)
Q Consensus       405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  484 (608)
                      +..+..++..|..++..|++.+|+..|++++...|....       ...+.+.+|.+++..|++++|+..+++.+...|+
T Consensus         2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen    2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            444567777788888888888888888888877776422       2788899999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhhcCCCCCH-----------------HHHH
Q 040048          485 NKEVNMVMRKAKGVAAARSNGNALFKQ-----------AKFSEAAAAYGDGLGLDPYNS-----------------VLLC  536 (608)
Q Consensus       485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~-----------g~~~eA~~~~~~al~~~p~~~-----------------~~~~  536 (608)
                      ++.+-.         +++.+|.+++..           +...+|+..|+..+...|++.                 .--+
T Consensus        75 ~~~~~~---------A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~  145 (203)
T PF13525_consen   75 SPKADY---------ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL  145 (203)
T ss_dssp             -TTHHH---------HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccchhh---------HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            886543         234566665443           345689999999999999862                 2234


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASM  586 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~  586 (608)
                      .+|..|.+.|.|..|+..|+.+++..|+.   .+++..++.+|.++|..+.|.
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            67899999999999999999999999987   467899999999999988554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.07  E-value=2.2e-09  Score=106.95  Aligned_cols=225  Identities=16%  Similarity=0.130  Sum_probs=141.1

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHH
Q 040048          279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP--HY----HRAHHRLANLYLRLGEVEKAI  352 (608)
Q Consensus       279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~  352 (608)
                      +|++|..+|++|              |.+|...|++++|..+|.++....-  ++    ...+...+.+|... ++++|+
T Consensus        30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai   94 (282)
T PF14938_consen   30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI   94 (282)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence            556666555554              6677777888888888877765421  11    23455555555444 777777


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-CChHHHHHHh
Q 040048          353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL-HKHQEADETL  431 (608)
Q Consensus       353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~l  431 (608)
                      .+|++++.                     ++...|++..+               ..++..+|.+|... |++++|+++|
T Consensus        95 ~~~~~A~~---------------------~y~~~G~~~~a---------------A~~~~~lA~~ye~~~~d~e~Ai~~Y  138 (282)
T PF14938_consen   95 ECYEKAIE---------------------IYREAGRFSQA---------------AKCLKELAEIYEEQLGDYEKAIEYY  138 (282)
T ss_dssp             HHHHHHHH---------------------HHHHCT-HHHH---------------HHHHHHHHHHHCCTT--HHHHHHHH
T ss_pred             HHHHHHHH---------------------HHHhcCcHHHH---------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777644                     33444555555               34556667777777 7888888888


Q ss_pred             hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 040048          432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ  511 (608)
Q Consensus       432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~  511 (608)
                      +++++....+.....    ....+..+|.++...|+|++|+..|+++....-++......     .-..+...+.+++..
T Consensus       139 ~~A~~~y~~e~~~~~----a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~-----~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  139 QKAAELYEQEGSPHS----AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS-----AKEYFLKAILCHLAM  209 (282)
T ss_dssp             HHHHHHHHHTT-HHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH-----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCChhh----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh-----HHHHHHHHHHHHHHc
Confidence            887765433221111    26778899999999999999999999998765433211100     011224678899999


Q ss_pred             CCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC
Q 040048          512 AKFSEAAAAYGDGLGLDPYN-----SVLLCNRAACRSK--LGQFEKAIEDCNAALNVRP  563 (608)
Q Consensus       512 g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p  563 (608)
                      |++..|...+++....+|..     ..+...|-.++..  ...+++|+..|.+.-.+++
T Consensus       210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            99999999999999998743     3344555555543  4568888888887666553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.07  E-value=3.2e-09  Score=97.63  Aligned_cols=118  Identities=18%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL  338 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  338 (608)
                      ..+..++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++.+.|++...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            567789999999999999999999999999987764   46899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS  406 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  406 (608)
                      |.+|...|+...+...+..++.                           .+.+|+..+++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchh
Confidence            9999999998887766666542                           4677788888888887765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.07  E-value=2e-08  Score=97.14  Aligned_cols=172  Identities=12%  Similarity=0.050  Sum_probs=140.6

Q ss_pred             CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN  484 (608)
Q Consensus       405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  484 (608)
                      +..+..++..|..+...|++++|+..|++++...|....       ...+.+.+|.+++..+++++|+..+++.++.+|+
T Consensus        29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY-------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            344667778899999999999999999999999887521       1456789999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHcC------------------CHHHHHHHHHHhhcCCCCCH--------------
Q 040048          485 NKEVNMVMRKAKGVAAARSNGNALFKQA------------------KFSEAAAAYGDGLGLDPYNS--------------  532 (608)
Q Consensus       485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~g------------------~~~eA~~~~~~al~~~p~~~--------------  532 (608)
                      ++.+-.         +++.+|.++...+                  ...+|+..|++.++..|+..              
T Consensus       102 ~~~~~~---------a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~  172 (243)
T PRK10866        102 HPNIDY---------VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD  172 (243)
T ss_pred             CCchHH---------HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence            987654         3356776654433                  13578899999999999762              


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          533 ---VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       533 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                         .--+..|..|.+.|.|..|+.-++.+++..|+.   .++++.++.+|..+|..++|.......
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence               123467888999999999999999999998875   688999999999999999998766543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.4e-09  Score=100.18  Aligned_cols=125  Identities=20%  Similarity=0.157  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC
Q 040048          467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG  546 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  546 (608)
                      ..+.-+.-++.-+..+|++.+-|.            .||.+|+..|+++.|...|.+++++.|++++.+..+|.++....
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~------------~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a  204 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWD------------LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA  204 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHH------------HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            467778888899999999999997            89999999999999999999999999999999999999987754


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          547 ---QFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       547 ---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                         ...++...|++++.++|++..+.+.||..++..|+|.+|+..++..++..|.+..-.
T Consensus       205 ~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         205 GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence               467899999999999999999999999999999999999999999999998776543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.05  E-value=3.6e-09  Score=90.67  Aligned_cols=102  Identities=20%  Similarity=0.153  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHR  337 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~  337 (608)
                      +++++.+|..++..|++++|+..|++++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            5789999999999999999999999999999886   5689999999999999999999999999998885   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          338 LANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       338 la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      +|.++...|++++|+..+.+++. ..|++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~-~~p~~  109 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIK-RYPGS  109 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHH-HCcCC
Confidence            99999999999999999999998 77776

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.1e-07  Score=88.77  Aligned_cols=166  Identities=20%  Similarity=0.177  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV  488 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  488 (608)
                      .....-|.++.+.+++++|+..+.....               .++...-..++.++.+++-|...+++..+++.+..-.
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~~~---------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt  173 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLGEN---------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT  173 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            3455557788888888888888877432               5666666778888888888888888887776553322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          489 NMVMRKAKGVAAARSNGNALF----KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                                    .+|..+.    ..+++.+|.-+|++.-+..|..+..+..++.|...+|+|++|...++.++..+++
T Consensus       174 --------------QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  174 --------------QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             --------------HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence                          2333332    2356888888888888877777888888888888889999999988888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHH
Q 040048          565 YSKARLRRADCFAKIEKWEASM-QDYEILKKEAPDDEEVD  603 (608)
Q Consensus       565 ~~~a~~~la~~~~~~g~~~~A~-~~~~~al~l~P~~~~~~  603 (608)
                      +++++.++-.+-...|.-.++. +...+....+|+++-+.
T Consensus       240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence            8888888888888888776654 44555666677766543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.05  E-value=2e-09  Score=87.23  Aligned_cols=98  Identities=33%  Similarity=0.508  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      +++.+|..++..|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCc
Q 040048          346 GEVEKAIYHFKHAGPEADQ  364 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p  364 (608)
                      |++++|...+.+++. ..|
T Consensus        82 ~~~~~a~~~~~~~~~-~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALE-LDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHc-cCC
Confidence            999999999999876 544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.04  E-value=3.8e-09  Score=97.14  Aligned_cols=101  Identities=21%  Similarity=0.279  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      .++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+.+|++++...|++..++..+|.++
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34599999999999999999999999886653   578999999999999999999999999999999999999999999


Q ss_pred             HHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 040048          577 AKIEK--------------WEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       577 ~~~g~--------------~~~A~~~~~~al~l~P~~~  600 (608)
                      ..+|+              +++|+++++++++++|++-
T Consensus       117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            99988              6889999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.04  E-value=4.5e-09  Score=96.30  Aligned_cols=125  Identities=19%  Similarity=0.158  Sum_probs=100.8

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHH
Q 040048          467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY---NSVLLCNRAACRS  543 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~~~~  543 (608)
                      .+..+...+...++..+....+.          .+..+|.++...|++++|+..|++++.+.|+   .+.++.++|.++.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~----------~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~   83 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAF----------TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT   83 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence            35556666655555444443333          3458999999999999999999999988665   3468999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHH
Q 040048          544 KLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA-------KIEKWE-------ASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       544 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~-------~~g~~~-------~A~~~~~~al~l~P~~~~  601 (608)
                      ..|++++|+.+|++++.+.|.....+..+|.++.       .+|+++       +|+.+|++++..+|++..
T Consensus        84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033         84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            9999999999999999999999999999999988       777766       677777788889986543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.03  E-value=8.1e-09  Score=94.61  Aligned_cols=84  Identities=20%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      .+..|+.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+.+|++++.++|.....+..+|
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            46788999999999999999999999999987763   458999999999999999999999999999999999999999


Q ss_pred             HHHHHcC
Q 040048          340 NLYLRLG  346 (608)
Q Consensus       340 ~~~~~~g  346 (608)
                      .++..+|
T Consensus       114 ~i~~~~~  120 (168)
T CHL00033        114 VICHYRG  120 (168)
T ss_pred             HHHHHhh
Confidence            9998444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.01  E-value=1.5e-09  Score=82.16  Aligned_cols=64  Identities=19%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      .+|..++..|++++|+..|+++++..|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5677788888888888888888888888888888888888888888888888888888888764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=2.4e-08  Score=88.99  Aligned_cols=126  Identities=20%  Similarity=0.181  Sum_probs=105.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVL  534 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~  534 (608)
                      .+......++...+...++..+...|+......         +...+|.+++..|++++|+..|+.++...|+.   ..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~---------A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen   17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAAL---------AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            334444689999999999999999999854432         23489999999999999999999999987655   457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      .+.+|.++...|++++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            88999999999999999999976 33344457788999999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=99.00  E-value=5.3e-09  Score=91.75  Aligned_cols=105  Identities=18%  Similarity=0.193  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      +..+..|.-++..|++++|..+|+-+...+|.++..|..||.|+..+|+|++|+..|..+..++++++...+..|.||..
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            34468899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          579 IEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       579 ~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      +|+.+.|+.+|+.+++ .|.+..++.
T Consensus       118 l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        118 MRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             hCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            9999999999999999 677777654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.00  E-value=9.4e-10  Score=87.97  Aligned_cols=82  Identities=27%  Similarity=0.493  Sum_probs=73.6

Q ss_pred             HcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          276 KAGNFAEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY  353 (608)
Q Consensus       276 ~~g~~~~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  353 (608)
                      .+|+|++|+.+|+++++.+|.  +..+++.+|.||+..|++++|+..+++ +..++.+...++.+|.++..+|++++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  466788899999999999999999999 88888888999999999999999999999


Q ss_pred             HHHHh
Q 040048          354 HFKHA  358 (608)
Q Consensus       354 ~~~~a  358 (608)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.99  E-value=1.2e-07  Score=105.68  Aligned_cols=247  Identities=15%  Similarity=0.041  Sum_probs=191.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048          313 RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTL  392 (608)
Q Consensus       313 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A  392 (608)
                      +-.+..+.|++.+.-+|+..-.|..+...+..+++.++|.+.++++|..+++...  ...+..|..+.......|.-+..
T Consensus      1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe--eEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE--EEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred             cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh--HHHHHHHHHHHhHHHhhCcHHHH
Confidence            3445567788888888888888888888888888888888888888876655432  22233444444444444666667


Q ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 040048          393 IQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL  472 (608)
Q Consensus       393 ~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (608)
                      .+.|+++.+....  ..+|..|..+|...+.+++|.++|+..++....          ...+|..+|..++...+-+.|.
T Consensus      1517 ~kVFeRAcqycd~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q----------~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ----------TRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred             HHHHHHHHHhcch--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----------hhhHHHHHHHHHhcccHHHHHH
Confidence            7777777765432  357888899999999999999999999886653          3889999999999999999999


Q ss_pred             HHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          473 AAIQKAAKQDSN--NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK  550 (608)
Q Consensus       473 ~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  550 (608)
                      ..+.+|++.-|.  +.+...            ..|.+.++.|+.+.+..+|+-.+..+|.-.++|.-+...-.+.|+.+.
T Consensus      1585 ~lL~rAL~~lPk~eHv~~Is------------kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFIS------------KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred             HHHHHHHhhcchhhhHHHHH------------HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH
Confidence            999999999998  444433            778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC--CCCHHHHHHHHHHHHHc-CCHHHH
Q 040048          551 AIEDCNAALNVR--PGYSKARLRRADCFAKI-EKWEAS  585 (608)
Q Consensus       551 A~~~~~~al~~~--p~~~~a~~~la~~~~~~-g~~~~A  585 (608)
                      +...|++++.+.  |.....+|..=.-|.+. |+-+..
T Consensus      1653 vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            999999999864  55555555554445443 454333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.99  E-value=1.4e-06  Score=83.05  Aligned_cols=227  Identities=32%  Similarity=0.362  Sum_probs=163.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          277 AGNFAEALALYDAAISIDPNK--ASYRSNKTAALIALGRLLEAVFECREAIR--IEPHYHRAHHRLANLYLRLGEVEKAI  352 (608)
Q Consensus       277 ~g~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~  352 (608)
                      .+.+..+...+..++...+..  .......+..+...+.+..++..+...+.  ..+.....+..++..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            577888888888888888763  67788888888889999999999888887  67777888888888888888888888


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHHcCChHHHHHHh
Q 040048          353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAE-ALLKLHKHQEADETL  431 (608)
Q Consensus       353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~-~~~~~g~~~eA~~~l  431 (608)
                      ..+..++. ..+...                                         ......+. ++...+++++|...+
T Consensus       116 ~~~~~~~~-~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~a~~~~  153 (291)
T COG0457         116 ELLEKALA-LDPDPD-----------------------------------------LAEALLALGALYELGDYEEALELY  153 (291)
T ss_pred             HHHHHHHc-CCCCcc-----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888876 444330                                         11111122 566666666666666


Q ss_pred             hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048          432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-NKEVNMVMRKAKGVAAARSNGNALFK  510 (608)
Q Consensus       432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~lg~~~~~  510 (608)
                      .+++...|..       ......+...+..+...++++.|+..+.+++...+. ......            .++..+..
T Consensus       154 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  214 (291)
T COG0457         154 EKALELDPEL-------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL------------NLGLLYLK  214 (291)
T ss_pred             HHHHhcCCCc-------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH------------HhhHHHHH
Confidence            6665544310       012455555566677777888888888888887777 344443            67777778


Q ss_pred             cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                      .+++++|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus       215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            888888888888888887776667777777777666788888888888887776

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.98  E-value=2.2e-08  Score=107.11  Aligned_cols=137  Identities=12%  Similarity=0.067  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHH
Q 040048          452 ANLLVVRAQVNLACGR---FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ--------AKFSEAAAA  520 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~--------g~~~eA~~~  520 (608)
                      +.-++..|.-++..++   +..|+.+|+++++++|++..++..            ++.++...        .+...+...
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~------------la~~~~~~~~~~~~~~~~l~~a~~~  406 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAE------------KALADIVRHSQQPLDEKQLAALSTE  406 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHH------------HHHHHHHHHhcCCccHHHHHHHHHH
Confidence            5556667777766555   789999999999999999888763            33333222        235567777


Q ss_pred             HHHhhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          521 YGDGLGL--DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       521 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      ..+++.+  ++.++.++..+|..+...|++++|...|++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|.
T Consensus       407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            7776664  7777899999999999999999999999999999995 889999999999999999999999999999999


Q ss_pred             CHH
Q 040048          599 DEE  601 (608)
Q Consensus       599 ~~~  601 (608)
                      ++.
T Consensus       486 ~pt  488 (517)
T PRK10153        486 ENT  488 (517)
T ss_pred             Cch
Confidence            875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.97  E-value=1.1e-09  Score=87.65  Aligned_cols=81  Identities=32%  Similarity=0.485  Sum_probs=73.3

Q ss_pred             cCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          511 QAKFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD  588 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~  588 (608)
                      .|+|++|+.+|+++++..|.  +...++.+|.|+++.|+|++|+..+++ +..++.+...++.+|.++.++|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999985  467788899999999999999999999 888888889999999999999999999999


Q ss_pred             HHHH
Q 040048          589 YEIL  592 (608)
Q Consensus       589 ~~~a  592 (608)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2.8e-08  Score=98.53  Aligned_cols=145  Identities=23%  Similarity=0.252  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN----NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      +......|..|++.|+|..|...|++++..-..    +.+-. .....-....+.+++.++.++++|.+|+..++++|.+
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~-~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQ-KKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHH-HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            555667899999999999999999999875432    11111 1111223556789999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 040048          528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS-MQDYEILKKEAP  597 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~~~al~l~P  597 (608)
                      +|++..+++..|.++..+|+|+.|+..|++++++.|++..+...+..+..+..++.+. .+.|..++..-+
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999998887776655 788888887655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.95  E-value=1.6e-08  Score=98.50  Aligned_cols=103  Identities=14%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             HHHHHH-HHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHH
Q 040048          503 SNGNAL-FKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADC  575 (608)
Q Consensus       503 ~lg~~~-~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~  575 (608)
                      ..|..+ +..|+|++|+..|++.+...|++   +.+++++|.+|+..|++++|+..|+++++..|++   +++++.+|.+
T Consensus       147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~  226 (263)
T PRK10803        147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI  226 (263)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence            555655 56799999999999999999988   5799999999999999999999999999988874   7899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          576 FAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       576 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      +..+|++++|+..|+++++.+|+...+...
T Consensus       227 ~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A  256 (263)
T PRK10803        227 MQDKGDTAKAKAVYQQVIKKYPGTDGAKQA  256 (263)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            999999999999999999999999876544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.95  E-value=2.9e-09  Score=80.48  Aligned_cols=65  Identities=23%  Similarity=0.367  Sum_probs=59.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048          268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH  332 (608)
Q Consensus       268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  332 (608)
                      +.+|..++..|+|++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.94  E-value=6.6e-08  Score=86.16  Aligned_cols=127  Identities=20%  Similarity=0.135  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHRLA  339 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la  339 (608)
                      ..+......+..++...+...++..+..+|+.   ..+.+.+|.+++..|++++|+..|+.++...|+.   ..+.+.||
T Consensus        13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            44455555667899999999999999999988   4568889999999999999999999999877655   45788899


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048          340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL  419 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~  419 (608)
                      .++...|++++|+..++....                                           +...+.++..+|.++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~-------------------------------------------~~~~~~~~~~~Gdi~~  129 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPD-------------------------------------------EAFKALAAELLGDIYL  129 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccC-------------------------------------------cchHHHHHHHHHHHHH
Confidence            999999999999999866321                                           1112455666777888


Q ss_pred             HcCChHHHHHHhhcCC
Q 040048          420 KLHKHQEADETLKNGP  435 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al  435 (608)
                      ..|++++|+..|++++
T Consensus       130 ~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  130 AQGDYDEARAAYQKAL  145 (145)
T ss_pred             HCCCHHHHHHHHHHhC
Confidence            8888888887777654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.94  E-value=2.3e-06  Score=81.48  Aligned_cols=228  Identities=25%  Similarity=0.261  Sum_probs=182.5

Q ss_pred             cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc
Q 040048          311 LGRLLEAVFECREAIRIEPH--YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD  388 (608)
Q Consensus       311 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  388 (608)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+...+. .                          
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------   88 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALE-L--------------------------   88 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHh-h--------------------------
Confidence            56777788888888877776  367778888888888888888888877654 1                          


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH-HHHHcCC
Q 040048          389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ-VNLACGR  467 (608)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~-~~~~~g~  467 (608)
                                   .........+...+..+...+.+..++..+..++...+..          .......+. ++...|+
T Consensus        89 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  145 (291)
T COG0457          89 -------------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP----------DLAEALLALGALYELGD  145 (291)
T ss_pred             -------------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----------chHHHHHHHHHHHHcCC
Confidence                         0111124567777888888888999999999998877664          233344444 8999999


Q ss_pred             HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHc
Q 040048          468 FEDALAAIQKAAKQDSN-NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY-NSVLLCNRAACRSKL  545 (608)
Q Consensus       468 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~  545 (608)
                      ++.|...+.+++...|. ......          +...+..+...+++++|+..+.+++...+. ....+..++.++...
T Consensus       146 ~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         146 YEEALELYEKALELDPELNELAEA----------LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHHHHHHHHHhcCCCccchHHH----------HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence            99999999999886663 111111          125566688899999999999999999999 799999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       546 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      +++++|+..+..++...|.....+..++..+...+.++++...+.++++..|.
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999998888888898888888899999999999999986

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.93  E-value=3.2e-09  Score=101.76  Aligned_cols=106  Identities=31%  Similarity=0.440  Sum_probs=101.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      ...|+-|+++|+|++|+.||.+++..+|.++..+.++|.+|++++.|..|...++.|+.++..+..+|.+++.+...+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          582 WEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       582 ~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ..+|.+.++.++++.|++.+....+.
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHHH
Confidence            99999999999999999998876553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2.9e-08  Score=95.19  Aligned_cols=107  Identities=20%  Similarity=0.175  Sum_probs=99.6

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 040048          259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG---RLLEAVFECREAIRIEPHYHRAH  335 (608)
Q Consensus       259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~  335 (608)
                      .+|.|++-|..||.+|+..|++..|...|.+++++.|+++..+..+|.+++.+.   ...++...+++++.++|.+..+.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            358999999999999999999999999999999999999999999999988754   46789999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      +.||..++..|+|.+|+..++..+. ..|.+
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~  260 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLD-LLPAD  260 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHh-cCCCC
Confidence            9999999999999999999999999 55544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=2.4e-07  Score=83.76  Aligned_cols=204  Identities=16%  Similarity=0.058  Sum_probs=144.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..+..++..|..|-..|-+.-|...|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|.+.-++.+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHH-HHHHcCCCChHHHHHHHHHHHHH
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETR-AAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      ++--|++.-|.+.+.+..+ .+|.++.+...+...       ...-+..+|...+. ++...+.+   ..-..+...|+.
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ-~D~~DPfR~LWLYl~-------E~k~dP~~A~tnL~qR~~~~d~e---~WG~~iV~~yLg  211 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQ-DDPNDPFRSLWLYLN-------EQKLDPKQAKTNLKQRAEKSDKE---QWGWNIVEFYLG  211 (297)
T ss_pred             eeecCchHhhHHHHHHHHh-cCCCChHHHHHHHHH-------HhhCCHHHHHHHHHHHHHhccHh---hhhHHHHHHHHh
Confidence            9999999999999999888 888886543322111       12234555544433 33332211   111112222222


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD  482 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (608)
                      .=..+.+.+.....-..+.. ....     -.+.++.+|..+...|+.++|...|+-++..+
T Consensus       212 kiS~e~l~~~~~a~a~~n~~-~Ae~-----LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         212 KISEETLMERLKADATDNTS-LAEH-----LTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             hccHHHHHHHHHhhccchHH-HHHH-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            22222222222221111100 0001     16788999999999999999999999888654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.89  E-value=2.7e-08  Score=87.30  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..-+..+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCC
Q 040048          342 YLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~  360 (608)
                      |+.+|+.+.|+.+|..++.
T Consensus       115 ~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999986

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.89  E-value=5.1e-07  Score=100.90  Aligned_cols=237  Identities=14%  Similarity=0.085  Sum_probs=197.4

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 040048          279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR-IEPHY----HRAHHRLANLYLRLGEVEKAIY  353 (608)
Q Consensus       279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~p~~----~~~~~~la~~~~~~g~~~~A~~  353 (608)
                      +-.+..+.|++.+.-+|+....|..+-...++.++.++|.+.+++||. +++..    ...|..+-++...-|.-+.-.+
T Consensus      1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            344567789999999999999999999999999999999999999997 45543    3456666666666687788888


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhc
Q 040048          354 HFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN  433 (608)
Q Consensus       354 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~  433 (608)
                      .|++|.+..+|        ...|..++.+|...+.+++|.++++.+++... ....+|..++..++...+-+.|...+.+
T Consensus      1519 VFeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1519 VFERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred             HHHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999873343        46788999999999999999999999999877 5578999999999999999999999999


Q ss_pred             CCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 040048          434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAK  513 (608)
Q Consensus       434 al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~  513 (608)
                      +++.-|..        .+.......|.+.++.|+.+.+..+|+..+..+|.-.+.|.            -....-.+.|+
T Consensus      1590 AL~~lPk~--------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~------------VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1590 ALKSLPKQ--------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWS------------VYIDMEIKHGD 1649 (1710)
T ss_pred             HHhhcchh--------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHH------------HHHHHHHccCC
Confidence            99988873        34788888999999999999999999999999999999997            45677788899


Q ss_pred             HHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHH
Q 040048          514 FSEAAAAYGDGLGL--DPYNSVLLCNRAACRSK  544 (608)
Q Consensus       514 ~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~  544 (608)
                      .+.+..+|++++.+  .+.....++..=.-|.+
T Consensus      1650 ~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred             HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence            99999999999986  34445555444333433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=1.1e-06  Score=82.23  Aligned_cols=256  Identities=16%  Similarity=0.151  Sum_probs=181.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          273 EDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI  352 (608)
Q Consensus       273 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  352 (608)
                      -++-.|+|..++..-.+.-... ........+...|..+|.+...+......-   .....+...++.....-++.++-+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~   92 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL   92 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence            4556788888887776654433 667778888999999999877665544332   122345555555555555555544


Q ss_pred             HHHHHhCC-CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHh
Q 040048          353 YHFKHAGP-EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL  431 (608)
Q Consensus       353 ~~~~~al~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l  431 (608)
                      ....+.+. .....+      ......-+.++..-+++++|++.......      -++..+-..++.++.+++-|...+
T Consensus        93 ~~l~E~~a~~~~~sn------~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r~d~A~~~l  160 (299)
T KOG3081|consen   93 ASLYELVADSTDGSN------LIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAALNVQILLKMHRFDLAEKEL  160 (299)
T ss_pred             HHHHHHHHhhccchh------HHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433321 111111      34455567778888999999888776332      356666778899999999999999


Q ss_pred             hcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 040048          432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA  507 (608)
Q Consensus       432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~  507 (608)
                      +++.+++.+            ..+..+|..+..    .+++.+|.-+|++.-+..+..+....            ..+.+
T Consensus       161 k~mq~ided------------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~lln------------G~Av~  216 (299)
T KOG3081|consen  161 KKMQQIDED------------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLN------------GQAVC  216 (299)
T ss_pred             HHHHccchH------------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHc------------cHHHH
Confidence            999988754            445555555543    35689999999998886666666554            78899


Q ss_pred             HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHH
Q 040048          508 LFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED-CNAALNVRPGYSKA  568 (608)
Q Consensus       508 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a  568 (608)
                      ++.+|+|++|...++.++..++.+++++.++-.+-...|.-.++..- +.+....+|.++..
T Consensus       217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            99999999999999999999999999999999999999988777654 45555567877643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=1.4e-06  Score=92.55  Aligned_cols=306  Identities=17%  Similarity=0.093  Sum_probs=180.0

Q ss_pred             hHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040048          252 TSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY  331 (608)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  331 (608)
                      ..+.++..++.  +.-...|......|-.++|+.+|++.-..|        .+-..|...|.+++|.+..+.-=.+.  .
T Consensus       790 RAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--L  857 (1416)
T KOG3617|consen  790 RALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--L  857 (1416)
T ss_pred             HHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--h
Confidence            34444443333  333345667778899999999999875533        45677888999999988776543332  2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCCC---------CCchhHH----HHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048          332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPE---------ADQVDIA----KAKSLQAHLNKCTDAKRTRDWNTLIQETRA  398 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  398 (608)
                      ...|++.|.-+...++.+.|+++|+++-..         -+|....    .......|..-+.-....|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            457899999999999999999999987320         0010000    000001111222333344455555554444


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          399 AIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA  478 (608)
Q Consensus       399 al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  478 (608)
                      +         .-|+.+..+.+-+|+.++|..+-++.               ++..+.+.+|+.|...|++.+|+..|.++
T Consensus       938 A---------~D~fs~VrI~C~qGk~~kAa~iA~es---------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  938 A---------KDYFSMVRIKCIQGKTDKAARIAEES---------------GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             h---------hhhhhheeeEeeccCchHHHHHHHhc---------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3         22334444444555555555544443               34778889999999999999999998876


Q ss_pred             HH------hCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHh------------------h-----c
Q 040048          479 AK------QDSNNK--EVNMVMRKAKGVAAARSNGNALFKQA-KFSEAAAAYGDG------------------L-----G  526 (608)
Q Consensus       479 l~------~~p~~~--~~~~~l~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~~a------------------l-----~  526 (608)
                      -.      +...+.  +-...+.......-....+..|...| ....|..+|.+|                  +     .
T Consensus       994 qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen  994 QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence            44      222221  11111111000001112233333333 444444444332                  1     1


Q ss_pred             CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhcC----------------CC---------CHHHHHHHHH
Q 040048          527 LDP-YNSVLLCNRAACRSKLGQFEKAIEDCN------AALNVR----------------PG---------YSKARLRRAD  574 (608)
Q Consensus       527 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~----------------p~---------~~~a~~~la~  574 (608)
                      ++| .++.++..-+..+....+|++|...+-      .|+.+.                |.         -...+..+|.
T Consensus      1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred             cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence            344 457888888999999999999987654      444431                21         1356788999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 040048          575 CFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       575 ~~~~~g~~~~A~~~~~~al  593 (608)
                      ++.++|.|..|-+-|.+|=
T Consensus      1154 ~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred             HHHhccchHHHHHHHhhhh
Confidence            9999999999998888763

>PRK11906 transcriptional regulator; Provisional

Probab=98.83  E-value=1.3e-07  Score=96.32  Aligned_cols=136  Identities=10%  Similarity=-0.050  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---------cCCHHHHH
Q 040048          454 LLVVRAQVNLACGR---FEDALAAIQKAA---KQDSNNKEVNMVMRKAKGVAAARSNGNALFK---------QAKFSEAA  518 (608)
Q Consensus       454 ~~~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---------~g~~~eA~  518 (608)
                      -++..|...+..+.   .+.|+.+|.+++   .++|+...++.            .++.+++.         .....+|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~------------~lA~~h~~~~~~g~~~~~~~~~~a~  324 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC------------LLAECHMSLALHGKSELELAAQKAL  324 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHH------------HHHHHHHHHHHhcCCCchHHHHHHH
Confidence            44667777666554   568899999999   89999888876            33444332         34567899


Q ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       519 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      +..+++++++|.++.++..+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|.+.++++++++|.
T Consensus       325 ~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        325 ELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CHH
Q 040048          599 DEE  601 (608)
Q Consensus       599 ~~~  601 (608)
                      -..
T Consensus       405 ~~~  407 (458)
T PRK11906        405 RRK  407 (458)
T ss_pred             hhH
Confidence            543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.82  E-value=5.7e-07  Score=81.35  Aligned_cols=195  Identities=9%  Similarity=-0.001  Sum_probs=138.7

Q ss_pred             HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048          373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNA  452 (608)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~  452 (608)
                      ...++.+|..|-..|-|.-|.-.+.+++.+.|+. +.+++.+|..+...|+++.|.+.|...++++|..          -
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m-~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y----------~  133 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------N  133 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc-HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc----------h
Confidence            5667777888888999999999999999999987 6899999999999999999999999999999974          6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HhhcCCCCC
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG-DGLGLDPYN  531 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~-~al~~~p~~  531 (608)
                      .+..+.|..++.-|++.-|.+.+.+-.+.+|+++--..++             .+-...-+..+|..-+. ++... .+.
T Consensus       134 Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-------------Yl~E~k~dP~~A~tnL~qR~~~~-d~e  199 (297)
T COG4785         134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-------------YLNEQKLDPKQAKTNLKQRAEKS-DKE  199 (297)
T ss_pred             HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH-------------HHHHhhCCHHHHHHHHHHHHHhc-cHh
Confidence            7888899999999999999999999999999988643322             11223345566654443 33333 222


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-------SKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      -+.|+..+..   +|+..+ ...++++.....++       .++++.+|..+...|+.++|...|+-++.-+
T Consensus       200 ~WG~~iV~~y---LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         200 QWGWNIVEFY---LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             hhhHHHHHHH---HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            3333332222   232221 22333333332222       4677788888888888888888887776543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=1.4e-07  Score=84.09  Aligned_cols=102  Identities=32%  Similarity=0.513  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL  338 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  338 (608)
                      ++.+..-|+-++..|+|++|..-|..||.+.|..+     ..|.+.|.+++.++.++.|+..+.++|+++|.+..++.+.
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            55677889999999999999999999999999863     4688999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      |.+|..+.+|++|+..|+++++ .+|..
T Consensus       175 Aeayek~ek~eealeDyKki~E-~dPs~  201 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILE-SDPSR  201 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHH-hCcch
Confidence            9999999999999999999999 88876

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.81  E-value=9.1e-08  Score=93.25  Aligned_cols=104  Identities=11%  Similarity=0.031  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 040048          262 MDPETLKIMGNED-YKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRA  334 (608)
Q Consensus       262 ~~~~~~~~lg~~~-~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~  334 (608)
                      .+...++..|..+ +..|+|++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|++++...|++   +++
T Consensus       140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            3567788888876 56799999999999999999998   5799999999999999999999999999988875   789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      ++.+|.++..+|++++|+..|++++. ..|+.
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~-~yP~s  250 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIK-KYPGT  250 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCC
Confidence            99999999999999999999999998 77766

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.80  E-value=1.6e-07  Score=96.28  Aligned_cols=133  Identities=17%  Similarity=0.209  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 040048          455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVL  534 (608)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~  534 (608)
                      .-.+-.++...++++.|+..+++..+.+|+   +..            .++.++...++..+|++.+.+++...|.+..+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~------------~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L  236 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAV------------LLARVYLLMNEEVEAIRLLNEALKENPQDSEL  236 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHH------------HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence            334555666788999999999999988876   332            57889999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      +...+..+...++++.|+...++++.+.|++...|+.|+.+|..+|+++.|+..+..+=-..+.+...
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~  304 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK  304 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence            99999999999999999999999999999999999999999999999999998777554443344333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.79  E-value=1.5e-07  Score=100.76  Aligned_cols=136  Identities=15%  Similarity=0.047  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhh--CCC
Q 040048          264 PETLKIMGNEDYKAGN---FAEALALYDAAISIDPNKASYRSNKTAALIALG--------RLLEAVFECREAIRI--EPH  330 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~eA~~~~~~al~~--~p~  330 (608)
                      +-.++..|..++..++   +..|+.+|++|++++|+++.+|..++.++....        +...+....++++.+  +|.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            3446777877776655   778999999999999999888888888775542        234556666665553  666


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 040048          331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA  407 (608)
Q Consensus       331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  407 (608)
                      .+.+|..+|..+...|++++|...+++++. ++|+       ...|..+|..+...|+.++|+..|++++.++|...
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L~ps-------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAID-LEMS-------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            777888888888888888888888888888 7763       34566666666666666666666666666666554

>PRK11906 transcriptional regulator; Provisional

Probab=98.77  E-value=2.8e-07  Score=93.88  Aligned_cols=150  Identities=10%  Similarity=0.006  Sum_probs=126.5

Q ss_pred             hHHHHHHhhcCC---CCCCcccccccCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048          424 HQEADETLKNGP---NFDVDETTRFFGPIGNANLLVVRAQVNLAC---------GRFEDALAAIQKAAKQDSNNKEVNMV  491 (608)
Q Consensus       424 ~~eA~~~l~~al---~~~p~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~  491 (608)
                      .+.|+.+|.+++   .++|+.          +.+|..++.+++..         ....+|....+++++++|.++.+.. 
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~-  342 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLK----------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILA-  342 (458)
T ss_pred             HHHHHHHHHHHhhcccCCccc----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHH-
Confidence            467888899999   888875          78888888887654         2456889999999999999999886 


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048          492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR  571 (608)
Q Consensus       492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  571 (608)
                                 .+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++++++++|.-..+-..
T Consensus       343 -----------~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~  411 (458)
T PRK11906        343 -----------IMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI  411 (458)
T ss_pred             -----------HHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence                       889999999999999999999999999999999999999999999999999999999999987665544


Q ss_pred             HHHH-HHHcCCHHHHHHHHHHHHHh
Q 040048          572 RADC-FAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       572 la~~-~~~~g~~~~A~~~~~~al~l  595 (608)
                      .-.+ .+-....++|+..|-+-.+.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~  436 (458)
T PRK11906        412 KECVDMYVPNPLKNNIKLYYKETES  436 (458)
T ss_pred             HHHHHHHcCCchhhhHHHHhhcccc
Confidence            4444 44456778888888765443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.77  E-value=1.2e-05  Score=86.84  Aligned_cols=293  Identities=14%  Similarity=0.116  Sum_probs=197.3

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY  353 (608)
Q Consensus       274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  353 (608)
                      ....++|.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            34678999999999999999999999999999999999999999988888877888888899999999999999999999


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH-------
Q 040048          354 HFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE-------  426 (608)
Q Consensus       354 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e-------  426 (608)
                      +|++++. .+|..       ...+.+...|.+.++|.+-.+.--+..+..|...-..|..+..++......++       
T Consensus        99 ~Ye~~~~-~~P~e-------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen   99 LYERANQ-KYPSE-------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             HHHHHHh-hCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence            9999998 77773       34455556667777776666655566667777766677776666666555444       


Q ss_pred             --HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          427 --ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK-AAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       427 --A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                        |....++.++....        .+...=....-.++..+|++++|.+.+.. ..+..+.......           ..
T Consensus       171 ~LA~~m~~~~l~~~gk--------~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~-----------~~  231 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGK--------IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE-----------NK  231 (932)
T ss_pred             HHHHHHHHHHhccCCc--------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH-----------HH
Confidence              33444555544310        01122223344567788999999999843 3333333322221           14


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH-------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHH
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN-------------RAACRSKLGQFEKAIEDCNAALNVRPGYS-KAR  569 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~  569 (608)
                      .+..+...++|.+-.+...+++...+++-..+..             .+..+...+..+..++...+.+.-....+ -++
T Consensus       232 ~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~  311 (932)
T KOG2053|consen  232 KLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLAR  311 (932)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHH
Confidence            5677888899999999999999988887221111             11112222334444444444444322222 334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          570 LRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      +.+-.-+...|+.+++.-.|-+-+
T Consensus       312 lel~kr~~~~gd~ee~~~~y~~kf  335 (932)
T KOG2053|consen  312 LELDKRYKLIGDSEEMLSYYFKKF  335 (932)
T ss_pred             HHHHHHhcccCChHHHHHHHHHHh
Confidence            444334456788888776665544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.77  E-value=1.5e-07  Score=89.23  Aligned_cols=103  Identities=14%  Similarity=0.148  Sum_probs=95.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADC  575 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~  575 (608)
                      +..|.-+++.|+|.+|...|..-++..|+.   +.++++||.+++.+|+|++|...|..+++-.|++   +++++.+|.+
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            378888999999999999999999999976   6899999999999999999999999999988775   7899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          576 FAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       576 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      ...+|+.++|...|+++++..|+.+.+..
T Consensus       225 ~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         225 LGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            99999999999999999999999887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=4.8e-06  Score=88.59  Aligned_cols=143  Identities=18%  Similarity=0.144  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDS---------NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY  521 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~  521 (608)
                      +..+|...|..+...|+.+.|+.+|..+-....         .-..+-.+.+......+-+.+|..|...|++.+|+.+|
T Consensus       911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff  990 (1416)
T KOG3617|consen  911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF  990 (1416)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            467888899999999999999999988765321         11112212222233445578999999999999999999


Q ss_pred             HHhhc------CCCCC--------------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hh--------------
Q 040048          522 GDGLG------LDPYN--------------SVLLCNRAACRSKLG-QFEKAIEDCNAA------LN--------------  560 (608)
Q Consensus       522 ~~al~------~~p~~--------------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~--------------  560 (608)
                      .+|-.      +...+              +.-....|..|...| +++.|...|.+|      ++              
T Consensus       991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen  991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence            87643      22211              011112334444555 566666655543      21              


Q ss_pred             ---cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          561 ---VRP-GYSKARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       561 ---~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                         ++| .++..+.+-+..+....+|++|...+-.+.
T Consensus      1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence               234 367888888999999999999987655443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.73  E-value=3.1e-07  Score=77.78  Aligned_cols=97  Identities=24%  Similarity=0.190  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPH---YHRAHHR  337 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~  337 (608)
                      |.+++.+|.++-..|+.++|+.+|++++......   ..++..+|.++..+|++++|+..+++++...|+   +..+...
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4578999999999999999999999999976554   568999999999999999999999999999888   7788888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhCC
Q 040048          338 LANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       338 la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      ++.++...|++++|+..+-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999987653

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.73  E-value=2.2e-05  Score=77.31  Aligned_cols=268  Identities=15%  Similarity=0.066  Sum_probs=149.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTA--ALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      ..|-++..-+...+..|+|+.|..-|+..+. +|+- ..+-..|.  --...|..+.|+.+.+++-...|..+.++...-
T Consensus       118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL  195 (531)
T COG3898         118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL  195 (531)
T ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence            3455666677788888888888888887664 3332 12222222  223578888888888888888888888888777


Q ss_pred             HHHHHcCCHHHHHHHHHHhCC--CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 040048          340 NLYLRLGEVEKAIYHFKHAGP--EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA  417 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~  417 (608)
                      ...+..|+++.|++..+....  .+.++... ......+...+                                   ..
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~ae-R~rAvLLtAkA-----------------------------------~s  239 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAE-RSRAVLLTAKA-----------------------------------MS  239 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHhhchhhHH-HHHHHHHHHHH-----------------------------------HH
Confidence            788888888888888765433  01111100 00000000011                                   11


Q ss_pred             HHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048          418 LLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG  497 (608)
Q Consensus       418 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  497 (608)
                      . -.-+...|...-.++.++.|+.          ...-..-+..++..|+..++-.+++.+.+..|.. +++        
T Consensus       240 ~-ldadp~~Ar~~A~~a~KL~pdl----------vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia--------  299 (531)
T COG3898         240 L-LDADPASARDDALEANKLAPDL----------VPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIA--------  299 (531)
T ss_pred             H-hcCChHHHHHHHHHHhhcCCcc----------chHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHH--------
Confidence            1 1123444555555555555553          3444455566666666666666666666665542 221        


Q ss_pred             HHHHHHHHHHHHHcCCHHHH-HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEA-AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                            +..++.+.|+.... ++-..+...+.|++.+..+.++..-+..|++..|...-+.+....|.. .++..++++-
T Consensus       300 ------~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIe  372 (531)
T COG3898         300 ------LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIE  372 (531)
T ss_pred             ------HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHH
Confidence                  11233333332221 122233334556666666666666666666666666666666666553 3455556655


Q ss_pred             HHc-CCHHHHHHHHHHHHH
Q 040048          577 AKI-EKWEASMQDYEILKK  594 (608)
Q Consensus       577 ~~~-g~~~~A~~~~~~al~  594 (608)
                      ... |+-.+...++-++++
T Consensus       373 eAetGDqg~vR~wlAqav~  391 (531)
T COG3898         373 EAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             hhccCchHHHHHHHHHHhc
Confidence            444 666666666666654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.72  E-value=3.9e-08  Score=74.97  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=61.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ++..|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999999999988888777754

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.69  E-value=9.8e-08  Score=73.91  Aligned_cols=66  Identities=24%  Similarity=0.432  Sum_probs=44.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       539 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      ..+|...+++++|++++++++.++|+++..|+.+|.++..+|++++|+..|+++++..|+++++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            445666666666666666666666666666666666666666666666666666666666666543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=1.4e-07  Score=72.98  Aligned_cols=71  Identities=23%  Similarity=0.359  Sum_probs=64.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      +..+++..++|++|+.++++++.++|+++..|..+|.++..+|++.+|+..|+++++..|++..+....+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35688999999999999999999999999999999999999999999999999999999998877665543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.64  E-value=7.6e-06  Score=77.10  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=141.9

Q ss_pred             CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN  484 (608)
Q Consensus       405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  484 (608)
                      +..+..++..|...+..|++++|+..|+.+....|-...       ...+.+.++..+++.+++++|+..+++-+.+.|+
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~  103 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT  103 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence            344667888888889999999999999999888876432       2788999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHhhcCCCCCH-----------------HHHHHHH
Q 040048          485 NKEVNMVMRKAKGVAAARSNGNALFKQ--------AKFSEAAAAYGDGLGLDPYNS-----------------VLLCNRA  539 (608)
Q Consensus       485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~-----------------~~~~~la  539 (608)
                      ++++-..+         +..|.+++..        .-..+|+..|+..+...|+..                 ..-..+|
T Consensus       104 ~~n~dY~~---------YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Ia  174 (254)
T COG4105         104 HPNADYAY---------YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIA  174 (254)
T ss_pred             CCChhHHH---------HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            98876532         4566665543        224678888999999988752                 1224678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Q 040048          540 ACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASMQDYEILKKEA-PDD  599 (608)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~  599 (608)
                      ..|.+.|.+..|+..++.+++..|+.   .+++..+..+|..+|-.++|... .+++..+ |++
T Consensus       175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s  237 (254)
T COG4105         175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDS  237 (254)
T ss_pred             HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence            89999999999999999999987764   57889999999999999999765 5555555 444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.64  E-value=1.2e-06  Score=75.30  Aligned_cols=105  Identities=17%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRAD  574 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~  574 (608)
                      ++..|...+..|+|++|++.|+.+....|..   ..+.+.+|.+|++.|++++|+..+++-++++|.+   ..+++..|.
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            3588999999999999999999999988754   5788999999999999999999999999999987   468899999


Q ss_pred             HHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          575 CFAKIEK---------------WEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       575 ~~~~~g~---------------~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      +++.+..               ..+|...|+++++..|++.-+..+
T Consensus        93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999887               899999999999999999876543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.63  E-value=7.5e-08  Score=73.39  Aligned_cols=64  Identities=34%  Similarity=0.500  Sum_probs=38.9

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      +..|++++|+..|++++..+|++..+++.+|.+|.+.|++++|...+++++..+|+++.++..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            3456666666666666666666666666666666666666666666666666666665554443

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.62  E-value=7.6e-07  Score=91.28  Aligned_cols=120  Identities=23%  Similarity=0.245  Sum_probs=98.4

Q ss_pred             HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048          414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR  493 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  493 (608)
                      +..++...++++.|+..+++..+.+|+             +...++.++...++..+|+..+.+++...|.+...+.   
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~---  238 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE-------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN---  238 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc-------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH---
Confidence            345555667888888888888877654             4455788888888888999999999988888866654   


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                               ..+..+...++++.|+.+.++++...|.+...|+.|+.+|..+|++++|+..++.+
T Consensus       239 ---------~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  239 ---------LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             ---------HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence                     67888889999999999999999999999999999999999999999998777644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.62  E-value=3.7e-06  Score=74.42  Aligned_cols=151  Identities=16%  Similarity=0.152  Sum_probs=121.7

Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK-QDSNNKEVNMVMRKAKGV  498 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~  498 (608)
                      ..=+.+....-..+.+...|.           ..-.+.+|..+...|++.+|..+|++++. +..++.....        
T Consensus        68 q~ldP~R~~Rea~~~~~~ApT-----------vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lL--------  128 (251)
T COG4700          68 QKLDPERHLREATEELAIAPT-----------VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLL--------  128 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchh-----------HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHH--------
Confidence            334445555555555555554           66778899999999999999999999986 4455555443        


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                          .+++..+..+++.+|...+++..+.+|.  .+.....+|..+...|.+.+|...|+.++...|+ +.+....+..+
T Consensus       129 ----glA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~L  203 (251)
T COG4700         129 ----GLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEML  203 (251)
T ss_pred             ----HHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence                8899999999999999999999999874  4778888999999999999999999999999887 56778889999


Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 040048          577 AKIEKWEASMQDYEILKK  594 (608)
Q Consensus       577 ~~~g~~~~A~~~~~~al~  594 (608)
                      .++|+.++|..-|..+.+
T Consensus       204 a~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         204 AKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHhcchhHHHHHHHHHHH
Confidence            999988888766655443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.60  E-value=1e-06  Score=74.60  Aligned_cols=95  Identities=17%  Similarity=0.073  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG---YSKARLRRA  573 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la  573 (608)
                      +++.+|.++-..|+.++|+.+|++++......   ..++..+|..+..+|++++|+..+++++...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            34689999999999999999999999975443   568999999999999999999999999999888   778888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 040048          574 DCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~al~  594 (608)
                      .++...|+.++|+..+-.++.
T Consensus        83 l~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999987765

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=3.7e-05  Score=71.89  Aligned_cols=232  Identities=16%  Similarity=0.166  Sum_probs=166.2

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          297 KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------------------HRAHHRLANLYLRLGEVEKAIYHFKH  357 (608)
Q Consensus       297 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~  357 (608)
                      ....|...-.++..+..+++|...+...-+++..+                   .......|.+...+|...+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34567777888888999999888877665554221                   11233456667777887777766554


Q ss_pred             hCCCCCchhHHHHHHHHHHHHHhHHHHHhhc-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048          358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRD-WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN  436 (608)
Q Consensus       358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  436 (608)
                      ...               +........+.+. .+..+..+++-+       ..+.+.++.++...++|.-....+.+.++
T Consensus       148 L~~---------------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~  205 (366)
T KOG2796|consen  148 LKT---------------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIK  205 (366)
T ss_pred             HHH---------------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence            422               1111111111122 233344444433       34677788899999999999999999999


Q ss_pred             CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 040048          437 FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE  516 (608)
Q Consensus       437 ~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e  516 (608)
                      .+|..         .+.+...+|.+.++.|+.+.|..+|+++-+....-.....      ......+.+.++.-.+++.+
T Consensus       206 ~~~e~---------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~------~~~V~~n~a~i~lg~nn~a~  270 (366)
T KOG2796|consen  206 YYPEQ---------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG------KIMVLMNSAFLHLGQNNFAE  270 (366)
T ss_pred             hCCcc---------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch------hHHHHhhhhhheecccchHH
Confidence            88652         4788889999999999999999999966543221111100      11223478888999999999


Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          517 AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       517 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      |...|.+++..+|.++.+.++.|.|+..+|+..+|++.++.++.+.|..
T Consensus       271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  271 AHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999999999999999999999975

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.56  E-value=4.3e-05  Score=72.12  Aligned_cols=80  Identities=20%  Similarity=0.142  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR---AH  335 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~  335 (608)
                      .-+..|+..|...++.|+|++|+..|+.+....|..+   .+...++.++++.+++++|+..+++-+.+.|.++.   ++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            3578899999999999999999999999999988764   57899999999999999999999999999988744   56


Q ss_pred             HHHHHH
Q 040048          336 HRLANL  341 (608)
Q Consensus       336 ~~la~~  341 (608)
                      +..|.+
T Consensus       112 YlkgLs  117 (254)
T COG4105         112 YLKGLS  117 (254)
T ss_pred             HHHHHH
Confidence            666666

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.56  E-value=4.4e-07  Score=80.42  Aligned_cols=94  Identities=20%  Similarity=0.310  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 040048          514 FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ----------FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK--  581 (608)
Q Consensus       514 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--  581 (608)
                      |+.|.+.++.....+|.+++.+++.|.++..+.+          +++|+.-|++||.++|+..++++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999999998887643          5678888999999999999999999999987754  


Q ss_pred             ---------HHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          582 ---------WEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       582 ---------~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                               |++|.++|++|.+.+|+|...+..|.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                     78999999999999999998888764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.53  E-value=2.4e-06  Score=70.91  Aligned_cols=97  Identities=23%  Similarity=0.252  Sum_probs=88.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY----SKARLRRADCFAK  578 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~  578 (608)
                      ..|.++...|+.+.|++.|.+++.+.|..+.+|++.+..+.-.|+.++|++.+++++++..+.    -.++...|.+|..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999999999999999986554    3578899999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 040048          579 IEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       579 ~g~~~~A~~~~~~al~l~P~~  599 (608)
                      +|+-+.|...|+.+-++....
T Consensus       128 ~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             hCchHHHHHhHHHHHHhCCHH
Confidence            999999999999998876543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.52  E-value=4.4e-07  Score=92.35  Aligned_cols=68  Identities=18%  Similarity=0.177  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA---RLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +|+++..|+++|.+|..+|+|++|+.+|+++++++|++..+   |+++|.+|..+|++++|+.+|++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34445555555555555555555555555555555554432   555555555555555555555555554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=2e-05  Score=72.40  Aligned_cols=144  Identities=15%  Similarity=0.086  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHhhcCCCCC
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-AKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~  531 (608)
                      ..|...+.+|- ..+..+|+.++++++++..+-.....      .+.-+..+|.+|... .++++|+.+|+++-+.....
T Consensus        75 t~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e  147 (288)
T KOG1586|consen   75 TTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTM------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE  147 (288)
T ss_pred             HHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHH------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence            33344444443 44888888888888877655443322      233345788888765 89999999999998764322


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          532 ------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS-------KARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       532 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                            -..+...|..-..+++|.+|+..|++.....-++.       +-++.-|.|++-..+.-.+...+++..+++|.
T Consensus       148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~  227 (288)
T KOG1586|consen  148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA  227 (288)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence                  24556677777889999999999999887654443       33456788888889999999999999999998


Q ss_pred             CHHHH
Q 040048          599 DEEVD  603 (608)
Q Consensus       599 ~~~~~  603 (608)
                      ..+.+
T Consensus       228 F~dsR  232 (288)
T KOG1586|consen  228 FTDSR  232 (288)
T ss_pred             ccccH
Confidence            76544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.50  E-value=1.4e-06  Score=82.83  Aligned_cols=103  Identities=21%  Similarity=0.190  Sum_probs=94.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHH  336 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~  336 (608)
                      +++-+|..|..++..|+|.+|...|..-++..|+.   +.++|.||.+++.+|++++|...|..+++-.|+.   +++++
T Consensus       140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            34458999999999999999999999999999987   5789999999999999999999999999987765   78999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      .+|.+...+|+.++|...|+++++ -.|..
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k-~YP~t  248 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIK-RYPGT  248 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHH-HCCCC
Confidence            999999999999999999999988 56655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.47  E-value=7.6e-07  Score=90.62  Aligned_cols=70  Identities=21%  Similarity=0.196  Sum_probs=66.4

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040048          259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY---RSNKTAALIALGRLLEAVFECREAIRIE  328 (608)
Q Consensus       259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~~  328 (608)
                      ..|.++++|+++|..|+..|+|++|+.+|+++|+++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            368899999999999999999999999999999999999854   9999999999999999999999999973

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=4.3e-05  Score=71.43  Aligned_cols=234  Identities=12%  Similarity=0.086  Sum_probs=159.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHH-------------HHHHHHHHHHhHHHHHhhcHHHHHHHHH
Q 040048          331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAK-------------AKSLQAHLNKCTDAKRTRDWNTLIQETR  397 (608)
Q Consensus       331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~  397 (608)
                      +...|...-.++..+..+++|...+...-. ++..+...             .-.....+..+.+....|...+.+.-+.
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~-lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~  146 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGN-LDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH  146 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhcc-CCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            456677777788888888888877765544 44433111             0011112222333334444444433332


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          398 AAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK  477 (608)
Q Consensus       398 ~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (608)
                      .....        ...+...+......+..++.+++-+                ..+.+.++.++.-.|+|.-.+..+.+
T Consensus       147 ~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl----------------~~Vmy~~~~~llG~kEy~iS~d~~~~  202 (366)
T KOG2796|consen  147 KLKTV--------VSKILANLEQGLAEESSIRLWRKRL----------------GRVMYSMANCLLGMKEYVLSVDAYHS  202 (366)
T ss_pred             HHHHH--------HHHHHHHHHhccchhhHHHHHHHHH----------------HHHHHHHHHHHhcchhhhhhHHHHHH
Confidence            22110        0111111111122233344443322                56677888999999999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----C--CCCHHHHHHHHHHHHHcCCHHHH
Q 040048          478 AAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----D--PYNSVLLCNRAACRSKLGQFEKA  551 (608)
Q Consensus       478 al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~--p~~~~~~~~la~~~~~~g~~~~A  551 (608)
                      .++.+|.......           ..+|.+.++.|+.+.|..+|++.-+.    +  .....+..+.+.+|.-.+++.+|
T Consensus       203 vi~~~~e~~p~L~-----------s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a  271 (366)
T KOG2796|consen  203 VIKYYPEQEPQLL-----------SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA  271 (366)
T ss_pred             HHHhCCcccHHHH-----------HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence            9998855444432           38999999999999999999955432    2  23456778889999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      ...|.+++..+|.++.+..+.|.|+.-+|+..+|++.++.+++..|...
T Consensus       272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  272 HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999999999999999999999999999753

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.44  E-value=4.3e-06  Score=72.02  Aligned_cols=105  Identities=20%  Similarity=0.172  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH---RA  334 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~  334 (608)
                      ...+..++..|...+..|+|++|++.|+.+....|..   ..+.+.+|.+|+..+++++|+..+++.++++|.++   .+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3567889999999999999999999999999998875   46789999999999999999999999999999874   58


Q ss_pred             HHHHHHHHHHcCC---------------HHHHHHHHHHhCCCCCchh
Q 040048          335 HHRLANLYLRLGE---------------VEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       335 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~p~~  366 (608)
                      ++..|.+++.+..               ..+|...|++++. .-|+.
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~-~yP~S  132 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR-RYPNS  132 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH-HCcCC
Confidence            9999999998876               6777777777776 55554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.41  E-value=3.1e-07  Score=72.17  Aligned_cols=64  Identities=16%  Similarity=0.335  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVR---P-G---YSKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p-~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +.++.++|.+|..+|++++|+.+|++++++.   + +   ...++.++|.++..+|++++|+++|++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566777777777777777777777777541   1 1   2456677777777777777777777777765

...

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.39  E-value=0.00039  Score=75.62  Aligned_cols=287  Identities=13%  Similarity=-0.024  Sum_probs=177.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |..+-+....|..+++.|++++|..+++..-...+++...+-.+-.||..++++++|..+|++++..+|. .+..+.+-.
T Consensus        40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFm  118 (932)
T KOG2053|consen   40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFM  118 (932)
T ss_pred             CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence            5667778888999999999999999998887788888888999999999999999999999999999999 788888888


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh----cHHHHHHHHHHHHHcC-CCChHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR----DWNTLIQETRAAIAGG-ADSAPQIYALQA  415 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~-~~~~~~~~~~la  415 (608)
                      +|.+-+.|.+-.+.--+..+ ..|........+...+..+......+    -..-|....++.++.. +-....-....-
T Consensus       119 ayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl  197 (932)
T KOG2053|consen  119 AYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL  197 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence            88888887654333333322 33443222222222111111111111    1123445556666555 333333344455


Q ss_pred             HHHHHcCChHHHHHHhhc-CCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH-HH
Q 040048          416 EALLKLHKHQEADETLKN-GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV-MR  493 (608)
Q Consensus       416 ~~~~~~g~~~eA~~~l~~-al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~  493 (608)
                      .++...|.+++|.+.+.. ..+..+.         .+...-......+...+++.+-.+...+++...+++...+.- +.
T Consensus       198 ~iL~~~~k~~eal~~l~~~la~~l~~---------~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~  268 (932)
T KOG2053|consen  198 LILELQGKYQEALEFLAITLAEKLTS---------ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVF  268 (932)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhccc---------cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence            677889999999999833 3333332         124455567778889999999999999999999997222110 00


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV-LLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      ++-...--...+..+...+..+..++...+.+......+. ++..+-.-+...|+.++++-.|-+-
T Consensus       269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k  334 (932)
T KOG2053|consen  269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK  334 (932)
T ss_pred             HHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence            0000000001233334445556666666666655333333 2333333334677888776655443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.38  E-value=2.9e-05  Score=68.87  Aligned_cols=153  Identities=21%  Similarity=0.193  Sum_probs=101.3

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcH
Q 040048          310 ALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDW  389 (608)
Q Consensus       310 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  389 (608)
                      ++=+.+.++....+.+.+.|.. .-.+.||..+.++|++.+|..+|.+++..+.-.                        
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~------------------------  122 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAH------------------------  122 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC------------------------
Confidence            3334444444444445555542 345566666666677777776666665522222                        


Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHH
Q 040048          390 NTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE  469 (608)
Q Consensus       390 ~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  469 (608)
                                       .+.++..++...+..+++.+|...+++..+..|...        .+...+.+|..+...|++.
T Consensus       123 -----------------d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r--------~pd~~Ll~aR~laa~g~~a  177 (251)
T COG4700         123 -----------------DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR--------SPDGHLLFARTLAAQGKYA  177 (251)
T ss_pred             -----------------CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC--------CCCchHHHHHHHHhcCCch
Confidence                             246667777778888888888888888777776532        2566777888888888888


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048          470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL  525 (608)
Q Consensus       470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al  525 (608)
                      +|...|+.++...|+.....             ..+..+.++|+..+|..-+....
T Consensus       178 ~Aesafe~a~~~ypg~~ar~-------------~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         178 DAESAFEVAISYYPGPQARI-------------YYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             hHHHHHHHHHHhCCCHHHHH-------------HHHHHHHHhcchhHHHHHHHHHH
Confidence            88888888888888754432             45677788888777766655444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=9e-06  Score=81.99  Aligned_cols=312  Identities=11%  Similarity=0.044  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhh-----CC----------C
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAAL-IALGRLLEAVFECREAIRI-----EP----------H  330 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~-----~p----------~  330 (608)
                      +...+...+..+.|+.-++.++..-.++..+..++++.+.+. +..|.... ....+....+     .|          +
T Consensus        20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~   98 (696)
T KOG2471|consen   20 LLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQ   98 (696)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhc
Confidence            334455567788999999999988888877777667777654 44444322 1122221111     11          1


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHH---HHHHcCCCCh
Q 040048          331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETR---AAIAGGADSA  407 (608)
Q Consensus       331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~al~~~~~~~  407 (608)
                      ....+++.|.+|+...++..|+.........+.+-.  .......-+..-..+......++|+.++.   +.+.....  
T Consensus        99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le--~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~--  174 (696)
T KOG2471|consen   99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE--SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM--  174 (696)
T ss_pred             chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence            244678888889888888888887666543122111  11111112222233333444444443322   22111000  


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048          408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE  487 (608)
Q Consensus       408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  487 (608)
                                 ...|+...+-.....+.....+.....-.  ....+.......++.+.+...+....+.++.+..+.+.
T Consensus       175 -----------~~~gn~~~~nn~~kt~s~~aAe~s~~~a~--~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~  241 (696)
T KOG2471|consen  175 -----------KLVGNHIPANNLLKTLSPSAAERSFSTAD--LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSM  241 (696)
T ss_pred             -----------cccccccchhhhcccCCcchhcccchhhc--cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcH
Confidence                       00111111111111111000000000000  00222333333444455555555555555555544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh-cCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL-GLDPY--------NSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      ...            ..+..++..|++.+|.+.+...- ...|.        ...+|+++|.+++++|.|.-+..+|.+|
T Consensus       242 ~l~------------LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kA  309 (696)
T KOG2471|consen  242 ALL------------LKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKA  309 (696)
T ss_pred             HHH------------HHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence            433            45556666666666665554321 11111        1234556666666666666666666666


Q ss_pred             Hh-c--------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhhC
Q 040048          559 LN-V--------RP---------GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE  608 (608)
Q Consensus       559 l~-~--------~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~e  608 (608)
                      +. .        .|         ...+..|+.|..|...|+.-.|.++|.++....-.+|.+|..|.|
T Consensus       310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE  377 (696)
T KOG2471|consen  310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE  377 (696)
T ss_pred             HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            63 0        11         123455666666666666666666666666666666666665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.36  E-value=7.8e-06  Score=67.97  Aligned_cols=95  Identities=26%  Similarity=0.318  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRLANL  341 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~  341 (608)
                      .+-..|..+...|+.+.|++.|.++|.+.|..+.+|.+++..+.-+|+.++|+..+++++++..+.    -.++...|.+
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            456678889999999999999999999999999999999999999999999999999999986554    3478899999


Q ss_pred             HHHcCCHHHHHHHHHHhCC
Q 040048          342 YLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~  360 (608)
                      |..+|+.+.|...|+.+.+
T Consensus       125 yRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHHhCchHHHHHhHHHHHH
Confidence            9999999999999999866

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.0015  Score=66.47  Aligned_cols=326  Identities=14%  Similarity=0.006  Sum_probs=192.5

Q ss_pred             CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC---CCC----hhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHH
Q 040048          263 DPETLKIMGNEDY-KAGNFAEALALYDAAISID---PNK----ASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHR  333 (608)
Q Consensus       263 ~~~~~~~lg~~~~-~~g~~~~Al~~~~~al~~~---p~~----~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~  333 (608)
                      .+.....+|.+++ ...+++.|...++++..+.   |..    ..+...++.+|.... .+..|...+++++++....+.
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~  124 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY  124 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence            3455677777654 5788999999999988764   332    345778888888876 788888999999998777653


Q ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHH--HHHhhcHH---HHHHHHHHHHHcCC
Q 040048          334 ----AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD--AKRTRDWN---TLIQETRAAIAGGA  404 (608)
Q Consensus       334 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~---~A~~~~~~al~~~~  404 (608)
                          ..+.|+.++.-..++..|++.+.-...   ..+......+...+.+...  .....+..   .+......+.+...
T Consensus       125 wsckllfQLaql~~idkD~~sA~elLavga~---sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~  201 (629)
T KOG2300|consen  125 WSCKLLFQLAQLHIIDKDFPSALELLAVGAE---SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNIS  201 (629)
T ss_pred             hhHHHHHHHHHHHhhhccchhHHHHHhcccc---ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccC
Confidence                456788888888999999988654322   2232333344444444332  22222221   22222222222111


Q ss_pred             CChH------HHHHHH-HHHHH----------------------------------------------------------
Q 040048          405 DSAP------QIYALQ-AEALL----------------------------------------------------------  419 (608)
Q Consensus       405 ~~~~------~~~~~l-a~~~~----------------------------------------------------------  419 (608)
                      .+..      ..|..+ -..|.                                                          
T Consensus       202 sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~t  281 (629)
T KOG2300|consen  202 SDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVT  281 (629)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhH
Confidence            1100      000000 01111                                                          


Q ss_pred             -----HcCChHHHHHHhhcCCCCCCcccccc-cC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048          420 -----KLHKHQEADETLKNGPNFDVDETTRF-FG---PIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM  490 (608)
Q Consensus       420 -----~~g~~~eA~~~l~~al~~~p~~~~~~-~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  490 (608)
                           -.|-+++|.++-++++....+....- ..   ..-....+-.+..+-.-.|++.+|++....+.......+... 
T Consensus       282 v~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~-  360 (629)
T KOG2300|consen  282 VIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL-  360 (629)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH-
Confidence                 12334444443333332210000000 00   000123344566666778999999998888776554443321 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 040048          491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY-N--SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY--  565 (608)
Q Consensus       491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  565 (608)
                       +-+.-.+..+..+|.....-+.++.|...|..|.+.... +  +.+-.++|..|...|+-+.-.+.++   .+.|.+  
T Consensus       361 -Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~  436 (629)
T KOG2300|consen  361 -LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTN  436 (629)
T ss_pred             -HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCC
Confidence             112234556678899889999999999999999987442 2  3345578999999877544333332   344442  


Q ss_pred             --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          566 --------SKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       566 --------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                              ..+++..|...+.++++.||...+.+.+++.
T Consensus       437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                    4567888999999999999999999999987

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.3e-06  Score=80.25  Aligned_cols=94  Identities=22%  Similarity=0.415  Sum_probs=90.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      ..-|+.++...+|..|+.+|.++|.++|..+..|.+.+.|++++.+++.+.....+++++.|+...+++.+|.+......
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 040048          582 WEASMQDYEILKKE  595 (608)
Q Consensus       582 ~~~A~~~~~~al~l  595 (608)
                      |++|+..+.++..+
T Consensus        94 ~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   94 YDEAIKVLQRAYSL  107 (284)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999999664

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.35  E-value=4.7e-07  Score=91.72  Aligned_cols=106  Identities=28%  Similarity=0.492  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW  582 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~  582 (608)
                      ..+...+..+.|+.|+..|.+||+++|+.+..+-+.+.++.+.+++..|+..+.+|++++|....+|+..|.+...++++
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            66788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHhhC
Q 040048          583 EASMQDYEILKKEAPDDEEVDQALQE  608 (608)
Q Consensus       583 ~~A~~~~~~al~l~P~~~~~~~~L~e  608 (608)
                      .+|...|++...+.|+++.+.+.+.|
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~E  114 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDE  114 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence            99999999999999999999988754

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.32  E-value=0.0013  Score=65.12  Aligned_cols=268  Identities=16%  Similarity=0.095  Sum_probs=190.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 040048          303 NKTAALIALGRLLEAVFECREAIRIEPHY--HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC  380 (608)
Q Consensus       303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~  380 (608)
                      ..|.+-...|+-..|.+.-.++-++-..+  +-++..-++.-.-.|+++.|.+-|+..+.  +|+..     +.-+..+.
T Consensus        89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~--dPEtR-----llGLRgLy  161 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD--DPETR-----LLGLRGLY  161 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc--ChHHH-----HHhHHHHH
Confidence            34556666788888888888877544333  44566667777888999999999998874  44431     33344455


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC---CCcccccccCCCCcHHHHHH
Q 040048          381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF---DVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       381 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p~~~~~~~~~~~~~~~~~~  457 (608)
                      ....+.|+.+.|+.+.+.+....|... -.....-...+..|+|+.|+.+.+.....   .++..+..     .+.++..
T Consensus       162 leAqr~GareaAr~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~-----rAvLLtA  235 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERS-----RAVLLTA  235 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHH-----HHHHHHH
Confidence            566788999999999999998888764 34444456677899999999988765432   22211100     0222222


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN  537 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  537 (608)
                      .+.... .-+...|...-.+++++.|+......            .-+..+++.|+..++-.+++.+.+..|. +.++  
T Consensus       236 kA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav------------~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--  299 (531)
T COG3898         236 KAMSLL-DADPASARDDALEANKLAPDLVPAAV------------VAARALFRDGNLRKGSKILETAWKAEPH-PDIA--  299 (531)
T ss_pred             HHHHHh-cCChHHHHHHHHHHhhcCCccchHHH------------HHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--
Confidence            332222 34688999999999999999877664            6789999999999999999999999885 3322  


Q ss_pred             HHHHHHHcCCHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048          538 RAACRSKLGQFEKAIEDCN---AALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       538 la~~~~~~g~~~~A~~~~~---~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      +..++.+.|+  .++.-++   +...+.|++.+..+.++..-+.-|++..|..--+.+..+.|...-
T Consensus       300 ~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~  364 (531)
T COG3898         300 LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA  364 (531)
T ss_pred             HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence            2233444554  4444444   445578999999999999999999999999999999999987543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.5e-06  Score=79.86  Aligned_cols=97  Identities=28%  Similarity=0.437  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      ++-+...|+.++....|..|+.+|.++|.++|..+.+|.+.+.|++++.+++.+...+.++++++|+...+++.+|.+..
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            44566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCC
Q 040048          344 RLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~  360 (608)
                      ....|++|+..+.++..
T Consensus        90 ~s~~~~eaI~~Lqra~s  106 (284)
T KOG4642|consen   90 QSKGYDEAIKVLQRAYS  106 (284)
T ss_pred             hhccccHHHHHHHHHHH
Confidence            99999999999999844

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=0.00022  Score=72.25  Aligned_cols=314  Identities=17%  Similarity=0.061  Sum_probs=206.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC------C--HHHHHHHHHHH
Q 040048          272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA-IRIEPH------Y--HRAHHRLANLY  342 (608)
Q Consensus       272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~~p~------~--~~~~~~la~~~  342 (608)
                      ..+....+...+..-.+.++.+..+.+.+....+..++..|++.+|.+.+... +...|.      .  -..|.++|.++
T Consensus       214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh  293 (696)
T KOG2471|consen  214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH  293 (696)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence            34455666666666666677666677777777888888888888887776543 111222      1  12456778888


Q ss_pred             HHcCCHHHHHHHHHHhCCCC--------Cchh---HHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 040048          343 LRLGEVEKAIYHFKHAGPEA--------DQVD---IAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY  411 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~--------~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  411 (608)
                      +++|.|.-+..+|.++++..        .|..   ........+.++.|..+...|+...|.++|.++......+ |.+|
T Consensus       294 ~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlW  372 (696)
T KOG2471|consen  294 YQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLW  372 (696)
T ss_pred             eehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHH
Confidence            88888888777777776311        1111   1233457889999999999999999999999998876555 6788


Q ss_pred             HHHHHHHHHcCC-------------------------------------------------hHHHHHHhhcCCCCCCccc
Q 040048          412 ALQAEALLKLHK-------------------------------------------------HQEADETLKNGPNFDVDET  442 (608)
Q Consensus       412 ~~la~~~~~~g~-------------------------------------------------~~eA~~~l~~al~~~p~~~  442 (608)
                      ..+|++.....+                                                 .+-|.-+++.++-+-|+..
T Consensus       373 LRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q  452 (696)
T KOG2471|consen  373 LRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQ  452 (696)
T ss_pred             HHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhh
Confidence            888888763211                                                 1223344444443321100


Q ss_pred             ----------------------------ccccC--------CC-----------CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          443 ----------------------------TRFFG--------PI-----------GNANLLVVRAQVNLACGRFEDALAAI  475 (608)
Q Consensus       443 ----------------------------~~~~~--------~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~  475 (608)
                                                  +.+..        +.           -...++-..+.+-..+|+.-.|+..-
T Consensus       453 ~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a  532 (696)
T KOG2471|consen  453 DLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAA  532 (696)
T ss_pred             cchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHH
Confidence                                        00000        00           01345566777788899999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh------c-----------------CCCC--
Q 040048          476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL------G-----------------LDPY--  530 (608)
Q Consensus       476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al------~-----------------~~p~--  530 (608)
                      .+.++.. +-..++..+.       +...|.+++.+.+..+|...+.--+      .                 ++|.  
T Consensus       533 ~kLLq~~-~lS~~~kfLG-------HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~  604 (696)
T KOG2471|consen  533 TKLLQLA-DLSKIYKFLG-------HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTG  604 (696)
T ss_pred             HHHHhhh-hhhhHHHHHH-------HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCC
Confidence            9988753 3333443332       2356677778888888888765411      0                 1110  


Q ss_pred             -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          531 -------------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP--GYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       531 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                                   ....+++||.++.-.|++++|..++..|..+-+  ..+.+....-.+-.++|+...|...+++.--
T Consensus       605 r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~  683 (696)
T KOG2471|consen  605 RTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH  683 (696)
T ss_pred             CCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence                         134678999999999999999999999998877  4566666666667789999999988887643

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.29  E-value=0.0036  Score=64.70  Aligned_cols=67  Identities=7%  Similarity=0.015  Sum_probs=60.2

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      .+|.|.++|+.|-..+-.+ -+++....|++.+...|..+.+|.......+...+|+.....|.++|.
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4588999999998877666 999999999999999999999999999999999999999999988875

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=5.9e-06  Score=76.26  Aligned_cols=104  Identities=27%  Similarity=0.421  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGL--------DPYN----------SVLLCNRAACRSKLGQFEKAIEDCNAAL  559 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al  559 (608)
                      +..+...|+-+++.|+|.+|...|..|+..        .|..          ..++.+.+.|++..|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            344468899999999999999999998742        4443          3578899999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048          560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      ...|.+..+|+.+|.+....=+..+|...|.++++++|.-..
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            999999999999999999999999999999999999997654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.27  E-value=1.9e-06  Score=67.61  Aligned_cols=64  Identities=23%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C-C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISID---P-N---KASYRSNKTAALIALGRLLEAVFECREAIRI  327 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~---p-~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  327 (608)
                      +.++..+|.++...|+|++|+.+|++++++.   + +   .+.++.++|.++..+|++++|+.++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4578888999999999999999999988651   1 1   2456888888888888888888888888765

...

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.26  E-value=0.00032  Score=74.16  Aligned_cols=38  Identities=16%  Similarity=0.103  Sum_probs=32.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048          564 GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       564 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      ..+.++..++..+...|++++|-+.|-.+++++.-|..
T Consensus       993 k~~~vhlk~a~~ledegk~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen  993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred             cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch
Confidence            34678889999999999999999999999998876544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.00023  Score=66.06  Aligned_cols=208  Identities=14%  Similarity=0.054  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 040048          335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ  414 (608)
Q Consensus       335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l  414 (608)
                      |..-+.+|....+|++|..++.++.+ ...++...+.....+-..+.....+..|.++...++++               
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA---------------   97 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA---------------   97 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---------------
Confidence            33344555555566666665555543 22222222333333333444444455555555555544               


Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK  494 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  494 (608)
                      ...|.+.|..+-|-..++++-+                         .....++++|+.+|++++.+...+.....    
T Consensus        98 s~lY~E~GspdtAAmaleKAak-------------------------~lenv~Pd~AlqlYqralavve~~dr~~m----  148 (308)
T KOG1585|consen   98 SELYVECGSPDTAAMALEKAAK-------------------------ALENVKPDDALQLYQRALAVVEEDDRDQM----  148 (308)
T ss_pred             HHHHHHhCCcchHHHHHHHHHH-------------------------HhhcCCHHHHHHHHHHHHHHHhccchHHH----
Confidence            3456666666666555554432                         24456788999999988877655544432    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC
Q 040048          495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV----RPG  564 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~  564 (608)
                        ..+.+...++++.+..++++|-..+.+-...      .+.....+.....+|+...+|..|..+|+..-++    .++
T Consensus       149 --a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se  226 (308)
T KOG1585|consen  149 --AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE  226 (308)
T ss_pred             --HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence              2334457788888889998888777664432      2333345555556666677999999999987765    344


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          565 YSKARLRRADCFAKIEKWEASMQDYE  590 (608)
Q Consensus       565 ~~~a~~~la~~~~~~g~~~~A~~~~~  590 (608)
                      +..+.-+|-..| ..|+.++..+.+.
T Consensus       227 d~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  227 DSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            555666655444 4577776665544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.22  E-value=4.8e-06  Score=73.95  Aligned_cols=86  Identities=31%  Similarity=0.366  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 040048          280 FAEALALYDAAISIDPNKASYRSNKTAALIALGR----------LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE--  347 (608)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--  347 (608)
                      |+.|.+.++.....+|.+++.+++-|.++..+.+          +++|+.-|+++|.++|+..++++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6889999999999999999999999999887643          5778889999999999999999999999987753  


Q ss_pred             ---------HHHHHHHHHHhCCCCCchh
Q 040048          348 ---------VEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       348 ---------~~~A~~~~~~al~~~~p~~  366 (608)
                               |++|..+|+++.. .+|++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~-~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVD-EDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-H-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence                     4445555555554 45544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.18  E-value=0.00018  Score=74.43  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=93.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYN-SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW  582 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~  582 (608)
                      .|..+...|+...|++++..|+...|.. ...+.+||.++.+.|-.-.|-..+.+++.+....+..++.+|..|..+.+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            3445566899999999999999998865 356789999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          583 EASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       583 ~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +.|++.|+.|++++|+++++.+.|.
T Consensus       693 ~~a~~~~~~a~~~~~~~~~~~~~l~  717 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPECENSLK  717 (886)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHH
Confidence            9999999999999999999887664

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.0052  Score=62.67  Aligned_cols=207  Identities=12%  Similarity=-0.012  Sum_probs=137.6

Q ss_pred             HhhcHHHHHHHHHHHHHcCC-----C-Ch-------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCc
Q 040048          385 RTRDWNTLIQETRAAIAGGA-----D-SA-------PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGN  451 (608)
Q Consensus       385 ~~~~~~~A~~~~~~al~~~~-----~-~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~  451 (608)
                      -.|-++++.++-++++....     + ..       ...+..++.+-.-.|++.+|++.+..+.+..........-....
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            34667777777777765421     1 11       12344456667778999999887665544321111100101123


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  530 (608)
                      +.+...+|......+.++.|...|..+.++-.. +..+...          .++|..|...|+-+.-.+.++..-..+..
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n----------lnlAi~YL~~~~~ed~y~~ld~i~p~nt~  436 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN----------LNLAISYLRIGDAEDLYKALDLIGPLNTN  436 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH----------HhHHHHHHHhccHHHHHHHHHhcCCCCCC
Confidence            778888999889999999999999999886443 2223322          38899999988766555555443322211


Q ss_pred             C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          531 N-------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       531 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      .       ..+++..|...+..+++.||...+.+.++....      ..-.+..|+.+..-.|+..++.+...-++++..
T Consensus       437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK  516 (629)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence            1       457778888889999999999999999987521      133456788889999999999998888887654


Q ss_pred             CCHH
Q 040048          598 DDEE  601 (608)
Q Consensus       598 ~~~~  601 (608)
                      +-++
T Consensus       517 Ki~D  520 (629)
T KOG2300|consen  517 KIPD  520 (629)
T ss_pred             cCCC
Confidence            4433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.11  E-value=0.00079  Score=69.13  Aligned_cols=60  Identities=18%  Similarity=0.037  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK  477 (608)
Q Consensus       410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (608)
                      +...+|.+..++|+.+||++.++..++..|..        .+..+..++..+++..+.|.++...+.+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~--------~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNL--------DNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc--------chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            33445566666666666666666665554432        1245555666666666666666555554

The molecular function of this protein is uncertain.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.07  E-value=6.6e-06  Score=83.58  Aligned_cols=103  Identities=31%  Similarity=0.421  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      ++.+-..|+.++..++|+.|+..|.+||+++|+.+.++.+++.++...+++..|+..+.++++++|....+|+..|..+.
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            34456678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhH
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDI  367 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~  367 (608)
                      .++++.+|+..|+.... +.|++.
T Consensus        84 ~l~~~~~A~~~l~~~~~-l~Pnd~  106 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKK-LAPNDP  106 (476)
T ss_pred             hHHHHHHHHHHHHHhhh-cCcCcH
Confidence            99999999999999998 999884

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.05  E-value=0.00011  Score=72.92  Aligned_cols=140  Identities=14%  Similarity=0.075  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCC
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK-QAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~  531 (608)
                      -+|..+.....+.+..+.|...|.+|++..+....++.            ..|.+.+. .++.+.|..+|+.+++..|.+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~------------~~A~~E~~~~~d~~~A~~Ife~glk~f~~~   69 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYV------------AYALMEYYCNKDPKRARKIFERGLKKFPSD   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHH------------HHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence            35777778888888899999999999865555566654            66777666 566666999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS---KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      ..+|......+...|+.+.|...|++++..-|...   ..|......-.+.|+.+.....++++.+..|++..+..
T Consensus        70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen   70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            99999999999999999999999999999876654   67888888889999999999999999999999776654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.04  E-value=0.0059  Score=63.01  Aligned_cols=197  Identities=13%  Similarity=0.102  Sum_probs=114.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHH
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIE--------PHYHRAHHRLAN  340 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~  340 (608)
                      .+.+..+.|+|+.    +...+...+. .....+..+......++++++..+++++...-        +......+..-.
T Consensus         4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~   79 (352)
T PF02259_consen    4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV   79 (352)
T ss_pred             HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            3567778888888    3333333322 33566666777778899999988888876531        122222222222


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHH-HHHhhcHHHHHHHHHHHHH--cCCCChHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD-AKRTRDWNTLIQETRAAIA--GGADSAPQIYALQAEA  417 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~la~~  417 (608)
                      -+..+.+.+++......... . +..  .......|-.+-.. ......|+..+..-.-++.  ..+......+...+.+
T Consensus        80 ~lq~L~Elee~~~~~~~~~~-~-~~~--~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~  155 (352)
T PF02259_consen   80 KLQQLVELEEIIELKSNLSQ-N-PQD--LKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL  155 (352)
T ss_pred             HHhHHHHHHHHHHHHHhhcc-c-HHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            22333455555555433211 0 111  11112222222111 1112233333333333333  1244456788999999


Q ss_pred             HHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          418 LLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK  480 (608)
Q Consensus       418 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (608)
                      ..+.|.++.|...+.++....+.....      .+.+.+..+.++...|+..+|+..++..+.
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESL------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCC------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999998865332110      267888899999999999999999999888

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.02  E-value=0.0063  Score=67.66  Aligned_cols=321  Identities=16%  Similarity=0.046  Sum_probs=192.8

Q ss_pred             CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCC--h----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 040048          262 MDPETLKIMGNEDY-KAGNFAEALALYDAAISIDPNK--A----SYRSNKTAALIALGRLLEAVFECREAIRIEPHY---  331 (608)
Q Consensus       262 ~~~~~~~~lg~~~~-~~g~~~~Al~~~~~al~~~p~~--~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---  331 (608)
                      .++.+.+.+|.+++ ...++++|..++++++.+...+  .    .+.+.++.++.+.+... |+..+++.++.....   
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            34567889999988 7899999999999998887442  2    33567788888888777 999999999865441   


Q ss_pred             HH-HHHHH--HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC-----
Q 040048          332 HR-AHHRL--ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG-----  403 (608)
Q Consensus       332 ~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----  403 (608)
                      .. ..+.+  ...+...+++..|++.++.... ...........+...+..+.+....+..+++++.+.+++...     
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~-~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~  214 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQ-LANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL  214 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence            11 12222  2333334799999999988765 332112222334444555566667777777877777764321     


Q ss_pred             -CC-ChH--HHHHHHH--HHHHHcCChHHHHHHhhcC---C----CC------CCcc------------------ccccc
Q 040048          404 -AD-SAP--QIYALQA--EALLKLHKHQEADETLKNG---P----NF------DVDE------------------TTRFF  446 (608)
Q Consensus       404 -~~-~~~--~~~~~la--~~~~~~g~~~eA~~~l~~a---l----~~------~p~~------------------~~~~~  446 (608)
                       +. ..+  .++..+-  .++...|+++.+...+++.   +    ..      +++.                  ...|.
T Consensus       215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl  294 (608)
T PF10345_consen  215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL  294 (608)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence             11 111  2333333  3445667766665543321   1    11      0110                  01111


Q ss_pred             CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------H---HHHHHH--HHHHHHHHHHHHHHHHHc
Q 040048          447 GPI-GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK---------E---VNMVMR--KAKGVAAARSNGNALFKQ  511 (608)
Q Consensus       447 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~---~~~~l~--~~~~~~~~~~lg~~~~~~  511 (608)
                      ... -..-+|..-|...+..+..++|.++++++++.-.+..         .   +.....  ..-....+...+.+.+-.
T Consensus       295 ~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~  374 (608)
T PF10345_consen  295 PKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR  374 (608)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC
Confidence            100 0123344455666777777788888888876322211         0   100001  111233456788888999


Q ss_pred             CCHHHHHHHHHHhhcCC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCC---HHHHHH
Q 040048          512 AKFSEAAAAYGDGLGLD---P------YNSVLLCNRAACRSKLGQFEKAIEDCN--------AALNVRPGY---SKARLR  571 (608)
Q Consensus       512 g~~~eA~~~~~~al~~~---p------~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---~~a~~~  571 (608)
                      +++..|....+.+....   |      ..+..++..|..+...|+.+.|+..|.        .+....+..   .-+..+
T Consensus       375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LN  454 (608)
T PF10345_consen  375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALN  454 (608)
T ss_pred             cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHH
Confidence            99999999988777542   2      236788999999999999999999998        333333332   234467


Q ss_pred             HHHHHHHcCCHHH
Q 040048          572 RADCFAKIEKWEA  584 (608)
Q Consensus       572 la~~~~~~g~~~~  584 (608)
                      +..++...+.-..
T Consensus       455 l~~I~~~~~~~~~  467 (608)
T PF10345_consen  455 LAIILQYESSRDD  467 (608)
T ss_pred             HHHHhHhhcccch
Confidence            7777776665433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=7.6e-05  Score=69.15  Aligned_cols=187  Identities=14%  Similarity=0.103  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV  488 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  488 (608)
                      ..|...+.+|...+++++|..++.++.+-...+...|.    -+.++-..+.+.-....+.++..+|+++..+.-.+...
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp  107 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP  107 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence            44555577788888888888888888754443322222    26677777888888899999999999998765333221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 040048          489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNV-  561 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  561 (608)
                      -.       +......+--..+.-+.++|+++|++++.+-..+      .+.+-..+.++.+...|++|-..+.+-... 
T Consensus       108 dt-------AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  108 DT-------AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             ch-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence            11       0111244445567788999999999998763322      456677889999999999998888775432 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHh
Q 040048          562 -----RPGYSKARLRRADCFAKIEKWEASMQDYEILKKE----APDDEEVDQAL  606 (608)
Q Consensus       562 -----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~L  606 (608)
                           .++...++...-.+|....+|..|..+|+...++    .|++......|
T Consensus       181 ~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL  234 (308)
T KOG1585|consen  181 DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL  234 (308)
T ss_pred             HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence                 3444556667677777788999999999997765    34444444443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.02  E-value=0.0017  Score=71.07  Aligned_cols=280  Identities=13%  Similarity=-0.008  Sum_probs=175.1

Q ss_pred             chhHHHHhhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHHcC-----CH
Q 040048          250 EPTSLCRALSTRMDPETLKIMGNEDYKA-----GNFAEALALYDAAISI-----DPNKASYRSNKTAALIALG-----RL  314 (608)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~  314 (608)
                      ++..+++......+..+...+|.+++.-     .|.+.|+.+|+.+...     .-..+.+.+.+|.+|....     ++
T Consensus       230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~  309 (552)
T KOG1550|consen  230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY  309 (552)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence            4577777777778888888888888754     6889999999988771     1124567788888888743     66


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048          315 LEAVFECREAIRIEPHYHRAHHRLANLYLRLG---EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       315 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (608)
                      ..|+.+|.++-...  ++.+.+.+|.+|..-.   ++..|.++|..+.. .  .+      .                  
T Consensus       310 ~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~--G~------~------------------  360 (552)
T KOG1550|consen  310 EKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-A--GH------I------------------  360 (552)
T ss_pred             HHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-c--CC------h------------------
Confidence            77888888887654  4567888888887655   46678888877754 1  11      1                  


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc-C
Q 040048          392 LIQETRAAIAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-G  466 (608)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~-g  466 (608)
                                       ...+.++.+|..    ..+...|..++.++.+...            +.+...++.++..- +
T Consensus       361 -----------------~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~------------~~A~~~~~~~~~~g~~  411 (552)
T KOG1550|consen  361 -----------------LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN------------PSAAYLLGAFYEYGVG  411 (552)
T ss_pred             -----------------HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC------------hhhHHHHHHHHHHccc
Confidence                             223333333332    2345566666666655432            34344444443322 6


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 040048          467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR  542 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  542 (608)
                      +++.+...+....++.-........+        +.........    ..+...+...+.++...  .+..+...+|.+|
T Consensus       412 ~~~~~~~~~~~~a~~g~~~~q~~a~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y  481 (552)
T KOG1550|consen  412 RYDTALALYLYLAELGYEVAQSNAAY--------LLDQSEEDLFSRGVISTLERAFSLYSRAAAQ--GNADAILKLGDYY  481 (552)
T ss_pred             cccHHHHHHHHHHHhhhhHHhhHHHH--------HHHhccccccccccccchhHHHHHHHHHHhc--cCHHHHhhhccee
Confidence            66666555554444332222211100        0000101111    12455566666666543  5677888888888


Q ss_pred             HHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH
Q 040048          543 SKL----GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI---EKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       543 ~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~l~P~~~  600 (608)
                      ..-    .+++.|...|.++....   ..+.+++|.++..-   ..+..|.++|.++.+.+....
T Consensus       482 ~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~  543 (552)
T KOG1550|consen  482 YYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAY  543 (552)
T ss_pred             eecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhh
Confidence            765    35899999999998876   88899999888652   227899999999988766543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=4.2e-05  Score=73.90  Aligned_cols=105  Identities=29%  Similarity=0.501  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD  574 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~  574 (608)
                      ..+..-|+-|++..+|..|+..|.+.|+....+    +.+|.++|.|.+.+|+|..|+..+.+++.++|.+..++++=|.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            344578999999999999999999999874433    6789999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          575 CFAKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       575 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      |++.+.++.+|..+.+..++++-+...+.
T Consensus       162 c~~eLe~~~~a~nw~ee~~~~d~e~K~~~  190 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEGLQIDDEAKKAI  190 (390)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            99999999999888888877765554443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.0025  Score=58.95  Aligned_cols=186  Identities=17%  Similarity=0.127  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDP------NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH-----  332 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-----  332 (608)
                      ++.+..-|+.|....+|..|=..|.++-+..-      +-+..|...+.||. .++.++|+.++++++++..+-.     
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~a  112 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMA  112 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34455567777777888888888877765421      12345666666664 4599999999999998865542     


Q ss_pred             -HHHHHHHHHHHHc-CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048          333 -RAHHRLANLYLRL-GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI  410 (608)
Q Consensus       333 -~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  410 (608)
                       .-+..+|.+|..- .++++|+.+|+++-+ ....+......-..++..+.....+++|.+|+..|++.....-++...-
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae-~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK  191 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAE-YYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK  191 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHH-HHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence             3455788888654 888888888888765 3333322233334444445555555666666666665544322221000


Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN  489 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  489 (608)
                      |                                      .--..++.-|.+++...+.-.+...+++-.+++|...+..
T Consensus       192 y--------------------------------------s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  192 Y--------------------------------------SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             h--------------------------------------HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            0                                      0133445566677777777777777777777888765543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.00  E-value=1.2e-05  Score=55.03  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKT  305 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la  305 (608)
                      ++|+.+|..+...|++++|+.+|+++++.+|+++.+|..+|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            44555555555555555555555555555555555555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.98  E-value=1.5e-05  Score=54.61  Aligned_cols=40  Identities=25%  Similarity=0.145  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048          534 LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA  573 (608)
Q Consensus       534 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la  573 (608)
                      ++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444444444444444444444444444444444444444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.96  E-value=0.0069  Score=64.75  Aligned_cols=160  Identities=13%  Similarity=0.035  Sum_probs=117.6

Q ss_pred             HHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH-----HHHH----HcCCHHHHHHHHHHHHHhCCCChH
Q 040048          417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA-----QVNL----ACGRFEDALAAIQKAAKQDSNNKE  487 (608)
Q Consensus       417 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la-----~~~~----~~g~~~~A~~~~~~al~~~p~~~~  487 (608)
                      +.--.|+-+.++..+.++.+. .+-    .++   ...+..++     ..+.    .....+.|.+.+....+..|+..-
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~-~~i----~~~---la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l  268 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKS-ENI----RSP---LAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL  268 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhcc-CCc----chH---HHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH
Confidence            333468899999999988762 221    110   11111111     1111    245678899999999999998766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048          488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY----NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP  563 (608)
Q Consensus       488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  563 (608)
                      ...            ..|.++...|+.++|++.|++++.....    ....++.+|.++..+++|++|..+|.+.++.+.
T Consensus       269 fl~------------~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  269 FLF------------FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             HHH------------HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence            654            8899999999999999999999864332    245788999999999999999999999999754


Q ss_pred             CC-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 040048          564 GY-SKARLRRADCFAKIEKW-------EASMQDYEILKKEA  596 (608)
Q Consensus       564 ~~-~~a~~~la~~~~~~g~~-------~~A~~~~~~al~l~  596 (608)
                      -. ....|..|.|+...|+.       ++|.++|.++-.+.
T Consensus       337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            43 33447789999999999       88888888876543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=6e-05  Score=69.76  Aligned_cols=103  Identities=22%  Similarity=0.232  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCh----------hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKA----------SYRSNKTAALIALGRLLEAVFECREA  324 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~----------~~~~~la~~~~~~g~~~eA~~~~~~a  324 (608)
                      ...++...|+-++..|+|.+|...|..|+..        .|..+          ..+.+++.|+...|+|-++++.+..+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999753        34443          45789999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       325 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      +..+|.+..+++..|.++...=+..+|...|.++++ ++|.-
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~-ldpsl  297 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE-LDPSL  297 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cChhh
Confidence            999999999999999999999999999999999999 88865

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.94  E-value=0.0048  Score=68.58  Aligned_cols=303  Identities=16%  Similarity=0.145  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHHHhcCCC----ChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CH----HHHHHHHHHHHHcCCH
Q 040048          280 FAEALALYDAAISIDPN----KASYRSNKTAALI-ALGRLLEAVFECREAIRIEPH--YH----RAHHRLANLYLRLGEV  348 (608)
Q Consensus       280 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~  348 (608)
                      ...|+.|++-+++..+-    .+.+++.+|.+|+ ...++++|..++++++.+...  ..    .+.+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            34688889888852222    2457899999888 689999999999999887643  32    3556778899888877


Q ss_pred             HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC---CChHHH--HHHHHHHHHHcCC
Q 040048          349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA---DSAPQI--YALQAEALLKLHK  423 (608)
Q Consensus       349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~--~~~la~~~~~~g~  423 (608)
                      . |+..+++.++.........+. ....+.........+|+..|+..++.......   +....+  ....+.+....+.
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~  194 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS  194 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence            7 999999988722221111111 11112223333333899999999998887642   222222  3334556666777


Q ss_pred             hHHHHHHhhcCCC------CCCcccccccCCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHhCCCCh------
Q 040048          424 HQEADETLKNGPN------FDVDETTRFFGPIGNANLLVVRAQ--VNLACGRFEDALAAIQKA---AKQDSNNK------  486 (608)
Q Consensus       424 ~~eA~~~l~~al~------~~p~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~~p~~~------  486 (608)
                      .+++++.++++..      .+++..      .....+|..+-.  ++...|+++.+...+++.   +....+..      
T Consensus       195 ~~d~~~~l~~~~~~~~~~q~~~~~~------~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~  268 (608)
T PF10345_consen  195 PDDVLELLQRAIAQARSLQLDPSVH------IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD  268 (608)
T ss_pred             chhHHHHHHHHHHHHhhcccCCCCC------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence            7778777766522      222210      012344444443  455677776666554443   33221111      


Q ss_pred             -H-------------------HHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----C---C---CC----
Q 040048          487 -E-------------------VNMVMRK-AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----D---P---YN----  531 (608)
Q Consensus       487 -~-------------------~~~~l~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~---p---~~----  531 (608)
                       +                   ...++.. --.+..|..-|......+..++|.+++.++++.    .   +   ..    
T Consensus       269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~  348 (608)
T PF10345_consen  269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSE  348 (608)
T ss_pred             CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHH
Confidence             0                   0000000 011334445567777777777888888777753    1   1   10    


Q ss_pred             ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          532 ------------SVLLCNRAACRSKLGQFEKAIEDCNAALNVR---PG------YSKARLRRADCFAKIEKWEASMQDYE  590 (608)
Q Consensus       532 ------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~a~~~la~~~~~~g~~~~A~~~~~  590 (608)
                                  ..+++.++.+.+-.+++..|....+.+....   |.      .+..++..|..+...|+.+.|...|.
T Consensus       349 ~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  349 ASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence                        1245567888888999999999998887653   22      36788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.94  E-value=0.014  Score=61.52  Aligned_cols=310  Identities=12%  Similarity=0.035  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHh
Q 040048          280 FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN-LYLRLGEVEKAIYHFKHA  358 (608)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a  358 (608)
                      .+.+...|...|...|.....|...|..-.++|..+.+++.|++++.--|-..+.|..+-. +-...|+.+.-...|++|
T Consensus        61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A  140 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA  140 (577)
T ss_pred             HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3667777888888889888889999999999999999999999999988877777765443 334557777777788888


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-----cCChHHHHHHhhc
Q 040048          359 GPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK-----LHKHQEADETLKN  433 (608)
Q Consensus       359 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~-----~g~~~eA~~~l~~  433 (608)
                      +. ....+.........++   ......++|......|++.++..-......+...-...-.     +...+++...-..
T Consensus       141 ~~-~vG~dF~S~~lWdkyi---e~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~  216 (577)
T KOG1258|consen  141 KS-YVGLDFLSDPLWDKYI---EFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD  216 (577)
T ss_pred             HH-hcccchhccHHHHHHH---HHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence            76 3333322222222222   1225567788888888888776322211111111111111     1222222222111


Q ss_pred             CCCC-------CCcc-----cccccCCC---CcHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHH
Q 040048          434 GPNF-------DVDE-----TTRFFGPI---GNAN-----LLVVRAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEV  488 (608)
Q Consensus       434 al~~-------~p~~-----~~~~~~~~---~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~  488 (608)
                      ....       .|.+     ......+.   ....     .....=.++.......+.+-.++..+..     .|.+.. 
T Consensus       217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a-  295 (577)
T KOG1258|consen  217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA-  295 (577)
T ss_pred             HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH-
Confidence            1100       0000     00000000   0001     0011111222223333344444444331     111111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHH
Q 040048          489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV-RPGYSK  567 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~  567 (608)
                              ....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|+.+.
T Consensus       296 --------ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~  367 (577)
T KOG1258|consen  296 --------QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI  367 (577)
T ss_pred             --------HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH
Confidence                    12334456677778999999999999999888888999999999999999999999888888876 467788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      .+..-+.+-...|++..|...|+++.+..|+..++
T Consensus       368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~  402 (577)
T KOG1258|consen  368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV  402 (577)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence            88888888899999999999999999888876654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.0022  Score=62.31  Aligned_cols=160  Identities=13%  Similarity=0.037  Sum_probs=121.2

Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-DSNNKEVNMVMR  493 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~  493 (608)
                      +.++...|++.+|....++.++..|.+          .-++..--.+++.+|+...-...+++++.. +++.+-..++  
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtD----------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv--  177 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTD----------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYV--  177 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchh----------hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHH--
Confidence            455667788888888888888888876          455555666778888888888888888876 5555433221  


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHH
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY----SKAR  569 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~  569 (608)
                             .-.++..+...|-|++|.+..++++++++.+.++...++.++...|++.++.+...+.-..-...    ..-|
T Consensus       178 -------~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy  250 (491)
T KOG2610|consen  178 -------HGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY  250 (491)
T ss_pred             -------HHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh
Confidence                   12567778888999999999999999999999999999999999999999988887654332211    2345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          570 LRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      ..-|.++..-+.|+.|++.|.+-+
T Consensus       251 WH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  251 WHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHHhhhcccchhHHHHHHHHHH
Confidence            677888888899999999887644

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00011  Score=71.02  Aligned_cols=103  Identities=24%  Similarity=0.339  Sum_probs=92.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL  338 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  338 (608)
                      .++.+..-|+.|++..+|..|+.+|.+.|...-.+    +..|.++|.|.+..|+|..|+..+.+++.++|.+..++++-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            46678889999999999999999999999875444    45699999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      |.|++.+.++.+|...++..+. ++.+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~-~d~e~  186 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQ-IDDEA  186 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhh-hhHHH
Confidence            9999999999999999999876 54433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.85  E-value=0.00077  Score=67.00  Aligned_cols=137  Identities=8%  Similarity=-0.073  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA-LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      +|..+.....+.+..+.|..+|.+|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            577778888888889999999999997766678899999999777 5566669999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS  406 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  406 (608)
                      .|+.+.|...|++++..+.+.. .   .-..|......-...|+++.......++.+..|+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~-~---~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEK-Q---SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHH-H---CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             hCcHHHHHHHHHHHHHhcCchh-H---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            9999999999999998433332 1   12334444444556688888888888888877664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.83  E-value=1.8e-05  Score=50.64  Aligned_cols=32  Identities=16%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          555 CNAALNVRPGYSKARLRRADCFAKIEKWEASM  586 (608)
Q Consensus       555 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  586 (608)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56666666666666666666666666666664

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.82  E-value=0.00087  Score=68.81  Aligned_cols=104  Identities=13%  Similarity=-0.007  Sum_probs=76.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALNV-RPGYSKARLRRADCFAK  578 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~  578 (608)
                      ..+|.+..+.|+.+||++.|+..++..|.  +..++.+|..++..++.|.++...+.+--++ -|..+...+..|.+..+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            37888999999999999999999887664  4568888999999999999988888886443 25555555555554433


Q ss_pred             -cCC---------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          579 -IEK---------------WEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       579 -~g~---------------~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                       .++               -..|++.+.+|++.+|.-+.....
T Consensus       343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe  385 (539)
T PF04184_consen  343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE  385 (539)
T ss_pred             hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence             122               234778899999999987765544

The molecular function of this protein is uncertain.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.82  E-value=0.0012  Score=70.01  Aligned_cols=144  Identities=15%  Similarity=0.184  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH------HHhh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHH
Q 040048          301 RSNKTAALIALGRLLEAVFECRE------AIRI----EPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAK  369 (608)
Q Consensus       301 ~~~la~~~~~~g~~~eA~~~~~~------al~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~  369 (608)
                      |-.-|.+|.+..++++|+++|++      ++++    .|.. ...-...|.-+...|+++.|+.+|-.+--         
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------  734 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------  734 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence            34445666666777888888764      3332    2322 12233456777788888888888866422         


Q ss_pred             HHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048          370 AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI  449 (608)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~  449 (608)
                            .............|.+|+.+++..-.....  ...|-.++.-|...|+|+-|.++|.++-.             
T Consensus       735 ------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~-------------  793 (1636)
T KOG3616|consen  735 ------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADL-------------  793 (1636)
T ss_pred             ------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcch-------------
Confidence                  223334455667888888887766544322  24566778888889999999988877532             


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          450 GNANLLVVRAQVNLACGRFEDALAAIQKAA  479 (608)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al  479 (608)
                           ....-..|.+.|++++|..+-+++.
T Consensus       794 -----~~dai~my~k~~kw~da~kla~e~~  818 (1636)
T KOG3616|consen  794 -----FKDAIDMYGKAGKWEDAFKLAEECH  818 (1636)
T ss_pred             -----hHHHHHHHhccccHHHHHHHHHHhc
Confidence                 2224456778888888887776653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.80  E-value=4.1e-05  Score=49.08  Aligned_cols=33  Identities=15%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      .+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            456667777777777777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.79  E-value=2.1e-05  Score=50.31  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=18.3

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 040048          287 YDAAISIDPNKASYRSNKTAALIALGRLLEAV  318 (608)
Q Consensus       287 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  318 (608)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45555555555555555555555555555554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.76  E-value=7.1e-05  Score=47.87  Aligned_cols=33  Identities=12%  Similarity=0.312  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      .+|+.+|.++..+|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            466677777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.73  E-value=0.0069  Score=62.47  Aligned_cols=136  Identities=17%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN----KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG  526 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~  526 (608)
                      ....+...+.+....|+++.|...+.++....+..    +.+.            ...+.++...|+..+|+..++..+.
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~------------~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVF------------LEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchH------------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            37889999999999999999999999998865322    2332            2678999999999999999988877


Q ss_pred             C---CC-------------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCH
Q 040048          527 L---DP-------------------------------YNSVLLCNRAACRSKL------GQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       527 ~---~p-------------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~  566 (608)
                      .   ..                               ..+.++..+|......      +..++++..|.++++++|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            1   00                               0134666777777777      888999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC
Q 040048          567 KARLRRADCFAKIEK-----------------WEASMQDYEILKKEAPD  598 (608)
Q Consensus       567 ~a~~~la~~~~~~g~-----------------~~~A~~~~~~al~l~P~  598 (608)
                      .+|+.+|..+...=+                 ...|+..|-+++...++
T Consensus       293 k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  293 KAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999988766522                 13589999999999988

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.012  Score=65.00  Aligned_cols=238  Identities=18%  Similarity=0.136  Sum_probs=130.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE  349 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  349 (608)
                      +|.+....+-|++|...|++- ..   +..+.   -......+..+.|.++.+++     +.+.+|..+|.+..+.|...
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf-~~---n~~A~---~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-DM---NVSAI---QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHh-cc---cHHHH---HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence            456666677777777777652 11   11111   11223456666666666655     34678888888888888888


Q ss_pred             HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHH-----------------
Q 040048          350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA--PQI-----------------  410 (608)
Q Consensus       350 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~-----------------  410 (608)
                      +|++.|-++   -+|.         .+........+.|.|++.+.++.-+-+...+..  ..+                 
T Consensus      1122 dAieSyika---dDps---------~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA---DDPS---------NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             HHHHHHHhc---CCcH---------HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence            888888776   3443         355566667777888888877766655432211  111                 


Q ss_pred             -------HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          411 -------YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       411 -------~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                             ....|.-++..+.|+.|.-+|..                  ..-|..++..+..+|+|..|+...+++-..  
T Consensus      1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~-- 1249 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN------------------VSNFAKLASTLVYLGEYQGAVDAARKANST-- 1249 (1666)
T ss_pred             cCCCchhHHHHhHHHhhhhhhHHHHHHHHH------------------hhhHHHHHHHHHHHHHHHHHHHHhhhccch--
Confidence                   11123333333444444333322                  333455666666677777776666655321  


Q ss_pred             CChHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 040048          484 NNKEVNMVMRKA------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL  545 (608)
Q Consensus       484 ~~~~~~~~l~~~------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  545 (608)
                         ..|.....+                  -.++.+-.+...|...|-++|-+.+++.++-+..-+...+..||.+|.+-
T Consensus      1250 ---ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1250 ---KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             ---hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence               122111000                  00233345555666666666666666666666555555666666665543


Q ss_pred             CCHHHHHHHH
Q 040048          546 GQFEKAIEDC  555 (608)
Q Consensus       546 g~~~~A~~~~  555 (608)
                      + +++-.+.+
T Consensus      1327 k-p~km~EHl 1335 (1666)
T KOG0985|consen 1327 K-PEKMMEHL 1335 (1666)
T ss_pred             C-HHHHHHHH
Confidence            2 34333333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=7.2e-05  Score=47.91  Aligned_cols=32  Identities=34%  Similarity=0.727  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPN  296 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~  296 (608)
                      ++|+.+|.+++..|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.01  Score=65.59  Aligned_cols=250  Identities=12%  Similarity=0.038  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..|+.|..+|.+.++.|...+|++.|-+|     +++..|.....+..+.|.|++-+.++.-+-+... .+.+-..|-.+
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence            45778888888888888888888888664     5667777777778888888888887776654321 12222334444


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |.+.++..+-.+.+      ..|+.       .-.-..|.-....+.|+.|.-.|...         .-|..++..+..+
T Consensus      1176 yAkt~rl~elE~fi------~gpN~-------A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI------AGPNV-------ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred             HHHhchHHHHHHHh------cCCCc-------hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence            55555554443332      22221       11112233333334444443333221         2244455555555


Q ss_pred             CChHHHHHHhhcCCCCCC--ccccc------c-------cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048          422 HKHQEADETLKNGPNFDV--DETTR------F-------FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK  486 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p--~~~~~------~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  486 (608)
                      |+|+.|...-+++-....  .-+..      +       ....-+++-+-.+...|...|-|++-+.+++.++-+...+-
T Consensus      1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred             HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence            555555555554432110  00000      0       00011355666788888999999999999999988877665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---C-----CCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG---L-----DPYNSVLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~-----~p~~~~~~~~la~~~~~~g~~~~A~  552 (608)
                      ..+.            .+|.+|.+ -++++-.++++-...   +     .-+....|..+-.+|.+-..|+.|.
T Consensus      1314 gmfT------------ELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1314 GMFT------------ELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHHH------------HHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            5554            66766654 345555554443222   1     1134567777777777777777654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=9.9e-05  Score=47.19  Aligned_cols=34  Identities=32%  Similarity=0.718  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK  297 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~  297 (608)
                      |++|+.+|.+++..|++++|+.+|++++.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3556666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.002  Score=62.68  Aligned_cols=161  Identities=14%  Similarity=0.038  Sum_probs=86.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcC
Q 040048          271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-EPHY---HRAHHRLANLYLRLG  346 (608)
Q Consensus       271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~---~~~~~~la~~~~~~g  346 (608)
                      +......|++.+|....++.++..|.+..++..--.+++.+|+...-...+++++.. +++.   ..++-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            344455566666666666666666666555555555555566666666666665544 3333   334444555555666


Q ss_pred             CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048          347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE  426 (608)
Q Consensus       347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e  426 (608)
                      -|++|.+.-+++++ +++.+      .                                   -.....+.++...+++.+
T Consensus       190 ~y~dAEk~A~ralq-iN~~D------~-----------------------------------Wa~Ha~aHVlem~~r~Ke  227 (491)
T KOG2610|consen  190 IYDDAEKQADRALQ-INRFD------C-----------------------------------WASHAKAHVLEMNGRHKE  227 (491)
T ss_pred             cchhHHHHHHhhcc-CCCcc------h-----------------------------------HHHHHHHHHHHhcchhhh
Confidence            66666666666665 55555      2                                   233344556666666666


Q ss_pred             HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAA  479 (608)
Q Consensus       427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  479 (608)
                      +.+...+.-..-... .-.     -..-|...|.+++..+.|+.|++.|.+-+
T Consensus       228 g~eFM~~ted~Wr~s-~ml-----asHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  228 GKEFMYKTEDDWRQS-WML-----ASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHHHhcccchhhh-hHH-----HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            666655543322210 000     02334445666666677777777776543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.66  E-value=0.093  Score=53.58  Aligned_cols=137  Identities=10%  Similarity=-0.075  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS-----YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      .+...|-.+.+++++.+|...|.++.+...+.+.     .+.++..--+-+.+.+.-...+-..-+..|..+....-.|.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            4556788999999999999999998876655533     23333333344667777666666666778888888889999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchh--------HHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVD--------IAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG  402 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  402 (608)
                      ..++.++|.+|++.+...-.++....        .........-...+......|.+.++...+++.+..
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            99999999999998865543211111        011111222234566778888888888887777653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.61  E-value=0.0024  Score=56.72  Aligned_cols=93  Identities=18%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN----------------------SVLLCNRAACRSKLGQFEKAIEDCNAAL  559 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al  559 (608)
                      ...|......++.+.++..+++++.+....                      ..++..++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            345666777889999999999999873221                      2355677888899999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      ..+|.+..+|..+-.+|..+|+..+|+..|+++.+
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.60  E-value=5.5e-05  Score=73.60  Aligned_cols=95  Identities=22%  Similarity=0.350  Sum_probs=88.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW  582 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~  582 (608)
                      ..+.-.+..|.+++|++.|..++.++|..+.+|-..+.+++++++...|+..|..+++++|+...-|-..+.....+|+|
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34455667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 040048          583 EASMQDYEILKKEAP  597 (608)
Q Consensus       583 ~~A~~~~~~al~l~P  597 (608)
                      ++|..++..+.+++-
T Consensus       199 e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  199 EEAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999998764

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.59  E-value=0.0064  Score=61.75  Aligned_cols=179  Identities=11%  Similarity=0.015  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI----DPNKASYRSNKTAALIA---LGRLLEAVFECREA-IRIEPHYHR  333 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~a-l~~~p~~~~  333 (608)
                      .++++...+=..|....+|+.-+.+.+..-.+    -++...+.+.+|.++.+   .|+.++|+..+..+ ....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            45777888888899999999999998886665    44566778889999999   99999999999994 455677899


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHH-Hc-
Q 040048          334 AHHRLANLYLRL---------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAI-AG-  402 (608)
Q Consensus       334 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~-  402 (608)
                      .+..+|.+|..+         ...++|+..|.++.. ++++.......+..+...+..........+-...+...+ +. 
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg  297 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG  297 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence            999999988653         357899999999998 887765444444443333332222112222111111111 11 


Q ss_pred             --CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048          403 --GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE  441 (608)
Q Consensus       403 --~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  441 (608)
                        .+...-..+..++.+..-.|++++|+..+++++...|..
T Consensus       298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence              122223445567788888999999999999999987764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.58  E-value=0.05  Score=59.99  Aligned_cols=253  Identities=15%  Similarity=0.036  Sum_probs=161.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN--K-------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-  331 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-  331 (608)
                      ..|..-...+.......++.+|..+..++...-+.  .       +...-..|.+....|++++|++..+.++..-|.. 
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            45666777888899999999999999988765443  1       3445667888889999999999999999977765 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--HHHHHHHHHHHH----H
Q 040048          332 ----HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--WNTLIQETRAAI----A  401 (608)
Q Consensus       332 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al----~  401 (608)
                          ..++..+|.+..-.|++++|..+...+.+ ...........+.+.+..+.+....|.  +.+....+...-    .
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~  571 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE  571 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence                45778889999999999999999888766 433333334445566667777777783  333333332222    1


Q ss_pred             cCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          402 GGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ  481 (608)
Q Consensus       402 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  481 (608)
                      ..|-+.. .....+.++...-+++.+.......++........-.   ....+++.++.+++..|++++|...+.+...+
T Consensus       572 q~~~~~f-~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~---~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         572 QKPRHEF-LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPL---LSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             hcccchh-HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            2222211 2222333333333377776666666654322111000   11333458999999999999999999988775


Q ss_pred             CCCC-hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048          482 DSNN-KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL  525 (608)
Q Consensus       482 ~p~~-~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al  525 (608)
                      .... +.+.. .     +.++..........|+..+|.....+..
T Consensus       648 ~~~~~~~~~~-~-----a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         648 LLNGQYHVDY-L-----AAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             hcCCCCCchH-H-----HHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            5443 11111 0     1111233345567889998888887744

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.55  E-value=5.3e-05  Score=73.68  Aligned_cols=97  Identities=24%  Similarity=0.328  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG  346 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  346 (608)
                      ....+...+..|++++|++.|..+|.++|..+..|..++.+++.+++...|+..|..+++++|+....|-..+.....+|
T Consensus       117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence            33456677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhCCCCCc
Q 040048          347 EVEKAIYHFKHAGPEADQ  364 (608)
Q Consensus       347 ~~~~A~~~~~~al~~~~p  364 (608)
                      ++++|...+..+.+ ++-
T Consensus       197 ~~e~aa~dl~~a~k-ld~  213 (377)
T KOG1308|consen  197 NWEEAAHDLALACK-LDY  213 (377)
T ss_pred             chHHHHHHHHHHHh-ccc
Confidence            99999999999877 443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.55  E-value=0.017  Score=58.63  Aligned_cols=175  Identities=13%  Similarity=0.048  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCC
Q 040048          408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA---CGRFEDALAAIQKA-AKQDS  483 (608)
Q Consensus       408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p  483 (608)
                      +++...+-..|....+|+.-+.+.+..-.+.-.+      ......+...+|.++.+   .|+.++|+..+..+ ....+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~  214 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD------VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN  214 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence            4555666677888889988888877765542111      11236777888999988   99999999999994 45566


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHH---------HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          484 NNKEVNMVMRKAKGVAAARSNGNALF---------KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED  554 (608)
Q Consensus       484 ~~~~~~~~l~~~~~~~~~~~lg~~~~---------~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  554 (608)
                      .+++.+.++            |.+|.         .....++|+.+|.++.+.+|+ ...-.|++.++...|.-.+....
T Consensus       215 ~~~d~~gL~------------GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~e  281 (374)
T PF13281_consen  215 PDPDTLGLL------------GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEE  281 (374)
T ss_pred             CChHHHHHH------------HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHH
Confidence            677777643            44432         233478999999999999964 44445677777777764433322


Q ss_pred             HHHHH-hc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048          555 CNAAL-NV-----------RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       555 ~~~al-~~-----------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      .++.. .+           .-.+...+-.++.+..-.|++++|++.+++++.+.|..-+
T Consensus       282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            22222 11           1223455567788888899999999999999999886544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.54  E-value=0.006  Score=65.19  Aligned_cols=167  Identities=17%  Similarity=0.044  Sum_probs=127.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhH-----HHHHHH-HHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048          269 IMGNEDYKAGNFAEALALYDAAISIDPNK-ASY-----RSNKTA-ALI----ALGRLLEAVFECREAIRIEPHYHRAHHR  337 (608)
Q Consensus       269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~-----~~~la~-~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~  337 (608)
                      .+-...--.||-+.++..+.++.+...-. +.+     .+..+. .+.    .....+.|.+.+.......|+..-.++.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~  272 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF  272 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            33334445699999999999988732211 111     111111 111    2456788999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 040048          338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA  417 (608)
Q Consensus       338 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~  417 (608)
                      .|.++...|+.++|++.|++++. ..  ..........++.++..+..+.+|++|...+....+...-+.....+..|.+
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~-~q--~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIE-SQ--SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhcc-ch--hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            99999999999999999999864 22  2233344566889999999999999999999999998777777778888999


Q ss_pred             HHHcCCh-------HHHHHHhhcCCCCC
Q 040048          418 LLKLHKH-------QEADETLKNGPNFD  438 (608)
Q Consensus       418 ~~~~g~~-------~eA~~~l~~al~~~  438 (608)
                      +...++.       ++|..++.++....
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999999       88888888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.45  E-value=0.011  Score=53.63  Aligned_cols=97  Identities=10%  Similarity=0.069  Sum_probs=78.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-SKARLRRADCFA  577 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~  577 (608)
                      ..++..+...+++++|+..++.++....+.   ..+-..||.+...+|++++|+..+.....  ++. +..-...|+++.
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill  170 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence            478899999999999999999999764433   35667899999999999999988876432  222 233567899999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH
Q 040048          578 KIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      ..|+-++|+..|+++++.+++..
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         171 AKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCChH
Confidence            99999999999999999985443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.44  E-value=0.0032  Score=55.87  Aligned_cols=94  Identities=19%  Similarity=0.205  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNK----------------------ASYRSNKTAALIALGRLLEAVFECREA  324 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~eA~~~~~~a  324 (608)
                      +...|......|+.+.++..+++++.+....                      ..+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3444666778899999999999999875322                      134566777888999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048          325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       325 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      +..+|.+..+|..+..+|...|+..+|+..|++...
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.11  Score=55.62  Aligned_cols=180  Identities=16%  Similarity=0.110  Sum_probs=98.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH----------HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYR----------SNKTAALIALGRLLEAVFECREAIRIEP  329 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~eA~~~~~~al~~~p  329 (608)
                      ..++|..|..+|+.....-.++.|...|-+.-... . ....          ...+.+-.--|++++|.+.|-.+-+   
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr---  762 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR---  762 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch---
Confidence            35677788888877777777777766665542211 1 0111          2233333445677777776644321   


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 040048          330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQ  409 (608)
Q Consensus       330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  409 (608)
                      .+     .-..++..+|+|-.-...++..-.     +......-.++.+.+..+..+..|++|.++|...-         
T Consensus       763 rD-----LAielr~klgDwfrV~qL~r~g~~-----d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~---------  823 (1189)
T KOG2041|consen  763 RD-----LAIELRKKLGDWFRVYQLIRNGGS-----DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG---------  823 (1189)
T ss_pred             hh-----hhHHHHHhhhhHHHHHHHHHccCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence            11     112345556666666655554322     11222334556666777777777777777765532         


Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK  477 (608)
Q Consensus       410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  477 (608)
                      -...+..++.....|++-..+.+...+              +...+-.+|..+...|.-++|++.|-+
T Consensus       824 ~~e~~~ecly~le~f~~LE~la~~Lpe--------------~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  824 DTENQIECLYRLELFGELEVLARTLPE--------------DSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             chHhHHHHHHHHHhhhhHHHHHHhcCc--------------ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            123345666666666655554444432              144555567777777777777666643

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.36  E-value=0.098  Score=57.81  Aligned_cols=208  Identities=15%  Similarity=0.045  Sum_probs=134.3

Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCC--------ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGAD--------SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI  449 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~  449 (608)
                      ..+........+.+|.....++...-+.        .........|.+....|++++|++..+.++..-|......    
T Consensus       420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~----  495 (894)
T COG2909         420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS----  495 (894)
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh----
Confidence            3344445556666666665555432221        1235566778899999999999999999988777643221    


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHh---
Q 040048          450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAK--FSEAAAAYGDG---  524 (608)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~--~~eA~~~~~~a---  524 (608)
                       ...++..+|.+..-.|++++|..+...+.+........+.      .+.+....+.++..+|+  +.+....|...   
T Consensus       496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q  568 (894)
T COG2909         496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL------ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ  568 (894)
T ss_pred             -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence             2678888999999999999999999999887443322221      12233466788888883  33333333322   


Q ss_pred             -hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          525 -LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR----PGY--S-KARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       525 -l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~-~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                       +...|-+.......+.++...-+++.+.....+.+++.    |..  . -+++.|+.+++..|++++|...+.....+-
T Consensus       569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence             22344444444444444444444777777777776653    222  2 233589999999999999999998887654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.28  E-value=0.00048  Score=43.96  Aligned_cols=32  Identities=16%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666777777777777777777777776664

...

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.28  E-value=0.049  Score=56.66  Aligned_cols=220  Identities=9%  Similarity=0.028  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhH
Q 040048          316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGE--------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT  381 (608)
Q Consensus       316 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~  381 (608)
                      .-.-.|++++..-+..+++|+..+..+...++              .+++..+|++++..+...+      ...++.++.
T Consensus       263 Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~------~~Ly~~~a~  336 (656)
T KOG1914|consen  263 RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN------KLLYFALAD  336 (656)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHh
Confidence            34456777887778888888877776666665              6778888888865222221      233333333


Q ss_pred             HHHHhhc---HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 040048          382 DAKRTRD---WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVR  458 (608)
Q Consensus       382 ~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l  458 (608)
                      .-...-+   ++..-.++.+++........-+|..+.....+..-...|..+|.++-+.....          ..++..-
T Consensus       337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~----------hhVfVa~  406 (656)
T KOG1914|consen  337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR----------HHVFVAA  406 (656)
T ss_pred             hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----------chhhHHH
Confidence            3222222   56666677777766444444556666666666777778888888776543221          2444444


Q ss_pred             HHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCC-CHHH
Q 040048          459 AQV-NLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPY-NSVL  534 (608)
Q Consensus       459 a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~-~~~~  534 (608)
                      |.+ |...++.+-|...|+-.++..++.+....            .....+...++-..|..+|++++..  .++ ...+
T Consensus       407 A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~------------~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~I  474 (656)
T KOG1914|consen  407 ALMEYYCSKDKETAFRIFELGLKKFGDSPEYVL------------KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEI  474 (656)
T ss_pred             HHHHHHhcCChhHHHHHHHHHHHhcCCChHHHH------------HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHH
Confidence            433 45678888888888888888888887654            4456677788888888888888876  332 2466


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048          535 LCNRAACRSKLGQFEKAIEDCNAALNVRP  563 (608)
Q Consensus       535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  563 (608)
                      |..+-..-..-|+...+++.-++-....|
T Consensus       475 w~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  475 WDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            77776777777888777777666555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.011  Score=57.22  Aligned_cols=141  Identities=17%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS  532 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  532 (608)
                      +.-+..+.-....|++.+|...|..++...|++.++..            .++.+|...|+.+.|...+...-.......
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~------------~la~~~l~~g~~e~A~~iL~~lP~~~~~~~  202 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKL------------LLAECLLAAGDVEAAQAILAALPLQAQDKA  202 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHH------------HHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence            34445666778899999999999999999999988876            889999999999999998877533322221


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHh
Q 040048          533 -VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP--DDEEVDQAL  606 (608)
Q Consensus       533 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~L  606 (608)
                       ..+.....++.+.....+ ...+++.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+-  ++..+++.|
T Consensus       203 ~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         203 AHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             HHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence             111112233333333332 2345666778999999999999999999999999999988887653  344455444

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.21  Score=47.47  Aligned_cols=87  Identities=20%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HH
Q 040048          274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE-KA  351 (608)
Q Consensus       274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A  351 (608)
                      +.+...-..|+.+-..+|.++|.+..+|..+-.++..++ +..+-++++.++++-+|.+..+|...-.+....|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            445556678888888899999998888888877777654 5677788888888888988888888877777777766 55


Q ss_pred             HHHHHHhCC
Q 040048          352 IYHFKHAGP  360 (608)
Q Consensus       352 ~~~~~~al~  360 (608)
                      ++..+.++.
T Consensus       133 Lef~~~~l~  141 (318)
T KOG0530|consen  133 LEFTKLMLD  141 (318)
T ss_pred             HHHHHHHHh
Confidence            666666554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.13  E-value=0.14  Score=51.26  Aligned_cols=184  Identities=15%  Similarity=0.004  Sum_probs=135.3

Q ss_pred             HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH
Q 040048          385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL----HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ  460 (608)
Q Consensus       385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~----g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~  460 (608)
                      ...++..++..+..+-....   ......++.+|..-    .+..+|..+|+.+...            +++.+.+.+|.
T Consensus        53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~------------g~~~a~~~lg~  117 (292)
T COG0790          53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD------------GLAEALFNLGL  117 (292)
T ss_pred             ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc------------ccHHHHHhHHH
Confidence            34567777777777665221   25666677777653    4688899999965543            24788888999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHhhcCC
Q 040048          461 VNLA----CGRFEDALAAIQKAAKQDSNNK-EVNMVMRKAKGVAAARSNGNALFKQ-----A--KFSEAAAAYGDGLGLD  528 (608)
Q Consensus       461 ~~~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~lg~~~~~~-----g--~~~eA~~~~~~al~~~  528 (608)
                      +|..    ..++.+|..+|+++........ ...            ..+|.+|..-     -  +...|+..|.++....
T Consensus       118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~------------~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~  185 (292)
T COG0790         118 MYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM------------YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG  185 (292)
T ss_pred             HHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH------------HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence            9987    5599999999999988755443 112            2556665553     1  2347999999988775


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHH
Q 040048          529 PYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE---------------KWEASMQDY  589 (608)
Q Consensus       529 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---------------~~~~A~~~~  589 (608)
                        ++.+.+.+|.+|..    ..++.+|..+|.++.+...  ..+.+.++ ++...|               +...|...+
T Consensus       186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~  260 (292)
T COG0790         186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWL  260 (292)
T ss_pred             --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHH
Confidence              78899999988866    3489999999999999876  88889999 777666               888999999


Q ss_pred             HHHHHhCCCCH
Q 040048          590 EILKKEAPDDE  600 (608)
Q Consensus       590 ~~al~l~P~~~  600 (608)
                      .++....+...
T Consensus       261 ~~~~~~~~~~~  271 (292)
T COG0790         261 QKACELGFDNA  271 (292)
T ss_pred             HHHHHcCChhH
Confidence            99887765443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.12  E-value=0.51  Score=50.16  Aligned_cols=316  Identities=10%  Similarity=0.052  Sum_probs=209.6

Q ss_pred             hhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhh
Q 040048          251 PTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAAL-IALGRLLEAVFECREAIRI  327 (608)
Q Consensus       251 a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~  327 (608)
                      +...+...+.  |..-..|...|..-++.|..+.++..|++++.--|-....|..+-... -..|+.+.-...|++|+..
T Consensus        64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~  143 (577)
T KOG1258|consen   64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSY  143 (577)
T ss_pred             HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence            3444555543  666778899999999999999999999999999998888776654443 3467888888889999886


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH------hhcHHHHHHHHHH
Q 040048          328 EPHY---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR------TRDWNTLIQETRA  398 (608)
Q Consensus       328 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~  398 (608)
                      ...+   ...|-.+-.....++++..-...|++.++ +....      +..++..-.....      +...++++..-..
T Consensus       144 vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile-iP~~~------~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~  216 (577)
T KOG1258|consen  144 VGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE-IPLHQ------LNRHFDRFKQLLNQNEEKILLSIDELIQLRSD  216 (577)
T ss_pred             cccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh-hhhhH------hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence            5543   34555555556777888888888888876 32222      1111111111111      1111222111111


Q ss_pred             HH-------------------Hc--CCCCh-HH-------HHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048          399 AI-------------------AG--GADSA-PQ-------IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI  449 (608)
Q Consensus       399 al-------------------~~--~~~~~-~~-------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~  449 (608)
                      ..                   ..  .|... ..       .....=.++.......+.+..++..+..---.....  ..
T Consensus       217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl--~~  294 (577)
T KOG1258|consen  217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL--DQ  294 (577)
T ss_pred             HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc--cH
Confidence            11                   00  01100 00       111112233344445556666666665311000000  00


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-C
Q 040048          450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-D  528 (608)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~  528 (608)
                      .....|......-...|+++.....|++++--.....+.|.            ..+......|+.+-|-..+.++.++ .
T Consensus       295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWi------------ky~~~m~~~~~~~~~~~~~~~~~~i~~  362 (577)
T KOG1258|consen  295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWI------------KYARWMESSGDVSLANNVLARACKIHV  362 (577)
T ss_pred             HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHH------------HHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence            13566777777888999999999999999988888888886            6667777779999999888888876 4


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ  587 (608)
Q Consensus       529 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~  587 (608)
                      +..+.+...-+.+-...|+++.|...+++..+-.|+...+-........+.|+.+.+..
T Consensus       363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            66677888888888889999999999999999889998888888888889999988873

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.027  Score=54.44  Aligned_cols=136  Identities=19%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      ..+.-+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+...-....+.  .+..     
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~-----  205 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHG-----  205 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHH-----
Confidence            445566777888899999999999999999999999999999999999999998888776542222111  1111     


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH  422 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g  422 (608)
                           ....++.+.++-. ..+.                            ..+++.+..+|++ ...-+.+|..+...|
T Consensus       206 -----l~a~i~ll~qaa~-~~~~----------------------------~~l~~~~aadPdd-~~aa~~lA~~~~~~g  250 (304)
T COG3118         206 -----LQAQIELLEQAAA-TPEI----------------------------QDLQRRLAADPDD-VEAALALADQLHLVG  250 (304)
T ss_pred             -----HHHHHHHHHHHhc-CCCH----------------------------HHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Confidence                 0111333333322 1110                            1122333344544 356677788888888


Q ss_pred             ChHHHHHHhhcCCCCCCc
Q 040048          423 KHQEADETLKNGPNFDVD  440 (608)
Q Consensus       423 ~~~eA~~~l~~al~~~p~  440 (608)
                      +.++|.+.+-..++.+..
T Consensus       251 ~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         251 RNEAALEHLLALLRRDRG  268 (304)
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            888888877666665443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.08  E-value=0.063  Score=58.86  Aligned_cols=244  Identities=18%  Similarity=0.098  Sum_probs=159.8

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcC--
Q 040048          279 NFAEALALYDAAISIDPNKASYRSNKTAALIAL-----GRLLEAVFECREAIRI-----EPHYHRAHHRLANLYLRLG--  346 (608)
Q Consensus       279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--  346 (608)
                      +..+|..+|+.+-+.  .+..+.+.+|.||..-     .+.+.|+.+|+.+.+.     .-.++.+.+.+|.+|....  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            456788888887665  4678888999998865     6899999999998771     1114557778888887743  


Q ss_pred             ---CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC-
Q 040048          347 ---EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH-  422 (608)
Q Consensus       347 ---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g-  422 (608)
                         +++.|+.+|.++.. ...                                           +...+.+|.++..-. 
T Consensus       305 ~~~d~~~A~~~~~~aA~-~g~-------------------------------------------~~a~~~lg~~~~~g~~  340 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAE-LGN-------------------------------------------PDAQYLLGVLYETGTK  340 (552)
T ss_pred             ccccHHHHHHHHHHHHh-cCC-------------------------------------------chHHHHHHHHHHcCCc
Confidence               56667777777654 221                                           234556666666544 


Q ss_pred             --ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040048          423 --KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK  496 (608)
Q Consensus       423 --~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  496 (608)
                        ++..|..+|..+...            ++..+.+.++.+|..    ..+...|..++.++.+..  ++.+..      
T Consensus       341 ~~d~~~A~~yy~~Aa~~------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~------  400 (552)
T KOG1550|consen  341 ERDYRRAFEYYSLAAKA------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAY------  400 (552)
T ss_pred             cccHHHHHHHHHHHHHc------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHH------
Confidence              567888888888754            458888999988865    357899999999999887  222222      


Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHH
Q 040048          497 GVAAARSNGNALFKQ-AKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKL----GQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~  567 (608)
                            .++..+... +.+..+...+....+..-..    ...+..........    .+.+.+...+.++..  ..+..
T Consensus       401 ------~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~  472 (552)
T KOG1550|consen  401 ------LLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNAD  472 (552)
T ss_pred             ------HHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHH
Confidence                  222322221 67777666665554442211    11222222111111    245566666666654  45678


Q ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q 040048          568 ARLRRADCFAKI----EKWEASMQDYEILKKEA  596 (608)
Q Consensus       568 a~~~la~~~~~~----g~~~~A~~~~~~al~l~  596 (608)
                      +...+|.+|+.-    .+++.|...|.++....
T Consensus       473 a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  473 AILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             HHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence            889999998775    46999999999988766

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.00  E-value=0.15  Score=50.56  Aligned_cols=122  Identities=20%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             HHcCCHHHHHHHHHHHHhcC----CCC----hhHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---CC-------
Q 040048          275 YKAGNFAEALALYDAAISID----PNK----ASYRSNKTAALIALG-RLLEAVFECREAIRI----EP---HY-------  331 (608)
Q Consensus       275 ~~~g~~~~Al~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~eA~~~~~~al~~----~p---~~-------  331 (608)
                      ..+|+++.|..+|.++-...    |+.    ...+++.|......+ ++++|+.+++++.++    .+   ..       
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            45677777777777765543    222    234667777777777 777777777777765    11   11       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHH---HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC
Q 040048          332 HRAHHRLANLYLRLGEVEKAI---YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG  403 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  403 (608)
                      ..++..++.+|...+.++...   ...+.+.. -.|+.      ...++..-.+..+.++.+.+.+.+.+++...
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~------~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNK------PEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCC------cHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            235666777777766654333   23332222 22222      1222222222222566666666666666543

It is also involved in sporulation [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.99  E-value=0.092  Score=56.12  Aligned_cols=130  Identities=15%  Similarity=0.055  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCch-hHHHH-HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 040048          331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQV-DIAKA-KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP  408 (608)
Q Consensus       331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  408 (608)
                      ++..|..+|..-...-.++-|...|-+.-. ...- ...+. ....--...+.+....|.+++|.+.|-.+-.       
T Consensus       691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr-------  762 (1189)
T KOG2041|consen  691 HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR-------  762 (1189)
T ss_pred             chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch-------
Confidence            356677777666666666666666655432 1100 00000 0001112233444444666666665543211       


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA  478 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  478 (608)
                        .-+...++.++|+|-....+++..-.-+.+.        +...++..+|..+..+..+++|.++|...
T Consensus       763 --rDLAielr~klgDwfrV~qL~r~g~~d~dD~--------~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  763 --RDLAIELRKKLGDWFRVYQLIRNGGSDDDDE--------GKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             --hhhhHHHHHhhhhHHHHHHHHHccCCCcchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              1112344455566665555555543322221        12455666666666666666666666543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.98  E-value=0.0013  Score=41.96  Aligned_cols=31  Identities=26%  Similarity=0.548  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDP  295 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p  295 (608)
                      ++|+.+|.++...|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455555555555555555555555555555

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.21  Score=45.40  Aligned_cols=104  Identities=14%  Similarity=0.105  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ..+.+.+|..+...+++++|+..++.++....+. ....+        +-.+++.+....|++++|+..+....... -.
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-~lk~l--------~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~  158 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDE-NLKAL--------AALRLARVQLQQKKADAALKTLDTIKEES-WA  158 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH-HHHHH--------HHHHHHHHHHHhhhHHHHHHHHhcccccc-HH
Confidence            4556678889999999999999999988654332 22111        12389999999999999999887654321 12


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      +......|.++...|+-++|+..|+++++..++.
T Consensus       159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         159 AIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            3445678999999999999999999999987554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.89  E-value=0.18  Score=51.35  Aligned_cols=71  Identities=13%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048          286 LYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG  359 (608)
Q Consensus       286 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  359 (608)
                      .|++++..-|-.++.|+.....+...++-+.|+...++++...|.   ....++.+|....+-++-..+|++++
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~  360 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT  360 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence            456666666667777777777777777777777777777666655   56666777766666666556666554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.85  E-value=0.0022  Score=40.41  Aligned_cols=32  Identities=28%  Similarity=0.570  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      +++.+|.++..+|++++|+..|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56677777777777777777777777777753

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.80  E-value=0.66  Score=46.37  Aligned_cols=194  Identities=18%  Similarity=0.047  Sum_probs=115.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---
Q 040048          272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL----GRLLEAVFECREAIRIEPHYHRAHHRLANLYLR---  344 (608)
Q Consensus       272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---  344 (608)
                      ......+++..|+..+..+-..  .+......++.+|...    .+..+|+.+|+.+.  ...++.+.+.||.+|..   
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g  124 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG  124 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence            3344667778888888777652  2335677777777653    45777888887443  44566777778877766   


Q ss_pred             -cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048          345 -LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK  423 (608)
Q Consensus       345 -~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~  423 (608)
                       ..++.+|..+|+++..                                         .+..........++.+|..-. 
T Consensus       125 v~~d~~~A~~~~~~Aa~-----------------------------------------~g~~~a~~~~~~l~~~~~~g~-  162 (292)
T COG0790         125 VPLDLVKALKYYEKAAK-----------------------------------------LGNVEAALAMYRLGLAYLSGL-  162 (292)
T ss_pred             cccCHHHHHHHHHHHHH-----------------------------------------cCChhHHHHHHHHHHHHHcCh-
Confidence             3366666666666543                                         111100011222232222211 


Q ss_pred             hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                      .+         .                           ...-+...|+..|.++-...  +.....            .
T Consensus       163 ~~---------~---------------------------~~~~~~~~A~~~~~~aa~~~--~~~a~~------------~  192 (292)
T COG0790         163 QA---------L---------------------------AVAYDDKKALYLYRKAAELG--NPDAQL------------L  192 (292)
T ss_pred             hh---------h---------------------------cccHHHHhHHHHHHHHHHhc--CHHHHH------------H
Confidence            00         0                           00001256777777776655  333433            7


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 040048          504 NGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG---------------QFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       504 lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~  564 (608)
                      +|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|               +...|...+.++....+.
T Consensus       193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         193 LGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            7777754    4588999999999998866  78888888 666666               666677777776665544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.78  E-value=0.014  Score=47.93  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGR-----------LLEAVFECREAIRIEPHYHRAH  335 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~eA~~~~~~al~~~p~~~~~~  335 (608)
                      ++..++..|++-+|+++.+..+...+++.   ..+..-|.++..+..           .-.++++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46788999999999999999999988876   456677888866542           4569999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048          336 HRLANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       336 ~~la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      +.+|.-+-....|++++.-.++++.
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            9999887777788999988888877

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.76  E-value=0.01  Score=57.08  Aligned_cols=74  Identities=24%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      ..+.-..+.|+.++|..+|+.|+.+.|+++.++..+|.+....++.-+|-.+|-+|+.+.|.+.+++.++++..
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            45566678899999999999999999999999999999999999999999999999999999999998877653

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.74  E-value=0.075  Score=54.65  Aligned_cols=155  Identities=14%  Similarity=0.028  Sum_probs=101.1

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC----------------------CCCchhHHHHHHHHHHHHHhHHH
Q 040048          326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP----------------------EADQVDIAKAKSLQAHLNKCTDA  383 (608)
Q Consensus       326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~~~p~~~~~~~~~~~~~~~~~~~  383 (608)
                      ..+|-+.+++..++.++..+|+...|.+.+++++-                      .++-..........+.+......
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            34455555555555555555555555554444421                      01111222334456677777888


Q ss_pred             HHhhcHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHH
Q 040048          384 KRTRDWNTLIQETRAAIAGGAD-SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVN  462 (608)
Q Consensus       384 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~  462 (608)
                      .+.|-|..|++..+-.+.++|. +.-.+...+-...++.++++--+..++.........   +..  ..+...+..+.++
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~--~lPn~a~S~aLA~  188 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLS--LLPNFAFSIALAY  188 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhh--hCccHHHHHHHHH
Confidence            8999999999999999999999 555566666667778888888888777654421110   000  0145666777778


Q ss_pred             HHcCCH---------------HHHHHHHHHHHHhCCCC
Q 040048          463 LACGRF---------------EDALAAIQKAAKQDSNN  485 (608)
Q Consensus       463 ~~~g~~---------------~~A~~~~~~al~~~p~~  485 (608)
                      +..++-               ++|...+.+|+...|.-
T Consensus       189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            888877               89999999999988864

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.69  E-value=0.18  Score=51.93  Aligned_cols=138  Identities=16%  Similarity=0.073  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHHHHHHHH
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQD--------------------------SNNKEVNMVMRKAKGVAAARSNG  505 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~~~~~lg  505 (608)
                      ...++.++.++..+|+++.|.+++++|+-..                          +.|...         ..+++...
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~f---------flal~r~i  110 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQF---------FLALFRYI  110 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHH---------HHHHHHHH
Confidence            6677777777777777777777777765321                          112222         23446777


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C----CHHHHHHHHHHHHH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPY-NSV-LLCNRAACRSKLGQFEKAIEDCNAALNVRP-G----YSKARLRRADCFAK  578 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~a~~~la~~~~~  578 (608)
                      ..+.+.|-+..|+++++-.+.++|. ++. +++.+-....+.++|+--++.++....... +    .+..-+..+.+++.
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~  190 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR  190 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence            8889999999999999999999998 664 444555556678888877887777655211 1    23566788888888


Q ss_pred             cCCH---------------HHHHHHHHHHHHhCCC
Q 040048          579 IEKW---------------EASMQDYEILKKEAPD  598 (608)
Q Consensus       579 ~g~~---------------~~A~~~~~~al~l~P~  598 (608)
                      .++-               ++|.+.+.+|+...|.
T Consensus       191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            8888               8999999999998875

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.68  E-value=1.2  Score=54.68  Aligned_cols=102  Identities=15%  Similarity=0.102  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC----------C-
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR-PG----------Y-  565 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~-  565 (608)
                      .+.|...|++....|+++.|..+.-.|.+..  -+.++...|..+...|+-..|+..+++.++.+ |+          . 
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence            4556699999999999999999999998876  57899999999999999999999999999753 22          1 


Q ss_pred             -----HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH
Q 040048          566 -----SKARLRRADCFAKIEKW--EASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       566 -----~~a~~~la~~~~~~g~~--~~A~~~~~~al~l~P~~~~  601 (608)
                           ..+.+.++......|++  ++-+++|..+.++.|...+
T Consensus      1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred             hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence                 22344555555566664  3556889999999985543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.66  E-value=0.079  Score=43.81  Aligned_cols=93  Identities=15%  Similarity=0.336  Sum_probs=69.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCC---C-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCC
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLD---P-Y--------NSVLLCNRAACRSKLGQFEKAIEDCNAALN-------VRP  563 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~---p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p  563 (608)
                      .-|.-.+..|-|++|...++++++..   | .        ++..+-.|+..+..+|+|++++..-+++|.       ++.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            33455667799999999999998752   2 1        245677899999999999998887777764       455


Q ss_pred             CCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          564 GYSKA----RLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       564 ~~~~a----~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +....    -+..|..+..+|+.++|+..|+++-++
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            55444    468899999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10941 hypothetical protein; Provisional

Probab=96.62  E-value=0.013  Score=57.19  Aligned_cols=71  Identities=18%  Similarity=0.155  Sum_probs=45.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR  572 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  572 (608)
                      .++-.++...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-...
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666554433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.57  E-value=0.0044  Score=40.12  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          569 RLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       569 ~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      |.+||.+|..+|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666644

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.57  E-value=0.0041  Score=39.13  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN  296 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~  296 (608)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.44  E-value=0.013  Score=60.49  Aligned_cols=100  Identities=27%  Similarity=0.346  Sum_probs=86.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL---GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      .-|.--+..+.+..|+..|.+++...|.....+.+.+.++++.   |+.-.|+..+..|+.++|....+|+.|++++..+
T Consensus       379 ~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el  458 (758)
T KOG1310|consen  379 TEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL  458 (758)
T ss_pred             hhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence            3444444556778899999999999999999999999998874   5777899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHH
Q 040048          580 EKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      +++.+|+++...+....|.+...
T Consensus       459 ~r~~eal~~~~alq~~~Ptd~a~  481 (758)
T KOG1310|consen  459 TRYLEALSCHWALQMSFPTDVAR  481 (758)
T ss_pred             hhHHHhhhhHHHHhhcCchhhhh
Confidence            99999999999998889966554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.43  E-value=1.1  Score=44.41  Aligned_cols=227  Identities=11%  Similarity=0.052  Sum_probs=125.0

Q ss_pred             HHcCCHHHHHHHHHHhCCC---CCchhHHHHHHHHHHHHHhHHHHHhh-cHHHHHHHHHHHHHc----CC------C---
Q 040048          343 LRLGEVEKAIYHFKHAGPE---ADQVDIAKAKSLQAHLNKCTDAKRTR-DWNTLIQETRAAIAG----GA------D---  405 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~----~~------~---  405 (608)
                      ...|+++.|..++.++-..   .+|+.  .......+++.|......+ +++.|+..++++.+.    ..      +   
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~--~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDM--AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHH--HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            3456666666666655331   12222  2344556666666666777 788888887777665    11      1   


Q ss_pred             ChHHHHHHHHHHHHHcCChH---HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          406 SAPQIYALQAEALLKLHKHQ---EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD  482 (608)
Q Consensus       406 ~~~~~~~~la~~~~~~g~~~---eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  482 (608)
                      -...++..++.+|...+.++   +|...++.+-...|+.          +.++...-.+....++.+++.+.+.+++...
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~----------~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK----------PEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC----------cHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            11346777888898887765   4555555554444442          5555555555555889999999999998765


Q ss_pred             C-CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHH---HHHHHcC--C------H
Q 040048          483 S-NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRA---ACRSKLG--Q------F  548 (608)
Q Consensus       483 p-~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la---~~~~~~g--~------~  548 (608)
                      + ........+          ..... ........|..++...+..  .|.... |....   .++...+  +      .
T Consensus       152 ~~~e~~~~~~l----------~~i~~-l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i  219 (278)
T PF08631_consen  152 DHSESNFDSIL----------HHIKQ-LAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKI  219 (278)
T ss_pred             ccccchHHHHH----------HHHHH-HHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHH
Confidence            4 222222111          11111 1223345677777666643  222221 22222   1222222  1      2


Q ss_pred             HHHHHHHHHHHhc--CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          549 EKAIEDCNAALNV--RPGYS-------KARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       549 ~~A~~~~~~al~~--~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      +.....+......  .|-..       ...++.|...++.++|++|.++|+-++
T Consensus       220 ~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  220 ESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            2222333322211  12222       345677999999999999999999876

It is also involved in sporulation [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.37  E-value=1.5  Score=45.10  Aligned_cols=68  Identities=6%  Similarity=-0.120  Sum_probs=53.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI  327 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  327 (608)
                      +|.+.-.|+.+-..+-.+|.+++-.+.|++...-.|--+.+|...-.--....+|......|-+++..
T Consensus        38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            47888899999999999999999999999998888877777765555445556777777777777653

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.35  E-value=0.16  Score=51.54  Aligned_cols=145  Identities=8%  Similarity=-0.045  Sum_probs=104.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          259 STRMDPETLKIMGNEDYKAGN------------FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       259 ~~~~~~~~~~~lg~~~~~~g~------------~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      ..|.|.++|..+....-..-.            .+.-+.+|++||+.+|++...+..+-.+.....+.++....+++++.
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            347889999888765443322            46778899999999999999998888888899999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHhCCCCCc-----------hhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048          327 IEPHYHRAHHRLANLYLR---LGEVEKAIYHFKHAGPEADQ-----------VDIAKAKSLQAHLNKCTDAKRTRDWNTL  392 (608)
Q Consensus       327 ~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~p-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A  392 (608)
                      .+|++...|..+-.....   .-.+......|.+++..+..           ........+..++.++......|..+.|
T Consensus        94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A  173 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA  173 (321)
T ss_pred             HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence            999998888765554433   23466666666666541110           0112344566666777777777888888


Q ss_pred             HHHHHHHHHcC
Q 040048          393 IQETRAAIAGG  403 (608)
Q Consensus       393 ~~~~~~al~~~  403 (608)
                      +..++..++.+
T Consensus       174 va~~Qa~lE~n  184 (321)
T PF08424_consen  174 VALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHH
Confidence            88887777764

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.76  Score=45.39  Aligned_cols=283  Identities=11%  Similarity=0.010  Sum_probs=161.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCC--CH
Q 040048          268 KIMGNEDYKAGNFAEALALYDAAISI--DPNK--------ASYRSNKTAALIALGRLLEAVFECREAIR---IEPH--YH  332 (608)
Q Consensus       268 ~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~p~--~~  332 (608)
                      ...+.......++++++..|...+..  .|.+        ......+|..|...|+..+-.......-.   .-+.  ..
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            44556666777788999999888874  1211        24577889999999988765554443322   1111  11


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc----C-CCC
Q 040048          333 RAHHRLANLYLR-LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG----G-ADS  406 (608)
Q Consensus       333 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~-~~~  406 (608)
                      .....+-..+.. -+..+.-+..+...++ -.............-..+...|...++|.+|+......+..    + ...
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIe-WA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l  166 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIE-WAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL  166 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            112222222211 1222333333333332 11111111111223345667788889999998877665532    2 222


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 040048          407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN--  484 (608)
Q Consensus       407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--  484 (608)
                      ..+++..-...|..+.+..+|...+..+-...-.   .+..|.-.+.+-..-|.++..-.+|.-|..+|-++++-...  
T Consensus       167 Lvev~llESK~y~~l~Nl~KakasLTsART~Ana---iYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~  243 (411)
T KOG1463|consen  167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANA---IYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD  243 (411)
T ss_pred             eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc---cccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC
Confidence            3456666778888899998888877665432111   01111112444555667777778999999999999874322  


Q ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHhhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 040048          485 -NKEVNMVMRKAKGVAAARSNGNALFKQAKFSE--AAAAYGDGLGLDPYNSVLLCNRAACRSK--LGQFEKAIEDCNAAL  559 (608)
Q Consensus       485 -~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e--A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al  559 (608)
                       +..+...+       -|..+..+  ..+..++  ++-.-..+++....+..+....|..+..  +.+|+.|+..|..=+
T Consensus       244 ~~v~A~~sL-------KYMlLcKI--Mln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL  314 (411)
T KOG1463|consen  244 DDVKALTSL-------KYMLLCKI--MLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKEL  314 (411)
T ss_pred             CcHHHHHHH-------HHHHHHHH--HhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHH
Confidence             23333322       12233444  4444444  4444556777777778888888888765  567889999888877


Q ss_pred             hcCC
Q 040048          560 NVRP  563 (608)
Q Consensus       560 ~~~p  563 (608)
                      ..+|
T Consensus       315 ~~D~  318 (411)
T KOG1463|consen  315 AEDP  318 (411)
T ss_pred             hcCh
Confidence            7664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.34  E-value=0.34  Score=51.54  Aligned_cols=53  Identities=17%  Similarity=0.085  Sum_probs=38.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      .+..++...++|.+|..+.++.-+.-   +.+|+-.|.-+....+|++|.+.|.+|
T Consensus       778 siVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  778 SLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            44567778899999988877654443   346666777777777888887777665

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.34  E-value=0.01  Score=61.89  Aligned_cols=102  Identities=16%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 040048          463 LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR  542 (608)
Q Consensus       463 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  542 (608)
                      ...|+...|+.++..++...|....+-.           .+++.++.+.|-..+|-.++.+++.+....+..++.+|..+
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~-----------v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~  686 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPL-----------VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAY  686 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccH-----------HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence            4578999999999999998887766543           38999999999999999999999999988899999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                      ..+.+.+.|++.|+.|++++|+++..-..|-.+
T Consensus       687 l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  687 LALKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            999999999999999999999987665444333

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=1.8  Score=45.64  Aligned_cols=151  Identities=11%  Similarity=-0.090  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHcCCH--HHHHHHHHHHHhhCCCCHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAA-------LIALGRL--LEAVFECREAIRIEPHYHR  333 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-------~~~~g~~--~eA~~~~~~al~~~p~~~~  333 (608)
                      .|.....+=.+.-..|+-++++..+-++-...+..+..-..+..+       +...+..  +...+.+.......|+.+.
T Consensus       189 lpp~i~~~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~  268 (546)
T KOG3783|consen  189 LPPKILRLLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGAL  268 (546)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCcc
Confidence            344444444445556777777777766554443333222222222       2223322  4444555555667899998


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048          334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL  413 (608)
Q Consensus       334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  413 (608)
                      .....+.++...|+.+.|+..+...+.     ...+......++.++.......+|.+|...+....+...-+....-+.
T Consensus       269 wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yf  343 (546)
T KOG3783|consen  269 WLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYF  343 (546)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHH
Confidence            999999999999998888888887654     223334455677888888899999999988888777654443333333


Q ss_pred             HHHHH
Q 040048          414 QAEAL  418 (608)
Q Consensus       414 la~~~  418 (608)
                      .|.++
T Consensus       344 a~cc~  348 (546)
T KOG3783|consen  344 AGCCL  348 (546)
T ss_pred             HHHHH
Confidence            34444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.32  E-value=0.013  Score=41.40  Aligned_cols=36  Identities=36%  Similarity=0.524  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048          534 LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       534 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  569 (608)
                      .++.+|..++++|+|++|..+.+.++++.|++..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            344555555555555555555555555555554443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.30  E-value=0.013  Score=56.36  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=62.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      ..|.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.|.++.-
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            44445578899999999999999999999999999999999999999999999999999999998753

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.18  Score=47.86  Aligned_cols=132  Identities=13%  Similarity=0.046  Sum_probs=91.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 040048          461 VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAA  540 (608)
Q Consensus       461 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  540 (608)
                      ++....+-..|+.+...++.++|.+..+|..           ..-.+-....+..+-++++.+.++.+|.+-.+|..+-.
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~y-----------Rr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~  120 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQY-----------RRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV  120 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence            3344555677888888888888888887762           22222223344666777778888888888888887777


Q ss_pred             HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          541 CRSKLGQFE-KAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       541 ~~~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      +....|+.. .-++..+.++..+..+..+|-.+-.+....+.++.-+.+-.+.++.+--|-.+|
T Consensus       121 ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  121 IVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW  184 (318)
T ss_pred             HHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence            777777776 677777788887777777777777777777777777777666666665554444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.26  E-value=1.7  Score=44.74  Aligned_cols=125  Identities=17%  Similarity=0.193  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHh----
Q 040048          452 ANLLVVRAQVNLACGR-FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAA--AYGDG----  524 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~--~~~~a----  524 (608)
                      +..+..-|.-+...|. -++|+..++.+++..+.+.......              ..+-...|.+|+.  .+.+.    
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--------------~~fvKq~Y~qaLs~~~~~rLlkLe  444 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--------------FLFVKQAYKQALSMHAIPRLLKLE  444 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4445556666777777 8899999999999998887654322              1111122222221  11111    


Q ss_pred             --h---cCCC---CCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          525 --L---GLDP---YNSVLLCNRA--ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI  591 (608)
Q Consensus       525 --l---~~~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~  591 (608)
                        +   .+.|   .+.+.-+.|+  ..++..|+|.++.-+..=..++.| .+.++..+|.|++...+|++|..++..
T Consensus       445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence              1   1222   2344444454  456778999999988888888899 789999999999999999999888765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.22  E-value=0.46  Score=45.33  Aligned_cols=124  Identities=12%  Similarity=0.087  Sum_probs=70.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHH
Q 040048          457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY--NSVL  534 (608)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~  534 (608)
                      .+|.+|+..++|.+-...+.+.-.........-..-..-+.++.|..--..|..+.+-..-..+|++++.+...  ++.+
T Consensus       150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI  229 (440)
T KOG1464|consen  150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI  229 (440)
T ss_pred             hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence            47888888888877766666654433221111000011122333445556777778877788889998876432  2222


Q ss_pred             H----HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C--HHHHHHHHHHHHHcC
Q 040048          535 L----CNRAACRSKLGQFEKAIEDCNAALNVRPG-----Y--SKARLRRADCFAKIE  580 (608)
Q Consensus       535 ~----~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~--~~a~~~la~~~~~~g  580 (608)
                      .    -.=|..+.+.|+|++|-..|=.|.+....     -  ..-|..||..+.+.|
T Consensus       230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence            2    22345677888999999888888765321     1  123445555555543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=1  Score=47.38  Aligned_cols=246  Identities=13%  Similarity=-0.026  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          281 AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRLANLYLRLGEVEKAIYHFK  356 (608)
Q Consensus       281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~  356 (608)
                      +...+.+.......|..+......+..+...|+.+.|+..++..+.  +..    .-.++.+|.++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4445555555677899998899999999999998888998888877  322    2356788889999999999999988


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHhHHHHH--------hhcHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048          357 HAGPEADQVDIAKAKSLQAHLNKCTDAKR--------TRDWNTLIQETR---AAIAGGADSAPQIYALQAEALLKLHKHQ  425 (608)
Q Consensus       357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~---~al~~~~~~~~~~~~~la~~~~~~g~~~  425 (608)
                      ....   .   ..|.....-+-.|.+++.        .++-+.+-...+   ..+...|.+.|.          ...-..
T Consensus       328 ~L~d---e---sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~----------E~f~~R  391 (546)
T KOG3783|consen  328 LLRD---E---SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL----------EKFIVR  391 (546)
T ss_pred             HHHh---h---hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch----------hHHHHH
Confidence            8754   1   122222222222222211        112222221111   111111111110          001112


Q ss_pred             HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH---h-CCCChHHHHHHHHHHHHH
Q 040048          426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC--GRFEDALAAIQKAAK---Q-DSNNKEVNMVMRKAKGVA  499 (608)
Q Consensus       426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~---~-~p~~~~~~~~l~~~~~~~  499 (608)
                      ++..+-.+.. ..+...        .+..++.++.++...  ....+.. -++..++   . ++++ +...         
T Consensus       392 Kverf~~~~~-~~~~~~--------la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd-~~lk---------  451 (546)
T KOG3783|consen  392 KVERFVKRGP-LNASIL--------LASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDD-EGLK---------  451 (546)
T ss_pred             HHHHHhcccc-cccccc--------ccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchH-HHHH---------
Confidence            2322222221 111110        011223333333221  1122222 1122221   2 2222 2222         


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGL---DPY----NSVLLCNRAACRSKLGQ-FEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~  565 (608)
                       +..+|.++..+|+...|..+|...++.   ...    .|.+++.+|.+|..+|. ..++.+++.+|-+...++
T Consensus       452 -~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  452 -YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence             247899999999999999999988843   111    36789999999999999 999999999998876553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.16  E-value=0.0083  Score=38.80  Aligned_cols=25  Identities=24%  Similarity=0.554  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAI  291 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al  291 (608)
                      |..+|.++...|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666644

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.13  E-value=0.1  Score=46.22  Aligned_cols=85  Identities=22%  Similarity=0.130  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      ..+..+..+-...++.+++...+...--+.|..+..-..-|.+++..|+|.+|+..++.+..-.|..+.+--.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45677777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHH
Q 040048          345 LGEVE  349 (608)
Q Consensus       345 ~g~~~  349 (608)
                      +|+.+
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            98864

>PRK10941 hypothetical protein; Provisional

Probab=96.13  E-value=0.048  Score=53.36  Aligned_cols=71  Identities=20%  Similarity=0.219  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      ..+.++-.+|...++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++++.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999998763

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.09  E-value=4.2  Score=50.32  Aligned_cols=292  Identities=10%  Similarity=0.039  Sum_probs=157.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          269 IMGNEDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      .+|.+-++.+.|..|+-++++- ...+..    ...+..+=.+|...++++.-.-....- ..+|    .+...-..+..
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~----sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADP----SLYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCc----cHHHHHHHHHh
Confidence            5788888999999999999884 211111    123444444777777777655555431 1122    23333445556


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH  424 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~  424 (608)
                      .|++..|..+|++++. .+|+..      ..+...-......+.+...+...+-.....++.....+..-..+-...++|
T Consensus      1462 ~g~~~da~~Cye~~~q-~~p~~~------~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQ-KDPDKE------KHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred             hccHHHHHHHHHHhhc-CCCccc------cchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence            6777778888888777 666641      112222222333345555555444444444444444444444445666666


Q ss_pred             HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC-----------------------------HHHHHHHH
Q 040048          425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR-----------------------------FEDALAAI  475 (608)
Q Consensus       425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------------------~~~A~~~~  475 (608)
                      +.-..++.   ..+-+.          ..+. .+|.++....+                             |..+.+..
T Consensus      1535 D~~e~~l~---~~n~e~----------w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEY----------WSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred             hhhhhhhh---cccccc----------hhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence            66555543   111100          0110 02333222211                             11111111


Q ss_pred             HHHHH-------------hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC----CCCHHHH
Q 040048          476 QKAAK-------------QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG---LD----PYNSVLL  535 (608)
Q Consensus       476 ~~al~-------------~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~----p~~~~~~  535 (608)
                      -++..             ..+++.....       -.-|.+....-....+..+-+-.+++++-   .+    ...++.|
T Consensus      1601 ~kLH~l~el~~~~~~l~~~s~~~~s~~~-------sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1601 MKLHLLLELENSIEELKKVSYDEDSANN-------SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred             HHHHHHHHHHHHHHHhhccCcccccccc-------chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence            11100             0000000000       00011111111111223344444444432   22    3447899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ...|.+....|+++.|..++-+|.+..  -+.++...|..+...|+-..|+..+++.++++
T Consensus      1674 LqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            999999999999999999999998877  57899999999999999999999999999765

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.57  Score=45.07  Aligned_cols=283  Identities=10%  Similarity=0.076  Sum_probs=152.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHH---Hhh--CCCCHHH
Q 040048          268 KIMGNEDYKAGNFAEALALYDAAISIDP--------NKASYRSNKTAALIALGRLLEAVFECREA---IRI--EPHYHRA  334 (608)
Q Consensus       268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~~~a---l~~--~p~~~~~  334 (608)
                      ..+|+-....+++++|+..|.+.+...-        ........++.+|...|++..--+.....   ..-  .|....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            5578888899999999999999987621        12346788999999999876543333222   221  1222222


Q ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc----C-CCChH
Q 040048          335 HHRLANLY-LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG----G-ADSAP  408 (608)
Q Consensus       335 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~-~~~~~  408 (608)
                      ...|-.-+ .....++.-+..+...++ ..............-..+...+.+.|.|.+|+......+..    + .-...
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~ie-wA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li  165 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIE-WADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI  165 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence            22221111 112334444444444433 11111111222334445667788889999998877665532    1 12223


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS---NN  485 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~  485 (608)
                      .++..-..+|....+..++...+..+-.....   .+..+.-.+.+-..-|.++..-.+|.-|..+|-++++-..   .+
T Consensus       166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans---~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d  242 (421)
T COG5159         166 TVHLLESKVYHEIRNVSKSKASLTAARTLANS---AYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD  242 (421)
T ss_pred             ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc---cCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch
Confidence            56677778888888887777666544322110   0110111244445556667778899999999999987432   33


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHhhc-CCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 040048          486 KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY--GDGLG-LDPYNSVLLCNRAACRS--KLGQFEKAIEDCNAALN  560 (608)
Q Consensus       486 ~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~--~~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~  560 (608)
                      ..+...++       |..+..+..  +..++-...+  ...++ .+.....+....+..+.  .+.+|..|+..|..-+.
T Consensus       243 ~kAc~sLk-------YmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~  313 (421)
T COG5159         243 VKACVSLK-------YMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELH  313 (421)
T ss_pred             HHHHHHHH-------HHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhc
Confidence            33333221       223333332  2233322222  22233 23344556666666553  24577888888877665


Q ss_pred             cCC
Q 040048          561 VRP  563 (608)
Q Consensus       561 ~~p  563 (608)
                      .+|
T Consensus       314 ~D~  316 (421)
T COG5159         314 QDS  316 (421)
T ss_pred             cCH
Confidence            543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.06  E-value=0.28  Score=40.64  Aligned_cols=109  Identities=18%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----
Q 040048          453 NLLVVRA--QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG----  526 (608)
Q Consensus       453 ~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----  526 (608)
                      .+|..|+  .-.+.-|-|++|...+.++++....-+.--..-...-.+..+..|+.++..+|+|++++...++++.    
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            3444443  4456678999999999999986544331100000011233445788899999999998877766664    


Q ss_pred             ---CCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          527 ---LDPYNSVL----LCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       527 ---~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                         ++.+....    .+..|..+..+|+.++|+..|+.+-++
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               55555444    457899999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.02  E-value=0.059  Score=43.16  Aligned_cols=75  Identities=25%  Similarity=0.407  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          283 ALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY--HRAHHRLANLYLRLGEVEKAIYHFKH  357 (608)
Q Consensus       283 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~  357 (608)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++  ..+...+-.++..+|.-+.-...|++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            4566778888888888888888888888888888888888888887765  45556666666666664444444433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.97  E-value=0.031  Score=39.57  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYR  301 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~  301 (608)
                      .++.+|..+++.|+|++|..+.+.+|+.+|++..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            455555555666666666666666666666555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.96  E-value=0.14  Score=45.32  Aligned_cols=83  Identities=14%  Similarity=0.040  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      +..+..+-...++.+++...+...--+.|..+.+-..-|.++...|+|.+|+..|+.+.+..|..+.+.-.++.|+..+|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            34667777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHH
Q 040048          581 KWE  583 (608)
Q Consensus       581 ~~~  583 (608)
                      +.+
T Consensus        93 D~~   95 (160)
T PF09613_consen   93 DPS   95 (160)
T ss_pred             ChH
Confidence            854

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.96  E-value=0.22  Score=47.37  Aligned_cols=203  Identities=11%  Similarity=0.103  Sum_probs=117.7

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH-HHHHHHHHHHHc
Q 040048          276 KAGNFAEALALYDAAISIDPNKAS----YRSNKTAALIALGRLLEAVFECREAIRIE-----PHYHR-AHHRLANLYLRL  345 (608)
Q Consensus       276 ~~g~~~~Al~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~~~-~~~~la~~~~~~  345 (608)
                      ...+.++|+.-|++++++.+...+    ++-.+..+++.+|+|++-...|.+.+..-     .++.+ ....+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            345889999999999999987653    56677888999999999999998877531     12211 111111111111


Q ss_pred             CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC-----C------ChHHHHHHH
Q 040048          346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA-----D------SAPQIYALQ  414 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~------~~~~~~~~l  414 (608)
                      .+.+--.+.|+..+. .-.+......+...-..+|.++...++|....+.+.+.-....     +      ...++|..-
T Consensus       119 ~~m~LLQ~FYeTTL~-ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE  197 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLD-ALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE  197 (440)
T ss_pred             hhhHHHHHHHHHHHH-HHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence            122222222222211 0000000111123344678888888888877777666543211     1      123566777


Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                      ..+|...++-.+-...|++++.+...-+....    -..+.-.-|..+++.|+|++|-..|-+|++...
T Consensus       198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI----mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD  262 (440)
T KOG1464|consen  198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLI----MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD  262 (440)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhhccCCchHH----HhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence            78888888888888888888765432110000    011222335567889999999999988887543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.95  E-value=0.2  Score=50.92  Aligned_cols=153  Identities=9%  Similarity=-0.024  Sum_probs=105.7

Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          285 ALYDAAISIDPNKASYRSNKTAALIALGR------------LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI  352 (608)
Q Consensus       285 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  352 (608)
                      .-|++.+..+|.+..+|..+....-..-.            .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788899999999999988876554422            467788999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHH----hHHHHHhhcHHHHHHHHHHHHHcC---C-------CChHHHHHHHHHHH
Q 040048          353 YHFKHAGPEADQVDIAKAKSLQAHLNK----CTDAKRTRDWNTLIQETRAAIAGG---A-------DSAPQIYALQAEAL  418 (608)
Q Consensus       353 ~~~~~al~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~al~~~---~-------~~~~~~~~~la~~~  418 (608)
                      +.+++++. ..|.+..-+...-.+...    ..+-.-...|.+++..+.......   .       .....++..+...+
T Consensus        86 ~~we~~l~-~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl  164 (321)
T PF08424_consen   86 KKWEELLF-KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL  164 (321)
T ss_pred             HHHHHHHH-HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence            99999998 777764333222111111    112222333444444443333322   0       11134566677888


Q ss_pred             HHcCChHHHHHHhhcCCCCC
Q 040048          419 LKLHKHQEADETLKNGPNFD  438 (608)
Q Consensus       419 ~~~g~~~eA~~~l~~al~~~  438 (608)
                      ...|-.+.|+..++-.++++
T Consensus       165 ~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  165 RQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHCCchHHHHHHHHHHHHHH
Confidence            89999999999999888764

>smart00028 TPR Tetratricopeptide repeats

Probab=95.94  E-value=0.012  Score=36.07  Aligned_cols=31  Identities=16%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          568 ARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      +++.+|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555666666666666666666666665554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.91  E-value=0.011  Score=54.56  Aligned_cols=57  Identities=21%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      .+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344444445555555555555544555555555555555555555555555554443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.86  E-value=0.29  Score=44.88  Aligned_cols=97  Identities=16%  Similarity=0.061  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CH----HH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPH--YH----RA  334 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~----~~  334 (608)
                      ..++..+|..|.+.|++++|+++|.++.+.....   .+.++.+..+.+..+++..+..++.++-.+-..  +.    ..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4578899999999999999999999988865443   456788888999999999999999988765322  22    23


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048          335 HHRLANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       335 ~~~la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      ...-|..++..++|.+|...|-.+..
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCc
Confidence            44567778889999999999988765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.85  E-value=0.075  Score=54.88  Aligned_cols=91  Identities=13%  Similarity=0.004  Sum_probs=77.8

Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 040048          516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK-WEASMQDYEILKK  594 (608)
Q Consensus       516 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~  594 (608)
                      .-...|+.|+...+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            445678888888888899998888888888889999999999999999999999988888777776 8899999999999


Q ss_pred             hCCCCHHHHHHh
Q 040048          595 EAPDDEEVDQAL  606 (608)
Q Consensus       595 l~P~~~~~~~~L  606 (608)
                      .+|+++.+|...
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            999999888654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.83  E-value=0.032  Score=57.72  Aligned_cols=107  Identities=26%  Similarity=0.323  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA---LGRLLEAVFECREAIRIEPHYHRAHHR  337 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~  337 (608)
                      +...+.++.-|+-.+..+....|+..|.+++...|.....+.+++.++++   .|+.-.|+..+..+++++|....+|+.
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            45566777778878888889999999999999999999999999998877   467778999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhCCCCCchhHH
Q 040048          338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIA  368 (608)
Q Consensus       338 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~  368 (608)
                      |+.++..++++.+|+.+...+.. ..|.+..
T Consensus       451 la~aL~el~r~~eal~~~~alq~-~~Ptd~a  480 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQM-SFPTDVA  480 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhh-cCchhhh
Confidence            99999999999999998776665 7776643

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.82  E-value=0.082  Score=43.46  Aligned_cols=92  Identities=11%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYNS---VLLCNRAACRSKLGQ-----------FEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~  569 (608)
                      ++..++..|++-+|+++.+..+...+++.   ..+..-|.++.++..           +-.++++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            45778899999999999999999877665   566677888866543           3468999999999999998888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          570 LRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +.+|.-+....-|+++..--++++.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88888776666777777777777664

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.24  Score=52.34  Aligned_cols=132  Identities=19%  Similarity=0.011  Sum_probs=104.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048          465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK  544 (608)
Q Consensus       465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  544 (608)
                      .+...-++..+...+.+++.++......          .+...+...+....+...+..++..+|++..++.+||.....
T Consensus        44 ~~~~~~~~~a~~~~~~~~~~~~~llla~----------~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~  113 (620)
T COG3914          44 EGLQALAIYALLLGIAINDVNPELLLAA----------FLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL  113 (620)
T ss_pred             cCchhHHHHHHHccCccCCCCHHHHHHH----------HHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH
Confidence            3344446777777777888888875421          256777788888899999999999999999999999999888


Q ss_pred             cCCHHHHHHHHHH-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          545 LGQFEKAIEDCNA-ALNVRPGYSKARLRR------ADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       545 ~g~~~~A~~~~~~-al~~~p~~~~a~~~l------a~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .|....+...+.. +....|++......+      +.....+|+..++....+++.++.|.++++...+
T Consensus       114 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         114 DGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             hhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence            8877666665555 888888887665554      8888899999999999999999999998887665

>smart00028 TPR Tetratricopeptide repeats

Probab=95.63  E-value=0.019  Score=35.11  Aligned_cols=31  Identities=42%  Similarity=0.754  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN  296 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~  296 (608)
                      +++.+|.++...|++++|+.+|+++++.+|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.32  Score=51.72  Aligned_cols=95  Identities=20%  Similarity=0.186  Sum_probs=84.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                      .+-|.-.++..+|..++++|...+...|.+      +.....++.||..+.+.|.|.+++++|-+.+|..+-..+..-.+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            467788899999999999999999876654      45777899999999999999999999999999999888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC
Q 040048          576 FAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       576 ~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ....|+-++|+.+..+.....
T Consensus       438 ~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  438 FLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHhcchHHHHHHHHHHHhhh
Confidence            999999999999988877653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.46  E-value=0.12  Score=41.28  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          517 AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY--SKARLRRADCFAKIEKWEASMQDYEI  591 (608)
Q Consensus       517 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~  591 (608)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++  ..+...+-.++..+|.-+.-...|++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            4567788888999999999999999999999999999999999988775  55666666666666664444444433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.42  E-value=1.5  Score=39.12  Aligned_cols=146  Identities=14%  Similarity=0.063  Sum_probs=85.6

Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK  494 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  494 (608)
                      +.-+...+..++|+..|...-+-.-...        ..-+.+..|.+....|+...|+..|.++-.-.+-. .+..-+.+
T Consensus        65 AL~lA~~~k~d~Alaaf~~lektg~g~Y--------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~AR  135 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKTGYGSY--------PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLAR  135 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCcc--------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHH
Confidence            3334456667777777666544322211        14556677777778888888888887765543322 22211111


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048          495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGL-GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA  573 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la  573 (608)
                             ..-+.++...|-|++-....+..- ..+|-...+...||..-++.|++.+|...|..... +...+....+++
T Consensus       136 -------lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA  207 (221)
T COG4649         136 -------LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA  207 (221)
T ss_pred             -------HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence                   145566777777776655554432 22344455666777777888888888888877766 444455555555


Q ss_pred             HHHH
Q 040048          574 DCFA  577 (608)
Q Consensus       574 ~~~~  577 (608)
                      .+..
T Consensus       208 q~ml  211 (221)
T COG4649         208 QIML  211 (221)
T ss_pred             HHHH
Confidence            5544

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.31  E-value=6.3  Score=44.05  Aligned_cols=128  Identities=14%  Similarity=-0.016  Sum_probs=75.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN  537 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  537 (608)
                      ++.......+.+.|...+.+......-..+....+        ...+|......+...+|...+..+.... .+...+..
T Consensus       247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~  317 (644)
T PRK11619        247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQEL--------RDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLER  317 (644)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHH--------HHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHH
Confidence            34444456677888888876544444333322111        1234444444333567777777655432 23344444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       538 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      ...+....++++.+...+...-....+.....|.+|+.+..+|+.++|..+|+++..
T Consensus       318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            444555778887777777664333334567778888888888888888888888744

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=1.4  Score=46.58  Aligned_cols=101  Identities=16%  Similarity=0.060  Sum_probs=68.4

Q ss_pred             HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHcCChHHHHHHhhcC-----CCCCCccccccc
Q 040048          373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP-QIYALQAEALLKLHKHQEADETLKNG-----PNFDVDETTRFF  446 (608)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~la~~~~~~g~~~eA~~~l~~a-----l~~~p~~~~~~~  446 (608)
                      ..+++.....+.+.|.|..|.+..+-++.++|...| .+.+.+-...++..+|+--++.++..     +...|+      
T Consensus       342 yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN------  415 (665)
T KOG2422|consen  342 YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN------  415 (665)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC------
Confidence            344444555667789999999999999999998444 34444444455666676666655544     233343      


Q ss_pred             CCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 040048          447 GPIGNANLLVVRAQVNLACGR---FEDALAAIQKAAKQDSN  484 (608)
Q Consensus       447 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  484 (608)
                           ...-..+|..|.....   -+.|...+.+|+...|.
T Consensus       416 -----~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  416 -----FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             -----chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence                 3444557777777666   67899999999998885

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.09  E-value=1.2  Score=38.77  Aligned_cols=85  Identities=21%  Similarity=0.124  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ...+......-...++++++...+...--+.|+..+...            .-|.++...|+|.+|+.+|+...+-.+..
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~------------~dg~l~i~rg~w~eA~rvlr~l~~~~~~~   77 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDM------------FDGWLLIARGNYDEAARILRELLSSAGAP   77 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccch------------hHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence            445555666666788999999999888888999888776            67889999999999999999988887777


Q ss_pred             HHHHHHHHHHHHHcCCH
Q 040048          532 SVLLCNRAACRSKLGQF  548 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~  548 (608)
                      +..--.++.|+..+|+.
T Consensus        78 p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        78 PYGKALLALCLNAKGDA   94 (153)
T ss_pred             hHHHHHHHHHHHhcCCh
Confidence            87777888888888874

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.03  E-value=2.2  Score=38.13  Aligned_cols=127  Identities=14%  Similarity=0.044  Sum_probs=95.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SV  533 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~  533 (608)
                      -+.-+...+..++|+..|...-+..-.....+..          ...|.+....|+...|+..|.++-...+--    ..
T Consensus        64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~----------mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~  133 (221)
T COG4649          64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLAR----------MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL  133 (221)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHH----------HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence            3444556788999999998877766665555443          378899999999999999999987764421    23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          534 LLCNRAACRSKLGQFEKAIEDCNAALN-VRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       534 ~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      +...-+.++...|-|++-....+..-. -+|--..+.-.||..-++.|++.+|...|.++..
T Consensus       134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            445567778889999887666554322 2344567778999999999999999999999887

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.01  E-value=0.16  Score=47.98  Aligned_cols=90  Identities=14%  Similarity=0.062  Sum_probs=64.1

Q ss_pred             cCCHHHHHHHHHHhhcC----CC---CCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhcCCC------CHHHHH
Q 040048          511 QAKFSEAAAAYGDGLGL----DP---YNSVLLCNRAACRSKLGQFE-------KAIEDCNAALNVRPG------YSKARL  570 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p~------~~~a~~  570 (608)
                      ...+++|++.|.-|+-.    ..   .-+.++..+|++|..+|+.+       .|++.|+++++....      ...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            44567777776666532    11   22567888999999999844       566666666654321      256788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          571 RRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       571 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      .+|.++.+.|++++|..+|.+++...-.+.
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999998654433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.99  E-value=0.37  Score=44.18  Aligned_cols=97  Identities=9%  Similarity=-0.019  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH----HHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--YS----KARL  570 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~a~~  570 (608)
                      ++..+|..|.+.|++++|++.|.++.+.....   ...++.+..+....+++.....++.++-.+-..  +.    ....
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            45689999999999999999999988875433   467888899999999999999999998776322  22    2334


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          571 RRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       571 ~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      .-|..+...++|.+|.+.|-.+..-.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccCcCC
Confidence            55777888999999999887765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.93  E-value=0.038  Score=51.25  Aligned_cols=61  Identities=20%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048          272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH  332 (608)
Q Consensus       272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  332 (608)
                      ......++.+.|.+.|.+++.+.|++...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456778889999999999999999999999999999999999999999999999998773

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.77  E-value=1.5  Score=46.35  Aligned_cols=130  Identities=18%  Similarity=0.145  Sum_probs=70.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          273 EDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKA  351 (608)
Q Consensus       273 ~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  351 (608)
                      .....+++++++.+.... ++.|.- ......++..+...|..+.|+....        +++..+.|   ..+.|+.+.|
T Consensus       270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~L~~A  337 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGNLDIA  337 (443)
T ss_dssp             HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT-HHHH
T ss_pred             HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCCHHHH
Confidence            344678888877776421 122222 3345566667777777777765432        23444433   4567787877


Q ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHh
Q 040048          352 IYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL  431 (608)
Q Consensus       352 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l  431 (608)
                      .+..++.-.                                               +..|..+|...+..|+++-|..+|
T Consensus       338 ~~~a~~~~~-----------------------------------------------~~~W~~Lg~~AL~~g~~~lAe~c~  370 (443)
T PF04053_consen  338 LEIAKELDD-----------------------------------------------PEKWKQLGDEALRQGNIELAEECY  370 (443)
T ss_dssp             HHHCCCCST-----------------------------------------------HHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred             HHHHHhcCc-----------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            765543211                                               456777788888888888888888


Q ss_pred             hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAA  479 (608)
Q Consensus       432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  479 (608)
                      .++-.                  +..+..+|...|+.+.-.++...+.
T Consensus       371 ~k~~d------------------~~~L~lLy~~~g~~~~L~kl~~~a~  400 (443)
T PF04053_consen  371 QKAKD------------------FSGLLLLYSSTGDREKLSKLAKIAE  400 (443)
T ss_dssp             HHCT-------------------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HhhcC------------------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence            87754                  2235566777777655555554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.75  E-value=0.43  Score=41.53  Aligned_cols=84  Identities=23%  Similarity=0.081  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      .+..........++.+++...+...--+.|+.+.....-|.+++..|+|.+|+..++...+-.+..+.+--.++.|+..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34455555666899999999999988899999999999999999999999999999999988888888888899999999


Q ss_pred             CCHH
Q 040048          346 GEVE  349 (608)
Q Consensus       346 g~~~  349 (608)
                      |+.+
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            8864

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.46  E-value=5.2  Score=46.31  Aligned_cols=84  Identities=13%  Similarity=0.059  Sum_probs=61.3

Q ss_pred             chhHHHHhhhC--C---CCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 040048          250 EPTSLCRALST--R---MDPETLKIMGNEDYKA-------GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA  317 (608)
Q Consensus       250 ~a~~~~~~~~~--~---~~~~~~~~lg~~~~~~-------g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  317 (608)
                      .|...++.+..  |   .--++.+..|...+.+       ..+++|+.-|++ +.-.|.-+--|...|.+|.++|+++|-
T Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (932)
T PRK13184        493 QALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEE  571 (932)
T ss_pred             HHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHH
Confidence            44455555533  2   2356777777766643       257888888877 444566677788999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHH
Q 040048          318 VFECREAIRIEPHYHRA  334 (608)
Q Consensus       318 ~~~~~~al~~~p~~~~~  334 (608)
                      +++|.-+++..|+.+..
T Consensus       572 ~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        572 IKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHHHHHhcCCCCcc
Confidence            99999999999888653

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=94.39  E-value=5.8  Score=39.22  Aligned_cols=30  Identities=20%  Similarity=-0.016  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhcCCCCCC
Q 040048          410 IYALQAEALLKLHKHQEADETLKNGPNFDV  439 (608)
Q Consensus       410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p  439 (608)
                      +...++.+..++|+..+|++.++...+..|
T Consensus       277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence            445567777777777777777777666544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.38  E-value=0.66  Score=43.89  Aligned_cols=91  Identities=12%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHhhcCCC------
Q 040048          466 GRFEDALAAIQKAAKQD---SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS-------EAAAAYGDGLGLDP------  529 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~-------eA~~~~~~al~~~p------  529 (608)
                      ..+++|++.|.-|+-..   .....        ..+..+..+|++|...|+.+       .|+..|+++++...      
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s--------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~  162 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPS--------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM  162 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence            45778888877776421   11111        11223458888888888854       45566666665432      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       530 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                      +...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus       163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            22578889999999999999999999999986433

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.18  E-value=0.32  Score=49.98  Aligned_cols=126  Identities=12%  Similarity=0.076  Sum_probs=102.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 040048          463 LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR  542 (608)
Q Consensus       463 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  542 (608)
                      ...|+.-.|-.-+..++...|..+....            ..+.+...+|+|+.|.+.+..+-..-.....+...+-...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~------------l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~  367 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQ------------LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL  367 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhH------------HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence            4578899999999999999999988765            6788999999999999988766555444445566666778


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      .++|++++|....+-.+.-.-.+++...--|.....+|-+++|..++++.+.++|...
T Consensus       368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            8999999999999888887767777776667777788899999999999999988644

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=4  Score=40.54  Aligned_cols=280  Identities=13%  Similarity=0.083  Sum_probs=162.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHH
Q 040048          302 SNKTAALIALGRLLEAVFECREAIRI--EPHY--------HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK  371 (608)
Q Consensus       302 ~~la~~~~~~g~~~eA~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~  371 (608)
                      ...+.......+.++++..|...+..  .|..        ......++.+|...|+.++-.......-. .- .......
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp-f~-~~v~Kak   85 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRP-FL-SSVSKAK   85 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HH-HHhhhHH
Confidence            44555666677789999999988873  1221        34678899999999998877666554321 00 0011111


Q ss_pred             HHHHHHHHhHHHHHh-hcHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccc
Q 040048          372 SLQAHLNKCTDAKRT-RDWNTLIQETRAAIAGGADSA-----PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRF  445 (608)
Q Consensus       372 ~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~  445 (608)
                      .......+....... +....-+..+...++......     ..+-..+..+|...++|.+|+......+..-..-.+  
T Consensus        86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD--  163 (411)
T KOG1463|consen   86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD--  163 (411)
T ss_pred             HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc--
Confidence            111111111111111 112222333333332211100     123456788999999999998876555432111000  


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          446 FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-----NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAA  520 (608)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~  520 (608)
                        ...-.+++..-...|....+..+|...+..|-.....     ...+..-          ..-|..+....+|.-|..+
T Consensus       164 --K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD----------LqSGIlha~ekDykTafSY  231 (411)
T KOG1463|consen  164 --KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD----------LQSGILHAAEKDYKTAFSY  231 (411)
T ss_pred             --ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH----------HhccceeecccccchHHHH
Confidence              0112566777788888899999988888766543211     1111110          1446777778999999999


Q ss_pred             HHHhhcCCC---CCHH---HHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 040048          521 YGDGLGLDP---YNSV---LLCNRAACRSKLGQFEKAIE--DCNAALNVRPGYSKARLRRADCFAK--IEKWEASMQDYE  590 (608)
Q Consensus       521 ~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~~la~~~~~--~g~~~~A~~~~~  590 (608)
                      |-+|++-..   ++..   .+-.+-.|-..++..++--.  .-+.+++....+.++....|.++.+  +.+|+.|+..|.
T Consensus       232 FyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk  311 (411)
T KOG1463|consen  232 FYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYK  311 (411)
T ss_pred             HHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence            999987522   2222   33344445555666666443  3455666666778888888888754  568899999998


Q ss_pred             HHHHhCC
Q 040048          591 ILKKEAP  597 (608)
Q Consensus       591 ~al~l~P  597 (608)
                      .-+..+|
T Consensus       312 ~eL~~D~  318 (411)
T KOG1463|consen  312 KELAEDP  318 (411)
T ss_pred             HHHhcCh
Confidence            8887766

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.14  E-value=0.73  Score=39.31  Aligned_cols=72  Identities=13%  Similarity=0.106  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          532 SVLLCNRAACRSKLGQ---FEKAIEDCNAALN-VRPGY-SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      ....+++|+++....+   ..+.+.+++..++ -.|.. -+..+.||..+.+.++|++|+.+....++..|+|.++.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            3444555555554332   3445555555554 22322 33445555566666666666666666666666665543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.05  E-value=0.41  Score=51.03  Aligned_cols=95  Identities=14%  Similarity=0.146  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNK------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      .+.+-|.-+++..+|..++++|...+..-|.+      +.....++.||..+.+.+.|++++++|-+.+|.++-....+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34566778899999999999999999877665      445788999999999999999999999999999998888888


Q ss_pred             HHHHHcCCHHHHHHHHHHhCC
Q 040048          340 NLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~  360 (608)
                      .+...-|.-++|+.+......
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHh
Confidence            888999999999998877654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.82  E-value=0.69  Score=39.46  Aligned_cols=76  Identities=18%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHhhc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          502 RSNGNALFKQAK---FSEAAAAYGDGLG-LDPY-NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       502 ~~lg~~~~~~g~---~~eA~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      +++++++....+   ..+.+.+++..++ -.|. .-+..+.||..++++|+|++++.+.+..++..|++..+.-..-.+.
T Consensus        36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie  115 (149)
T KOG3364|consen   36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE  115 (149)
T ss_pred             HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            477888876554   5678999999996 4443 3578889999999999999999999999999999988765544444


Q ss_pred             H
Q 040048          577 A  577 (608)
Q Consensus       577 ~  577 (608)
                      .
T Consensus       116 d  116 (149)
T KOG3364|consen  116 D  116 (149)
T ss_pred             H
Confidence            3

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.75  E-value=8.5  Score=41.54  Aligned_cols=45  Identities=9%  Similarity=0.211  Sum_probs=27.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          545 LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                      .++|++|....++.-+.-   +++|+-.|+.+....++++|-+.|.+|
T Consensus       786 ~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  786 TQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             cccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            344555544443322222   356777777777777888887777665

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=4.3  Score=43.16  Aligned_cols=138  Identities=17%  Similarity=0.140  Sum_probs=96.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h----------------CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAK-----Q----------------DSNNKEVNMVMRKAKGVAAARSNGNALF  509 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~----------------~p~~~~~~~~l~~~~~~~~~~~lg~~~~  509 (608)
                      +...++.++.+...+|+.+-|....+++|-     .                .|.+...+.         +++..-..+.
T Consensus       283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL---------~l~r~m~~l~  353 (665)
T KOG2422|consen  283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYL---------ALFRYMQSLA  353 (665)
T ss_pred             chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHH---------HHHHHHHHHH
Confidence            588999999999999999998888888764     1                122222222         2344456677


Q ss_pred             HcCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC-
Q 040048          510 KQAKFSEAAAAYGDGLGLDPY-NSVLLCNRAACRS-KLGQFEKAIEDCNAA-----LNVRPGYSKARLRRADCFAKIEK-  581 (608)
Q Consensus       510 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a-----l~~~p~~~~a~~~la~~~~~~g~-  581 (608)
                      +.|-|..|.++++-.+.++|. ++.+...+..+|. +..+|.=-++.++..     +..-|+.. .-..+|..|..... 
T Consensus       354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~  432 (665)
T KOG2422|consen  354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEE  432 (665)
T ss_pred             hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCCh
Confidence            889999999999999999998 7766555555543 455565555555544     33445543 22456666666655 


Q ss_pred             --HHHHHHHHHHHHHhCCC
Q 040048          582 --WEASMQDYEILKKEAPD  598 (608)
Q Consensus       582 --~~~A~~~~~~al~l~P~  598 (608)
                        .+.|...+.+|+.+.|.
T Consensus       433 ~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  433 DDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hhHHHHHHHHHHHHHhCcH
Confidence              67899999999999883

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.55  E-value=0.51  Score=47.85  Aligned_cols=89  Identities=21%  Similarity=0.479  Sum_probs=67.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048          505 GNALFKQAKFSEAAAAYGDGLGLD--------PY-----N-----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       505 g~~~~~~g~~~eA~~~~~~al~~~--------p~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  566 (608)
                      |..++++++|..|..-|..++++.        |.     +     ..+-..+..||+++++.+-|+....+.|-++|.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            444555555555555555555431        11     1     12345789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      .-+++.|.|+..+.+|.+|..-+--+.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987665543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.50  E-value=0.16  Score=33.52  Aligned_cols=29  Identities=31%  Similarity=0.378  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                      .++.++|.+|...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34556666666666666666666666554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.46  E-value=0.16  Score=33.54  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISI  293 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~  293 (608)
                      .++..+|.++...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34555666666666666666666665543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.35  E-value=8.9  Score=39.14  Aligned_cols=203  Identities=13%  Similarity=-0.010  Sum_probs=128.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-CC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C--CC-CH
Q 040048          268 KIMGNEDYKAGNFAEALALYDAAISID-PN--------KASYRSNKTAALIALGRLLEAVFECREAIRI---E--PH-YH  332 (608)
Q Consensus       268 ~~lg~~~~~~g~~~~Al~~~~~al~~~-p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~--p~-~~  332 (608)
                      +.....++.+.++.+|..+-+..+..- -.        .+..|+.+..+|...|+...-...+...+..   .  .. ..
T Consensus       130 lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qa  209 (493)
T KOG2581|consen  130 LLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQA  209 (493)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHH
Confidence            334445556799999998887766431 11        2456888888999999977766666655542   1  11 13


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH----
Q 040048          333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP----  408 (608)
Q Consensus       333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----  408 (608)
                      .....|-..|...+.|+.|-+...+.   ..|+...........+.+|.+..-..+|..|.+++..++...|....    
T Consensus       210 vLiN~LLr~yL~n~lydqa~~lvsK~---~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~  286 (493)
T KOG2581|consen  210 VLINLLLRNYLHNKLYDQADKLVSKS---VYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR  286 (493)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcc---cCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH
Confidence            45566778888999999999988887   44555445567788888999999999999999999999999886432    


Q ss_pred             -HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          409 -QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ--VNLACGRFEDALAAIQKAAKQDSNN  485 (608)
Q Consensus       409 -~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~p~~  485 (608)
                       .+...+..+-.-+|++.+-.-.-+..++.             ....|+.+..  -.....+|.+-++-|..-+..+...
T Consensus       287 q~v~k~~ivv~ll~geiPers~F~Qp~~~k-------------sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty  353 (493)
T KOG2581|consen  287 QQVNKLMIVVELLLGEIPERSVFRQPGMRK-------------SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY  353 (493)
T ss_pred             HHHHHHHHHHHHHcCCCcchhhhcCccHHH-------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc
Confidence             12222333334456554432222221111             1333444333  3344555667777776666665544


Q ss_pred             h
Q 040048          486 K  486 (608)
Q Consensus       486 ~  486 (608)
                      .
T Consensus       354 ~  354 (493)
T KOG2581|consen  354 T  354 (493)
T ss_pred             h
Confidence            3

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.30  E-value=12  Score=39.05  Aligned_cols=103  Identities=16%  Similarity=0.038  Sum_probs=65.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      +.+|......+.+....|+|+.|...+.-+-..-..-..+...+-..+..+|++++|....+-.+.-.-+++++...-+.
T Consensus       320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~  399 (831)
T PRK15180        320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG  399 (831)
T ss_pred             CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence            57788888888888888999988887766554433333344444455556677777776666666544445554444444


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCc
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQ  364 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p  364 (608)
                      .-..+|-++++...+++.+. ++|
T Consensus       400 sa~~l~~~d~~~~~wk~~~~-~~~  422 (831)
T PRK15180        400 SADALQLFDKSYHYWKRVLL-LNP  422 (831)
T ss_pred             cHHHHhHHHHHHHHHHHHhc-cCC
Confidence            45556666777777766665 444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.21  E-value=3.2  Score=44.25  Aligned_cols=133  Identities=17%  Similarity=0.034  Sum_probs=94.4

Q ss_pred             hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVV--RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      -.-++..+...+.+++.+          ..++..  +...+...+....+...+..++..+|++.....           
T Consensus        47 ~~~~~~a~~~~~~~~~~~----------~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------  105 (620)
T COG3914          47 QALAIYALLLGIAINDVN----------PELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQ-----------  105 (620)
T ss_pred             hhHHHHHHHccCccCCCC----------HHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHH-----------
Confidence            333566666666666653          333222  466677788888899999999999999988876           


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH-hhcCCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGD-GLGLDPYNSVLLCNR------AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD  574 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~  574 (608)
                       ++|......|....++..+.. +....|.+......+      +.....+|+..++....+++..+.|.++.+...+..
T Consensus       106 -~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         106 -NLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             -HHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence             666666666666666555544 777888877665555      888888889999999999999998888766555444


Q ss_pred             HHHH
Q 040048          575 CFAK  578 (608)
Q Consensus       575 ~~~~  578 (608)
                      ...+
T Consensus       185 ~r~~  188 (620)
T COG3914         185 ARQE  188 (620)
T ss_pred             HHHH
Confidence            4333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.18  E-value=3  Score=46.22  Aligned_cols=119  Identities=12%  Similarity=0.124  Sum_probs=76.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhH
Q 040048          303 NKTAALIALGRLLEAVFECREAIRIEPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT  381 (608)
Q Consensus       303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~  381 (608)
                      ..-.++.+...|+-|+...+.- .++++. ...+...|.-++..|++++|...|.+.+..++|...-.            
T Consensus       339 ~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~------------  405 (933)
T KOG2114|consen  339 TKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK------------  405 (933)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH------------
Confidence            3345566777788887766543 333433 45788889999999999999999999998778776311            


Q ss_pred             HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048          382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP  435 (608)
Q Consensus       382 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al  435 (608)
                      .+.......+...+++...+.+-... .-...+-.+|.++++.++-.+..++.-
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            11222333444445555555444332 334556678888888877766666554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.94  E-value=0.58  Score=47.44  Aligned_cols=89  Identities=19%  Similarity=0.272  Sum_probs=72.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC--------C----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPN--------K----------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY  331 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~--------~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  331 (608)
                      -|..++++++|..|..-|..+|++..+        .          ..+--.+..||..+++.+-|+....+.|.++|.+
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            355677888888888888888876422        1          1234578899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048          332 HRAHHRLANLYLRLGEVEKAIYHFKHA  358 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~~~~A~~~~~~a  358 (608)
                      ..-+...|.|+..+.+|.+|...+.-+
T Consensus       262 frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998766543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.60  E-value=0.2  Score=48.63  Aligned_cols=85  Identities=11%  Similarity=-0.090  Sum_probs=63.0

Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          521 YGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR-RADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       521 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      |.++-...+.++..|...+....+.|-|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.++++++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            344445567777777777777777777778888888888888888887765 4455677788888888888888888888


Q ss_pred             HHHHHH
Q 040048          600 EEVDQA  605 (608)
Q Consensus       600 ~~~~~~  605 (608)
                      +.+|..
T Consensus       176 p~iw~e  181 (435)
T COG5191         176 PRIWIE  181 (435)
T ss_pred             chHHHH
Confidence            877754

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.29  E-value=17  Score=38.34  Aligned_cols=216  Identities=11%  Similarity=-0.056  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      .+..+-..+...-.+.-..-.+.+.+... .+-.+++.++.||... ..++-...+++.++.+=++...-..|+..|.. 
T Consensus        68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-  144 (711)
T COG1747          68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-  144 (711)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence            33333333434444444444555555544 3345666777777666 44555666677777666666666666666655 


Q ss_pred             CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048          346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ  425 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~  425 (608)
                      ++...+..+|.+++...-|..                     +...-.+..++..+.-+++....+..+-.+-..+|.- 
T Consensus       145 ik~sk~a~~f~Ka~yrfI~~~---------------------q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~-  202 (711)
T COG1747         145 IKKSKAAEFFGKALYRFIPRR---------------------QNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEG-  202 (711)
T ss_pred             hchhhHHHHHHHHHHHhcchh---------------------hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccc-
Confidence            666667777766643111110                     0011112233333333333333333332222222210 


Q ss_pred             HHHHHhhcCCCCCCcccccccCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH--------HHH
Q 040048          426 EADETLKNGPNFDVDETTRFFGPIGNANLL-VVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR--------KAK  496 (608)
Q Consensus       426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--------~~~  496 (608)
                                               ...++ ..+-.-|....++.+|+..+...++.+..+..+...+-        ...
T Consensus       203 -------------------------~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~  257 (711)
T COG1747         203 -------------------------RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHS  257 (711)
T ss_pred             -------------------------hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccch
Confidence                                     12222 22234455677888888888888888777765543221        112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      .++.|....++-..-.++.+++.-|++.+..+..+
T Consensus       258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             hHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence            24444455555556678889999999988776654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.21  E-value=7.9  Score=41.08  Aligned_cols=135  Identities=20%  Similarity=0.109  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      .+....++..+..+|..+.|+.+-        .++...+.|   ..+.|+++.|.+..++     .+++..|..||...+
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL  358 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEAL  358 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHH
Confidence            344566777777888888877643        234454444   4578999999876543     346789999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK  423 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~  423 (608)
                      ..|+++-|.++|.++-.               +-.+..+|...|+-+...+....+...+.      +...-.+++.+|+
T Consensus       359 ~~g~~~lAe~c~~k~~d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd  417 (443)
T PF04053_consen  359 RQGNIELAEECYQKAKD---------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGD  417 (443)
T ss_dssp             HTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-
T ss_pred             HcCCHHHHHHHHHhhcC---------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCC
Confidence            99999999999999744               23344455555665555555444443321      2223345566677


Q ss_pred             hHHHHHHhhcCC
Q 040048          424 HQEADETLKNGP  435 (608)
Q Consensus       424 ~~eA~~~l~~al  435 (608)
                      .++.++.+.+.-
T Consensus       418 ~~~cv~lL~~~~  429 (443)
T PF04053_consen  418 VEECVDLLIETG  429 (443)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC
Confidence            777766665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.00  E-value=0.68  Score=44.72  Aligned_cols=71  Identities=23%  Similarity=0.266  Sum_probs=48.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA  573 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la  573 (608)
                      ++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.+...++..|+.+.+-...+
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            44455666677777777777777777777777777777777777777777777777777777665544433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=91.96  E-value=0.19  Score=49.79  Aligned_cols=105  Identities=26%  Similarity=0.362  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDP-------------------YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP  563 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  563 (608)
                      ..|...++.++|+.|..-|.+++..-.                   .-...+.+++.+-.+.+.+..|+.....++..++
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~  306 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER  306 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence            445666777777777777776654211                   1123556788999999999999999999999889


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          564 GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       564 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +...+++.++..+....++++|++.++.+....|++..+...+.
T Consensus       307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~  350 (372)
T KOG0546|consen  307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE  350 (372)
T ss_pred             hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999887663

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.90  E-value=0.51  Score=30.35  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 040048          265 ETLKIMGNEDYKAGNFAEALAL--YDAAISIDPN  296 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~--~~~al~~~p~  296 (608)
                      +.|+.+|..++.+|++++|+..  |.-+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4566677777777777777777  3355555544

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.89  E-value=0.55  Score=45.76  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=70.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSN-KTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      +.|+..|...+......|-|.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.+++.++|+.+..|...-
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf  183 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence            5789999999988889999999999999999999999999977 556677889999999999999999999998876543

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=91.53  E-value=27  Score=39.08  Aligned_cols=72  Identities=10%  Similarity=-0.092  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRS-KLGQFEKAIEDCNAALNVRPGYSKARLR  571 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~  571 (608)
                      .|...-......|....-...+++++...+.+...|...+...- .++-.+.+...+-+++...|-....|-.
T Consensus       314 ~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~r  386 (881)
T KOG0128|consen  314 EWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKR  386 (881)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHH
Confidence            34444555566677777777777777777766777666654432 2444455666666677766665555433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.51  E-value=0.69  Score=29.75  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 040048          567 KARLRRADCFAKIEKWEASMQD--YEILKKEAPDD  599 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~--~~~al~l~P~~  599 (608)
                      +.++.+|-.+..+|++++|++.  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3455666666666666666666  33555555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=91.39  E-value=1.1  Score=52.02  Aligned_cols=173  Identities=18%  Similarity=0.130  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALA------LYDAA-ISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-------  327 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------  327 (608)
                      .++.-....|......|.+.+|.+      ++... -.+.|.....+..++.++..+|++++|+....++.-+       
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            345567778888888899988888      55532 3457888889999999999999999999999887654       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC----CCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048          328 -EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE----ADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG  402 (608)
Q Consensus       328 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  402 (608)
                       .|+....+..++...+..++...|+..+.++...    ..+   ..+.......++..++...++++.|+...+.++..
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge---~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE---DHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC---CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence             2445678888998888888888888888776541    112   12223444556666677888999999999988874


Q ss_pred             C-----CC--ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048          403 G-----AD--SAPQIYALQAEALLKLHKHQEADETLKNGPNF  437 (608)
Q Consensus       403 ~-----~~--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  437 (608)
                      .     |.  .....+..+++.+..++++..|....+....+
T Consensus      1087 ~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1087 NKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            2     22  12345677788888888888877776665543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.14  E-value=23  Score=37.47  Aligned_cols=60  Identities=13%  Similarity=0.050  Sum_probs=45.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCC
Q 040048          505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--------------------LGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~  564 (608)
                      -.-|....+|.+|++.+...++.+..+.++.-++...+..                    -.++-+++..|++.+..+..
T Consensus       212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG  291 (711)
T COG1747         212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG  291 (711)
T ss_pred             HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence            3556677899999999999999988888777766665554                    45677888888888776543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.09  E-value=2.6  Score=48.63  Aligned_cols=135  Identities=16%  Similarity=0.132  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHhhcCCC
Q 040048          457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-------AKFSEAAAAYGDGLGLDP  529 (608)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-------g~~~eA~~~~~~al~~~p  529 (608)
                      ...+++...+.|+.|+..|+++-.-.|+..+.+.         +.+..|..+..+       ..+++|+..|++.-. .|
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  549 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYE---------AQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GV  549 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchH---------HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CC
Confidence            3456778888999999999999999998776654         224556555432       257788888877644 35


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHH
Q 040048          530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI-----EKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       530 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      .-+.-|...|.+|..+|+|++-+++|.-|++..|.++..-...-.+-.++     .....|....--++.+.|....
T Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (932)
T PRK13184        550 GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS  626 (932)
T ss_pred             CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            66777889999999999999999999999999998875443332222222     2345666777777777776543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.08  E-value=0.98  Score=36.46  Aligned_cols=54  Identities=24%  Similarity=0.270  Sum_probs=33.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCC---------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048          274 DYKAGNFAEALALYDAAISIDPNK---------ASYRSNKTAALIALGRLLEAVFECREAIRI  327 (608)
Q Consensus       274 ~~~~g~~~~Al~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~  327 (608)
                      ....|+|.+|++.+.+.++.....         ..+..++|.++...|++++|+..+++++.+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456677777777776666543221         234555666666666666666666666654

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.92  E-value=12  Score=36.76  Aligned_cols=94  Identities=19%  Similarity=0.089  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHHcCCHH-HHHHHHHHHHhh------CCCCH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISI-----DPNKASYRSNKTAALIALGRLL-EAVFECREAIRI------EPHYH  332 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~-eA~~~~~~al~~------~p~~~  332 (608)
                      +.++.=+..+++.|++.-|.++..-.++.     .+.+.....+++.++...+.-+ +-..+.+++++-      .-.++
T Consensus        11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp   90 (260)
T PF04190_consen   11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP   90 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred             HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence            45666677888888888887766555543     3344455567777777665432 233334444432      22458


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048          333 RAHHRLANLYLRLGEVEKAIYHFKHA  358 (608)
Q Consensus       333 ~~~~~la~~~~~~g~~~~A~~~~~~a  358 (608)
                      ..|..+|..|++.|++.+|..+|-..
T Consensus        91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~  116 (260)
T PF04190_consen   91 ELHHLLAEKLWKEGNYYEAERHFLLG  116 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhc
Confidence            89999999999999999999998543

; PDB: 3LKU_E 2WPV_G.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.86  E-value=1.5  Score=42.37  Aligned_cols=70  Identities=21%  Similarity=0.258  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      ....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++.++..++..|+++.+
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            3455666778889999999999999999999999999999999999999999999999999999998875

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.86  E-value=1.2  Score=51.72  Aligned_cols=173  Identities=16%  Similarity=0.079  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS-----NN  485 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~  485 (608)
                      ....+......+.+.+|.+ +.+++....+-....  .......+..++.++...+++++|+..-.++.-+..     +.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~--h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVL--HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhc--chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            3345666666777777777 444333221100000  012378889999999999999999998887754322     12


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          486 KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--------DPYNSVLLCNRAACRSKLGQFEKAIEDCNA  557 (608)
Q Consensus       486 ~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  557 (608)
                      +..         ...+.+++...+..++...|+..+.++..+        .|.-+....+++.++...++++.|+.+.+.
T Consensus      1012 ~~t---------~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1012 PNT---------KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred             HHH---------HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence            221         223457888888888999999998888764        455566778899999999999999999999


Q ss_pred             HHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          558 ALNVRPG--------YSKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       558 al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      |+.....        ....+..+++++..++++..|....+....+
T Consensus      1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            9986422        3456677788888888888887777766654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.82  E-value=1.2  Score=35.96  Aligned_cols=54  Identities=17%  Similarity=0.245  Sum_probs=33.1

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          543 SKLGQFEKAIEDCNAALNVRPG---------YSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       543 ~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      .+.|+|.+|++.+.+.++....         ...+..++|.++...|++++|+..+++++++.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4556666666666555553211         13455667777777777777777777777654

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.78  E-value=6.6  Score=38.11  Aligned_cols=209  Identities=12%  Similarity=0.047  Sum_probs=124.6

Q ss_pred             HHHhHHHHHhhcHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048          377 LNKCTDAKRTRDWNTLIQETRAAIAGGAD-------SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI  449 (608)
Q Consensus       377 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~  449 (608)
                      +.++.-..+.+++++|+..|.+.+..+..       ........++.+|...|++..--+.....-+...+..     ..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-----k~   81 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-----KP   81 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-----ch
Confidence            34455566778999999999999987432       2235677789999999988655443332211100000     00


Q ss_pred             CcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-
Q 040048          450 GNANLLVVRAQVN-LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-  527 (608)
Q Consensus       450 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-  527 (608)
                      ....+...+-.-+ .....++.-+..+...++..........      ....-..+..++++.|+|.+|+......+.. 
T Consensus        82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL------r~~Le~Kli~l~y~~~~YsdalalIn~ll~El  155 (421)
T COG5159          82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL------RLELECKLIYLLYKTGKYSDALALINPLLHEL  155 (421)
T ss_pred             hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            0011111111111 1233455555555555543222211111      1112236788999999999999988776542 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          528 -----DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYSKA--RLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       528 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a--~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                           .+.-..++..-..+|....+..++...+..|-..     .|....+  -..-|.......+|.-|..+|-.+++-
T Consensus       156 Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         156 KKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence                 3445677888888999999998888888776554     2332222  234466667778899999999888874


Q ss_pred             C
Q 040048          596 A  596 (608)
Q Consensus       596 ~  596 (608)
                      .
T Consensus       236 f  236 (421)
T COG5159         236 F  236 (421)
T ss_pred             c
Confidence            3

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=90.56  E-value=22  Score=36.38  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048          408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK  486 (608)
Q Consensus       408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  486 (608)
                      ..+.+.+-+.|+..+.|+.|.....+..--......      .-+..++.+|.+..-+++|..|.+++-.|+...|.+.
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snn------e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNN------EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccH------HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            455666778888889999999988877632221111      1277888999999999999999999999999999844

>PRK11619 lytic murein transglycosylase; Provisional

Probab=90.56  E-value=33  Score=38.40  Aligned_cols=183  Identities=11%  Similarity=-0.006  Sum_probs=105.5

Q ss_pred             HhhcHHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHH
Q 040048          385 RTRDWNTLIQETRAAIAGGADS---APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQV  461 (608)
Q Consensus       385 ~~~~~~~A~~~~~~al~~~~~~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~  461 (608)
                      ...+.+.|...+.+......-.   ...++..+|.-....+...+|...+..+.....+           ...+-....+
T Consensus       253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~-----------~~~~e~r~r~  321 (644)
T PRK11619        253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQS-----------TSLLERRVRM  321 (644)
T ss_pred             HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCC-----------cHHHHHHHHH
Confidence            3445566666666543332211   1223334443333333366777777765543222           2333344445


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------------
Q 040048          462 NLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-------------  528 (608)
Q Consensus       462 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------------  528 (608)
                      ....++++.+..++...-.........            .+-+|..+...|+.++|..+|+++....             
T Consensus       322 Al~~~dw~~~~~~i~~L~~~~~~~~rw------------~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~  389 (644)
T PRK11619        322 ALGTGDRRGLNTWLARLPMEAKEKDEW------------RYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGE  389 (644)
T ss_pred             HHHccCHHHHHHHHHhcCHhhccCHhh------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCC
Confidence            557777777666666542222222222            2467788777888888888887764310             


Q ss_pred             ------C---CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          529 ------P---YN-----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       529 ------p---~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                            +   ..     .......+..+...|+...|...+..++..  .+......++.+....|.++.|+....++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~  465 (644)
T PRK11619        390 EYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG  465 (644)
T ss_pred             CCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence                  0   00     012245567778888999998888887774  34566777888888888888887665543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=90.44  E-value=26  Score=36.97  Aligned_cols=87  Identities=13%  Similarity=0.079  Sum_probs=74.1

Q ss_pred             hHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 040048          252 TSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR-LLEAVFECREAIRIE  328 (608)
Q Consensus       252 ~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~  328 (608)
                      ..+++....  +.|+..|........+.+.+.+--..|.+++..+|+++..|..-|.-.+.-+. .+.|...+.++++.+
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            344555544  46889999998888888889999999999999999999999999988888776 899999999999999


Q ss_pred             CCCHHHHHHH
Q 040048          329 PHYHRAHHRL  338 (608)
Q Consensus       329 p~~~~~~~~l  338 (608)
                      |+.+..|...
T Consensus       171 pdsp~Lw~ey  180 (568)
T KOG2396|consen  171 PDSPKLWKEY  180 (568)
T ss_pred             CCChHHHHHH
Confidence            9998876543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.26  E-value=6.7  Score=36.31  Aligned_cols=76  Identities=17%  Similarity=0.051  Sum_probs=60.3

Q ss_pred             cCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHH
Q 040048          511 QAKFSEAAAAYGDGLGLD-PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG----YSKARLRRADCFAKIEKWEAS  585 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A  585 (608)
                      .-.-++|...|-++-... -++++..+.+|..|. ..+.++|+..+.+++++.+.    +++++..|+.++.++|+++.|
T Consensus       119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            334467887777665432 266899999998887 56789999999999998644    489999999999999999998


Q ss_pred             HH
Q 040048          586 MQ  587 (608)
Q Consensus       586 ~~  587 (608)
                      .-
T Consensus       198 Yi  199 (203)
T PF11207_consen  198 YI  199 (203)
T ss_pred             hh
Confidence            53

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.19  E-value=0.54  Score=30.66  Aligned_cols=29  Identities=17%  Similarity=0.149  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +++..||.+-...++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35666777777777777777777777664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.94  E-value=2.5  Score=32.47  Aligned_cols=60  Identities=13%  Similarity=0.093  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYR---SNKTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      ....|.-++...+.++|+..++++++..++...-+   -.+..+|...|+|.+++.+..+=++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777777777766654433   3344556667777776666554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.83  E-value=1.9  Score=42.27  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                      +.++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            5566778888888888888888888888888888888888888888888888888888877664

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.78  E-value=2.3  Score=41.71  Aligned_cols=78  Identities=24%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048          280 FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG  359 (608)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  359 (608)
                      |..=+...+++++.  ....++..++..+...|+++.++..+++.+..+|.+..+|..+-..|...|+...|+..|+++-
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            44444444444442  2356788889999999999999999999999999999999999999999999999999998763

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=89.77  E-value=21  Score=34.92  Aligned_cols=139  Identities=15%  Similarity=0.129  Sum_probs=64.5

Q ss_pred             CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          404 ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       404 ~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                      +.-.+.++..+|..+.+.+++.+|..+|-..-.  ++           ..++..+-...               ..+-.|
T Consensus        86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~--~~-----------~~~~~~ll~~~---------------~~~~~~  137 (260)
T PF04190_consen   86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD--PS-----------AFAYVMLLEEW---------------STKGYP  137 (260)
T ss_dssp             TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H--HH-----------HHHHHHHHHHH---------------HHHTSS
T ss_pred             CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC--hh-----------HHHHHHHHHHH---------------HHhcCC
Confidence            334477888888888888888877776644421  00           11111111111               122233


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CC-----------CCHHHHH-HHHHHHHHcCC
Q 040048          484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----DP-----------YNSVLLC-NRAACRSKLGQ  547 (608)
Q Consensus       484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p-----------~~~~~~~-~la~~~~~~g~  547 (608)
                      ...+.+.           ......|...++...|...+..-++.    +|           ..+.+.+ .+-..-.+.++
T Consensus       138 ~e~dlfi-----------~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~  206 (260)
T PF04190_consen  138 SEADLFI-----------ARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN  206 (260)
T ss_dssp             --HHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred             cchhHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Confidence            3333332           13335567778888888766555543    22           2232211 11111223333


Q ss_pred             ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          548 ---FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       548 ---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                         |..-.+.|+..|+.+|........+|..|+....
T Consensus       207 ~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~  243 (260)
T PF04190_consen  207 LPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP  243 (260)
T ss_dssp             HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred             HHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence               2333344444555667778888899999987543

; PDB: 3LKU_E 2WPV_G.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.64  E-value=0.55  Score=30.61  Aligned_cols=29  Identities=24%  Similarity=0.546  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISI  293 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~  293 (608)
                      +++..+|.+.+..++|++|+.-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35566666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.37  E-value=15  Score=37.70  Aligned_cols=169  Identities=13%  Similarity=-0.002  Sum_probs=106.6

Q ss_pred             HhhcH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHH-----------HcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048          385 RTRDW-NTLIQETRAAIAGGADSAPQIYALQAEALL-----------KLHKHQEADETLKNGPNFDVDETTRFFGPIGNA  452 (608)
Q Consensus       385 ~~~~~-~~A~~~~~~al~~~~~~~~~~~~~la~~~~-----------~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~  452 (608)
                      ..+.+ ..+++.-.+.++.+|+.....-+....+..           ...-+++-+.+...+++.+|+.          .
T Consensus        40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npks----------Y  109 (421)
T KOG0529|consen   40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKS----------Y  109 (421)
T ss_pred             hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchh----------H
Confidence            33444 345556666666777654322222222221           2224566677778888888885          6


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048          453 NLLVVRAQVNLACGR--FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       453 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  530 (608)
                      .+|..+..++.+.+.  +..-+.+++++++.+|.+..+|..-+.        ..+.+-.......+=+++..++|..++.
T Consensus       110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf--------V~~~~~~~~~~~~~El~ftt~~I~~nfS  181 (421)
T KOG0529|consen  110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF--------VVEQAERSRNLEKEELEFTTKLINDNFS  181 (421)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH--------HHHHHhcccccchhHHHHHHHHHhccch
Confidence            778888888877654  578888888999999888887753211        2222222333466777888888888888


Q ss_pred             CHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCCHHHHHH
Q 040048          531 NSVLLCNRAACRSK------LGQ------FEKAIEDCNAALNVRPGYSKARLR  571 (608)
Q Consensus       531 ~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~  571 (608)
                      +..+|.+...++..      .|+      ...-++.-..|+-.+|++..+|+.
T Consensus       182 NYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  182 NYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             hhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            88888887777652      231      234455666677778888777754

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.11  E-value=0.51  Score=27.76  Aligned_cols=23  Identities=17%  Similarity=0.057  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 040048          568 ARLRRADCFAKIEKWEASMQDYE  590 (608)
Q Consensus       568 a~~~la~~~~~~g~~~~A~~~~~  590 (608)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34455555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.49  E-value=0.58  Score=27.50  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALY  287 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~  287 (608)
                      +.+.+|..+...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444455555555555554444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.35  E-value=8.4  Score=35.99  Aligned_cols=103  Identities=17%  Similarity=0.077  Sum_probs=76.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc--
Q 040048          505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKI--  579 (608)
Q Consensus       505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~--  579 (608)
                      ...+.+.+...+|+...+.-++..|.+......+-.+|.-.|+|++|...++-+-.+.|++   ...|..+-.|....  
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e   87 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE   87 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999888888899999999999999999999999886   33444444433221  


Q ss_pred             ------------CCHHHHHHHHHHHHHhCCC-CHHHHHHhh
Q 040048          580 ------------EKWEASMQDYEILKKEAPD-DEEVDQALQ  607 (608)
Q Consensus       580 ------------g~~~~A~~~~~~al~l~P~-~~~~~~~L~  607 (608)
                                  |...+=+..+..++.+..+ ..++...|+
T Consensus        88 vfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alr  128 (273)
T COG4455          88 VFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALR  128 (273)
T ss_pred             HhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHH
Confidence                        2555566666777776655 444444443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.90  E-value=4.7  Score=31.01  Aligned_cols=67  Identities=16%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      +.-....|.-++...+.++|+..++++++..++.++.+..+         -.+..+|...|+|.+.+++..+-+++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~l---------G~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVL---------GYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667789999999999999999999988766543         46778899999999998887665543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=87.78  E-value=57  Score=38.26  Aligned_cols=49  Identities=27%  Similarity=0.188  Sum_probs=26.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      .++..+...+++-+|-++....+.. |..+..      .|.+...|++|+.....+
T Consensus      1004 ~L~s~L~e~~kh~eAa~il~e~~sd-~~~av~------ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD-PEEAVA------LLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHcccchhHHHHHHHHhcC-HHHHHH------HHhhHhHHHHHHHHHHhc
Confidence            5556666777777777766665543 222222      233344566666555444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=86.67  E-value=55  Score=38.40  Aligned_cols=113  Identities=12%  Similarity=-0.008  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      -.++...|..+...+.+++|.-.|+.+-++.                    ..-.+|...|+|.+|+....+.-.-....
T Consensus       939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle--------------------kAl~a~~~~~dWr~~l~~a~ql~~~~de~  998 (1265)
T KOG1920|consen  939 KVIYEAYADHLREELMSDEAALMYERCGKLE--------------------KALKAYKECGDWREALSLAAQLSEGKDEL  998 (1265)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhccHH--------------------HHHHHHHHhccHHHHHHHHHhhcCCHHHH
Confidence            4555566666677777777776666553321                    11245566677777766655432211111


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI  591 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~  591 (608)
                      ...-..|+.-+...+++-+|-+.....+. +|....      .+|.+-..|++|+..-..
T Consensus       999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~~av------~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen  999 VILAEELVSRLVEQRKHYEAAKILLEYLS-DPEEAV------ALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             HHHHHHHHHHHHHcccchhHHHHHHHHhc-CHHHHH------HHHhhHhHHHHHHHHHHh
Confidence            12225677778888888888888777664 222222      233444456666654433

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=86.33  E-value=63  Score=36.37  Aligned_cols=142  Identities=8%  Similarity=-0.095  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA---LGRLLEAVFECREAIRIEPHYHRAHHR  337 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~  337 (608)
                      ..+-..+..|-..+...|++++-...-.++-++.|..+..|.....-...   .+.-.++...|++++. +-+.+..|..
T Consensus       110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e  188 (881)
T KOG0128|consen  110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEE  188 (881)
T ss_pred             ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHH
Confidence            45566677778888999999988888888888888888887766544433   4677888999999986 3344455554


Q ss_pred             HHHHH-------HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC
Q 040048          338 LANLY-------LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG  403 (608)
Q Consensus       338 la~~~-------~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  403 (608)
                      .+...       ...++++.....|.+++..+.............+......+...-..++.+..+...+...
T Consensus       189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~  261 (881)
T KOG0128|consen  189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP  261 (881)
T ss_pred             HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence            44433       4456788888889998873333322334445566666666666666677777777776654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.07  E-value=15  Score=37.62  Aligned_cols=137  Identities=16%  Similarity=0.062  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048          468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ  547 (608)
Q Consensus       468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  547 (608)
                      .+++++.-.+.+..+|+...+|..-+.+-.-.....-..-..+..-+++-+.+...++..+|+...+|+.+..++.+.+.
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~  124 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH  124 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence            35677777788888888887776332211100000011123333456778888999999999999999999999998764


Q ss_pred             --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          548 --FEKAIEDCNAALNVRPGYSKARLRRADCFAKIE----KWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       548 --~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                        +..=+..++++++.+|.+..+|..+=.+.....    ...+=+++-.+++.-++.|-.+|.
T Consensus       125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWh  187 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWH  187 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHH
Confidence              688899999999999998888765555544332    246667788888888888877764

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.77  E-value=3.1  Score=41.06  Aligned_cols=62  Identities=19%  Similarity=0.260  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          283 ALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       283 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      |+.+|.+|+.+.|.....|..+|.++...|+.-.|+-+|-+++-...-.+.+..+|..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999997665567888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.71  E-value=2.2  Score=42.15  Aligned_cols=62  Identities=26%  Similarity=0.178  Sum_probs=53.9

Q ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          517 AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       517 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      |+.+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++-...-.+.+..+|..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999998766678889999888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.52  E-value=7.5  Score=40.35  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAAL  559 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al  559 (608)
                      .+++.+|-+|+.+++|.+|++.|...+
T Consensus       165 s~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  165 STYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555444

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.43  E-value=29  Score=34.68  Aligned_cols=95  Identities=14%  Similarity=0.044  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHH
Q 040048          467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRAACRSK  544 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~  544 (608)
                      +|..-..+|.-...+.|+.....             +.+.+..+..-.+.++...+.....  -..+..++-..|.++.+
T Consensus       311 DW~~I~aLYdaL~~~apSPvV~L-------------NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r  377 (415)
T COG4941         311 DWPAIDALYDALEQAAPSPVVTL-------------NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR  377 (415)
T ss_pred             ChHHHHHHHHHHHHhCCCCeEee-------------hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH
Confidence            45565666666666666544332             5556666666666777776666554  22344566677888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048          545 LGQFEKAIEDCNAALNVRPGYSKARLRRAD  574 (608)
Q Consensus       545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~  574 (608)
                      +|+.++|...|++++.+.++..+..+.+..
T Consensus       378 Lgr~~eAr~aydrAi~La~~~aer~~l~~r  407 (415)
T COG4941         378 LGRVEEARAAYDRAIALARNAAERAFLRQR  407 (415)
T ss_pred             hCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            888888888888888888777665544433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.03  E-value=4.1  Score=39.65  Aligned_cols=57  Identities=18%  Similarity=0.150  Sum_probs=36.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                      ...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344555666666666666666666666666666666666666666666666655554

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=84.77  E-value=31  Score=36.45  Aligned_cols=31  Identities=10%  Similarity=0.128  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN  296 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~  296 (608)
                      ..-.+|+.++..|+|+-|...|+.+.+-.-+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~  240 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN  240 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh
Confidence            3556899999999999999999998875433

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=84.54  E-value=26  Score=30.33  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             HHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040048          416 EALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA  495 (608)
Q Consensus       416 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  495 (608)
                      ..+...+.....+.+++.++..++.          +...+..+..+|... +..+.+..+..    ..+..+..      
T Consensus        15 ~~~~~~~~~~~l~~yLe~~~~~~~~----------~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~------   73 (140)
T smart00299       15 ELFEKRNLLEELIPYLESALKLNSE----------NPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIE------   73 (140)
T ss_pred             HHHHhCCcHHHHHHHHHHHHccCcc----------chhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHH------
Confidence            3344567788888888888876543          266777777777654 44555565552    22333332      


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                             ..+..+.+.+-++++..+|.+.-    ....+..   .+....++++.|++++.+     ..+++.|..++..
T Consensus        74 -------~~~~~c~~~~l~~~~~~l~~k~~----~~~~Al~---~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~  134 (140)
T smart00299       74 -------KVGKLCEKAKLYEEAVELYKKDG----NFKDAIV---TLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKA  134 (140)
T ss_pred             -------HHHHHHHHcCcHHHHHHHHHhhc----CHHHHHH---HHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence                   33455566666666666665531    1111111   111223778888887775     3456777777665


Q ss_pred             HH
Q 040048          576 FA  577 (608)
Q Consensus       576 ~~  577 (608)
                      +.
T Consensus       135 ~l  136 (140)
T smart00299      135 LL  136 (140)
T ss_pred             HH
Confidence            54

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.10  E-value=21  Score=37.12  Aligned_cols=66  Identities=12%  Similarity=0.029  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          454 LLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      .....+.-++..++|..|...+..+...-|.... +..+.       ....|..+...-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~-------~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYK-------DLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3445677788999999999999999886444443 21111       124566677888999999999998765

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=83.67  E-value=18  Score=38.20  Aligned_cols=88  Identities=13%  Similarity=0.076  Sum_probs=51.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcC--C--CC---CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGL--D--PY---NSVLLCNRAACR--SKLGQFEKAIEDCNAALNVRPGYSKARLRRA  573 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~--~--p~---~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~la  573 (608)
                      ..+.++...+.+.+|...+-++...  .  -.   .+.++...|.||  ........-..-++|       .+.-+..-|
T Consensus       305 l~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK-------~af~~vLAg  377 (414)
T PF12739_consen  305 LLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK-------YAFHMVLAG  377 (414)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH-------HHHHHHHHH
Confidence            5667778888888877766665544  2  22   344555666666  111000000000000       112233447


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          574 DCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      .-|.+.|....|..+|..++....
T Consensus       378 ~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  378 HRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhC
Confidence            778999999999999999998765

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.59  E-value=3.6  Score=42.64  Aligned_cols=29  Identities=14%  Similarity=0.182  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLG  526 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~  526 (608)
                      +..++.+|.+|+.+++|.+|++.|...+-
T Consensus       164 is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  164 ISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556777777777777777777766553

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=83.20  E-value=36  Score=35.39  Aligned_cols=131  Identities=10%  Similarity=0.016  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh--HHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS--YRSNK--TAALIALGRLLEAVFECREAIRIEPH---YHRAHHRL  338 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l  338 (608)
                      -....+..++..++|..|...|+.+...-|....  .+..+  |.-++..-++.+|.+.++..+...-.   ....+..+
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~  212 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL  212 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence            3456778889999999999999999985333332  34444  44556789999999999998765321   12222222


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG  402 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  402 (608)
                      ..+......+..........     ... .....+..++..+.--...|+|+.|+..+-+++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  213 VEVLKALESILSALEDKKQR-----QKK-LYYALLADLLANAERRAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHHHHHHHhhccchhhhhcc-----ccc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            22222221111111111110     000 02233444445555555678888888877777664

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.88  E-value=4.4  Score=39.43  Aligned_cols=60  Identities=20%  Similarity=0.280  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048          300 YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG  359 (608)
Q Consensus       300 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  359 (608)
                      .+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.+.+.|++.-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            344556677778888888888888888888888888888888888888777777777654

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.81  E-value=98  Score=35.71  Aligned_cols=176  Identities=13%  Similarity=0.073  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHhCCCCCchhHHHHH---
Q 040048          301 RSNKTAALIALGRLLEAVFECREAIRIE----PHYHRAHHRLANLYLRLGEV--EKAIYHFKHAGPEADQVDIAKAK---  371 (608)
Q Consensus       301 ~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~p~~~~~~~---  371 (608)
                      +..|+..|...|+.++|++.+.+...-.    +...+.+-.+-..+..++..  +-..++-.-.+. .+|.......   
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~-~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN-KNPEAGIQIFTSE  585 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc-cCchhheeeeecc
Confidence            6778888888899999999888887732    22233444433444444433  333333333333 3333311100   


Q ss_pred             ----HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC--------hHHHHHH---------
Q 040048          372 ----SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK--------HQEADET---------  430 (608)
Q Consensus       372 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~--------~~eA~~~---------  430 (608)
                          ....--.....+.......-++.+++.++..........+..++..|.+.=+        -+++.+.         
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~  665 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF  665 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence                0011112233355667777888889988887766555666666655554222        1122222         


Q ss_pred             hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK  480 (608)
Q Consensus       431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (608)
                      ++..-..+|..   ..........|...+.++.++|+.++|+..|-..+.
T Consensus       666 l~~s~~Y~p~~---~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  666 LESSDLYDPQL---LLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             hhhhcccCcch---hhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            11111112221   111112256667777777778888888777765543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.59  E-value=22  Score=38.35  Aligned_cols=79  Identities=14%  Similarity=0.072  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048          334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL  413 (608)
Q Consensus       334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  413 (608)
                      ....++..+..+|-.++|++..      .+|+.            +-.+..+.|+++.|.....++-      .+.-|..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s------~D~d~------------rFelal~lgrl~iA~~la~e~~------s~~Kw~~  671 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELS------TDPDQ------------RFELALKLGRLDIAFDLAVEAN------SEVKWRQ  671 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcC------CChhh------------hhhhhhhcCcHHHHHHHHHhhc------chHHHHH
Confidence            4445566666666666655432      23322            2233344455555544433321      1244556


Q ss_pred             HHHHHHHcCChHHHHHHhhcCCC
Q 040048          414 QAEALLKLHKHQEADETLKNGPN  436 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~  436 (608)
                      +|++.+..+++..|.++|.++..
T Consensus       672 Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  672 LGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             HHHHHhhcccchhHHHHHHhhcc
Confidence            66666666666666666666543

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=82.31  E-value=38  Score=33.94  Aligned_cols=191  Identities=15%  Similarity=0.058  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048          281 AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      +||+.+-+-...+-|..++++-.++.++++..+...=...--..+-+...+...|        ..+-.+++...+.+++.
T Consensus       213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~~  284 (415)
T COG4941         213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRALA  284 (415)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHHH
Confidence            5666666666777777777777666666543221110000000111111222222        12223455555555543


Q ss_pred             CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048          361 EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD  440 (608)
Q Consensus       361 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  440 (608)
                      .-.|.-......+......+. ....-||..-...|+......|+.  .+-.+.+.......-.+.++...+.......-
T Consensus       285 ~~~pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~apSP--vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L  361 (415)
T COG4941         285 SRRPGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQAAPSP--VVTLNRAVALAMREGPAAGLAMVEALLARPRL  361 (415)
T ss_pred             cCCCChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHhCCCC--eEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence            122221111111111111111 122347888888888887777764  45556666666666677777777665543111


Q ss_pred             ccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048          441 ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM  490 (608)
Q Consensus       441 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  490 (608)
                      +        +....+...|.++.++|+.++|...|++++.+.++..+...
T Consensus       362 ~--------gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~  403 (415)
T COG4941         362 D--------GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF  403 (415)
T ss_pred             c--------cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence            1        22456677899999999999999999999999998877654

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=82.06  E-value=29  Score=34.52  Aligned_cols=107  Identities=14%  Similarity=0.090  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH--H
Q 040048          332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP--Q  409 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~  409 (608)
                      .+++...|..|.+.|+-+.|++.+.+..+ ..-.-..+.+.+-....+|..+....-..+.++..+..++.+.++..  .
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~-ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR  182 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYE-KTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR  182 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence            56888999999999999999988887655 22222334444556666777777777777788888888888776543  3


Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhcCCCCCC
Q 040048          410 IYALQAEALLKLHKHQEADETLKNGPNFDV  439 (608)
Q Consensus       410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p  439 (608)
                      .....|.......++.+|-..|-.++....
T Consensus       183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence            344557777888999999999988876543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.00  E-value=21  Score=38.44  Aligned_cols=134  Identities=19%  Similarity=0.065  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      ....++..+..+|-.+       +||++.++.. -   +-.+..+.|+++.|.+...++     ++..-|..||.+....
T Consensus       616 ~rt~va~Fle~~g~~e-------~AL~~s~D~d-~---rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~  679 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKE-------QALELSTDPD-Q---RFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA  679 (794)
T ss_pred             hhhhHHhHhhhccchH-------hhhhcCCChh-h---hhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence            3444454444444444       4455544432 1   224456778888887765544     4567789999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048          346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ  425 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~  425 (608)
                      |++..|.++|.++..            +..   +..++...|+-+.....-..+-+.+..      +..-.+|+..|+++
T Consensus       680 ~~l~lA~EC~~~a~d------------~~~---LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~  738 (794)
T KOG0276|consen  680 GELPLASECFLRARD------------LGS---LLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYE  738 (794)
T ss_pred             ccchhHHHHHHhhcc------------hhh---hhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHH
Confidence            999999999988754            111   111222223333222222222221111      12235677889999


Q ss_pred             HHHHHhhcCCC
Q 040048          426 EADETLKNGPN  436 (608)
Q Consensus       426 eA~~~l~~al~  436 (608)
                      ++++.+...-.
T Consensus       739 ~C~~lLi~t~r  749 (794)
T KOG0276|consen  739 ECLELLISTQR  749 (794)
T ss_pred             HHHHHHHhcCc
Confidence            99888876644

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.87  E-value=11  Score=35.16  Aligned_cols=62  Identities=18%  Similarity=0.164  Sum_probs=55.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048          271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH  332 (608)
Q Consensus       271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  332 (608)
                      ...+++.+...+|+...+.-++..|.+......+-..|.-.|+|++|...++-+-++.|++.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            44677888899999999999999999999999999999999999999999999999998873

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.80  E-value=21  Score=36.64  Aligned_cols=142  Identities=12%  Similarity=0.061  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD---  528 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---  528 (608)
                      -.++..+|.-|...|+++.|+..|-++-........+..         .+.++-.+-...|+|..-..+-.+|...-   
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvIn---------m~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~  220 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVIN---------MCLNLILVSIYMGNWGHVLSYISKAESTPDAN  220 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHH---------HHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence            467778999999999999999999997665544433322         23466677788888888777777776541   


Q ss_pred             -C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH-HHcCCH---HHHHHHHHH
Q 040048          529 -P----YNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--------RPGYSKARLRRADCF-AKIEKW---EASMQDYEI  591 (608)
Q Consensus       529 -p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~-~~~g~~---~~A~~~~~~  591 (608)
                       .    -.+.+.+.-|.+.+.+++|..|.++|-.+..-        .|.+..+|-.+.-+- +...++   -..-..|+.
T Consensus       221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~  300 (466)
T KOG0686|consen  221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKL  300 (466)
T ss_pred             hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhh
Confidence             0    11345666677777788999999998776532        345555554432221 111111   123356777


Q ss_pred             HHHhCCCCHHH
Q 040048          592 LKKEAPDDEEV  602 (608)
Q Consensus       592 al~l~P~~~~~  602 (608)
                      .+++.|.=.++
T Consensus       301 flel~Pqlr~i  311 (466)
T KOG0686|consen  301 FLELEPQLREI  311 (466)
T ss_pred             HHhcChHHHHH
Confidence            77777765443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.72  E-value=4.1  Score=27.53  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=13.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          570 LRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      +.||.+|..+|+.+.|.+.++.++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            345555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=81.63  E-value=42  Score=30.60  Aligned_cols=160  Identities=12%  Similarity=0.025  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHHH-cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 040048          407 APQIYALQAEALLK-LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL-----ACGRFEDALAAIQKAAK  480 (608)
Q Consensus       407 ~~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  480 (608)
                      .|+...+++..+.. ..++++|..+|+.-...+.           .+...+.+|..++     ..++...|++.|..+-.
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-----------y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~  101 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-----------YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD  101 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence            35667777776654 4678999999987765432           2555666665554     34578899999988765


Q ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-----CC--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH---------
Q 040048          481 QDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-----AK--FSEAAAAYGDGLGLDPYNSVLLCNRAACRSK---------  544 (608)
Q Consensus       481 ~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-----g~--~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---------  544 (608)
                        .+.+.+..            .+|.++...     ++  ..+|++++.++-++.  +..+-++|...|..         
T Consensus       102 --~n~~~aC~------------~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~a  165 (248)
T KOG4014|consen  102 --ANIPQACR------------YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNA  165 (248)
T ss_pred             --cCCHHHHh------------hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccC
Confidence              34444443            455554432     23  678999999988764  33444444444433         


Q ss_pred             ---------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 040048          545 ---------------LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI----EKWEASMQDYEILKKE  595 (608)
Q Consensus       545 ---------------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~l  595 (608)
                                     ..+.+.|.++--+|-+++  ++.+--++.+.|..-    .+.++|..+-.+|.++
T Consensus       166 p~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  166 PGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             CCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence                           356778888888887764  566667777776542    3678888888888775

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.35  E-value=75  Score=32.77  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC-------CC
Q 040048          333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG-------AD  405 (608)
Q Consensus       333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~  405 (608)
                      .++..+|.-|...|+++.|++.|.++-. ...   .....+..+++...+....++|-....+..++...-       +.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~Rd-YCT---s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~  226 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARD-YCT---SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE  226 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhh-hhc---chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh
Confidence            4677788888888888888888888544 222   233456667777777788888888777777666541       11


Q ss_pred             ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048          406 SAPQIYALQAEALLKLHKHQEADETLKNGPNF  437 (608)
Q Consensus       406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  437 (608)
                      -.+.+...-|.+.+.+++|..|..+|-.+..-
T Consensus       227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~  258 (466)
T KOG0686|consen  227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAEFD  258 (466)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            12345666677788888999999988776543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=80.03  E-value=6.1  Score=43.71  Aligned_cols=101  Identities=32%  Similarity=0.558  Sum_probs=86.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPY----NSVLLCNRAACRSK--LGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      .-|+.++..+++.+|.--|..++.+-|.    ......+.+.|+..  +|+|.+++....-++...|....+++..+.+|
T Consensus        58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y  137 (748)
T KOG4151|consen   58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY  137 (748)
T ss_pred             hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence            5567888889999998888888887663    34566778888776  56899999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          577 AKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       577 ~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      ...++++-|++.........|.+.++.
T Consensus       138 ~al~k~d~a~rdl~i~~~~~p~~~~~~  164 (748)
T KOG4151|consen  138 EALNKLDLAVRDLRIVEKMDPSNVSAS  164 (748)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence            999999999999999999999995543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	608
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		5e-12
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		3e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-07
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		1e-08
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		1e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-04
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		3e-07
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		4e-07
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		5e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		7e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		8e-07
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-06
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		9e-04
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		5e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		8e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-05
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-05
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-05
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		5e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		5e-05
1wao_1	477	Pp5 Structure Length = 477		5e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		5e-05
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		6e-05
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		7e-05
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		7e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		3e-04
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		3e-04
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		5e-04
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		6e-04
2kck_A	112	Nmr Solution Structure Of The Northeast Structural		6e-04

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 59/106 (55%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           ++ GN  FK+  +      Y + +  DP N++L  NRAAC +KL +F++A++DC+  + +
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
              + K  +R+A C   + +W  + + YE   +  P +EE  + ++
Sbjct: 77  DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           ++ GN   K   F      YG  + L+P N+V  CNRAA  SKLG +  A++DC  A+ +
Sbjct: 16  KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
            P YSKA  R     + + K   ++  Y+   +  PD+E     L+
Sbjct: 76  DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
           MDP    E  K +GN  YK G++ +A+  Y  A+ +DPN AS   N   A    G   +A
Sbjct: 3   MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 318 VFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +   ++A+ ++P+  +A +R  N Y + G+ +KAI  ++ A
Sbjct: 63  IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550
            M       A ++ GNA +KQ  + +    Y   L LDP N+    N      K G ++K
Sbjct: 2   AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
           AIE    AL + P  +KA  RR + + K   ++ +++DY+   +  P++ +  Q L
Sbjct: 62  AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 493 RKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552
           R+A  V   ++ GN  F    F+E    Y   + LDP   V   N +AC    G  EK I
Sbjct: 21  RQAYAVQL-KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
           E    AL ++P +SKA LRRA     +  +  +M D  +L
Sbjct: 80  EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 493 RKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552
           R+A  V   ++ GN  F    F+E    Y   + LDP   V   N +AC    G  EK I
Sbjct: 17  RQAYAVQL-KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 75
Query: 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
           E    AL ++P +SKA LRRA     +  +  +M D  +L
Sbjct: 76  EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
           MDP    E    +GN  YK G++ EA+  Y  A+ +DPN A    N   A    G   EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 318 VFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +   ++A+ ++P+   A + L N Y + G+ ++AI +++ A
Sbjct: 63  IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGL 525
           G +++A+   QKA + D NN E    +            GNA +KQ  + E    Y   L
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKAL 70
Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
            LDP N+    N      K G +++AIE    AL + P  ++A+
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           GNA +KQ  + E    Y   L LDP N+    N      K G +++AIE    AL + P 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
            ++A     + + K   ++ +++ Y+   +  P++ E  Q L
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 37/70 (52%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           +S GNA   + ++S+    Y   L + P N + L NRAA  S  GQ EKA ED   A  V
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 562 RPGYSKARLR 571
            P YSKA  R
Sbjct: 75  DPKYSKAWSR 84

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%)
Query: 498 VAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
           V   +  GN         +    Y + + LDP+N VL  NR+A  +K G ++KA ED   
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
            ++++P + K   R+A     + ++E + + YE   K   ++ ++ + LQ
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 494 KAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGL--DPYNSVLLCNRAACRSKLGQFEKA 551
           K K   A +  GN  F+  K+ +    Y   L L  DP   V   N +AC   +G  +K 
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---VFYSNLSACYVSVGDLKKV 58
Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
           +E    AL ++P YSK  LRRA     + K+  +M D  +L
Sbjct: 59  VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/353 (19%), Positives = 153/353 (43%), Gaps = 29/353 (8%)
Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +G +   AG  A+AL+ + AA+  DP+       +    +A+G+   A+ +  + I+++ 
Sbjct: 32  LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91
Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFK---HAGPEAD-----QVDIAKAKSLQAHLNKCT 381
            +  A  +  +L L+ G++++A   FK    + P  +     Q  + K+  +Q   ++  
Sbjct: 92  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
           +A  + D+   I      +      A ++  L+AE  +K  + ++A   LK       D 
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210
Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
           T  F+            + +    G  E +L+ +++  K D ++K      ++ K +   
Sbjct: 211 TEAFYKI----------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPY-------NSVLLCNRAACRSKLGQFEKAIED 554
             +   L +  ++++    Y   +  +P        +   +C+   C SK  +  +AI  
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH---CFSKDEKPVEAIRV 317
Query: 555 CNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
           C+  L + P    A   RA+ +   E ++ ++QDYE  ++   +D+++ + L+
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 48/89 (53%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           ++ GN  F++  + +    Y + +  +P ++ L  NRAAC +KL +F+ A++DC   + +
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYE 590
            P + K   R+A     ++ +  +M  Y+
Sbjct: 80  EPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
           MDP    E    +GN  YK G++ EA+  Y  A+ + PN A    N   A    G   EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 318 VFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +   ++A+ + P+   A + L N Y + G+ ++AI +++ A
Sbjct: 63  IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 259 STRMDP---ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
           +  +DP   E    +GN  YK G++ EA+  Y  A+ +DP  A    N   A    G   
Sbjct: 27  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           EA+   ++A+ ++P    A + L N Y + G+ ++AI +++ A
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLA-----CGRFEDALAAIQKAAKQDSNNKEVNMVM 492
           D DE   ++      +     A  NL       G +++A+   QKA + D  + E    +
Sbjct: 16  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 493 RKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552
                       GNA +KQ  + E    Y   L LDP ++    N      K G +++AI
Sbjct: 76  ------------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123
Query: 553 EDCNAALNVRP 563
           E    AL + P
Sbjct: 124 EYYQKALELDP 134

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           ++L  + N   + GN  EA+ LY  A+ + P  A+  SN  + L   G+L EA+   +EA
Sbjct: 10  DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
           IRI P +  A+  + N    + +V+ A+  +      A Q++ A A    AH N  +  K
Sbjct: 70  IRISPTFADAYSNMGNTLKEMQDVQGALQCYT----RAIQINPAFA---DAHSNLASIHK 122
Query: 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK 432
            + +    I   R A+    D  P  Y   A  L  +    + DE +K
Sbjct: 123 DSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMK 169

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 147/357 (41%), Gaps = 37/357 (10%)
Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +G +   AG  A+AL+ + AA+  DP+       +    +A G+   A+ +  + I+++ 
Sbjct: 32  LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKX 91
Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFK---HAGPEADQVDIAKAKSLQAHLNKCTDAKRT 386
            +  A  +  +L L+ G++++A   FK    + P  ++      K  Q+ L K  + +R 
Sbjct: 92  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE-----EKEAQSQLIKSDEXQRL 146
Query: 387 RD--WNTLIQETRAAIAGGADSAPQIYA-------LQAEALLKLHKHQEADETLKNGPNF 437
           R    N        A     D   ++         L+AE  +K  + ++A   LK     
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497
             D T  F+            + +    G  E +L+ +++  K D ++K      ++ K 
Sbjct: 207 KNDNTEAFYKI----------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256
Query: 498 VAAARSNGNALFKQAKFSEXXXXYGDGLGLDPY-------NSVLLCNRAACRSKLGQFEK 550
           +     +   L +  ++++    Y      +P        +   +C+   C SK  +  +
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH---CFSKDEKPVE 313
Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
           AI  C+  L   P    A   RA+ +   E ++ ++QDYE  ++   +D+++ + L+
Sbjct: 314 AIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLE 370

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           +  GN LF   K+ E    YG  +  +P  +V   NRA C  K+ Q E+A+ DC  AL +
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 562 RPGYSKARLRRADCFAKIEKWEASM 586
                KA      C  ++E ++ ++
Sbjct: 68  DGQSVKAHFFLGQCQLEMESYDEAI 92

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 489 NMVMRKAKGVAAARS-NGNALFKQAKFSEXXXXY-------GDGLGLDPYNSV------- 533
           +M + +  G A  R  +GN+LFK+ K  E    Y       GD      Y          
Sbjct: 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV 228
Query: 534 ---LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
                 N AAC  KL ++++AI  CN  L       KA  RR    A++ + +++  D+ 
Sbjct: 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFR 288
Query: 591 ILKKEAPDDEEVDQALQ 607
             +K APDD+ + + L+
Sbjct: 289 KAQKYAPDDKAIRRELR 305

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582
           DG  L P     + N  AC+ K+  ++ A++ C  AL + P  +KA  RRA  +  ++++
Sbjct: 264 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 323
Query: 583 EASMQDYEILKKEAPDDEEVDQAL 606
           + ++ D +  ++ AP+D+ +   L
Sbjct: 324 DQALADLKKAQEIAPEDKAIQAEL 347

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           +  GN LF   K+ E    YG  +  +P  +V   NRA C  K+ Q E+A+ DC  AL +
Sbjct: 13  KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 562 RPGYSKARLRRADCFAKIEKWEASM 586
                KA      C  ++E ++ ++
Sbjct: 73  DGQSVKAHFFLGQCQLEMESYDEAI 97

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           ++  N  FK   +      Y   + L+P N++   NR+    +   +  A+ D   A+ +
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
              Y K   RRA     + K+ A+++DYE + K  P D++     QE
Sbjct: 70  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/353 (19%), Positives = 146/353 (41%), Gaps = 29/353 (8%)
Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +G +   AG  A+AL+ + AA+  DP+       +    +A G+   A+ +  + I ++ 
Sbjct: 9   LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKX 68
Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFK---HAGPEAD-----QVDIAKAKSLQAHLNKCT 381
            +  A  +  +L L+ G++++A   FK    + P        +  + KA   Q   ++  
Sbjct: 69  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQAL 128
Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
           DA    D+   I      +      A ++  L+AE  +K  + ++A   LK       D 
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187
Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
           T  F+            + +    G  E +L+ +++  K D ++K      ++ K +   
Sbjct: 188 TEAFYKI----------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPY-------NSVLLCNRAACRSKLGQFEKAIED 554
             +   L +  ++++    Y      +P        +   +C+   C SK  +  +AI  
Sbjct: 238 IESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH---CFSKDEKPVEAIRI 294
Query: 555 CNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
           C+  L   P    A   RA+ +   E ++ ++QDYE  ++   +D+++ + L+
Sbjct: 295 CSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLE 347

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 255 CRALSTRMDP---ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
           C   + R+ P   ++L  + N   + GN  EA+ LY  A+ + P  A+  SN  + L   
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLAN 340
           G+L EA+   +EAIRI P +  A+  + N
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGN 381

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           ++  N  FK   +      Y   + L+P N++   NR+    +   +  A+ D   A+ +
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
              Y K   RRA     + K+ A+++DYE + K  P D++     QE
Sbjct: 77  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 495 AKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPY---NSVLLCNRAACRSKLGQFEKA 551
           A  V   R  GN LFK   +      Y   LGLD      +VL  NRAAC  KL  ++KA
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84
Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
             + + A+    G  KA  RR+    K+ + + ++ D +      P ++   +AL+
Sbjct: 85  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
           MDP    E    +GN  YK G++ EA+  Y  A+ +DPN A    N   A    G   EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 318 VFECREAIRIEPHYHRAHHRLAN 340
           +   ++A+ ++P+   A   L N
Sbjct: 63  IEYYQKALELDPNNAEAKQNLGN 85

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 438 DVDETTRFFGPIGNA-------NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490
           D    ++ F  IGNA          +   Q +L   R  D L  ++ A K+         
Sbjct: 74  DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE--------- 124
Query: 491 VMRKAKGVA--------AARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACR 542
            ++KA+  A         AR  G   F ++ +      Y + +   P ++    NRAA  
Sbjct: 125 -LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183
Query: 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587
           +KL  F +AI DCN A+   P + +A +R+A     ++++ ++++
Sbjct: 184 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           E  K  GN  +K G + EA+  YD  I+  P      SNK  ALI LG   +A+  C++ 
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 325 IR 326
           +R
Sbjct: 65  LR 66

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 501 ARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560
           AR  G   F ++ +      Y + +   P ++    NRAA  +KL  F +AI DCN A+ 
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 561 VRPGYSKARLRRADCFAKIEKWEASMQ 587
             P + +A +R+A     ++++ ++++
Sbjct: 67  KDPNFVRAYIRKATAQIAVKEYASALE 93

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327
           K +GN+ YK  +F  AL  YD A  +DP   +Y +N+ A     G   +    C +AI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 328 EPHYHRAHHRLANLYLRLG 346
                  + ++A  Y R+G
Sbjct: 68  GRENREDYRQIAKAYARIG 86

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327
           K +GN+ YK  +F  AL  YD A  +DP   +Y +N+ A     G   +    C +AI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 328 EPHYHRAHHRLANLYLRLG 346
                  + ++A  Y R+G
Sbjct: 68  GRENREDYRQIAKAYARIG 86

>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural Genomics Consortium (Nesg) Target Mrr121a Length = 112

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +PE   + G   Y AGN+ E++ L++ AI +DP ++ Y   K  AL  L R  EAV +C 
Sbjct: 5   NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV-DCY 63
Query: 323 EAI--RIEPHYHR 333
             +   IE  Y++
Sbjct: 64  NYVINVIEDEYNK 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	608
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-39
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-34
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-25
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-37
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-29
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-36
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-33
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-20
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-32
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-32
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-31
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-24
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-19
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-19
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-31
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-19
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-20
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-30
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-29
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	8e-20
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-29
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-18
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-21
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-10
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-27
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-26
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-25
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-25
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-23
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-25
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-24
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-22
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-21
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-23
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-23
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-12
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-20
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-21
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-21
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-20
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-14
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-20
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-10
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-19
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-18
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	9e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-14
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-08
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	9e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	7e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	1e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-05
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	2e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	5e-06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	3e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	5e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  280 bits (718), Expect = 2e-89
 Identities = 70/358 (19%), Positives = 149/358 (41%), Gaps = 23/358 (6%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D E    +G +   AG  A+AL+ + AA+  DP+       +    +A+G+   A+ +  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK--------HAGPEADQVDIAKAKSLQ 374
           + I ++  +  A  +  +L L+ G++++A   FK            +  +  + KA  +Q
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121

Query: 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG 434
              ++  DA    D+   I      +      A ++  L+AE  +K  + ++A   LK  
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAA 180

Query: 435 PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494
                D          N       + +    G  E +L+ +++  K D ++K      ++
Sbjct: 181 SKLKSD----------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230

Query: 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP----YNSVLLCNRAACRSKLGQFEK 550
            K +     +   L +  ++++A + Y   +  +P    Y          C SK  +  +
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290

Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
           AI  C+  L + P    A   RA+ +   E ++ ++QDYE  ++   +D+++ + L++
Sbjct: 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  109 bits (275), Expect = 2e-26
 Identities = 36/239 (15%), Positives = 87/239 (36%), Gaps = 26/239 (10%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
              + +   ++  A+   D  + +    A  R  +    I  G   +A+ + + A +++ 
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHA---GPEADQV--DIAKAKSLQAHLNKCTDAK 384
               A ++++ LY +LG+ E ++   +       +  +      + K L   +    +  
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245

Query: 385 RTRDWNTLIQETRAAIA---GGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNF 437
           R   +     +  + +      A+   +          K  K  EA     E L+  P+ 
Sbjct: 246 RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD- 304

Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK 496
                        N N L  RA+  L    +++A+   + A + + N++++   + KA+
Sbjct: 305 -------------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 24/161 (14%), Positives = 43/161 (26%), Gaps = 16/161 (9%)

Query: 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNAL 508
            +    +   +  LA G+  DAL+    A   D +N               A        
Sbjct: 1   ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-------------YIAYYRRATVF 47

Query: 509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568
               K   A       + L    +     R     K G+ ++A +D    L   P   + 
Sbjct: 48  LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107

Query: 569 RLRRADCFAKIEKWEASMQDYEILKKEAPDD--EEVDQALQ 607
           +   +      E      Q  +             +D+ L+
Sbjct: 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 11/76 (14%), Positives = 27/76 (35%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334
            K     EA+ +    + ++P+  +   ++  A +      EA+ +   A     +  + 
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

Query: 335 HHRLANLYLRLGEVEK 350
              L      L + +K
Sbjct: 343 REGLEKAQRLLKQSQK 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  273 bits (701), Expect = 8e-86
 Identities = 69/358 (19%), Positives = 151/358 (42%), Gaps = 23/358 (6%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D E    +G +   AG  A+AL+ + AA+  DP+       +    +A+G+   A+ +  
Sbjct: 25  DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK--------HAGPEADQVDIAKAKSLQ 374
           + I+++  +  A  +  +L L+ G++++A   FK            +  Q  + K+  +Q
Sbjct: 85  KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144

Query: 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG 434
              ++  +A  + D+   I      +      A ++  L+AE  +K  + ++A   LK  
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAA 203

Query: 435 PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494
                D          N       + +    G  E +L+ +++  K D ++K      ++
Sbjct: 204 SKLKND----------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253

Query: 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP----YNSVLLCNRAACRSKLGQFEK 550
            K +     +   L +  ++++A + Y   +  +P    Y          C SK  +  +
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
           AI  C+  L + P    A   RA+ +   E ++ ++QDYE  ++   +D+++ + L++
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  107 bits (268), Expect = 6e-25
 Identities = 46/279 (16%), Positives = 93/279 (33%), Gaps = 40/279 (14%)

Query: 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWN 390
           +H  HH             +++                    ++ HL             
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSM------------------ADVEKHLELGKKLLAAGQLA 43

Query: 391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFF 446
             + +  AA+ G  D+    Y  +A   L + K + A     + ++   +F         
Sbjct: 44  DALSQFHAAVDGDPDNY-IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF--------- 93

Query: 447 GPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN---MVMRKAKGVAAARS 503
                    + R  + L  G+ ++A    +K  K + +  E       + K+  +   RS
Sbjct: 94  -----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148

Query: 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563
                F    ++ A A     L +  +++ L   RA C  K G+  KAI D  AA  ++ 
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208

Query: 564 GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
             ++A  + +  + ++   E S+ +     K   D +  
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 247

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334
            K     EA+ +    + ++P+  +   ++  A +      EA+ +   A     +  + 
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

Query: 335 HHRLANLYLRLGEVEKAIYHFKHA-GPEADQVDIAKA---KSLQAHLNK 379
              L      L + +K  Y+        A + +I KA    +LQ H + 
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  147 bits (374), Expect = 2e-39
 Identities = 55/334 (16%), Positives = 106/334 (31%), Gaps = 42/334 (12%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +   L ++ +  ++      +      AI  +P  A   SN        G+L EA+   R
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCT 381
            A+R++P +   +  LA   +  G++E A+  +  A        +           +   
Sbjct: 92  HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA--------LQYNPDLYCVRSDLGN 143

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNF 437
             K              AI    + A   ++          +   A    ++ +   PNF
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497
                          +  +    V      F+ A+AA  +A     N+            
Sbjct: 203 --------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH------------ 236

Query: 498 VAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCN 556
            A    N     ++Q     A   Y   + L P+     CN A    + G   +A +  N
Sbjct: 237 -AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295

Query: 557 AALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
            AL + P ++ +    A+   +    E +++ Y 
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  139 bits (352), Expect = 2e-36
 Identities = 67/327 (20%), Positives = 116/327 (35%), Gaps = 42/327 (12%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           + + +Y+AG+F  A          +P+        ++      RL  +      AI+  P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCTDAKRTRD 388
               A+  L N+Y   G++++AI H++HA        +  K   +  ++N         D
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHA--------LRLKPDFIDGYINLAAALVAAGD 116

Query: 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTR 444
               +Q   +A+    D    + +     L  L + +EA     + ++  PNF       
Sbjct: 117 MEGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAKACYLKAIETQPNF------- 168

Query: 445 FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN 504
                  A        V  A G    A+   +KA   D N                A  N
Sbjct: 169 -------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------------LDAYIN 208

Query: 505 -GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563
            GN L +   F  A AAY   L L P ++V+  N A    + G  + AI+    A+ ++P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 564 GYSKARLRRADCFAKIEKWEASMQDYE 590
            +  A    A+   +      +   Y 
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYN 295

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  133 bits (336), Expect = 4e-34
 Identities = 62/329 (18%), Positives = 117/329 (35%), Gaps = 52/329 (15%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             +    +      AG+   A+  Y +A+  +P+    RS+    L ALGRL EA     
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCT 381
           +AI  +P++  A   L  ++   GE+  AI+HF+ A        +      L A++N   
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA--------VTLDPNFLDAYINLGN 211

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNF 437
             K  R ++  +     A++   + A  ++   A    +      A       ++  P+F
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHA-VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQKAAKQDSNNKEVNMVM 492
                                A  NLA      G   +A      A +    +       
Sbjct: 271 -------------------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH------- 304

Query: 493 RKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
                 A + +N  N   +Q    EA   Y   L + P  +    N A+   + G+ ++A
Sbjct: 305 ------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIE 580
           +     A+ + P ++ A     +   +++
Sbjct: 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  106 bits (268), Expect = 3e-25
 Identities = 49/293 (16%), Positives = 89/293 (30%), Gaps = 40/293 (13%)

Query: 303 NKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEA 362
                    G    A   C +  R EP        L++++ +   ++++ +    A    
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA---- 59

Query: 363 DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422
             +        +A+ N     K        I+  R A+    D     Y   A AL+   
Sbjct: 60  --IKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI-DGYINLAAALVAAG 115

Query: 423 KHQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA 478
             + A       L+  P+                 +      +  A GR E+A A   KA
Sbjct: 116 DMEGAVQAYVSALQYNPDL--------------YCVRSDLGNLLKALGRLEEAKACYLKA 161

Query: 479 AKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN 537
            +   N              A A SN G     Q +   A   +   + LDP       N
Sbjct: 162 IETQPNF-------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208

Query: 538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
                 +   F++A+     AL++ P ++      A  + +    + ++  Y 
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             ++L  + N   + GN  EA+ LY  A+ + P  A+  SN  + L   G+L EA+   +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGE 347
           EAIRI P +  A+  + N    + +
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 8e-11
 Identities = 11/98 (11%), Positives = 37/98 (37%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
            +  ++   F  A          +P N+ +L   ++   +  + +++      A+   P 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
            ++A     + + +  + + +++ Y    +  PD  + 
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 20/68 (29%)

Query: 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594
               A    + G FE A   C       P  +   L  +    +  + + S     +  K
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 595 EAPDDEEV 602
           + P   E 
Sbjct: 62  QNPLLAEA 69

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  145 bits (368), Expect = 1e-37
 Identities = 58/343 (16%), Positives = 118/343 (34%), Gaps = 29/343 (8%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
             LK  GN  + A NF EA+  Y  AI +DPN+  + SN +A  I+ G L + +    +A
Sbjct: 26  VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKA 85

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA----GPEADQVDIAKAKSLQAHLNKC 380
           + I+P + +A  R A+    LG    A++           +   ++    ++L     K 
Sbjct: 86  LEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKV 145

Query: 381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIY--ALQAEALLKLHKHQEADETLKNGPNFD 438
            +   ++D     Q   +       S   I+   L+  ++     +  A   L +     
Sbjct: 146 LNENLSKDEGRGSQVLPS--NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
              T        +   LV    +  +   +   L+A         N              
Sbjct: 204 YSAT--------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL----------- 244

Query: 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
            A    G   F +    +A     + + L P         A   +     ++  +    A
Sbjct: 245 -ALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKA 302

Query: 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
           +++ P Y      R   +  ++ ++ + +D++  +   P++  
Sbjct: 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  120 bits (302), Expect = 6e-29
 Identities = 52/338 (15%), Positives = 106/338 (31%), Gaps = 67/338 (19%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
               L   G   +   N  +A  L   +I++ P   SY       L       E     +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY-IFLALTLADKENSQEFFKFFQ 300

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           +A+ + P Y   ++    +Y  L + + A   F+ A        +   +++  ++     
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA------QSL-NPENVYPYIQL--- 350

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFD 438
                                           A  L K  K  E+    +ET    P   
Sbjct: 351 --------------------------------ACLLYKQGKFTESEAFFNETKLKFPTL- 377

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE--VNM--VMRK 494
                          +    A++    G F+ A+     A + +   ++  V +  ++ K
Sbjct: 378 -------------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424

Query: 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED 554
           A  +A   S       + KF+ A         LDP +       A  + ++ + ++AIE 
Sbjct: 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484

Query: 555 CNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
              +  +     +    +A  FA+  K +  ++   I+
Sbjct: 485 FEDSAILARTMDEK--LQATTFAEAAKIQKRLRADPII 520

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  105 bits (263), Expect = 5e-24
 Identities = 43/383 (11%), Positives = 96/383 (25%), Gaps = 69/383 (18%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +P     +       G+  + +     A+ I P+ +     + +A  +LG   +A+    
Sbjct: 58  EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM-FDL 116

Query: 323 EAIRIEPHYHRA-------------------------HHRLANLYLRLGEVEKAIYHFKH 357
             + +   +  A                           R + +      +      F  
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176

Query: 358 A---GPEADQVDIAKAKSL--------------QAHLNKCTDAKRTRDWNTLIQETRAAI 400
                      +   A +L                 +      K T  +++L+       
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 401 AGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ 460
               ++A              +   +A   L+   N                N  +  A 
Sbjct: 237 PLRENAA-LALCYTGIFHFLKNNLLDAQVLLQESINLH-----------PTPNSYIFLAL 284

Query: 461 VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAA 519
                   ++     QKA   +                     + G   F    +  A  
Sbjct: 285 TLADKENSQEFFKFFQKAVDLNPEY-------------PPTYYHRGQMYFILQDYKNAKE 331

Query: 520 AYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579
            +     L+P N       A    K G+F ++    N      P   +     A+     
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391

Query: 580 EKWEASMQDYEILKKEAPDDEEV 602
             ++ +++ Y+I K+     E++
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  101 bits (254), Expect = 7e-23
 Identities = 39/321 (12%), Positives = 99/321 (30%), Gaps = 29/321 (9%)

Query: 278 GNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR 333
           G+             + P++    A    N+           EA+   + AI ++P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI 393
            +  ++  Y+  G++EK I     A      ++I K    +A L + +  +   ++   +
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKA------LEI-KPDHSKALLRRASANESLGNFTDAM 113

Query: 394 QETRAAI--AGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGN 451
            +            ++ +    +      +    E     +   +  +   T      G 
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173

Query: 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ 511
            +  +  + VN +   ++ A A +  A ++  +  +                  N L  +
Sbjct: 174 FDSHLEVSSVNTS-SNYDTAYALLSDALQRLYSATD------------EGYLVANDLLTK 220

Query: 512 A--KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
           +   +    +A      L    ++ LC              A      ++N+ P    + 
Sbjct: 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSY 279

Query: 570 LRRADCFAKIEKWEASMQDYE 590
           +  A   A  E  +   + ++
Sbjct: 280 IFLALTLADKENSQEFFKFFQ 300

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  101 bits (253), Expect = 8e-23
 Identities = 40/347 (11%), Positives = 83/347 (23%), Gaps = 81/347 (23%)

Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALI--ALGRLLEAVFECREAI 325
            +  +    + N+  A AL   A+    +           L+  +       +       
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR 385
            +  +   A       +     +  A    + +        I    +  +++        
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQES--------INLHPTPNSYIFL------ 282

Query: 386 TRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDE 441
                                        A  L      QE      + +   P      
Sbjct: 283 -----------------------------ALTLADKENSQEFFKFFQKAVDLNPE----- 308

Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
                           R Q+      +++A    QKA   +  N                
Sbjct: 309 ---------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------------VYP 346

Query: 502 RSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560
                  L+KQ KF+E+ A + +     P    +    A   +  G F+ AI+  + A  
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

Query: 561 VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
           +     K  +       K                   D+E+ + A++
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQL----DEEKFNAAIK 449

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 36/305 (11%), Positives = 76/305 (24%), Gaps = 64/305 (20%)

Query: 256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
            +++    P +   +        N  E    +  A+ ++P       ++      L    
Sbjct: 268 ESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA 375
            A  + ++A  + P     + +LA L  + G+  ++   F             + K    
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN------------ETKLKF- 374

Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETL 431
                                         + P++    AE L        A    D   
Sbjct: 375 -----------------------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405

Query: 432 KNGPNFDVDETTR--FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN 489
           +     +          G          +    L   +F  A+  + KA + D  +    
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS---- 461

Query: 490 MVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF 548
                      A+        +  K  EA   + D   L       L        +  + 
Sbjct: 462 ---------EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFA--EAAKI 510

Query: 549 EKAIE 553
           +K + 
Sbjct: 511 QKRLR 515

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           G   +    I +      + ++           A    N GN  F    F+EA   Y   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAY---------AVQLKNRGNHFFTAKNFNEAIKYYQYA 51

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
           + LDP   V   N +AC    G  EK IE    AL ++P +SKA LRRA     +  +  
Sbjct: 52  IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111

Query: 585 SMQDYEILKKEAPDDEEVDQALQE 608
           +M D  +L      D    + + E
Sbjct: 112 AMFDLSVLSLNGDFDGASIEPMLE 135

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 35/263 (13%), Positives = 65/263 (24%), Gaps = 44/263 (16%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
            P T    G   +   ++  A   +  A S++P            L   G+  E+     
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           E     P         A +    G+ + AI  +  A        + +    + H+     
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA------KRL-EEVQEKIHVGI--- 418

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFD 438
                               G  +     + Q    L   K   A     +  +  P   
Sbjct: 419 ----------------GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS- 461

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
                            +  AQ+ L   + ++A+   + +A       E       A+  
Sbjct: 462 -------------EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAA 508

Query: 499 AAARSNGNALFKQAKFSEAAAAY 521
              +         AK     A Y
Sbjct: 509 KIQKRLRADPIISAKMELTLARY 531

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  141 bits (358), Expect = 2e-36
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 20/345 (5%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
             LK  GN+ ++   + +A+  Y+ A+ +  +   Y SN +A  +++G L + V    +A
Sbjct: 7   LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGDLKKVVEMSTKA 65

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
           + ++P Y +   R A+    LG+   A++         D  D     S++  L +  + +
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND----ASIEPMLERNLNKQ 121

Query: 385 RTRDWNTLIQETRAAIAGGADSAPQ---IYALQAEALLKLHKHQEADETLKNGPNF-DVD 440
                     +   A A   + + Q       + E L  +          K    F + D
Sbjct: 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYD 181

Query: 441 ETTRFFGPIGNANL---LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497
           E+      + N             + A   F  A    ++   +++ ++++       + 
Sbjct: 182 ESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK------EK 235

Query: 498 VAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCN 556
           +A +  + G   F +     A       + L P         A   +      +     +
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFD 294

Query: 557 AALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
            AL +    S     R      ++ ++ + +D++  K+  P++  
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  115 bits (291), Expect = 1e-27
 Identities = 52/425 (12%), Positives = 113/425 (26%), Gaps = 70/425 (16%)

Query: 212 NNNRYPNSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMG 271
            N+     ++   + KQ          +     ++ +   T   +    + +        
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164

Query: 272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALI------------ALGRLLEAVF 319
              +         A YD +   D    +  SN                  A     E + 
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224

Query: 320 ECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNK 379
           +  E  +++     +            +   A    K A        I     + +++  
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA--------IELFPRVNSYIYM 276

Query: 380 CTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGP 435
                   D          A+   ++++  +Y  + +    L  + +A    D+  +  P
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNS-SVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 436 NFDVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQKAAKQDSNNKEVNM 490
                                +   + LAC      +F+D      +A ++     EV  
Sbjct: 336 EN-------------------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN 376

Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK------ 544
                            L  +  F +A   Y   + L+     +    A    K      
Sbjct: 377 FF------------AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424

Query: 545 ---LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
              +  F +A      A  + P   +A++  A    + E  + ++  +E     A   EE
Sbjct: 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484

Query: 602 VDQAL 606
             QA+
Sbjct: 485 KLQAI 489

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  115 bits (290), Expect = 2e-27
 Identities = 43/343 (12%), Positives = 99/343 (28%), Gaps = 33/343 (9%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334
              G+  + + +   A+ + P+ +     + +A   LG+  +A+      + +   ++ A
Sbjct: 50  VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM-FDLSVLSLNGDFNDA 108

Query: 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQ 394
                   L     ++A+   K    + D       +       +  D +      T + 
Sbjct: 109 S---IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165

Query: 395 ETRAAIAGGADSAPQ----------IYALQAEALLKLHKHQEADETLKNGPNFDVDETTR 444
                       A            +  L          + +ADE+         ++  +
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225

Query: 445 FFGPIG----NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500
                      A  L               A   I+KA +                    
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--------------VN 271

Query: 501 ARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
           +       +  +   +E    +   L LD  NS +  +R      L  +++A +D + A 
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
            + P      ++ A    +  K++     +   K++ P+  EV
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  100 bits (250), Expect = 2e-22
 Identities = 40/354 (11%), Positives = 93/354 (26%), Gaps = 55/354 (15%)

Query: 275 YKAGNFAEALALYDA-AISIDPNKASYRS--NKTAALIALGRLLEAVFECREAIRIEPHY 331
              G FA+A+      +++ D N AS      +     A+ +L E   +   A       
Sbjct: 84  EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL 143

Query: 332 HRAHHRLANL-------------YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLN 378
                +                 +  + + E    ++  +     ++    +   +    
Sbjct: 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE 203

Query: 379 KCTDA-----KRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DE 429
               A     K  R +   + +           A              +    A     +
Sbjct: 204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA-ISLEHTGIFKFLKNDPLGAHEDIKK 262

Query: 430 TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN 489
            ++  P  +                 +  A +        +      KA K DSNN    
Sbjct: 263 AIELFPRVNS---------------YIYMALIMADRNDSTEYYNYFDKALKLDSNN---- 303

Query: 490 MVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF 548
                    ++   + G   F    + +A   +     LDP N       A    +  +F
Sbjct: 304 ---------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354

Query: 549 EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
           +      + A    P   +     A+       ++ +++ Y++  +     + +
Sbjct: 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 40/304 (13%), Positives = 80/304 (26%), Gaps = 67/304 (22%)

Query: 256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
           +A+       +   M        +  E    +D A+ +D N +S   ++      L    
Sbjct: 262 KAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA 375
           +A  +  +A  ++P     + +LA L  R  + +     F             +AK    
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS------------EAKRKFP 369

Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETL 431
                                           P++    AE L   +   +A    D  +
Sbjct: 370 EA------------------------------PEVPNFFAEILTDKNDFDKALKQYDLAI 399

Query: 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491
           +             +  I            N     F +A   ++KA+K D  +      
Sbjct: 400 ELENKL-----DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS------ 448

Query: 492 MRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550
                    A+        +Q    EA   + +   L       L        +  + ++
Sbjct: 449 -------EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA--EAAKVQQ 499

Query: 551 AIED 554
            I  
Sbjct: 500 RIRS 503

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 31/301 (10%), Positives = 93/301 (30%), Gaps = 14/301 (4%)

Query: 295 PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYH 354
              A    +K        +  +A+     A+ ++      +  L+  Y+ +G+++K +  
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61

Query: 355 FKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE-TRAAIAGG-ADSAPQIYA 412
              A      +++ K    +  L + +  +    +   + + +  ++ G   D++ +   
Sbjct: 62  STKA------LEL-KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114

Query: 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLV---VRAQVNLACGRFE 469
            +      + K +E    +        + +T+      +    +             + E
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174

Query: 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP 529
              A   ++ + D         + K    +  +++ +       F E      +   L  
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234

Query: 530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY 589
             ++ L +    +        A ED   A+ + P  + + +  A   A           +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYF 293

Query: 590 E 590
           +
Sbjct: 294 D 294

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           GN  F+  K+ +A   Y   L L   + V   N +AC   +G  +K +E    AL ++P 
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71

Query: 565 YSKARLRRADCFAKIEKWEASMQDYE-ILKKEAPDDEEVDQALQ 607
           YSK  LRRA     + K+  +M D   +      +D  ++  L+
Sbjct: 72  YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 31/263 (11%), Positives = 69/263 (26%), Gaps = 65/263 (24%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +       G  ++   N+ +A   +D A  +DP                 +  +      
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           EA R  P      +  A +     + +KA+  +  A      +++   K    ++     
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA------IELEN-KLDGIYVG---- 411

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFD 438
                          A + G A    +   ++           EA    ++  K  P   
Sbjct: 412 --------------IAPLVGKATLLTRNPTVE--------NFIEATNLLEKASKLDPRS- 448

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
                            +  AQ+ L     ++A+   +++A      +E           
Sbjct: 449 -------------EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL--------- 486

Query: 499 AAARSNGNALFKQAKFSEAAAAY 521
                      + AK  +   + 
Sbjct: 487 -----QAITFAEAAKVQQRIRSD 504

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  123 bits (310), Expect = 2e-33
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 483 SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR 542
           SN +   +    A      ++ GN  FK+  +  A   Y + +  DP N++L  NRAAC 
Sbjct: 1   SNARLAYINPELA---QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACL 57

Query: 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
           +KL +F++A++DC+  + +   + K  +R+A C   + +W  + + YE   +  P +EE 
Sbjct: 58  TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

Query: 603 DQALQE 608
            + ++ 
Sbjct: 118 REGVRN 123

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 84.6 bits (210), Expect = 7e-20
 Identities = 27/94 (28%), Positives = 46/94 (48%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           +  K  GNE +K G++  A+  Y+ A+  DP  A   SN+ A L  L     A+ +C   
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC 73

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           IR++  + + + R A   + + E  KA   ++ A
Sbjct: 74  IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  130 bits (328), Expect = 2e-32
 Identities = 45/390 (11%), Positives = 90/390 (23%), Gaps = 34/390 (8%)

Query: 204 RGNNNTNKNNNRYPNSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEP-TSLCRALS-TR 261
           RG     +  + + N++ G  +    +      +++  K A  +       LC+A   T 
Sbjct: 44  RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 103

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
                +                L +   A  + P +    ++      AL  +   +   
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKC 380
            +A  + P    A          L  V++ +     A             + + A  +  
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA--------HGLTPQQVVAIASNG 215

Query: 381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD 440
              +       L+     A            A        L   Q     L         
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTPQQV-VAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 441 ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500
                         +   +    A    +  L  + +A                   V A
Sbjct: 275 ----------QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ------------VVA 312

Query: 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560
             SNG                    GL P   V + +    +  L   ++ +     A  
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

Query: 561 VRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           + P    A          +E  +  +    
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLC 402

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  129 bits (326), Expect = 3e-32
 Identities = 39/341 (11%), Positives = 72/341 (21%), Gaps = 32/341 (9%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
               +   G            L +   A  + P +    ++      AL  +   +    
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCT 381
           +A  + P    A          L  V++ +     A             + + A  +   
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--------HGLTPQQVVAIASNSG 284

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
             +       L+     A            A        L   Q     L          
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTPQQV-VAIASNGGGKQALETVQRLLPVLCQAHGLTPQ- 342

Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
                        +        A    +  L  + +A                   V A 
Sbjct: 343 ---------QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ------------VVAI 381

Query: 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
            SNG                    GL P   V + +    +  L   ++ +     A  +
Sbjct: 382 ASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 441

Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
            P    A          +E   A +   +       +D  V
Sbjct: 442 TPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  127 bits (321), Expect = 1e-31
 Identities = 37/344 (10%), Positives = 73/344 (21%), Gaps = 41/344 (11%)

Query: 253 SLCRALS-TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
            LC+A   T      +                L +   A  + P +    ++      AL
Sbjct: 128 VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187

Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KA 370
             +   +    +A  + P    A          L  V++ +     A             
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--------HGLTP 239

Query: 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA--- 427
           + + A  +     +       L+     A            A  +     L   Q     
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV-VAIASNSGGKQALETVQRLLPV 298

Query: 428 -DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486
             +     P                   +        A    +  L  + +A        
Sbjct: 299 LCQAHGLTPQQ--------------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ- 343

Query: 487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG 546
                      V A  S+                     GL P   V + +    +  L 
Sbjct: 344 -----------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE 392

Query: 547 QFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
             ++ +     A  + P    A          +E  +  +    
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  106 bits (267), Expect = 1e-24
 Identities = 36/322 (11%), Positives = 71/322 (22%), Gaps = 34/322 (10%)

Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNK--TAALIALGRLLEAVFECREAIRIE 328
                       A  L    + +D  +    + +    A+ A+     A+      + + 
Sbjct: 11  SGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT--GAPLNLT 68

Query: 329 PHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD 388
           P    A          L  V++ +       P   Q      + + A  +     +    
Sbjct: 69  PEQVVAIASHDGGKQALETVQRLL-------PVLCQAHGLTPQQVVAIASHDGGKQALET 121

Query: 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGP 448
              L+     A     +      A        L   Q     L        +        
Sbjct: 122 VQRLLPVLCQAHGLTPEQV-VAIASHDGGKQALETVQALLPVLCQAHGLTPE-------- 172

Query: 449 IGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL 508
                 +        A    +  L  + +A                   V A  SNG   
Sbjct: 173 --QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ------------VVAIASNGGGK 218

Query: 509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568
                            GL P   V + +    +  L   ++ +     A  + P    A
Sbjct: 219 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278

Query: 569 RLRRADCFAKIEKWEASMQDYE 590
               +     +E  +  +    
Sbjct: 279 IASNSGGKQALETVQRLLPVLC 300

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 88.7 bits (220), Expect = 9e-19
 Identities = 31/296 (10%), Positives = 62/296 (20%), Gaps = 39/296 (13%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
               +   G            L +   A  + P +    ++ +    AL  +   +    
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCT 381
           +A  + P    A          L  V++ +     A             + + A  +   
Sbjct: 301 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--------HGLTPQQVVAIASHDG 352

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
             +       L+     A     +    I +        L   Q     L        + 
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASN-GGGKQALETVQRLLPVLCQAHGLTPE- 410

Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
                        +        A    +  L  + +A                   V A 
Sbjct: 411 ---------QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ------------VVAI 449

Query: 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
            SNG             +     L           +     + LG    A++    
Sbjct: 450 ASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGG-RPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 16/151 (10%), Positives = 30/151 (19%), Gaps = 12/151 (7%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510
               +        A    +  L  + +A                   V A  S+      
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ------------VVAIASHDGGKQA 118

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570
                          GL P   V + +    +  L   +  +     A  + P    A  
Sbjct: 119 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIA 178

Query: 571 RRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
                   +E  +  +          P    
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 18/146 (12%), Positives = 37/146 (25%), Gaps = 7/146 (4%)

Query: 457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE 516
           +            +A+ A + A         +N+     + V A  S+            
Sbjct: 38  LLKIAKRGGVTAVEAVHAWRNALT----GAPLNL---TPEQVVAIASHDGGKQALETVQR 90

Query: 517 AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576
                    GL P   V + +    +  L   ++ +     A  + P    A        
Sbjct: 91  LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK 150

Query: 577 AKIEKWEASMQDYEILKKEAPDDEEV 602
             +E  +A +          P+    
Sbjct: 151 QALETVQALLPVLCQAHGLTPEQVVA 176

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  119 bits (301), Expect = 6e-32
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 3/141 (2%)

Query: 471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530
             +             E       A  V   R  GN LFK   +  A AAY   LGLD  
Sbjct: 1   GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60

Query: 531 ---NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587
               +VL  NRAAC  KL  ++KA  + + A+    G  KA  RR+    K+ + + ++ 
Sbjct: 61  PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120

Query: 588 DYEILKKEAPDDEEVDQALQE 608
           D +      P ++   +AL+ 
Sbjct: 121 DLQRCVSLEPKNKVFQEALRN 141

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 239 NPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDP--- 295
           +     + S         A       E L+  GNE +K G++  ALA Y  A+ +D    
Sbjct: 3   SGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ 62

Query: 296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHF 355
           ++A    N+ A  + L    +A  E  +AI  +    +A +R +    +LG +++A+   
Sbjct: 63  DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122

Query: 356 KHA 358
           +  
Sbjct: 123 QRC 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  123 bits (312), Expect = 2e-31
 Identities = 46/335 (13%), Positives = 96/335 (28%), Gaps = 32/335 (9%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           + + +  +    Y   +F     L    +  DP  AS        L+ L +  E  +   
Sbjct: 21  NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGE-VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT 381
           + + + P    +   +   YL +G   E A  +   A        + +     A +    
Sbjct: 81  KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA------TTL-EKTYGPAWIAYGH 133

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN----GPNF 437
                 + +  +     A          +  +        +  + A+          P  
Sbjct: 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI-GLEYGLTNNSKLAERFFSQALSIAPE- 191

Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497
                        +  ++     V    G ++ A      A ++         V +    
Sbjct: 192 -------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW--- 235

Query: 498 VAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCN 556
                +N G+   K  K++EA   +   L L P N+          S +G FE A++  +
Sbjct: 236 -EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294

Query: 557 AALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI 591
            AL +R   + +      C         +    +I
Sbjct: 295 TALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 30/340 (8%), Positives = 74/340 (21%), Gaps = 51/340 (15%)

Query: 278 GNFA-EALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH 336
           G++   +  +   ++           +                     +  +P +     
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNK-CTDAKRTRDWNTLIQE 395
                 + L +  +  Y           VD+    +  +     C             + 
Sbjct: 61  VHIGTLVELNKANELFYLSHKL------VDLYP-SNPVSWFAVGCYYLMVGHKNEHARRY 113

Query: 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIGN 451
              A        P  +     +     +H +A        +                   
Sbjct: 114 LSKATTLEKTYGP-AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-------------- 158

Query: 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFK 510
              ++            + A     +A      +                    G   F+
Sbjct: 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------------PFVMHEVGVVAFQ 205

Query: 511 QAKFSEAAAAYGDGLGLDPY---------NSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
             ++  A   + D L                 LL N      KL ++ +A++    AL +
Sbjct: 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265

Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
            P  +          + +  +E ++  +        DD  
Sbjct: 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 16/146 (10%), Positives = 39/146 (26%), Gaps = 21/146 (14%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525
              + A+AA   AA+         + +            G           A   +   L
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYI------------GLEYGLTNNSKLAERFFSQAL 186

Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL---------NVRPGYSKARLRRADCF 576
            + P +  ++        + G+++ A +    AL              +           
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246

Query: 577 AKIEKWEASMQDYEILKKEAPDDEEV 602
            K++K+  ++  +       P +   
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNAST 272

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  115 bits (291), Expect = 6e-31
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
           M +       +  GN         +A   Y + + LDP+N VL  NR+A  +K G ++KA
Sbjct: 1   MEQV---NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA 57

Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
            ED    ++++P + K   R+A     + ++E + + YE   K   ++ ++ + LQ 
Sbjct: 58  YEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 84.5 bits (210), Expect = 7e-20
 Identities = 25/94 (26%), Positives = 43/94 (45%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
             LK  GN+    GN  +AL  Y  AI +DP+     SN++AA    G   +A  +  + 
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           + ++P + + + R A     L   E+A   ++  
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 275 YKAGNFAEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH 332
            K G++ +A       + + P+  K   R  K AAL  L R  EA     E ++ E +  
Sbjct: 49  AKKGDYQKAYEDGCKTVDLKPDWGKGYSR--KAAALEFLNRFEEAKRTYEEGLKHEANNP 106

Query: 333 RAHHRLANL 341
           +    L N+
Sbjct: 107 QLKEGLQNM 115

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  117 bits (296), Expect = 7e-30
 Identities = 52/315 (16%), Positives = 90/315 (28%), Gaps = 78/315 (24%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           +  K  GN+ YKA  F EA+  Y+ A  +  +     +N+ AA    G    A+    +A
Sbjct: 6   DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGEYETAISTLNDA 64

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCTDA 383
           +         +  ++  + R+G     +   K          I    KSL  H       
Sbjct: 65  VEQGREMRADYKVISKSFARIGNAYHKLGDLKKT--------IEYYQKSLTEHRT----- 111

Query: 384 KRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDV 439
                                          A+ L KL   ++     +      P    
Sbjct: 112 -------------------------------ADILTKLRNAEKELKKAEAEAYVNPEK-- 138

Query: 440 DETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA 499
                       A    +  +       + +A+ A  +  K+   +             A
Sbjct: 139 ------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------------A 173

Query: 500 AARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
              SN   AL K   F EA A     +  DP        +A  +  + ++  A+E  +AA
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233

Query: 559 LNVRPGYSKARLRRA 573
                  +     R 
Sbjct: 234 RTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 83.4 bits (207), Expect = 4e-18
 Identities = 27/96 (28%), Positives = 44/96 (45%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             E  ++ G E +   ++  A+  Y   I   P  A   SN+ AAL  L    EA+ +C 
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +AI  +P++ RA+ R A   + + E   A+     A
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 34/280 (12%), Positives = 69/280 (24%), Gaps = 75/280 (26%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334
           Y+ G +  A++  + A+       +     + +   +G     + + ++ I         
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LT 107

Query: 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQ 394
            HR A++  +L   EK +   +        V+  KA   +    +               
Sbjct: 108 EHRTADILTKLRNAEKELKKAE----AEAYVNPEKA---EEARLE--------------- 145

Query: 395 ETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIG 450
                                +          A     E +K  P               
Sbjct: 146 --------------------GKEYFTKSDWPNAVKAYTEMIKRAPE-------------- 171

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALF 509
           +A     RA        F +A+A   KA ++D N                A      A  
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-------------VRAYIRKATAQI 218

Query: 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFE 549
              +++ A          D   +     R   +      +
Sbjct: 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 28/230 (12%), Positives = 54/230 (23%), Gaps = 63/230 (27%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
                K++     + GN    L      I       +        L  L    + + +  
Sbjct: 71  MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAE 129

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCT 381
               + P            Y    +   A+  +           I    +  + + N+  
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM--------IKRAPEDARGYSNR-- 179

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNF 437
                                            A AL KL    EA    ++ ++  PNF
Sbjct: 180 ---------------------------------AAALAKLMSFPEAIADCNKAIEKDPNF 206

Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487
                             + +A   +A   +  AL  +  A  +D+    
Sbjct: 207 --------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.5 bits (158), Expect = 9e-12
 Identities = 18/137 (13%), Positives = 42/137 (30%), Gaps = 16/137 (11%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
            +F++A+    KA +   +                  +N   A +++ ++  A +   D 
Sbjct: 19  RQFDEAIEHYNKAWELHKD--------------ITYLNNRAAAEYEKGEYETAISTLNDA 64

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
           +             +   +++G     + D    +           R AD   K+   E 
Sbjct: 65  VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEK 123

Query: 585 SMQDYEILKKEAPDDEE 601
            ++  E      P+  E
Sbjct: 124 ELKKAEAEAYVNPEKAE 140

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  112 bits (282), Expect = 2e-29
 Identities = 26/109 (23%), Positives = 52/109 (47%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
             ++ GN  F++  + +A   Y + +  +P ++ L  NRAAC +KL +F+ A++DC   +
Sbjct: 18  MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
            + P + K   R+A     ++ +  +M  Y+         +E     Q 
Sbjct: 78  QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 85.0 bits (211), Expect = 8e-20
 Identities = 26/94 (27%), Positives = 47/94 (50%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
             +K  GNE ++ G++ +A+  Y  AI  +P  A   SN+ A    L     A+ +C E 
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           I++EP + + + R A     + +  KA+  ++ A
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           G +  A+    +A K++  +             A   SN      K  +F  A     + 
Sbjct: 30  GDYPQAMKHYTEAIKRNPKD-------------AKLYSNRAACYTKLLEFQLALKDCEEC 76

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575
           + L+P        +AA    +  + KA++    AL++     +A      C
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  113 bits (284), Expect = 2e-29
 Identities = 28/109 (25%), Positives = 49/109 (44%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
             ++  N  FK   +  A   Y   + L+P N++   NR+    +   +  A+ D   A+
Sbjct: 15  ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
            +   Y K   RRA     + K+ A+++DYE + K  P D++     QE
Sbjct: 75  ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 24/94 (25%), Positives = 47/94 (50%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           E LK   N+ +KA ++  A+  Y  AI ++P+ A Y  N++ A +       A+ +   A
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           I ++  Y + ++R A   + LG+   A+  ++  
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETV 107

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 276 KAGNFAEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR 333
           +   +  AL     AI +D    K  YR  + A+ +ALG+   A+ +    ++++PH   
Sbjct: 59  RTECYGYALGDATRAIELDKKYIKGYYR--RAASNMALGKFRAALRDYETVVKVKPHDKD 116

Query: 334 AHHRLANL--YLRLGEVEKAIYHFKHAGPEADQVDI 367
           A  +       ++    E+AI   +H     D +DI
Sbjct: 117 AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  108 bits (271), Expect = 4e-28
 Identities = 26/108 (24%), Positives = 53/108 (49%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
            AR  G   F ++ +  A  AY + +   P ++    NRAA  +KL  F +AI DCN A+
Sbjct: 6   EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
              P + +A +R+A     ++++ ++++  +  + +  +      A +
Sbjct: 66  EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 87.7 bits (218), Expect = 6e-21
 Identities = 27/94 (28%), Positives = 44/94 (46%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           E  ++ G E +   ++  A+  Y   I   P  A   SN+ AAL  L    EA+ +C +A
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           I  +P++ RA+ R A   + + E   A+     A
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 276 KAGNFAEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR 333
           K  +F EA+A  + AI  DPN  +A  R  K  A IA+     A+     A   +   + 
Sbjct: 50  KLMSFPEAIADCNKAIEKDPNFVRAYIR--KATAQIAVKEYASALETLDAARTKDAEVNN 107

Query: 334 AHHR--LANLYLRLGE 347
                 +  LY +  +
Sbjct: 108 GSSAREIDQLYYKASQ 123

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  108 bits (271), Expect = 6e-28
 Identities = 30/102 (29%), Positives = 48/102 (47%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
             +  GN LF   K+ EAAA YG  +  +P  +V   NRA C  K+ Q E+A+ DC  AL
Sbjct: 11  ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
            +     KA      C  ++E ++ ++ + +     A +   
Sbjct: 71  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 112

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 87.8 bits (218), Expect = 9e-21
 Identities = 25/94 (26%), Positives = 47/94 (50%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           + LK  GN  +    + EA A Y  AI+ +P  A Y +N+    + + +  +A+ +CR A
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           + ++    +AH  L    L +   ++AI + + A
Sbjct: 70  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  105 bits (265), Expect = 3e-27
 Identities = 36/109 (33%), Positives = 54/109 (49%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
             ++ GN   K   F  A   YG  + L+P N+V  CNRAA  SKLG +  A++DC  A+
Sbjct: 14  RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
            + P YSKA  R     + + K   ++  Y+   +  PD+E     L+ 
Sbjct: 74  CIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 35/94 (37%), Positives = 49/94 (52%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           E LK  GNE  K  NF  A+  Y  AI ++P  A Y  N+ AA   LG    AV +C  A
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           I I+P Y +A+ R+      L +  +A+ ++K A
Sbjct: 73  ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 14/117 (11%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
             FE A+    KA + +  N             A    N   A  K   ++ A       
Sbjct: 26  ENFEAAVHFYGKAIELNPAN-------------AVYFCNRAAAYSKLGNYAGAVQDCERA 72

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581
           + +DP  S          S L +  +A+     AL + P     +        K+ +
Sbjct: 73  ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 22/73 (30%), Positives = 35/73 (47%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334
            K GN+A A+   + AI IDP  +        AL +L + +EAV   ++A+ ++P     
Sbjct: 57  SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116

Query: 335 HHRLANLYLRLGE 347
              L    L+L E
Sbjct: 117 KSNLKIAELKLRE 129

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  114 bits (286), Expect = 7e-27
 Identities = 47/321 (14%), Positives = 89/321 (27%), Gaps = 33/321 (10%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             + L    +  +    F + LA+    + IDP          A+L   G   +      
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           + +   P        +   YL + ++ +A  +F  +        +   +   A +     
Sbjct: 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS------STM-DPQFGPAWIGFAHS 416

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG----PNFD 438
                + +  I     A      +      L     ++L     A+E L++         
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGTHLPYLFL-GMQHMQLGNILLANEYLQSSYALFQY-- 473

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
                       +  LL     V       + A+   Q A       +         K  
Sbjct: 474 ------------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE------KPW 515

Query: 499 AAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
           AA  +N G+A  K   +  A  A   GL L   ++ +    A           AI   + 
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

Query: 558 ALNVRPGYSKARLRRADCFAK 578
           +L + P    A         +
Sbjct: 576 SLAISPNEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  101 bits (253), Expect = 1e-22
 Identities = 41/326 (12%), Positives = 96/326 (29%), Gaps = 62/326 (19%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
             L ++G  +    +   A  L      I    +     +      L     A    +EA
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC-YLRGQVYTNLSNFDRAKECYKEA 226

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
           + ++   + A  +L + +L   + E              +++ +      A   +     
Sbjct: 227 LMVDAKCYEAFDQLVSNHLLTADEEWD---------LVLKLNYSTYSKEDAAFLRS---- 273

Query: 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTR 444
                                    +Y L+        + + A++ L +    +      
Sbjct: 274 -------------------------LYMLKLNKTSHEDELRRAEDYLSSINGLE------ 302

Query: 445 FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN 504
                 +++LL+ +A       RF D LA   K  + D  N +V  +             
Sbjct: 303 -----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH------------ 345

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
             +L +  + ++      D +   P  +V           + +  +A    + +  + P 
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405

Query: 565 YSKARLRRADCFAKIEKWEASMQDYE 590
           +  A +  A  FA   + + ++  Y 
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYT 431

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  101 bits (253), Expect = 1e-22
 Identities = 41/339 (12%), Positives = 82/339 (24%), Gaps = 79/339 (23%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334
               +       Y ++I+     +     K   L    R ++ +    + + I+P+    
Sbjct: 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341

Query: 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQ 394
           +          GE  K              VD    +     L                 
Sbjct: 342 YPLHLASLHESGEKNKLYLISNDL------VDRHP-EKAVTWLAV--------------- 379

Query: 395 ETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIG 450
                                   L ++K  EA     ++    P F            G
Sbjct: 380 --------------------GIYYLCVNKISEARRYFSKSSTMDPQF------------G 407

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510
            A +    A      G  + A++A   AA+         + +            G    +
Sbjct: 408 PAWIG--FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL------------GMQHMQ 453

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL-------NVRP 563
                 A         L  Y+ +LL             + AI     AL       +   
Sbjct: 454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513

Query: 564 GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
            ++         + K++ ++A++         + +D  V
Sbjct: 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 39/401 (9%), Positives = 80/401 (19%), Gaps = 51/401 (12%)

Query: 206 NNNTNKNNNRYPNSVMGNVVKKQNDHP----QNHYNYNPPKPASSSSAEPTSLCRALSTR 261
            +         P S+        N        +   Y     ++  S       +   + 
Sbjct: 22  PDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSL 81

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
              + L++  ++      +  A  + +  + I  N               G    A    
Sbjct: 82  SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDA-FWLAQVYCCTGDYARAKCLL 140

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT 381
            +            +  A   ++L + + A+       P       A    +Q       
Sbjct: 141 TKEDLYNRSS-ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD------ 193

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
                               GG      +  L+ +    L     A E  K     D   
Sbjct: 194 --------------------GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK- 232

Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
                               +L     E  L      +     +            + + 
Sbjct: 233 ---------CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF---------LRSL 274

Query: 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
                           A  Y   +     +S LL  +A       +F   +      L +
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334

Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
            P              +  +          L    P+    
Sbjct: 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 5/152 (3%)

Query: 459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR----KAKGVAAARSNGNALFKQAKF 514
           AQV    G +  A   + K    + ++    +             A    G     +   
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE 183

Query: 515 SEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574
             A        G+    + +   R    + L  F++A E    AL V     +A  +   
Sbjct: 184 KNANKLLMQDGGIKL-EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242

Query: 575 CFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
                   E  +         + +D    ++L
Sbjct: 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  108 bits (272), Expect = 4e-26
 Identities = 44/323 (13%), Positives = 89/323 (27%), Gaps = 71/323 (21%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           M  E     G    K  N AEA   ++A     P +     +         +   A+   
Sbjct: 19  MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKC 380
             A  ++P     H  LA  +        A+   +          +  + +  Q      
Sbjct: 79  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW--------LLSQPQYEQLGSVNL 130

Query: 381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPN 436
                  D N                       +       ++++E        L+  PN
Sbjct: 131 QADVDIDDLN--------------------VQSEDFFFAAPNEYRECRTLLHAALEMNPN 170

Query: 437 FDVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQKAAKQDSNNKEVNMV 491
                                +   +L         ++ A A +++A +   ++      
Sbjct: 171 D-------------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------ 205

Query: 492 MRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550
                  A   +  G  L    +  EA  AY   L ++P    ++ N A   S + Q++ 
Sbjct: 206 -------AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258

Query: 551 AIEDCNAALNVRPGYSKARLRRA 573
           A +    A+ ++ G +      +
Sbjct: 259 AAKQLVRAIYMQVGGTTPTGEAS 281

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  105 bits (264), Expect = 4e-25
 Identities = 40/319 (12%), Positives = 87/319 (27%), Gaps = 61/319 (19%)

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337
           G+  +    Y    +           +  +++ L  L EA        +  P    A   
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETR 397
           L        +   AI    HA        +   K +  H                     
Sbjct: 61  LGLTQAENEKDGLAIIALNHA------RML-DPKDIAVHAAL------------------ 95

Query: 398 AAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN----GPNF-DVDETTRFFGPIGNA 452
                            A +    H    A  +L+      P +  +           + 
Sbjct: 96  -----------------AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138

Query: 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQ 511
             +        A   + +    +  A + + N+             A   ++ G      
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPND-------------AQLHASLGVLYNLS 185

Query: 512 AKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571
             +  AAA     + L P ++ L     A  +   + ++A++  N AL++ PGY +    
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 572 RADCFAKIEKWEASMQDYE 590
            A  ++ + +++ + +   
Sbjct: 246 MAVSYSNMSQYDLAAKQLV 264

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 33/288 (11%), Positives = 72/288 (25%), Gaps = 53/288 (18%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             E  + +G    +      A+   + A  +DP   +  +    +         A+   R
Sbjct: 54  REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 113

Query: 323 EAIRIEPHYHRAHHR---------------LANLYLRLGEVEKAIYHFKHAGPEADQVDI 367
             +  +P Y +                       +    E  +       A        +
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA--------L 165

Query: 368 A-KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE 426
                  Q H +       + ++++     R A+    D A Q++      L   ++ QE
Sbjct: 166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA-QLWNKLGATLANGNRPQE 224

Query: 427 A----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQK 477
           A    +  L   P +                   VR   N+A       +++ A   + +
Sbjct: 225 ALDAYNRALDINPGY-------------------VRVMYNMAVSYSNMSQYDLAAKQLVR 265

Query: 478 AAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525
           A               +    +        L    +       Y   +
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 16/110 (14%), Positives = 36/110 (32%)

Query: 249 AEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAAL 308
            +  S+       +D   ++           + E   L  AA+ ++PN A   ++     
Sbjct: 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182

Query: 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
                   A    R A+ + P   +  ++L          ++A+  +  A
Sbjct: 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  107 bits (270), Expect = 1e-25
 Identities = 38/328 (11%), Positives = 86/328 (26%), Gaps = 63/328 (19%)

Query: 273 EDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRIE 328
             + +       A YD     +             +    +  G L  AV     A++ +
Sbjct: 35  HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD 94

Query: 329 PHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD 388
           P +  A   L        +   AI   +        +++ K  +  A +           
Sbjct: 95  PKHMEAWQYLGTTQAENEQELLAISALRRC------LEL-KPDNQTALMAL--------- 138

Query: 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNF-DVDETT 443
                                     A +       ++A     + L+  P +  +    
Sbjct: 139 --------------------------AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172

Query: 444 RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS 503
                              L+   F +       A + D  + +              + 
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID-----------PDVQC 221

Query: 504 N-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR 562
             G       ++ +A   +   L + P + +L     A  +   Q E+A+     AL ++
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281

Query: 563 PGYSKARLRRADCFAKIEKWEASMQDYE 590
           PGY ++R         +     +++ + 
Sbjct: 282 PGYIRSRYNLGISCINLGAHREAVEHFL 309

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  102 bits (255), Expect = 1e-23
 Identities = 45/315 (14%), Positives = 78/315 (24%), Gaps = 57/315 (18%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
            G    + G+   A+ L++AA+  DP                 + L A+   R  + ++P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDW 389
               A   LA  +       +A    +        +                 A      
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDW------LRY-TPAYAHLVTPAEEGAGGAGLG 182

Query: 390 NTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRF 445
            +                         +LL      E        ++  P          
Sbjct: 183 PSK--------------------RILGSLLSDSLFLEVKELFLAAVRLDPTSI------- 215

Query: 446 FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN- 504
                + ++      +    G ++ A+     A     N+                 +  
Sbjct: 216 -----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------------YLLWNKL 257

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           G  L    +  EA AAY   L L P       N       LG   +A+E    ALN++  
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317

Query: 565 YSKARLRRADCFAKI 579
               R         I
Sbjct: 318 SRGPRGEGGAMSENI 332

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 27/97 (27%), Positives = 47/97 (48%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           +DP+    +G     +G + +A+  + AA+S+ PN     +   A L    +  EAV   
Sbjct: 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           R A+ ++P Y R+ + L    + LG   +A+ HF  A
Sbjct: 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 33/287 (11%), Positives = 73/287 (25%), Gaps = 58/287 (20%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             E  + +G    +      A++     + + P+  +       +        +A    R
Sbjct: 97  HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156

Query: 323 EAIRIEPHYHRA---------------HHRLANLYLRLGEVEKAIYHFKHA---GPEADQ 364
           + +R  P Y                    R+    L      +    F  A    P +  
Sbjct: 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 216

Query: 365 VDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH 424
            D                   + +++  +    AA++   +    ++      L   ++ 
Sbjct: 217 PD--------VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY-LLWNKLGATLANGNQS 267

Query: 425 QEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAI 475
           +EA       L+  P +                   +R++ NL       G   +A+   
Sbjct: 268 EEAVAAYRRALELQPGY-------------------IRSRYNLGISCINLGAHREAVEHF 308

Query: 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAY 521
            +A      ++                S    AL    +     AA 
Sbjct: 309 LEALNMQRKSRGPR--GEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 14/152 (9%)

Query: 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA 517
                L  G   +A+   + A +QD  + E    +            G    +  +   A
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL------------GTTQAENEQELLA 117

Query: 518 AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577
            +A    L L P N   L   A   +      +A E     L   P Y+       +   
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177

Query: 578 KIEKWEASMQDYEILKKEAPDD--EEVDQALQ 607
                 +      +L      +  E    A++
Sbjct: 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
           M + +     +  GN+LFKQ  + EA   Y   +   P N V   N+A    KLG++ +A
Sbjct: 1   MSQFE---KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQA 57

Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
           I+ C   L          +R    +  +E  + ++   +I   E  +  E
Sbjct: 58  IQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 99.3 bits (248), Expect = 4e-25
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           E  K  GN  +K G + EA+  YD  I+  P      SNK  ALI LG   +A+  C++ 
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQV 365
           +R          R   L  RL   + A+   +    E D++
Sbjct: 65  LRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDEL 104

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  104 bits (260), Expect = 5e-25
 Identities = 30/102 (29%), Positives = 48/102 (47%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
             +  GN LF   K+ EAAA YG  +  +P  +V   NRA C  K+ Q E+A+ DC  AL
Sbjct: 6   ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
            +     KA      C  ++E ++ ++ + +     A +   
Sbjct: 66  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 27/116 (23%), Positives = 53/116 (45%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           + LK  GN  +    + EA A Y  AI+ +P  A Y +N+    + + +  +A+ +CR A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC 380
           + ++    +AH  L    L +   ++AI + + A   A +  +     + + L   
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  109 bits (273), Expect = 6e-25
 Identities = 44/366 (12%), Positives = 81/366 (22%), Gaps = 52/366 (14%)

Query: 253 SLCRALS-TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
            LC+A   T      +                L +   A  + P++    ++      AL
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA-GPEADQV----- 365
             +   +    +A  + P    A          L  V++ +     A G   DQV     
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333

Query: 366 ----------------DIAKAKSL-----QAHLNKCTDAKRTRDWNTLIQETRAAIAGGA 404
                            + +A  L      A  +     +       L+     A     
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393

Query: 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA 464
           D    I +        L   Q     L        D              +        A
Sbjct: 394 DQVVAIASNG--GKQALETVQRLLPVLCQAHGLTPD----------QVVAIASHDGGKQA 441

Query: 465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG 524
               +  L  + +                    V A  S+           +        
Sbjct: 442 LETVQRLLPVLCQTHGLTPAQ------------VVAIASHDGGKQALETVQQLLPVLCQA 489

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
            GL P   V + +    +  L   ++ +     A  + P    A          +E  + 
Sbjct: 490 HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR 549

Query: 585 SMQDYE 590
            +    
Sbjct: 550 LLPVLC 555

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  108 bits (270), Expect = 2e-24
 Identities = 40/350 (11%), Positives = 76/350 (21%), Gaps = 32/350 (9%)

Query: 253 SLCRALS-TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
            LC+A   T      +                L +   A  + P++    ++      AL
Sbjct: 316 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371
             +   +    +A  + P    A          L  V++ +       P   Q       
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLL-------PVLCQAHGLTPD 427

Query: 372 SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL 431
            + A  +     +       L+                I +        L   Q+    L
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD-GGKQALETVQQLLPVL 486

Query: 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491
                   D              +        A    +  L  + +A     +       
Sbjct: 487 CQAHGLTPD----------QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ------ 530

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
                 V A  SNG                    GL P   V + +    +  L   ++ 
Sbjct: 531 ------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 584

Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
           +     A  +      A          +E  +  +          P    
Sbjct: 585 LPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV 634

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  101 bits (252), Expect = 2e-22
 Identities = 40/349 (11%), Positives = 74/349 (21%), Gaps = 31/349 (8%)

Query: 252 TSLCRALS-TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA 310
             LC+A   T      +                L +   A  + P++    ++      A
Sbjct: 484 PVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 543

Query: 311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA 370
           L  +   +    +A  + P    A          L  V++ +       P   Q      
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL-------PVLCQAHGLTQ 596

Query: 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET 430
             + A  +     +       L+     A          I +        L   Q     
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG-GKQALETVQRLLPV 655

Query: 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490
           L        D              +        A    +  L  + +A            
Sbjct: 656 LCQAHGLTPD----------QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ----- 700

Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550
                  V A  SN                     GL P   V + +    +  L   ++
Sbjct: 701 -------VVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR 753

Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599
            +     A  + P    A          +E  +  +             
Sbjct: 754 LLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ 802

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 99.0 bits (246), Expect = 1e-21
 Identities = 41/341 (12%), Positives = 75/341 (21%), Gaps = 33/341 (9%)

Query: 252 TSLCRALS-TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA 310
             LC+A   T      +   G            L +   A  + P++    ++      A
Sbjct: 518 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 577

Query: 311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA-GPEADQVDIAK 369
           L  +   +    +A  +      A          L  V++ +     A G    QV    
Sbjct: 578 LETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV--- 634

Query: 370 AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE 429
                A  +     +       L+     A     D      A        L   Q    
Sbjct: 635 -----AIASHDGGKQALETVQRLLPVLCQAHGLTPDQV-VAIASNGGGKQALETVQRLLP 688

Query: 430 TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN 489
            L        +              +        A    +  L  + +A     +     
Sbjct: 689 VLCQAHGLTQE----------QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ---- 734

Query: 490 MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFE 549
                   V A  SNG                    GL P   V + +    +  L   +
Sbjct: 735 --------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQ 786

Query: 550 KAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           + +        +      A          +E  +  +    
Sbjct: 787 RLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLC 827

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 85.5 bits (211), Expect = 2e-17
 Identities = 37/324 (11%), Positives = 67/324 (20%), Gaps = 25/324 (7%)

Query: 276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAH 335
                      Y   I+  P              +  R LEA+      +R  P      
Sbjct: 97  HPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTG 156

Query: 336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE 395
             +           +A++  ++A              + A  +     +       L+  
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNA--LTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPV 214

Query: 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLL 455
              A            A        L   Q     L        D              +
Sbjct: 215 LCQAHGLTPAQV-VAIASHDGGKQALETMQRLLPVLCQAHGLPPD----------QVVAI 263

Query: 456 VVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS 515
                   A    +  L  + +A     +             V A  S+G          
Sbjct: 264 ASNIGGKQALETVQRLLPVLCQAHGLTPDQ------------VVAIASHGGGKQALETVQ 311

Query: 516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575
                     GL P   V + +    +  L   ++ +     A  + P    A       
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 371

Query: 576 FAKIEKWEASMQDYEILKKEAPDD 599
              +E  +  +          PD 
Sbjct: 372 KQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 84.3 bits (208), Expect = 4e-17
 Identities = 38/348 (10%), Positives = 73/348 (20%), Gaps = 31/348 (8%)

Query: 253 SLCRALS-TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
            LC+A   T++    +                L +   A  + P +    ++      AL
Sbjct: 587 VLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646

Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371
             +   +    +A  + P    A          L  V++ +       P   Q      +
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL-------PVLCQAHGLTQE 699

Query: 372 SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL 431
            + A  +     +       L+     A     D      A        L   Q     L
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV-VAIASNGGGKQALETVQRLLPVL 758

Query: 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491
                                  +        A    +  L  + +              
Sbjct: 759 CQAHGLTPA----------QVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ------ 802

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
                 V A  SN                     GL     V + +    +  L   ++ 
Sbjct: 803 ------VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRL 856

Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599
           +        + P    A          +E  +  +           D 
Sbjct: 857 LPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQ 904

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 72.4 bits (177), Expect = 2e-13
 Identities = 43/387 (11%), Positives = 81/387 (20%), Gaps = 39/387 (10%)

Query: 217 PNSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYK 276
           P    G+ +  +    +        +P+ +S A    L     ++   E +K        
Sbjct: 16  PRGSSGSSMAARPPRAKPAPRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIK-------- 67

Query: 277 AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH 336
                  +A +  A+          ++  A       L       +  I   P       
Sbjct: 68  -PKVRSTVAQHHEALV---GHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDI 123

Query: 337 RLANLYLRLGEVEKAIYHFKHA-GPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE 395
                        +A+            Q+D  +   +                N L   
Sbjct: 124 VGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNAL--- 180

Query: 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLL 455
           T A +         I +        L   Q     L                       +
Sbjct: 181 TGAPLNLTPAQVVAIASNNG-GKQALETVQRLLPVLCQAHGLTPA----------QVVAI 229

Query: 456 VVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS 515
                   A    +  L  + +A     +             V A  SN           
Sbjct: 230 ASHDGGKQALETMQRLLPVLCQAHGLPPDQ------------VVAIASNIGGKQALETVQ 277

Query: 516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575
                     GL P   V + +    +  L   ++ +     A  + P    A       
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 337

Query: 576 FAKIEKWEASMQDYEILKKEAPDDEEV 602
              +E  +  +          PD    
Sbjct: 338 KQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.8 bits (173), Expect = 8e-13
 Identities = 40/341 (11%), Positives = 85/341 (24%), Gaps = 44/341 (12%)

Query: 252 TSLCRALS-TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA 310
             LC+A   T      +   G            L +   A  +   +    ++      A
Sbjct: 654 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQA 713

Query: 311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA 370
           L  +   +    +A  + P    A          L  V++ +       P   Q      
Sbjct: 714 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL-------PVLCQAHGLTP 766

Query: 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIA------------GGADSA----------- 407
             + A  +     +       L+                     G   A           
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVL 826

Query: 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR 467
            Q + L  + ++ +  +    + L+      V                 V A  +     
Sbjct: 827 CQAHGLTQDQVVAIASNIGGKQALE-----TVQRLLPVLCQDHGLTPDQVVAIASN--IG 879

Query: 468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527
            + AL  +Q+       +  + +     + VA A + G    +  +            GL
Sbjct: 880 GKQALETVQRLLPVLCQDHGLTL----DQVVAIASNGGKQALETVQ--RLLPVLCQDHGL 933

Query: 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568
            P   V + + +  +  L   ++ +        + P    A
Sbjct: 934 TPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVA 974

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 41/355 (11%), Positives = 82/355 (23%), Gaps = 53/355 (14%)

Query: 263  DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
                +                L +   A  + P++    ++      AL  +   +    
Sbjct: 700  QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 759

Query: 323  EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
            +A  + P    A          L  V++ +       P   Q        + A  +    
Sbjct: 760  QAHGLTPAQVVAIASNIGGKQALETVQRLL-------PVLCQDHGLTLAQVVAIASNIGG 812

Query: 383  AKRTRDWNTLIQETRAAIA------------GGADSA-----------PQIYAL---QAE 416
             +       L+     A               G   A            Q + L   Q  
Sbjct: 813  KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872

Query: 417  ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ 476
            A+      ++A ET++      +    +  G   +  + +       A    +  L  + 
Sbjct: 873  AIASNIGGKQALETVQRL----LPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLC 928

Query: 477  KAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLC 536
            +      +             V A  SN                     GL P   V + 
Sbjct: 929  QDHGLTPDQ------------VVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIA 976

Query: 537  NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI 591
            +    +  L      +   + AL      +   L    C       +A  +    
Sbjct: 977  SNGG-KQALESIVAQLSRPDPALA---ALTNDHLVALACLGGRPAMDAVKKGLPH 1027

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  100 bits (250), Expect = 7e-25
 Identities = 33/102 (32%), Positives = 47/102 (46%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
             +S GNA   + ++S+A   Y   L + P N + L NRAA  S  GQ EKA ED   A 
Sbjct: 13  KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72

Query: 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
            V P YSKA  R       +  ++ + + YE   +   +   
Sbjct: 73  VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 89.0 bits (221), Expect = 6e-21
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           + LK  GN       +++A+ LY  A+SI P    Y SN+ AA  A G+  +A  +   A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA-GPEADQVDIAKAKSLQAHLNKCTDA 383
             ++P Y +A  RL      + + + A   ++     E +    A  + L+    K  +A
Sbjct: 72  TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131

Query: 384 KRTRDWNTLIQETRAAIAGGADSAPQIYAL 413
            R  +      +  A  + GA   P + +L
Sbjct: 132 NRGAEPPADDVDDAAGASRGAGGMPDLSSL 161

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 16/139 (11%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
             +  A+    +A      N                 SN   A     +  +AA      
Sbjct: 25  KEYSKAIDLYTQALSIAPAN-------------PIYLSNRAAAYSASGQHEKAAEDAELA 71

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR--ADCFAKIEKW 582
             +DP  S         R  +  ++ A E     +          ++R       KIE+ 
Sbjct: 72  TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131

Query: 583 EASMQDYEILKKEAPDDEE 601
               +       +A     
Sbjct: 132 NRGAEPPADDVDDAAGASR 150

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 96.6 bits (241), Expect = 5e-24
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           GN  +K+  F  A   Y     LDP N   + N+AA   + G + K  E C  A+ V   
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

Query: 565 -------YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600
                   +KA  R  + + K EK++ ++  Y     E    +
Sbjct: 71  NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 87.7 bits (218), Expect = 8e-21
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
              K +GN+ YK  +F  AL  YD A  +DP   +Y +N+ A     G   +    C +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 325 IRIEPH-------YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA 370
           I +            +A+ R+ N Y +  + + AI+ +  +  E    D+ K 
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  100 bits (250), Expect = 1e-23
 Identities = 36/332 (10%), Positives = 81/332 (24%), Gaps = 76/332 (22%)

Query: 268 KIMGNEDYKAGNFAEALALYDAAIS----IDPNKASYRSNKTAALIALGRLLEAVFECRE 323
           +++             LA  +  ++     D  +A     +     +LG    A  +  +
Sbjct: 9   EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ 68

Query: 324 AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCTD 382
           A+ I P      + L     + G  + A   F           +        AHLN+   
Sbjct: 69  ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV--------LELDPTYNYAHLNR--- 117

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFD 438
                                             AL    + + A        ++ PN  
Sbjct: 118 --------------------------------GIALYYGGRDKLAQDDLLAFYQDDPND- 144

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498
                    P  +  L +   +++      + A   +++  ++    +          G 
Sbjct: 145 ---------PFRSLWLYLAEQKLDE-----KQAKEVLKQHFEKSDKEQW---------GW 181

Query: 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
                    + +Q       A   D   L  + S            LG  + A      A
Sbjct: 182 NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241

Query: 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           +                 + + + +  + + +
Sbjct: 242 VANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 92.8 bits (231), Expect = 4e-21
 Identities = 32/296 (10%), Positives = 61/296 (20%), Gaps = 66/296 (22%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             + L   G      G  A A   +  A++I P+     +     L   G    A     
Sbjct: 42  RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCT 381
             + ++P Y+ AH          G  + A                          L    
Sbjct: 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF--------YQDDPNDPFRSLWLYL 153

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
            A++  D     +  +             + +    L  + +                  
Sbjct: 154 -AEQKLDEKQAKEVLKQHFEKSDKEQWG-WNIVEFYLGNISEQ----------------- 194

Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
                                      E   A          +              +  
Sbjct: 195 ------------------------TLMERLKADATDNTSLAEHL-------------SET 217

Query: 502 RSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCN 556
               G           A A +   +  + +N V         S LGQ +  + + +
Sbjct: 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 70.8 bits (174), Expect = 9e-14
 Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 31/211 (14%)

Query: 404 ADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRA 459
           ++++ +   + A  L    + +      ++ L +    D +           A LL  R 
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDE----------RAQLLYERG 50

Query: 460 QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAA 518
            +  + G    A     +A     +                  +  G  L +   F  A 
Sbjct: 51  VLYDSLGLRALARNDFSQALAIRPDM-------------PEVFNYLGIYLTQAGNFDAAY 97

Query: 519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578
            A+   L LDP  +    NR       G+ + A +D  A     P      L       K
Sbjct: 98  EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK 157

Query: 579 IEKWEAS---MQDYEILKKEAPDDEEVDQAL 606
           +++ +A     Q +E   KE      V+  L
Sbjct: 158 LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  100 bits (252), Expect = 3e-23
 Identities = 43/306 (14%), Positives = 81/306 (26%), Gaps = 64/306 (20%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
            G +  K G+    +   +AAI  DP  A                  A+   +  + ++P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCTDAKRTRD 388
           +  +A   LA  Y      + A    K+         I    K      NK         
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNW--------IKQNPKYKYLVKNK--------- 173

Query: 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTR 444
                             +P +    +++ +     +       E      +        
Sbjct: 174 ----------------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI------ 211

Query: 445 FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN 504
                 + +L      +    G F  A+ A   A      +              +  + 
Sbjct: 212 ------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-------------YSLWNR 252

Query: 505 -GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563
            G  L    +  EA  AY   L + P       N       LG + +A+ +   AL+++ 
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312

Query: 564 GYSKAR 569
                +
Sbjct: 313 KSRNQQ 318

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  100 bits (251), Expect = 4e-23
 Identities = 41/335 (12%), Positives = 88/335 (26%), Gaps = 64/335 (19%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           M          E       + +   Y                +    +  G L   +   
Sbjct: 29  MARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFM 88

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT 381
             AI  +P    A   L          + AI   +        +++ +  +L+A +    
Sbjct: 89  EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC------LEL-QPNNLKALMAL-- 139

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNF 437
                                            A +       Q+A       +K  P +
Sbjct: 140 ---------------------------------AVSYTNTSHQQDACEALKNWIKQNPKY 166

Query: 438 DVDETTRFFGPIGNANLLVVRAQVNL-ACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK 496
                         +  L  R   +       E       +AA Q+ +  +         
Sbjct: 167 K-----YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID--------- 212

Query: 497 GVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDC 555
                ++  G       +F+ A  A+   L + P +  L     A  +   + E+A+E  
Sbjct: 213 --PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270

Query: 556 NAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
             AL ++PG+ ++R         +  +  ++ ++ 
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 26/97 (26%), Positives = 47/97 (48%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           +DP+    +G   + +G F  A+  ++AA+++ P   S  +   A L    R  EAV   
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
             A+ I+P + R+ + L    + LG   +A+ +F  A
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 38/326 (11%), Positives = 73/326 (22%), Gaps = 74/326 (22%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D E  + +G    +  N   A+      + + PN          +        +A    +
Sbjct: 98  DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
             I+  P Y                + K+                   + ++    +   
Sbjct: 158 NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS------------VLEGVKELYLE--- 202

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFD 438
                          AA   G    P +            +   A    +  L   P   
Sbjct: 203 ---------------AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED- 246

Query: 439 VDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQKAAKQDSNNKEVNMVMR 493
                                   L        R E+A+ A  +A +             
Sbjct: 247 ------------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-------- 280

Query: 494 KAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552
                  +R N G +      + EA + +   L L   +           S  G    A+
Sbjct: 281 -----IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS--GNIWAAL 333

Query: 553 EDCNAALNVRPGYSKARLRRADCFAK 578
               + ++    +  A L   D   +
Sbjct: 334 RIALSLMDQPELFQAANLGDLDVLLR 359

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 12/129 (9%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525
           G     +  ++ A  QD  + E    +            G    +      A  A    L
Sbjct: 79  GDLPVTILFMEAAILQDPGDAEAWQFL------------GITQAENENEQAAIVALQRCL 126

Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS 585
            L P N   L   A   +     + A E     +   P Y      +        +   S
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186

Query: 586 MQDYEILKK 594
             D  +L+ 
Sbjct: 187 PVDSSVLEG 195

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 93.1 bits (232), Expect = 8e-23
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
           A +  GNA +KQ  F +A   Y   + LDP N     N+AA   +  +F + ++ C  A+
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69

Query: 560 NVRP-------GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
            V           +KA  R  + F K      ++Q +     E   D E+ + ++E
Sbjct: 70  EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKE 124

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
              K +GN  YK  +F +A   YD AI +DP+  ++ +NK A      +  E V  C +A
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 325 IRIEPH-------YHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           + +            +A  R  N + +  ++  A+  F  +
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 36/133 (27%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG------------------LDPYNSVLL 535
           K K V A R  GN LF Q  + EA  AY D L                   LD  N  L 
Sbjct: 7   KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY 66

Query: 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595
            N + C   +G   +A E  +  L       KA  RRA       K + + +D ++L + 
Sbjct: 67  ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126

Query: 596 APDDEEVDQALQE 608
            P    V     +
Sbjct: 127 HPAAASVVAREMK 139

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAIS------------------IDPNKASYRSNKTA 306
           E L+  GNE +   ++ EA+  Y  A++                  +D       +N + 
Sbjct: 12  EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ 71

Query: 307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
             + +G L EA     E ++ E    +A  R A   +   ++++A    K  
Sbjct: 72  CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 93.3 bits (233), Expect = 1e-21
 Identities = 40/316 (12%), Positives = 84/316 (26%), Gaps = 90/316 (28%)

Query: 281 AEALALYDAAISIDPNKASYRSNKTAAL----IALGRLLEAVFECREAIRIEPHYHRAHH 336
             +   +  +  + P  +   S             G   +A     +AI         + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTLIQE 395
             ANL   + E+E+A+  +  A        +   + +  A+                   
Sbjct: 62  NFANLLSSVNELERALAFYDKA--------LELDSSAATAYYGA---------------- 97

Query: 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIGN 451
                                  +    ++EA    ++ L+ G                 
Sbjct: 98  -------------------GNVYVVKEMYKEAKDMFEKALRAGMEN-------------- 124

Query: 452 ANLLVVRAQVNLAC-----GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-G 505
                      L        + + AL  +Q+A + + N+               AR   G
Sbjct: 125 -----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-------------TEARFQFG 166

Query: 506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565
             L  +    EA + +      DP ++    N     +     EKA+E  + A++++P +
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

Query: 566 SKARLRRADCFAKIEK 581
             A   +         
Sbjct: 227 MLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 36/297 (12%), Positives = 77/297 (25%), Gaps = 86/297 (28%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           M   T         + G++ +A   +  AI  +   A    N    L ++  L  A+   
Sbjct: 21  MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFY 80

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLNKC 380
            +A+ ++     A++   N+Y+     ++A   F+ A        +    ++        
Sbjct: 81  DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA--------LRAGMENGDLFYML- 131

Query: 381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNGPN 436
                                                L+KL + + A       ++   N
Sbjct: 132 ----------------------------------GTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 437 FDVDETTRFFGPIGNANLLVVRAQVNLA-----CGRFEDALAAIQKAAKQDSNNKEVNMV 491
                                 A+          G  ++AL+      +QD  +      
Sbjct: 158 D-------------------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ 192

Query: 492 MRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547
                  A A  N G     +    +A       + + P + + L  +         
Sbjct: 193 -------ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.6 bits (174), Expect = 8e-14
 Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 32/192 (16%)

Query: 404 ADSAPQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRA 459
           +  A      Q     +   +++A     + ++                   A   +  A
Sbjct: 19  SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED--------------AIPYINFA 64

Query: 460 QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAA 518
            +  +    E ALA   KA + DS+              A A    GN    +  + EA 
Sbjct: 65  NLLSSVNELERALAFYDKALELDSSA-------------ATAYYGAGNVYVVKEMYKEAK 111

Query: 519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578
             +   L     N  L         KL Q + A+     A+ +    ++AR +   C A 
Sbjct: 112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171

Query: 579 IEKWEASMQDYE 590
               + ++  + 
Sbjct: 172 EGMLDEALSQFA 183

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 65.2 bits (160), Expect = 5e-12
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 16/127 (12%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEV--NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD 523
             +++A    +KA +    N ++   +              G  L K  +   A      
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYML--------------GTVLVKLEQPKLALPYLQR 150

Query: 524 GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWE 583
            + L+  ++        C +  G  ++A+    A     PG++ A       +A  E  E
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210

Query: 584 ASMQDYE 590
            +++  +
Sbjct: 211 KALEMLD 217

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 91.4 bits (227), Expect = 2e-21
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 16/131 (12%)

Query: 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----------------VLLCN 537
           K +     +  GN  FK+ + +EA   Y + L    +                      N
Sbjct: 34  KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93

Query: 538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597
            A C +K   + KAI+  +  L +     KA  +           E + ++        P
Sbjct: 94  LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153

Query: 598 DDEEVDQALQE 608
           ++ ++  + + 
Sbjct: 154 NNLDIRNSYEL 164

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 16/110 (14%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPN----------------KASYRSNKTAAL 308
             +K  GNE +K     EA+  Y  A+    +                + S   N     
Sbjct: 39  FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 98

Query: 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
                  +A+    + ++I+ +  +A ++L    +  G +E+A  +   A
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 28/104 (26%), Positives = 47/104 (45%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
            N  FK   +  A   Y   + L+P N++   NR+    +   +  A+ D   A+ +   
Sbjct: 13  ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 72

Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
           Y K   RRA     + K+ A+++DYE + K  P D++     QE
Sbjct: 73  YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 24/92 (26%), Positives = 47/92 (51%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           E LK   N+ +KA ++  A+  Y  AI ++P+ A Y  N++ A +       A+ +   A
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK 356
           I ++  Y + ++R A   + LG+   A+  ++
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYE 98

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 91.9 bits (228), Expect = 2e-20
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS---------------VLLCNR 538
           K +     +  G   FK+ K+ +A   Y   +    Y S                   N 
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202

Query: 539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598
           A C  KL  F  AIE CN AL +     K   RR +    +  +E +  D++ + +  P+
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262

Query: 599 DEEVDQALQE 608
           ++     L  
Sbjct: 263 NKAAKTQLAV 272

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 15/109 (13%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPN---------------KASYRSNKTAALI 309
             +K  G   +K G + +AL  Y   +S                   + +   N     +
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207

Query: 310 ALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            L     A+  C +A+ ++ +  +   R    +L + + E A   F+  
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 6/131 (4%)

Query: 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFK 510
             +     +   A  +++  ++ ++  +   +   +    +R      A+  N      K
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR-----LASHLNLAMCHLK 208

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570
              FS A  +    L LD  N   L  R      +  FE A  D    L + P    A+ 
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268

Query: 571 RRADCFAKIEK 581
           + A C  +I +
Sbjct: 269 QLAVCQQRIRR 279

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 276 KAGNFAEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR 333
           K   F+ A+   + A+ +D N  K   R  +  A +A+     A  + ++ +++ P+   
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSR--RGEAHLAVNDFELARADFQKVLQLYPNNKA 265

Query: 334 AHHRLANLYLRLGEV---EKAIY 353
           A  +LA    R+      EK +Y
Sbjct: 266 AKTQLAVCQQRIRRQLAREKKLY 288

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 33/338 (9%), Positives = 69/338 (20%), Gaps = 86/338 (25%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           M+ +      +  +K  N+AEA+ +++   +   N     + +      L +   A  + 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 322 ---REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLN 378
                 +               + ++ G+   AI  ++ A      VD      L  +  
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA------VDR-DTTRLDMYGQ 113

Query: 379 KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DETLKNG 434
                                                           A    ++ ++  
Sbjct: 114 I-----------------------------------GSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 435 PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494
                           +  +     Q       +  A ++  K  +   N          
Sbjct: 139 TT--------------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI------- 177

Query: 495 AKGVAAARSNGNALFKQ---AKFSEAAAAYGDGLGLDPYNSVLL--------CNRAACRS 543
                       A   Q    K   A   Y   + +                   A   +
Sbjct: 178 -----GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232

Query: 544 KLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581
                 KA       L + P   KA             
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 22/190 (11%), Positives = 47/190 (24%), Gaps = 33/190 (17%)

Query: 408 PQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL 463
             +    A+ L K + + EA    ++      N              +  +   RA    
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--------------SPYIYNRRAVCYY 48

Query: 464 ACGRFEDALAAIQ---KAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAA 520
              +++ A   I+                               G  L K+ + S A   
Sbjct: 49  ELAKYDLAQKDIETYFSKVNATKAKSADFEYY------------GKILMKKGQDSLAIQQ 96

Query: 521 YGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580
           Y   +  D     +     +     G F  AI+     +       K        +   +
Sbjct: 97  YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156

Query: 581 KWEASMQDYE 590
           ++  +   + 
Sbjct: 157 EYVKADSSFV 166

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 28/228 (12%), Positives = 59/228 (25%), Gaps = 41/228 (17%)

Query: 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA------- 427
                     +  ++   I+      A   +S   IY  +A    +L K+  A       
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-YIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487
              +                    +       ++ +  G+   A+   Q A  +D+   +
Sbjct: 64  FSKVNATKAK--------------SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD 109

Query: 488 V--NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL 545
           +   +              G+  + +  F  A       +     +  +           
Sbjct: 110 MYGQI--------------GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN 155

Query: 546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI---EKWEASMQDYE 590
            ++ KA       L ++P      L RA   A      K   +   YE
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%)

Query: 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596
             A    K   + +AIE  N     +        RRA C+ ++ K++ + +D E    + 
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67

Query: 597 PDDEEVDQA 605
              +     
Sbjct: 68  NATKAKSAD 76

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 87.4 bits (216), Expect = 2e-18
 Identities = 47/325 (14%), Positives = 86/325 (26%), Gaps = 49/325 (15%)

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL-EAVFECREAIRIEPHYHRAHH 336
               + L   +  +     +A     K  AL        EA     +A+++EP    A +
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141

Query: 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQET 396
           +L  +Y + G+V  A   F  A        +   K+  +  N             L Q  
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGA--------LTHCKNKVSLQNLS---------MVLRQLQ 184

Query: 397 RAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLV 456
                                        ++    K     DV +   ++  +GNA  L 
Sbjct: 185 T-----------------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYI-LGNA-YLS 225

Query: 457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFS 515
           +           + AL+A  +A K D                     N       +  + 
Sbjct: 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASS----------NPDLHLNRATLHKYEESYG 275

Query: 516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575
           EA   +     LDP               L +    +E        +       LR A  
Sbjct: 276 EALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHL 335

Query: 576 FA-KIEKWEASMQDYEILKKEAPDD 599
                 +++++      L+ +    
Sbjct: 336 GPCGDGRYQSASGQKMTLELKPLST 360

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 79.3 bits (195), Expect = 8e-16
 Identities = 34/347 (9%), Positives = 79/347 (22%), Gaps = 71/347 (20%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAIS---------IDPNKASYRSNKTAALIALGRLL 315
           + +        +       L      +           + +       K   +     + 
Sbjct: 28  QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ--EEME 85

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGE-VEKAIYHFKHAGPEADQVDIAKAKSLQ 374
           + + +  E +       +A            +   +A      A      V + + + ++
Sbjct: 86  KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA------VKL-EPELVE 138

Query: 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DET 430
           A                                        E   K      A       
Sbjct: 139 AWNQL-----------------------------------GEVYWKKGDVTSAHTCFSGA 163

Query: 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490
           L +  N            +      +     +       D++   + A + D  +     
Sbjct: 164 LTHCKNKVS------LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217

Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD---PYNSVLLCNRAACRSKLGQ 547
                 G A      N         +A +AY     +D     N  L  NRA        
Sbjct: 218 ----ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273

Query: 548 FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594
           + +A+E  + A  + P + + + R       + +  + ++     K 
Sbjct: 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 32/271 (11%), Positives = 69/271 (25%), Gaps = 66/271 (24%)

Query: 263 DPETLKIMGNEDYKAGNF-AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           + + L + G       ++  EA  L   A+ ++P      +         G +  A    
Sbjct: 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160

Query: 322 REAIRIEPHYHRAHHRLANLYLRLG---------EVEKAIYHFKHAGPEADQVDIAKAKS 372
             A+    +   +   L+ +  +L           V  ++   K A      V +     
Sbjct: 161 SGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA------VQM-DVLD 212

Query: 373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK 432
            ++                                    +L           Q+A     
Sbjct: 213 GRSWYIL---------------------------GNAYLSLYFNTGQNPKISQQALSAYA 245

Query: 433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM 492
                D   ++       N +L + RA ++     + +AL    +AA  D    E     
Sbjct: 246 QAEKVDRKASS-------NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE----- 293

Query: 493 RKAKGVAAARSN-GNALFKQAKFSEAAAAYG 522
                    +      L   ++ +    + G
Sbjct: 294 --------PQQREQQLLEFLSRLTSLLESKG 316

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 37/300 (12%), Positives = 71/300 (23%), Gaps = 62/300 (20%)

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA--KAKSLQAHLNKC 380
                E        +L  L          +Y F+ +  E   V+ A  K + +Q  + K 
Sbjct: 35  MMADEEEEAKHVLQKLQGLV-------DRLYCFRDSYFETHSVEDAGRKQQDVQEEMEK- 86

Query: 381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA-----DETLKNGP 435
                       +Q+    +      A Q   L+ +AL     +         + +K  P
Sbjct: 87  -----------TLQQMEEVLGSAQVEA-QALMLKGKALNVTPDYSPEAEVLLSKAVKLEP 134

Query: 436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN---MVM 492
                                   +V    G    A      A     N   +    MV+
Sbjct: 135 EL--------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180

Query: 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS--------VLLCNRAACRSK 544
           R+           +         ++       + +D  +           L         
Sbjct: 181 RQ-------LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN 233

Query: 545 LGQFEKAIEDCNAAL---NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
               ++A+     A              L RA      E +  +++ +       P   E
Sbjct: 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 86.4 bits (213), Expect = 8e-18
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             ++L  + N   + GN  EA+ LY  A+ + P  A+  SN  + L   G+L EA+   +
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           EAIRI P +  A+  + N    + +V+ A+  +  A      + I       AH N  + 
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA------IQI-NPAFADAHSNLASI 120

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN 433
            K + +    I   R A+    D     Y   A  L  +    + DE +K 
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDFP-DAYCNLAHCLQIVCDWTDYDERMKK 170

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 32/204 (15%)

Query: 408 PQIYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL 463
                  A    +    +EA     + L+  P F             ++NL    A V  
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----------AAAHSNL----ASVLQ 54

Query: 464 ACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYG 522
             G+ ++AL   ++A +                  A A SN GN L +      A   Y 
Sbjct: 55  QQGKLQEALMHYKEAIRISPTF-------------ADAYSNMGNTLKEMQDVQGALQCYT 101

Query: 523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582
             + ++P  +    N A+     G   +AI     AL ++P +  A    A C   +  W
Sbjct: 102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161

Query: 583 EASMQDYEILKKEAPDDEEVDQAL 606
               +  + L     D  E ++  
Sbjct: 162 TDYDERMKKLVSIVADQLEKNRLP 185

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.8 bits (162), Expect = 1e-11
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 253 SLCRALSTRMD-PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
               A+       +    MGN   +  +   AL  Y  AI I+P  A   SN  +     
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           G + EA+   R A++++P +  A+  LA+    + +        K  
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.8 bits (162), Expect = 1e-11
 Identities = 40/229 (17%), Positives = 71/229 (31%), Gaps = 33/229 (14%)

Query: 294 DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY 353
            P  A   +N        G + EAV   R+A+ + P +  AH  LA++  + G++++A+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 354 HFKHAGPEADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412
           H+K A        I        A+ N     K  +D    +Q    AI      A   ++
Sbjct: 65  HYKEA--------IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA-DAHS 115

Query: 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL 472
             A          EA  + +       D       P    NL      V      + D  
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDF------PDAYCNLAHCLQIV----CDWTDYD 165

Query: 473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY 521
             ++K     ++  E N                +     +     +  +
Sbjct: 166 ERMKKLVSIVADQLEKNR-------------LPSVHPHHSMLYPLSHGF 201

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 7/174 (4%)

Query: 253 SLCRALSTRMD-PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
              RA+       +    + +    +GN  EA+A Y  A+ + P+      N    L  +
Sbjct: 99  CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158

Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371
               +     ++ + I       +   +        +    + F+ A  E    ++   K
Sbjct: 159 CDWTDYDERMKKLVSIVADQLEKNRLPSVHPH-HSMLYPLSHGFRKAIAER-HGNLCLDK 216

Query: 372 SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ 425
               H               L           +D      +   +++  +H   
Sbjct: 217 INVLHKPPY----EHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPD 266

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 23/96 (23%), Positives = 41/96 (42%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             E L  +G   Y+AG + +A  ++ A   +D   A Y     A   +LG   +A+    
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
               ++ +  R     A  +L+LG+++ A   F  A
Sbjct: 77  YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 16/103 (15%), Positives = 38/103 (36%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           G   ++  K+ +A   +     LD Y++       ACR  LG +E+A++  +    +   
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
             +     A+C  ++   + +   +   +  A      +    
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 12/119 (10%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510
               L          G+++DA    Q     D  +    +              G     
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFL------------GLGACRQS 64

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
              + +A  +Y  G  +D        + A C  +LG  + A     +A  +        
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 8/74 (10%), Positives = 20/74 (27%)

Query: 285 ALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344
                   +  +               G+  +A    +    ++ +  R    L      
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 345 LGEVEKAIYHFKHA 358
           LG  E+A+  + + 
Sbjct: 65  LGLYEQALQSYSYG 78

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY--H 332
              G + +AL  Y     +D N+  +  +     + LG L  A      A  +      H
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122

Query: 333 RAHHRLANLYL 343
            A    A   L
Sbjct: 123 EALAARAGAML 133

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 82.8 bits (204), Expect = 3e-17
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG-----------------LDPYNSVL 534
             +       + +GN+LFK+ K  EA   Y   +                       +  
Sbjct: 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232

Query: 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594
             N AAC  KL ++++AI  CN  L       KA  RR    A++ + +++  D+   +K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292

Query: 595 EAPDDEEVDQALQE 608
            APDD+ + + L+ 
Sbjct: 293 YAPDDKAIRRELRA 306

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 17/111 (15%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPN-----------------KASYRSNKTAA 307
           +  K+ GN  +K     EA+  Y+ AI+   +                 K     N  A 
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239

Query: 308 LIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           LI L R  EA+  C   +  E    +A  R       LG+++ A   F+ A
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 77.9 bits (192), Expect = 4e-17
 Identities = 15/96 (15%), Positives = 25/96 (26%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             + +     + Y  G   EA   +      D     Y     A      +  +A     
Sbjct: 35  MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            A  +  + +          LRL    KA   F+  
Sbjct: 95  VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 15/101 (14%), Positives = 37/101 (36%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
               + + +  EA   +      D YN   +   AA      QF++A +    A  +   
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA 605
                     C  +++    + + +E++ + + D++   +A
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 59.8 bits (145), Expect = 8e-11
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 12/123 (9%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510
             + +   A      GR E+A    +     D  N +  M +                  
Sbjct: 35  MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL------------AAIYQI 82

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570
           + +F +AA  Y     L   +   + +   C+ +L    KA E     +           
Sbjct: 83  KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142

Query: 571 RRA 573
            ++
Sbjct: 143 AQS 145

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 12/80 (15%), Positives = 25/80 (31%)

Query: 279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL 338
           +   + A      +I  +      +        GR+ EA    R     + +       L
Sbjct: 17  DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL 76

Query: 339 ANLYLRLGEVEKAIYHFKHA 358
           A +Y    + ++A   +  A
Sbjct: 77  AAIYQIKEQFQQAADLYAVA 96

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 2/83 (2%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           + + +  +         F +A  LY  A ++  N  +   +     + L   L+A     
Sbjct: 69  NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128

Query: 323 EAIRIEPHYHRAHHRLANLYLRL 345
             I+            A  YL  
Sbjct: 129 LVIQHSNDEK--LKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 10/87 (11%), Positives = 24/87 (27%)

Query: 513 KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572
               + A   D   +       + + A      G+ E+A                  +  
Sbjct: 17  DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL 76

Query: 573 ADCFAKIEKWEASMQDYEILKKEAPDD 599
           A  +   E+++ +   Y +      +D
Sbjct: 77  AAIYQIKEQFQQAADLYAVAFALGKND 103

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 74.6 bits (183), Expect = 5e-16
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 12/143 (8%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525
           G        I    +  S+  E    +                ++   + +A   +    
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSL------------AFNQYQSGXYEDAHXVFQALC 48

Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS 585
            LD Y+S       ACR  +GQ++ AI   +    +     +     A+C  +  +   +
Sbjct: 49  VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108

Query: 586 MQDYEILKKEAPDDEEVDQALQE 608
                + ++   +  E  +    
Sbjct: 109 ESGLFLAQELIANXPEFXELSTR 131

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 72.3 bits (177), Expect = 3e-15
 Identities = 18/96 (18%), Positives = 36/96 (37%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             E L  +    Y++G + +A  ++ A   +D   + +     A   A+G+   A+    
Sbjct: 20  TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
               ++    R     A   L+ GE+ +A      A
Sbjct: 80  YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 9/81 (11%), Positives = 22/81 (27%)

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337
           G              I  +      +        G   +A    +    ++ +  R    
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 338 LANLYLRLGEVEKAIYHFKHA 358
           L      +G+ + AI+ + + 
Sbjct: 61  LGACRQAMGQYDLAIHSYSYG 81

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 20/149 (13%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510
               L   A      G +EDA    Q     D  +    + +            G     
Sbjct: 20  TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL------------GACRQA 67

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570
             ++  A  +Y  G  +D        + A C  + G+  +A      A  +     +   
Sbjct: 68  MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127

Query: 571 RRADCFAKIEKWEASMQDYEILKKEAPDD 599
                 + +E  +        LKKE   +
Sbjct: 128 LSTRVSSMLEAIK--------LKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D      +G      G +  A+  Y     +D  +  +  +    L+  G L EA     
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 323 EAIRIEPHY--HRAHHRLANLYLRLGEVEKAIYH 354
            A  +  +           +  L   +++K + H
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 78.2 bits (192), Expect = 5e-16
 Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 38/295 (12%)

Query: 311 LGRLLEAVFECREAIRIEPHYHRAHHRL-ANLYLRLGEVEKAIYHFKHAGPEADQVDIAK 369
           +G   + + E +      P             YL   +    +   K +     Q     
Sbjct: 12  IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMF 71

Query: 370 AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA-PQIYALQAEALLKLHKHQEAD 428
           A+ L +H             + ++ E    ++   D        + A           A 
Sbjct: 72  AEYLASH----------SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL 121

Query: 429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488
            TL  G                +   + +  Q+ L   R + A   ++K   QD +    
Sbjct: 122 RTLHQG---------------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT 166

Query: 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF 548
            +          A +  +      K  +A   + +         +LL  +AAC    G++
Sbjct: 167 QL----------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216

Query: 549 EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY-EILKKEAPDDEEV 602
           E A      AL+   G+ +  +        + K       Y   LK        +
Sbjct: 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 12/75 (16%), Positives = 24/75 (32%)

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337
               +A  ++              + + A  +A GR   A    +EA+  +  +      
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239

Query: 338 LANLYLRLGEVEKAI 352
           L  L   LG+  +  
Sbjct: 240 LVVLSQHLGKPPEVT 254

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 3/94 (3%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
               L          G +  A  +   A+  D        N       LG+  E      
Sbjct: 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK 356
             ++     HR+H  +     +  + ++ +  + 
Sbjct: 259 SQLK---DAHRSHPFIKEYRAKENDFDRLVLQYA 289

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 30/261 (11%), Positives = 62/261 (23%), Gaps = 74/261 (28%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +   L +  +  +   N   AL       S++       +     L+ L RL  A  E +
Sbjct: 100 NTTFLLMAASIYFYDQNPDAALRTLHQGDSLECM-----AMTVQILLKLDRLDLARKELK 154

Query: 323 EAIRIEPHYHRAHHRLANLYLRLG--EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC 380
           +    +          A + L  G  +++ A Y F+                        
Sbjct: 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ------------------------ 190

Query: 381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD 440
                              +A        +   QA   +   + + A+  L+   + D  
Sbjct: 191 ------------------EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232

Query: 441 ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500
                     +   L+    ++   G+  +         K    +       R       
Sbjct: 233 ----------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA------ 276

Query: 501 ARSNGNALFKQAKFSEAAAAY 521
                    K+  F      Y
Sbjct: 277 ---------KENDFDRLVLQY 288

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 76.0 bits (188), Expect = 7e-16
 Identities = 44/281 (15%), Positives = 76/281 (27%), Gaps = 98/281 (34%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             +    +G + Y  G +  AL L++ A+  +P             + LG +  A+   +
Sbjct: 4   AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

Query: 323 EAIRIEPHYHRAHHRLANLYLRL-----------GEVEKAIYHFKHAGPEADQVDIA-KA 370
             +   P Y   +  L+  Y+ L           G +E+A+   K A             
Sbjct: 64  TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA--------ERVNP 115

Query: 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA--- 427
           +    HL +                                         L +  +A   
Sbjct: 116 RYAPLHLQR-----------------------------------GLVYALLGERDKAEAS 140

Query: 428 -DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQKAAKQ 481
             + L      +                     +  LA      GR ++ALA   KA +Q
Sbjct: 141 LKQALALEDTPE--------------------IRSALAELYLSMGRLDEALAQYAKALEQ 180

Query: 482 DSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAY 521
              +                R    +AL  + K  EAA A 
Sbjct: 181 APKD-------------LDLRVRYASALLLKGKAEEAARAA 208

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 33/231 (14%), Positives = 61/231 (26%), Gaps = 27/231 (11%)

Query: 374 QAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA----DE 429
           Q  L           ++  +     A+        +     A   LKL     A      
Sbjct: 6   QNPLRLGVQLYALGRYDAALTLFERALKENPQDP-EALYWLARTQLKLGLVNPALENGKT 64

Query: 430 TLKNGPNFDVDETTRFFGPIGNA--NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487
            +   P +        +  +  A   L           G  E AL+ ++ A + +     
Sbjct: 65  LVARTPRY-----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-- 117

Query: 488 VNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG 546
                      A      G       +  +A A+    L L+    +     A     +G
Sbjct: 118 -----------APLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR-SALAELYLSMG 165

Query: 547 QFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597
           + ++A+     AL   P     R+R A       K E + +   +      
Sbjct: 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
           +AL+    PE    +       G   EALA Y  A+   P     R    +AL+  G+  
Sbjct: 143 QALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202

Query: 316 EAVFECREAIRIEPHYHRAHH 336
           EA      A  +E H+   HH
Sbjct: 203 EAA----RAAALEHHH--HHH 217

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 13/90 (14%), Positives = 30/90 (33%)

Query: 269 IMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIE 328
             G    KAG +++A+ L +     D        +   A +  G +         ++   
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72

Query: 329 PHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           P   +    L   Y+++ + + A+      
Sbjct: 73  PDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 24/89 (26%), Positives = 41/89 (46%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +G    +   +  A+ L       +P   + R     AL  LGR  EA+   + A+ + P
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +  + H  +A  Y ++G  E+A+ HFK A
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKA 170

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 18/96 (18%), Positives = 32/96 (33%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D +    +G    K G       L + +++  P+     +      + + +   AV    
Sbjct: 41  DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +     P       RL      LG  ++AI  FK A
Sbjct: 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 14/126 (11%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           GR+  A+  +++    D+ +                  + G A  K              
Sbjct: 22  GRYSQAVMLLEQVYDADAFD-------------VDVALHLGIAYVKTGAVDRGTELLERS 68

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
           L   P N  +         ++ +++ A+          P     R R       + +++ 
Sbjct: 69  LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128

Query: 585 SMQDYE 590
           ++  ++
Sbjct: 129 AIDSFK 134

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.5 bits (148), Expect = 7e-11
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           G  +     ++++     +N                 +  G    +  K+  A       
Sbjct: 56  GAVDRGTELLERSLADAPDN-------------VKVATVLGLTYVQVQKYDLAVPLLIKV 102

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
              +P N  +          LG+F++AI+    AL +RP   K     A  + ++ + E 
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162

Query: 585 SMQDYE 590
           ++  ++
Sbjct: 163 ALPHFK 168

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 29/256 (11%), Positives = 62/256 (24%), Gaps = 86/256 (33%)

Query: 291 ISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350
           +  D  +  Y  +K  +    GR  +AV    +    +         L   Y++ G V++
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 351 AIYHFKHAGPEADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQ 409
                + +        +A    +++                                   
Sbjct: 61  GTELLERS--------LADAPDNVKVATVL------------------------------ 82

Query: 410 IYALQAEALLKLHKHQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC 465
                    +++ K+  A     +  +  P                        +  L  
Sbjct: 83  -----GLTYVQVQKYDLAVPLLIKVAEANPIN-------------------FNVRFRLGV 118

Query: 466 -----GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAA 519
                GRF++A+ + + A     N                       +  +  +  EA  
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNE-------------GKVHRAIAFSYEQMGRHEEALP 165

Query: 520 AYGDGLGLDPYNSVLL 535
            +     LD   SV L
Sbjct: 166 HFKKANELDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
            +++ A+  + K A+ +  N                R   G AL    +F EA  ++   
Sbjct: 90  QKYDLAVPLLIKVAEANPIN-------------FNVRFRLGVALDNLGRFDEAIDSFKIA 136

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568
           LGL P    +    A    ++G+ E+A+     A  +  G S  
Sbjct: 137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +G      G F EA+  +  A+ + PN+         +   +GR  EA+   ++A  ++ 
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175

Query: 330 HYHRAHHRLANLY 342
                   LA + 
Sbjct: 176 GASVE---LALVP 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 499 AAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
                + G +  K  ++S+A          D ++  +  +      K G  ++  E    
Sbjct: 8   QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           +L   P   K        + +++K++ ++    
Sbjct: 68  SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
           +G D    V   ++    +K G++ +A+       +         L     + K    + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 585 SMQDYE 590
             +  E
Sbjct: 61  GTELLE 66

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 13/96 (13%), Positives = 28/96 (29%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           D     ++ + +   G+           +++ P      +          R  EA    +
Sbjct: 22  DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +A    P +      L +     G+ E A   +  A
Sbjct: 82  QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 8/153 (5%)

Query: 277 AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH 336
             +    L    AA+   P           A + +G         +  + + P +  A  
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQET 396
           RL  +        +A    + A       D    +     L      +            
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQA------SDA-APEHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 397 RAAIAGGADSAPQIYALQAEALLKLHKHQEADE 429
             A     +  P I A       +L   +  D 
Sbjct: 115 TRAHQLLPEE-PYITAQLLNWRRRLCDWRALDV 146

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 14/142 (9%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
                 L  ++ A +    +               A     +A       +    A   G
Sbjct: 3   ADGPRELLQLRAAVRHRPQD-------------FVAWLMLADAELGMGDTTAGEMAVQRG 49

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
           L L P +   +      R    +  +A      A +  P +    L          + EA
Sbjct: 50  LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109

Query: 585 SMQDYEILKKEAPDDEEVDQAL 606
           +   Y    +  P++  +   L
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQL 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 1/107 (0%)

Query: 252 TSLCRALSTRMD-PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA 310
            ++ R L+     PE +  +G   +     AEA  L   A    P           AL  
Sbjct: 44  MAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED 103

Query: 311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKH 357
            G+   A      A ++ P       +L N   RL +          
Sbjct: 104 AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 21/153 (13%), Positives = 39/153 (25%), Gaps = 12/153 (7%)

Query: 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF 509
            +    ++ A   L  G       A+Q+       + E            A    G   +
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE------------AVARLGRVRW 68

Query: 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
            Q + +EAA          P +  +           GQ E A      A  + P      
Sbjct: 69  TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128

Query: 570 LRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
            +  +   ++  W A       ++         
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 12/92 (13%), Positives = 24/92 (26%)

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570
            A            +   P + V     A     +G            L + PG+ +A  
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 571 RRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
           R        ++   +    +     AP+   +
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 19/156 (12%), Positives = 53/156 (33%), Gaps = 5/156 (3%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV--NMVMRKAKGVAAARSN--GN 506
           + + ++ +    +  G+   A++  ++    + +  E+     + K   +++  +     
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 507 ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566
           A  K   + +A   Y + L   P N   L   A  +   GQ + A+      L +     
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 567 KARLRRADC-FAKIEKWEASMQDYEILKKEAPDDEE 601
            A +   +  +   E+ +  ++            + 
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.9 bits (179), Expect = 6e-15
 Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 19/194 (9%)

Query: 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFF-GPIGNANLLVVRAQVNLAC-----GR 467
           +  A ++  ++ +A    +     ++D T  ++   +   + +  +    LA        
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527
           ++ A    ++  ++  NN +                       + +  +A   Y   L L
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEAC------------AEMQVCRGQEKDALRMYEKILQL 117

Query: 528 DPYNSVLLCNRA-ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM 586
           +  N                Q +K +E     L+       AR R         ++E + 
Sbjct: 118 EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKAR 177

Query: 587 QDYEILKKEAPDDE 600
              + +    P  E
Sbjct: 178 NSLQKVILRFPSTE 191

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAV 318
           ++ +  +    +     K  N+ +A   Y   +   PN            +  G+  +A+
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVE-KAIYHFKHA 358
               + +++E     A+  L N Y    E E K +      
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 1/97 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFEC 321
           + + L+         G   +AL +Y+  + ++ +  +              +  + +   
Sbjct: 87  NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            + +        A +R     L     EKA    +  
Sbjct: 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 11/112 (9%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----------------SYRSNKTA 306
             + +    +   +AG   +A++ +   I+++ ++                    +    
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           A        +A    +E ++  P+        A + +  G+ + A+  ++  
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 2/89 (2%)

Query: 263 DPETLKIMGNEDYKAGN-FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
           +      +GN  Y       + L      +S        R     + +   R  +A    
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEK 350
           ++ I   P    A   L  +     EV +
Sbjct: 181 QKVILRFPSTE-AQKTLDKILRIEKEVNR 208

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 70.5 bits (174), Expect = 8e-15
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +GN  YK G++ EA+  Y  A+ +DP  A    N   A    G   EA+   ++A+ ++P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
               A + L N Y + G+ ++AI +++ A
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +GN  YK G++ EA+  Y  A+ +DP  A    N   A    G   EA+   ++A+ ++P
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
               A + L N Y + G+ ++AI +++ A
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 56.2 bits (137), Expect = 9e-10
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 14/126 (11%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           G +++A+   QKA + D  +             A A  N GNA +KQ  + EA   Y   
Sbjct: 15  GDYDEAIEYYQKALELDPRS-------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 61

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
           L LDP ++    N      K G +++AIE    AL + P  ++A     + + K   ++ 
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121

Query: 585 SMQDYE 590
           +++ Y+
Sbjct: 122 AIEYYQ 127

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.9 bits (123), Expect = 5e-08
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 499 AAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
           A A  N GNA +KQ  + EA   Y   L LDP ++    N      K G +++AIE    
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           AL + P  ++A     + + K   ++ +++ Y+
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           G +++A+   QKA + D  +             A A  N GNA +KQ  + EA   Y   
Sbjct: 49  GDYDEAIEYYQKALELDPRS-------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 95

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563
           L LDP ++    N      K G +++AIE    AL + P
Sbjct: 96  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 302 SNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            N   A    G   EA+   ++A+ ++P    A + L N Y + G+ ++AI +++ A
Sbjct: 5   YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +GN  YK G++ EA+  Y  A+ +DP  A    N   A    G   EA+   ++A+ ++P
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +GN  YK G++ EA+  Y  A+ +DPN A    N   A    G   EA+   ++A+ ++P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +   A + L N Y + G+ ++AI +++ A
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 24/77 (31%), Positives = 38/77 (49%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +GN  YK G++ EA+  Y  A+ +DPN A    N   A    G   EA+   ++A+ ++P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 330 HYHRAHHRLANLYLRLG 346
           +   A   L N   + G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.2 bits (129), Expect = 8e-09
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           G +++A+   QKA + D NN             A A  N GNA +KQ  + EA   Y   
Sbjct: 23  GDYDEAIEYYQKALELDPNN-------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 69

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568
           L LDP N+    N      K G +++AIE    AL + P  ++A
Sbjct: 70  LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 6e-08
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 292 SIDP-NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350
           ++DP N A    N   A    G   EA+   ++A+ ++P+   A + L N Y + G+ ++
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 351 AIYHFKHA 358
           AI +++ A
Sbjct: 62  AIEYYQKA 69

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 499 AAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
           A A  N GNA +KQ  + EA   Y   L LDP N+    N      K G +++AIE    
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
           AL + P  ++A     + + K   ++ +++ Y+
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 37/261 (14%), Positives = 64/261 (24%), Gaps = 65/261 (24%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +  E  +  ++ +A A  + A+  DP        +      L    +A    R+A+ I+P
Sbjct: 14  LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73

Query: 330 HYHRAHHRLAN-LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD 388
                ++     L  RL    +++ +F  A  +             A+LNK         
Sbjct: 74  DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY-----IANLNK--------- 119

Query: 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGP 448
                                          K  +   A+  LK                
Sbjct: 120 --------------------------GICSAKQGQFGLAEAYLKRSLAAQPQ-------- 145

Query: 449 IGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL 508
                     A+  +  G+  DA    +K               +    V  A       
Sbjct: 146 --FPPAFKELARTKMLAGQLGDADYYFKKY--------------QSRVEVLQADDLLLGW 189

Query: 509 FKQAKFSEAAAAYGDGLGLDP 529
                   A AAY     L  
Sbjct: 190 KIAKALGNAQAAYEYEAQLQA 210

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 12/169 (7%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA-LGRLLEAVFEC 321
           +     +            +A   +  A+SI P+ A   +N    L   L R  E++   
Sbjct: 41  NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100

Query: 322 REAIR--IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAKSLQAHLN 378
            +A+     P  + A+        + G+   A  + K +        +A + +   A   
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS--------LAAQPQFPPAFKE 152

Query: 379 KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA 427
                             +   +           L  +    L   Q A
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 39/250 (15%), Positives = 60/250 (24%), Gaps = 43/250 (17%)

Query: 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET 430
           +          +  R +D+         A+     +        AE    L  + +A E+
Sbjct: 6   QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVR-AEIYQYLKVNDKAQES 64

Query: 431 ----LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA------CGRFEDALAAIQKAAK 480
               L   P+                         N          R  +++A   KA  
Sbjct: 65  FRQALSIKPDS-------------------AEINNNYGWFLCGRLNRPAESMAYFDKALA 105

Query: 481 QDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRA 539
             +                 A  N G    KQ +F  A A     L   P         A
Sbjct: 106 DPTYP-----------TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154

Query: 540 ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI-LKKEAPD 598
             +   GQ   A        +         L      AK      +  +YE  L+   P 
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214

Query: 599 DEEVDQALQE 608
            EE+   L  
Sbjct: 215 SEELQTVLTG 224

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 19/149 (12%)

Query: 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY-------------- 521
                 D + K+V+ ++  ++ +   ++ GN  FK   +  A   Y              
Sbjct: 204 DFPEDADVDLKDVDKILLISEDL---KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA 260

Query: 522 --GDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579
              DG  L P     + N  AC+ K+  ++ A++ C  AL + P  +KA  RRA  +  +
Sbjct: 261 EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL 320

Query: 580 EKWEASMQDYEILKKEAPDDEEVDQALQE 608
           ++++ ++ D +  ++ AP+D+ +   L +
Sbjct: 321 KEYDQALADLKKAQEIAPEDKAIQAELLK 349

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 16/110 (14%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAI----------------SIDPNKASYRSNKTAAL 308
           E LK +GN  +K+ N+  A+  Y   +                 + P   S   N  A  
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283

Query: 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           + +     AV  C EA+ I+P   +A +R A  +  L E ++A+   K A
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 43/244 (17%)

Query: 287 YDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG 346
                                 +  G   +A    R+A+ I+P    AH  LA ++    
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS 406
           E + A   ++ A      +    +++ +   N        + +    Q    A       
Sbjct: 86  EPKLADEEYRKA------LAS-DSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS------ 132

Query: 407 APQIYALQAEA-------LLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA 459
              +Y  ++          L++ K  +A E  +     + +            ++ +  A
Sbjct: 133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN----------QPSVALEMA 182

Query: 460 QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAA 519
            +      +  A       A+    N             A +   G  L K  +  + AA
Sbjct: 183 DLLYKEREYVPARQYYDLFAQGGGQN-------------ARSLLLGIRLAKVFEDRDTAA 229

Query: 520 AYGD 523
           +YG 
Sbjct: 230 SYGL 233

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 40/320 (12%), Positives = 82/320 (25%), Gaps = 85/320 (26%)

Query: 300 YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG 359
           +  + ++ L+  G  +       +  +       A+ +L   YL+ G  E+A    + A 
Sbjct: 6   HHHHHSSGLVPRGSHMGDQ-NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKA- 63

Query: 360 PEADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEAL 418
                  +     S  AH                                      A   
Sbjct: 64  -------LEIDPSSADAHAAL-----------------------------------AVVF 81

Query: 419 LKLHKHQEADE----TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFE 469
               + + ADE     L +                        R   N         R+E
Sbjct: 82  QTEMEPKLADEEYRKALASDSRN-------------------ARVLNNYGGFLYEQKRYE 122

Query: 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLD 528
           +A   + +A++     +            +    N G    +  K ++A   +   L L+
Sbjct: 123 EAYQRLLEASQDTLYPE-----------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

Query: 529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD 588
                +    A    K  ++  A +  +         +++ L         E  + +   
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231

Query: 589 YEILKKEAPDDEEVDQALQE 608
              LK+  P   E  +   E
Sbjct: 232 GLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 31/260 (11%), Positives = 76/260 (29%), Gaps = 19/260 (7%)

Query: 229 NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMD-PETLKIMGNEDYKAGNFAEALALY 287
           + H   H++++       S     +  +    R +  +    +G    + GN  +A    
Sbjct: 3   SSHH--HHHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPL 60

Query: 288 DAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE 347
             A+ IDP+ A   +              A  E R+A+  +    R  +           
Sbjct: 61  RKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR 120

Query: 348 VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA 407
            E+A      A  +    + +     +   N    + + +      +    ++    +  
Sbjct: 121 YEEAYQRLLEASQDTLYPERS-----RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175

Query: 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR 467
                + A+ L K  ++  A +                     NA  L++  ++      
Sbjct: 176 SVALEM-ADLLYKEREYVPARQYYDLFAQGGGQ----------NARSLLLGIRLAKVFED 224

Query: 468 FEDALAAIQKAAKQDSNNKE 487
            + A +   +  +    + E
Sbjct: 225 RDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 12/77 (15%), Positives = 16/77 (20%)

Query: 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECRE 323
           P     M +  YK   +  A   YD         A                  A     +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234

Query: 324 AIRIEPHYHRAHHRLAN 340
             R+ P         A 
Sbjct: 235 LKRLYPGSLEYQEFQAE 251

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 282 EALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341
                 +A ++   +    R           +   A+   R A+  +P Y  A   L   
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 342 YLRLGEVEKAIYHFKHAGPEA-DQVDIAKAKSLQAHLNK 379
               G+   A   ++     A  + D    K LQ  L +
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 2/97 (2%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +      +G    +   F  AL    AA+  DP  +         L   G    A     
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 323 EAIRIEPHYH--RAHHRLANLYLRLGEVEKAIYHFKH 357
             +         +    L     RL   +   +H  H
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHH 114

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 14/105 (13%)

Query: 469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGL 527
           +     ++    Q ++N                R   G    +  +F  A       L  
Sbjct: 2   QAITERLEAMLAQGTDN-------------MLLRFTLGKTYAEHEQFDAALPHLRAALDF 48

Query: 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572
           DP  SV            G    A +   + L         ++ +
Sbjct: 49  DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 15/76 (19%), Positives = 23/76 (30%)

Query: 515 SEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574
                     L     N +L        ++  QF+ A+    AAL+  P YS A      
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 575 CFAKIEKWEASMQDYE 590
                     + Q +E
Sbjct: 62  TLQGQGDRAGARQAWE 77

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 73.4 bits (180), Expect = 6e-14
 Identities = 50/331 (15%), Positives = 97/331 (29%), Gaps = 48/331 (14%)

Query: 263 DPETLKIMGNEDYKAGNF---AEALALYDAAISIDPNKASYRSNKTAALIAL----GRLL 315
           +PE    +    Y+  N+     A+     AI ++P+    +      L  +        
Sbjct: 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA---GPEADQV-----DI 367
           E      EA+   P         A  Y R  E +KAI   K A    P    +       
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290

Query: 368 AKAKSLQAHLNKCTDAKRTRDWNTLIQE----TRAAIAGGADSAPQIYALQAEALLKLHK 423
            +AK  Q    +       R    LI       + A     +   ++ ++ A       +
Sbjct: 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF-RVCSILASLHALADQ 349

Query: 424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483
           ++EA+   +   + ++    +    +   N  + +          + A+    +  K + 
Sbjct: 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM------KCEDKAIHHFIEGVKINQ 403

Query: 484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRS 543
            ++E                  + L K AK           L  +  +S  L   A  + 
Sbjct: 404 KSRE-------------KEKMKDKLQKIAKMR---------LSKNGADSEALHVLAFLQE 441

Query: 544 KLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574
              + ++A ED    L        A     +
Sbjct: 442 LNEKMQQADEDSERGLESGSLIPSASSWNGE 472

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 66.9 bits (163), Expect = 8e-12
 Identities = 43/322 (13%), Positives = 108/322 (33%), Gaps = 45/322 (13%)

Query: 306 AALIALGRLLEAVFECREAIRIEPHYHRA--HHRLANLYLRLGEVEKAIYHFKHA----- 358
             +     L +   +       +    +A   + LA L    G+ E A+   + A     
Sbjct: 23  NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82

Query: 359 GPEADQVDIAKAKS------LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412
              ADQ +I    +      +  H+ + +D +   D    + E  ++       +P++  
Sbjct: 83  QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR--IESPELDC 140

Query: 413 LQAEALLKLHK--HQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG 466
            +    LK     ++ A    ++ L+  P            P   + L +   +++    
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKN----------PEFTSGLAIASYRLD-NWP 189

Query: 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG 526
             ++A+  +++A + + +N+ + +++        A        +  +  E      + L 
Sbjct: 190 PSQNAIDPLRQAIRLNPDNQYLKVLL--------ALKLHKMREEGEEEGEGEKLVEEALE 241

Query: 527 LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM 586
             P  + +L + A    +  + +KAIE    AL   P  +    +   C+          
Sbjct: 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR-----AKVF 296

Query: 587 QDYEILKKEAPDDEEVDQALQE 608
           Q   + +       ++ + +  
Sbjct: 297 QVMNLRENGMYGKRKLLELIGH 318

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 42/377 (11%), Positives = 92/377 (24%), Gaps = 76/377 (20%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +   +    +F + +  Y         KA+  +         G+   A+   R+A  +  
Sbjct: 24  LMEGENSLDDFEDKV-FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82

Query: 330 HYHRAHHR---------LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC 380
             H               A +Y  +G +     +        D+V     K    +  + 
Sbjct: 83  QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV-------DKVKHVCEKFSSPYRIES 135

Query: 381 TDAKRTRDWNTL----------IQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE- 429
            +      W  L                A+     +      L A A  +L     +   
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL-AIASYRLDNWPPSQNA 194

Query: 430 ------TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483
                  ++  P+                 L +   ++        +    +++A ++  
Sbjct: 195 IDPLRQAIRLNPDN----------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP 244

Query: 484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAAC-- 541
              +V             RS      ++ +  +A       L   P N+ L C    C  
Sbjct: 245 GVTDVL------------RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292

Query: 542 -----------------RSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
                            R  L     A+     A        +     A   A  +++E 
Sbjct: 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352

Query: 585 SMQDYEILKKEAPDDEE 601
           +   ++    +      
Sbjct: 353 AEYYFQKEFSKELTPVA 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.4 bits (154), Expect = 9e-11
 Identities = 41/314 (13%), Positives = 80/314 (25%), Gaps = 68/314 (21%)

Query: 275 YKAGNFAEALALYDAAISIDPNKAS-YRSNKTAALIALGRLL---------EAVFECREA 324
           Y  G  ++     D    +    +S YR          G             A     +A
Sbjct: 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164

Query: 325 IRIEPHYHRAHHRLANLYLRL---GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT 381
           +  +P        LA    RL      + AI   + A      + +    +    +    
Sbjct: 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA------IRL-NPDNQYLKVLLAL 217

Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
              + R+      E                    E L++        E L+  P      
Sbjct: 218 KLHKMREEGEEEGE-------------------GEKLVE--------EALEKAPG----- 245

Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV--NM-VMRKAKGV 498
                      ++L   A+        + A+  ++KA +   NN  +   +    +AK  
Sbjct: 246 ---------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF 296

Query: 499 AAARSNGNALFKQAK----FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED 554
                  N ++ + K       A A        +     +    A+  +   Q+E+A   
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356

Query: 555 CNAALNVRPGYSKA 568
                +        
Sbjct: 357 FQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 4/107 (3%)

Query: 256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
           RA   ++       M  +         A+A    A   + N     S   +      +  
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351

Query: 316 EAVFECREAIRIEPHYHRA---HHRLANL-YLRLGEVEKAIYHFKHA 358
           EA +  ++    E         H R  N    ++   +KAI+HF   
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 66.7 bits (164), Expect = 1e-13
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +PE   + G   Y AGN+ E++ L++ AI +DP ++ Y   K  AL  L R  EAV    
Sbjct: 5   NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64

Query: 323 EAIRIEPHYHR--AHHRLANLYLRLGEVEKAIYHFKHA 358
             I +    +        A+    +   E      +  
Sbjct: 65  YVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.4 bits (145), Expect = 3e-11
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           G   +    ++E+   +   + LDP  S     +      L ++E+A++  N  +NV   
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72

Query: 565 YSKAR--LRRADCFAKIEKWEASMQDYE 590
                    +AD    IE  E   +  E
Sbjct: 73  EYNKDVWAAKADALRYIEGKEVEAEIAE 100

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEV--NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD 523
           G + +++   +KA + D    +                   G AL+   ++ EA   Y  
Sbjct: 20  GNYTESIDLFEKAIQLDPEESKYWLMK--------------GKALYNLERYEEAVDCYNY 65

Query: 524 GLGL--DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565
            + +  D YN  +   +A     +   E   E   A   +   +
Sbjct: 66  VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.5 bits (122), Expect = 4e-08
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 270 MGNEDYKAGNFAEALALYDAAISI--DPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327
            G   Y    + EA+  Y+  I++  D       + K  AL  +              ++
Sbjct: 46  KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

Query: 328 EPHYH 332
           E H+H
Sbjct: 106 EHHHH 110

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 8/66 (12%), Positives = 21/66 (31%)

Query: 293 IDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
           +          +       G   E++    +AI+++P   +           L   E+A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 353 YHFKHA 358
             + + 
Sbjct: 61  DCYNYV 66

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 11/64 (17%), Positives = 25/64 (39%)

Query: 527 LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM 586
           +   N          +   G + ++I+    A+ + P  SK  L +      +E++E ++
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 587 QDYE 590
             Y 
Sbjct: 61  DCYN 64

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 71.2 bits (174), Expect = 3e-13
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 15/120 (12%)

Query: 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNS---------------VLLCNRAACRSKLGQF 548
            G   FK  K+ +A   YG  +                          N A C  KL ++
Sbjct: 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333

Query: 549 EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
            KA+E C+ AL +     K   RR +    + ++E++  D+E + +  P ++     +  
Sbjct: 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 271 GNEDYKAGNFAEALALYDAAISI---------------DPNKASYRSNKTAALIALGRLL 315
           G   +K G + +A+  Y   +S                +    +   N     + L    
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +AV  C +A+ ++    +  +R     L + E E A   F+  
Sbjct: 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALF 509
              +     +   A  ++   ++ ++          + +          AA  N      
Sbjct: 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL-----LAAFLNLAMCYL 328

Query: 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
           K  ++++A       LGLD  N   L  R   +  + +FE A  D    L V P    AR
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query: 570 LRRADCFAKIEK 581
           L+ + C  K ++
Sbjct: 389 LQISMCQKKAKE 400

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 15/89 (16%), Positives = 27/89 (30%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
            G    K  N AEA   ++A    +P +     +         +   A+     A  ++P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
                H  LA  +        A+   +  
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAW 111

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 12/104 (11%)

Query: 463 LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG 522
           L      +A  A +   +++   +E    +            G    +  K   A  A  
Sbjct: 28  LKLANLAEAALAFEAVCQKEPEREEAWRSL------------GLTQAENEKDGLAIIALN 75

Query: 523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566
               LDP +  +    A   +       A+    A L  +P Y 
Sbjct: 76  HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 15/86 (17%), Positives = 28/86 (32%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           G ++ K A  +EAA A+      +P       +    +++  +   AI   N A  + P 
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83

Query: 565 YSKARLRRADCFAKIEKWEASMQDYE 590
                   A          A++    
Sbjct: 84  DIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             E  + +G    +      A+   + A  +DP   +  +    +         A+   R
Sbjct: 50  REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109

Query: 323 EAIRIEPHYH 332
             +  +P Y 
Sbjct: 110 AWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 303 NKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            +  +++ L  L EA        + EP    A   L        +   AI    HA
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           DP T   +  E  K  N + ALAL++  +  DP+      +       L R  +A+    
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 323 EAIRIEPHYHRAHHR--LANLYLRLGEVEKAIYHF 355
           + I +            L +  L+   +E   +H 
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 14/65 (21%), Positives = 22/65 (33%)

Query: 294 DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY 353
           DP     R       +       A+    E +  +P Y   ++ L  LY RL   + AI 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 354 HFKHA 358
            +   
Sbjct: 63  TYAQG 67

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 499 AAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
              R        K    S A A + + +  DP       +      +L + + AI+    
Sbjct: 7   PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66

Query: 558 ALNVRPGYSKA 568
            + V       
Sbjct: 67  GIEVAREEGTQ 77

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587
           DP +       A    K     +A+      +   P Y          + ++++ + ++ 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 588 DYEILKKEAPDDEEVDQALQE 608
            Y    + A ++    + L E
Sbjct: 63  TYAQGIEVAREEGTQ-KDLSE 82

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
            G       ++  AL  + A   +    +    N       L  + EA      +I  + 
Sbjct: 12  EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           H   A+ +   LY +  + + AI   K A
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 35/162 (21%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
             ++ AL A                        +    N G         +EA  A+   
Sbjct: 20  KDWKGALDAFSAVQDPH----------------SRICFNIGCMYTILKNMTEAEKAFTRS 63

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL-----NVRPGYSKARLR-------- 571
           +  D + +V    R     +  +++ AI+D   AL     N    Y    L+        
Sbjct: 64  INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 123

Query: 572 ---RADCFAKIEKWEASMQDYEILKKEAPDDE--EVDQALQE 608
               A  +AK E+W+ + +   +      +    ++D+A++ 
Sbjct: 124 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC 165

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           G     +  +  A  A+     +   +S +  N     + L    +A +    ++N    
Sbjct: 13  GVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69

Query: 565 YSKARLRRADCFAKIEKWEASMQDYE 590
            + A  +R   + + EK++ +++D +
Sbjct: 70  LAVAYFQRGMLYYQTEKYDLAIKDLK 95

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 30/133 (22%)

Query: 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSE 516
              +        +A  A  ++  +D +              A A    G   ++  K+  
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHL-------------AVAYFQRGMLYYQTEKYDL 89

Query: 517 AAAAYGD----------------GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560
           A     +                GL    +   +L N A   +K  +++KA E    A +
Sbjct: 90  AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149

Query: 561 VRPGYSKARLRRA 573
           ++     +++ +A
Sbjct: 150 MKSEPRHSKIDKA 162

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 19/120 (15%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR--- 326
           +G       N  EA   +  +I+ D + A     +        +   A+ + +EA+    
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102

Query: 327 -------------IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA---GPEADQVDIAKA 370
                         +       + +A +Y +  E +KA      A     E     I KA
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 24/77 (31%), Positives = 38/77 (49%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +GN  YK G++ EA+  Y  A+ +DPN A    N   A    G   EA+   ++A+ ++P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 330 HYHRAHHRLANLYLRLG 346
           +   A   L N   + G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 49.3 bits (119), Expect = 7e-08
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 292 SIDP-NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350
           ++DP N A    N   A    G   EA+   ++A+ ++P+   A + L N Y + G+ ++
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 351 AIYHFKHA 358
           AI +++ A
Sbjct: 62  AIEYYQKA 69

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.0 bits (113), Expect = 5e-07
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 499 AAARSN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
           A A  N GNA +KQ  + EA   Y   L LDP N+    N      K G +++AIE    
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 558 ALNVRPGYSKA 568
           AL + P  ++A
Sbjct: 69  ALELDPNNAEA 79

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 278 GNFAEALALYDAAISI---DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334
           G  A+A+  Y+ AI+      + A       +    LG   +A       ++  P++   
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 335 HHRLANLYLRLGEVEKAIYHFKHA 358
               A +   LG  E+ +      
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKI 87

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 19/126 (15%)

Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDG 524
           G    A+   +KA       K++          A      G+      ++ +A A   +G
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDL----------AECYLGLGSTFRTLGEYRKAEAVLANG 53

Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------YSKARLRRADCFAK 578
           +   P +  L    A     LG++E+ +E     +           Y +A L  AD    
Sbjct: 54  VKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLD- 112

Query: 579 IEKWEA 584
            E W+A
Sbjct: 113 -ETWKA 117

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECRE 323
            E    +G+     G + +A A+    +   PN  + R      L  LGR  + V    +
Sbjct: 27  AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86

Query: 324 AIRIEPH------YHRA 334
            I           Y +A
Sbjct: 87  IIAETSDDETIQSYKQA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 311 LGRLLEAVFECREAIRI---EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           LG   +AV    +AI            +  L + +  LGE  KA     + 
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG 53

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 513 KFSEAAAAYGDGLGL---DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
             ++A   Y   +         +       +    LG++ KA       +   P +   R
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 570 LRRADCFAKIEKWEASMQDYEILKKEAPDDEEV---DQALQ 607
           +  A     + ++E  ++    +  E  DDE +    QA+ 
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 24/234 (10%)

Query: 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTA------ALIALGRLLEAVF 319
              ++G   +  G    +LAL      +      +     +       L A G L  A  
Sbjct: 55  ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 114

Query: 320 ECREAIRIEPHYH--------RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371
              +A ++    H              A L      +++A    +            +  
Sbjct: 115 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174

Query: 372 SLQAHLNKCT----DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA 427
              A L +C+    D    R     ++         +D       ++            A
Sbjct: 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234

Query: 428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ 481
              L++    +                    A+  +  G FE A   +++  + 
Sbjct: 235 ANWLRHTAKPEFANNHFL------QGQWRNIARAQILLGEFEPAEIVLEELNEN 282

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 44/311 (14%), Positives = 79/311 (25%), Gaps = 43/311 (13%)

Query: 277 AGNFAEALALYDAAISIDPNKASY-----RSNKTAALIALGRLLEAVFECREAIRIEPHY 331
            GN  EA  L   A+   P    Y      S     L   G L  ++   ++  ++   +
Sbjct: 27  DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86

Query: 332 H------RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQV------DIAKAKSLQAHL-- 377
                   +  + + +    G ++ A    + A    ++              ++A L  
Sbjct: 87  DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146

Query: 378 --NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435
              +  +A+ +              +       Q  A+  +  L       A   L    
Sbjct: 147 AWARLDEAEAS-----ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201

Query: 436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA 495
           N   +           +N   VR       G    A   ++  AK +  N          
Sbjct: 202 NLLGNGKYH---SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW-- 256

Query: 496 KGVAAARSNGNALFKQAKFSEAAA------AYGDGLGLDPYNSVLLCNRAACRSKLGQFE 549
                AR    A     +F  A             L L    +  L        + G+  
Sbjct: 257 --RNIAR----AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310

Query: 550 KAIEDCNAALN 560
            A      AL 
Sbjct: 311 DAQRVLLDALK 321

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 46/272 (16%), Positives = 85/272 (31%), Gaps = 31/272 (11%)

Query: 307 ALIAL--GRLLEAVFECREAIRIEP---HYHR--AHHRLANLYLRLGEVEKAIYHFKHAG 359
           A +A+  G   EA    + A+   P    Y R  A   L  +    GE+ +++   +   
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80

Query: 360 PEADQVD----IAKAKSLQAHL----NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY 411
             A Q D       +   Q+ +         A  T++     Q               + 
Sbjct: 81  QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQE--KAFQLINEQHLEQLPMHEFLV 138

Query: 412 ALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDA 471
            ++A+ L    +  EA+ + ++G      E    + P      L +  Q +LA G  ++A
Sbjct: 139 RIRAQLLWAWARLDEAEASARSG-----IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193

Query: 472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--- 528
            + + +      N K  +  +  A  V                + AA         +   
Sbjct: 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIY-----WQMTGDKAAAANWLRHTAKPEFAN 248

Query: 529 -PYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
             +      N A  +  LG+FE A        
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 11/124 (8%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG---RLLEAVF 319
           + E   ++G       +++ +L  Y  A+ +    A   +     L          +   
Sbjct: 43  NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102

Query: 320 ECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA---GPEADQVD-----IAKAK 371
              +A+ ++ +   A   LA+         +AI  ++                  I  AK
Sbjct: 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAK 162

Query: 372 SLQA 375
            LQ 
Sbjct: 163 LLQR 166

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 9/119 (7%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510
           N+    +  +  L    + ++L A ++A +    N E+      A               
Sbjct: 43  NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL----YAALATVLYYQAS----- 93

Query: 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
           Q   ++  A     L LD      L   A+       + +AIE     +++        
Sbjct: 94  QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 55/364 (15%), Positives = 105/364 (28%), Gaps = 80/364 (21%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISID----PNKASYRSNKTAALIALGRLLEAVFE 320
             L + G    K+G+    ++ ++AA+ +        ++  S    A   L    +A+  
Sbjct: 6   LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 65

Query: 321 CREAIRI------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA----GPEADQVDIAKA 370
               + +      +    +A   L N    LG  ++AI   +          D+V  A+A
Sbjct: 66  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125

Query: 371 --------KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQA-EALLKL 421
                    +                   +    +AA+             +    +  L
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD---------LYEENLSLVTAL 176

Query: 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK- 480
                      N               +GN +            G F DA+ A ++    
Sbjct: 177 GDRAAQGRAFGN---------------LGNTH----YLL-----GNFRDAVIAHEQRLLI 212

Query: 481 -QDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLD------PYNS 532
            ++  +K              A SN GNA     +F  A+  Y   L L          +
Sbjct: 213 AKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263

Query: 533 VLLCNRAACRSKLGQFEKAIEDCNAALNV------RPGYSKARLRRADCFAKIEKWEASM 586
               +     + L  +EKAI+     L +      R G  +A     + +  +   + +M
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323

Query: 587 QDYE 590
              E
Sbjct: 324 HFAE 327

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 59/383 (15%), Positives = 113/383 (29%), Gaps = 83/383 (21%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISI----DPNKASYRSNKTAALIALGRLLEAVFE 320
             L + G    K+G+    ++ ++AA+ +        ++  S    A   L    +A+  
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69

Query: 321 CREAIRI------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA----GPEADQVDIAKA 370
               + +      +    +A   L N    LG  ++AI   +          D+V  A+A
Sbjct: 70  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 371 --------KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK-L 421
                    +                   +    +AA+          +  +  +L+  L
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD---------FYEENLSLVTAL 180

Query: 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK- 480
                      N               +GN +            G F DA+ A ++    
Sbjct: 181 GDRAAQGRAFGN---------------LGNTH----YLL-----GNFRDAVIAHEQRLLI 216

Query: 481 -QDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGLGLD------PYNS 532
            ++  +K              A SN GNA     +F  A+  Y   L L          +
Sbjct: 217 AKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267

Query: 533 VLLCNRAACRSKLGQFEKAIEDCNAALNV------RPGYSKARLRRADCFAKIEKWEASM 586
               +     + L  +EKAI+     L +      R G  +A     + +  +   + +M
Sbjct: 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327

Query: 587 QDYE---ILKKEAPDDEEVDQAL 606
              E    + +E  D      A 
Sbjct: 328 HFAEKHLEISREVGDKSGELTAR 350

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 37/295 (12%), Positives = 66/295 (22%), Gaps = 72/295 (24%)

Query: 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337
            + A +L L+    + D +          A I   R  +                 +   
Sbjct: 20  MSEARSLDLFTEITNYDESAC-------DAWIGRIRCGDTDRVTLFRA------WYSRRN 66

Query: 338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETR 397
              L   +      +      G     +       L   +                    
Sbjct: 67  FGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGF------------------ 108

Query: 398 AAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457
                            A        + +A E L+  P    +    +           +
Sbjct: 109 -----------------AACEAAQGNYADAMEALEAAPVAGSEHLVAW-----------M 140

Query: 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA 517
           +A V  A  R+ D +  ++ A K             K    AA  ++G A    A F+EA
Sbjct: 141 KAVVYGAAERWTDVIDQVKSAGKWPD----------KFLAGAAGVAHGVAAANLALFTEA 190

Query: 518 AAAYGDGLGLDPYNSV---LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
                +        +    +    A  R   G    A+          P    A 
Sbjct: 191 ERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAA 245

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 71/326 (21%)

Query: 266 TLKIMGNEDYKAGNFAEALALYDAAISI----DPNKASYRSNKTAALIALGRLLEAVFEC 321
            L + G     AG+    +A + AAI          ++  S    A   LG   +A+   
Sbjct: 50  ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYH 109

Query: 322 REAIRI------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA-------GPEADQVDIA 368
           +  + +           ++   L N    +G  ++A    +         G   D++   
Sbjct: 110 KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG---DRLSEG 166

Query: 369 KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY--ALQ-AEALLKLHKHQ 425
           +A     +L     AK          +    +      A + Y   L+    L    +  
Sbjct: 167 RA---LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGA 221

Query: 426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK--QDS 483
           +      N               +GN              G F+ A+   Q+  +  ++ 
Sbjct: 222 QGR-ACGN---------------LGNTY----YLL-----GDFQAAIEHHQERLRIAREF 256

Query: 484 NNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAYGDGL------GLDPYNSVLLC 536
            ++              A SN GN+     +F +AA  Y   L      G     +    
Sbjct: 257 GDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307

Query: 537 NRAACRSKLGQFEKAIEDCNAALNVR 562
           +     + L +F  AIE  N  L + 
Sbjct: 308 SLGNTYTLLHEFNTAIEYHNRHLAIA 333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 278 GNFAEALALYDAAISI------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY 331
           G+       +D             +     + +   L   G     V   + AI+     
Sbjct: 22  GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED 81

Query: 332 HR----AHHRLANLYLRLGEVEKAIYHFKHA 358
            R     + +L N Y  LG+  KA+ + KH 
Sbjct: 82  LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 303 NKTAALIALGRLLEAVFECREAIRIEPH-YHRAHHRLANLYLRLGEVEKAIYHFKHA 358
                LI  G +  A+    E ++ EP     A++ + N Y +LG+ +KA+ +++ A
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYR-SNKTAALIALGRLLEAVFECREAIRIEP 329
             E    G+   AL   +  +  +P            A   LG   +A+   + AI + P
Sbjct: 7   IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66

Query: 330 HYHRAHHR 337
                  R
Sbjct: 67  DSPALQAR 74

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL-CNRAACRSKLGQFEKAIEDCNAALNVR 562
               L  Q     A  A  + L  +P               KLG ++KA+ +  +A+ + 
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 563 PGYSKARLRR 572
           P     + R+
Sbjct: 66  PDSPALQARK 75

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 26/137 (18%), Positives = 45/137 (32%)

Query: 272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY 331
                 G   +AL L   AI   P  AS RS+    L   G    A  +  ++I++ P Y
Sbjct: 5   KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64

Query: 332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391
                +L +L       +        A    +  ++ K+           D ++  +   
Sbjct: 65  LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 124

Query: 392 LIQETRAAIAGGADSAP 408
            I+E R      A+   
Sbjct: 125 QIEELRQEKGFLANDTS 141

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 274 DYKAGNFAEALALYDAAISID--PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY 331
                  A      D  +++    N +     K  + +  G+  E+       I +E  +
Sbjct: 251 PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW 310

Query: 332 HRAHHRLANLYLRLGEVEKAIYHFKHA 358
              +  L  +Y   G   +A   +  A
Sbjct: 311 L-NYVLLGKVYEMKGMNREAADAYLTA 336

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 11/96 (11%), Positives = 22/96 (22%), Gaps = 3/96 (3%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
                +I        G   E+    +  I ++ +  +Y           G   EA     
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNY-VLLGKVYEMKGMNREAADAYL 334

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            A  + P             +    V   + +    
Sbjct: 335 TAFNLRPGA--NTLYWIENGIFQTSVPYVVPYLDKF 368

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 11/151 (7%)

Query: 448 PIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA 507
            +  A L +  AQ  L  G +++A A  ++A +                          A
Sbjct: 7   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66

Query: 508 LFKQAKFSEAAAAYGDGLGLDPYNSVL-----------LCNRAACRSKLGQFEKAIEDCN 556
           L     F EA  +    L        L           + +RA     LG+  +A+ +  
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 557 AALNVRPGYSKARLRRADCFAKIEKWEASMQ 587
             + +          +           A + 
Sbjct: 127 KVVEMIEERKGETPGKERMMEVAIDRIAQLG 157

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 23/112 (20%)

Query: 271 GNEDYKAGNFAEALALYDAAISIDPN------------KASYRSNKTAALIALGRLLEAV 318
                 AG + EA A    A+ I                A   +    AL  L    EA+
Sbjct: 18  AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77

Query: 319 FECREAIRIEPH-----------YHRAHHRLANLYLRLGEVEKAIYHFKHAG 359
               +A+                +  A +  A     LG   +A+  FK   
Sbjct: 78  HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 21/167 (12%), Positives = 44/167 (26%), Gaps = 18/167 (10%)

Query: 307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366
            L+  G   +A+   +                A+  L   + E A         E     
Sbjct: 15  ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS 74

Query: 367 IAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE 426
                +      +  ++         ++     +A   D+      L A    ++ + +E
Sbjct: 75  YKSLIAKLELHQQAAESPE-------LKRLEQELAANPDNFELACEL-AVQYNQVGRDEE 126

Query: 427 ADETL----KNGPNFDVDETTR-----FFGPIGNANLLVVRAQVNLA 464
           A E L    K       D   +         +G  N +  + +  L 
Sbjct: 127 ALELLWNILKVNLGAQ-DGEVKKTFMDILSALGQGNAIASKYRRQLY 172

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 17/108 (15%), Positives = 30/108 (27%)

Query: 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558
                  + L +Q + ++A                +   +A C  +  QFE A E     
Sbjct: 7   EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI 66

Query: 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
                  S   L       +       ++  E      PD+ E+   L
Sbjct: 67  PLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 14/131 (10%), Positives = 32/131 (24%), Gaps = 10/131 (7%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA--VFECREAIRI 327
             +E  + G  A+AL +         ++   +  K   L+   +   A  +         
Sbjct: 12  QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71

Query: 328 EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDA---- 383
           +  Y     +L          E      + A    +     +       + +  +A    
Sbjct: 72  DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131

Query: 384 ----KRTRDWN 390
               K      
Sbjct: 132 WNILKVNLGAQ 142

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 3/89 (3%), Positives = 24/89 (26%), Gaps = 6/89 (6%)

Query: 276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAH 335
              + ++ L      ++ D        ++   +         +    + ++ +   +   
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237

Query: 336 HRLANLYLRLGE------VEKAIYHFKHA 358
           ++   +            +E+ + +    
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEM 266

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 16/143 (11%), Positives = 37/143 (25%), Gaps = 22/143 (15%)

Query: 468 FEDALAAIQKAAKQDSNNKEV--NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525
             + +  I    ++   N +V  +                  +      S+      D L
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHR--------------RVLVEWLRDPSQELEFIADIL 193

Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA---R---LRRADCFAKI 579
             D  N     +R     +   ++  ++  +  L      +     R   +     +   
Sbjct: 194 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253

Query: 580 EKWEASMQDYEILKKEAPDDEEV 602
              E  +Q    + K  P +E  
Sbjct: 254 AVLEREVQYTLEMIKLVPHNESA 276

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 11/142 (7%)

Query: 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA 517
              V     R E A    + A + ++ N  V    R                 Q    E 
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-----------SLQKDLHEE 151

Query: 518 AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577
                  +   P N  +  +R      L    + +E     LN       A   R     
Sbjct: 152 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 211

Query: 578 KIEKWEASMQDYEILKKEAPDD 599
           + + W+  +Q  + L KE   +
Sbjct: 212 EFKLWDNELQYVDQLLKEDVRN 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 6/80 (7%), Positives = 21/80 (26%)

Query: 279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL 338
           +  E +    A I   P       ++   +  L    + +    + +  +   + A    
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206

Query: 339 ANLYLRLGEVEKAIYHFKHA 358
             +       +  + +    
Sbjct: 207 QWVIQEFKLWDNELQYVDQL 226

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 8/95 (8%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR------LLEAVFECREAIRIE 328
            +   +   L   D  +  D    S  + +   +           L   V    E I++ 
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270

Query: 329 PHYHRAHHRLANLY--LRLGEVEKAIYHFKHAGPE 361
           PH   A + L  +     L +    +       P 
Sbjct: 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPS 305

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL-EAVFECRE 323
           +          +      A  L   AI ++    +    +   L +L + L E +     
Sbjct: 98  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157

Query: 324 AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            I  +P  ++  H    L   L +  + +      
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 21/110 (19%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR----------LLEAVF 319
              E  +   F +     +     +P  A   +     L+ L +          + EA+ 
Sbjct: 8   TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67

Query: 320 ECREAIRIEPHYHRAHHRLANLYLRLGEV-----------EKAIYHFKHA 358
           +  EA+ I+P    A   + N Y     +           + A   F+ A
Sbjct: 68  KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA 117

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 15/147 (10%), Positives = 38/147 (25%), Gaps = 21/147 (14%)

Query: 221 MGNVVKKQNDHPQ--NHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAG 278
           + N   +  D      H+             +   + R     + P+ L  +     KAG
Sbjct: 228 IANSYDRSGDDQMAVEHFQ------------KAAKVSREKVPDLLPKVLFGLSWTLCKAG 275

Query: 279 NFAEALALYDAAISIDP-NKASYRSNKTAALIALGRLLEAVFECREAIRI------EPHY 331
              +A    +  +         +       L A+ +      +  + +          + 
Sbjct: 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335

Query: 332 HRAHHRLANLYLRLGEVEKAIYHFKHA 358
                  A ++      E+A   ++  
Sbjct: 336 EACARSAAAVFESSCHFEQAAAFYRKV 362

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 13/107 (12%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL-------EA 317
           E    +    Y       ++     A+ I  N   Y      +L  +           +A
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 318 VFECREAIRI------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +     A+ +      +     +   +AN Y R G+ + A+ HF+ A
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 42/311 (13%), Positives = 89/311 (28%), Gaps = 35/311 (11%)

Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA--LGRLLEAVFECREAIRI- 327
           G          E L   +           Y S     +        +EA+   REA +  
Sbjct: 72  GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131

Query: 328 -----EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
                +      H ++A  Y  + +   ++YH   A        +   +++Q+      +
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL---------KLHKHQEADETLKN 433
               + ++  +    AA+    + A  I   +  A+          +    Q A E  + 
Sbjct: 192 YDDFKHYDKALPHLEAAL----ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247

Query: 434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK--QDSNNKEVNMV 491
                  + +R   P     +L   +      G+ + A   I++        ++K    +
Sbjct: 248 -----AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551
               + V            + K  +  + +     L  Y      + AA       FE+A
Sbjct: 303 FLFLQAV------YKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQA 355

Query: 552 IEDCNAALNVR 562
                  L  +
Sbjct: 356 AAFYRKVLKAQ 366

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 46/205 (22%)

Query: 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQV--NLACGRFEDALAAIQKAA 479
           H H   D        F+  E    +  I    L V       N  C   +D   +I    
Sbjct: 2   HHHHHMD--------FETGEHQYQYKDI----LSVFEDAFVDNFDCKDVQDMPKSILS-- 47

Query: 480 KQDSNNKEVNMVMRKAKGVAAARSNGNALF-----KQAKFSEAAAAYGDGLGLDPYNSVL 534
                 +E++ ++     V+        LF     KQ           + L ++ Y  ++
Sbjct: 48  -----KEEIDHIIMSKDAVSGTL----RLFWTLLSKQE--EMVQKFVEEVLRIN-YKFLM 95

Query: 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE---- 590
              +   R         IE  +   N    ++K  + R   + K+ +    ++  +    
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 591 ---------ILKKEAPDDEEVDQAL 606
                     +  +     +V   +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKM 180

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 44/332 (13%), Positives = 86/332 (25%), Gaps = 79/332 (23%)

Query: 270 MGNEDYKAGNFAEALALYDAAISI------DPNKASYRSNKTAALIALGRLLEAVFECRE 323
            G  +     +  A+  +  A S          KA +    + +   + +   ++   R+
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

Query: 324 AIRI-------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAH 376
           A  I            + H   A  +L L + E AI HF+ A         + A++ +  
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKA--------YSMAEAEKQP 220

Query: 377 LNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ---AEALLKLHKHQEADETLKN 433
                          L+  T   I             Q    +A+    +     E    
Sbjct: 221 --------------QLMGRTLYNIG-------LCKNSQSQYEDAIPYFKRAIAVFEESNI 259

Query: 434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK--QDSNNKEVNMV 491
            P                     +  Q++   G+ + A     K     Q + +      
Sbjct: 260 LP--------------SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY--- 302

Query: 492 MRKAKGVAAARSNGNALFKQAKFSEA---AAAYGDGLGLDPYNSVLLCNRAACRSKLGQF 548
                   +      +L+      EA      + +   L         + A    +   F
Sbjct: 303 -------LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNF 355

Query: 549 EKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580
           +KA         VR       ++      +IE
Sbjct: 356 QKASAYFLKVEQVRQ-----LIQGGVSLYEIE 382

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 7/100 (7%)

Query: 266 TLKIMGNEDYKAGNFAEALALYDAAISI----DPNKASYRSNKTAALIALGRLLEAVFEC 321
              ++    YK G   +A   +   ++                  +L   G   EA+   
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325

Query: 322 REAIRIEPHYH---RAHHRLANLYLRLGEVEKAIYHFKHA 358
            + +  +  Y         +A  Y      +KA  +F   
Sbjct: 326 FDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 13/107 (12%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISI-------DPNKASYRSNKTAALIALGRLLEA 317
           E    M    Y       ++     A  I       +       S      + L +  +A
Sbjct: 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203

Query: 318 VFECREAIRI------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           +   ++A  +           R  + +        + E AI +FK A
Sbjct: 204 ISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 13/106 (12%)

Query: 266 TLKIMGNEDYKAGNFAEALALYDAAISI------DPNKASYRSNKTAALIALGRLLEAVF 319
              ++G        F EA A + A             +              G    A  
Sbjct: 28  ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARR 87

Query: 320 ECREAIRI-------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
              E   +               + +A + L  G++  A   ++ +
Sbjct: 88  CFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI------E 328
           ++A ++A A     A ++     +  R         + R  EA    +   +        
Sbjct: 3   FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62

Query: 329 PHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
              HRA H++  +    G  + A   F   
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEE 92

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 266 TLKIMGNEDYKAGNFAEALALYDAAISI-------DPNKASYRSNKTAALIALGRLLEAV 318
            L  +G  +  AGN+  A   +     +           ++         +  G L  A 
Sbjct: 68  ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127

Query: 319 FECREA--IRIEPHYH----RAHHRLANLYLRLGEVEKAIYHFKHA 358
            E  ++     +         A   L +L  +   + +A  H+  A
Sbjct: 128 QEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 18/114 (15%)

Query: 263 DPETLKIMGN--EDYKA-GNFAEALALYDAAISI---------DPNKASYRSNKTAALIA 310
           DP   K   N    Y   G + +A  LY   ++          + +      +      +
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224

Query: 311 LGRLLEAVFECREAIRIE------PHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
             +  ++          +      P  +     L  LY R G++E A      A
Sbjct: 225 KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 24/127 (18%), Positives = 33/127 (25%), Gaps = 24/127 (18%)

Query: 256 RALSTRM------DPETLKIMGN--EDYKA-GNFAEALALYDAAISI---------DPNK 297
           RAL          DP   K   N    Y   G F +A  LY   ++          D   
Sbjct: 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237

Query: 298 ASYRSNKTAALIALGRLLEAVFECREAIRIE------PHYHRAHHRLANLYLRLGEVEKA 351
                +        G+  +           +      P        L  LY R G+ E A
Sbjct: 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297

Query: 352 IYHFKHA 358
               + A
Sbjct: 298 ETLEEAA 304

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	608
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.93
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.93
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.92
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.86
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.85
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.84
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.83
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.83
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.79
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.78
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.76
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.73
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.72
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.7
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.66
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.65
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.65
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.61
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.58
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.58
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.58
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.57
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.56
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.56
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.56
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.54
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.54
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.51
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.49
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.49
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.47
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.45
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.44
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.43
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.42
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.42
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.4
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.39
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.39
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.38
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.37
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.36
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.34
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.33
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.0
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.97
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.88
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.82
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.64
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.64
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.64
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.59
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.58
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.57
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.48
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.48
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.4
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.4
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.4
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.37
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.09
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.05
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.95
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.8
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.78
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.5
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.46
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.41
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.15
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.14
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.0
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.96
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.8
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.7
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.57
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.53
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.49
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.96
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.92
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.76
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.43
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.35
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.57
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.23
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.2
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.91
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.88
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.74
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.72
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.43
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.17
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.8
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.42
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.33
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.27
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.63
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.63
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.24
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	84.29
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	81.86

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=4.1e-38  Score=328.84  Aligned_cols=359  Identities=18%  Similarity=0.165  Sum_probs=325.4

Q ss_pred             ccccccCccCCCCCCCCc--cccccccccCCCcccccccCCCCCCCCCCcchhHHHHhh--hCCCCHHHHHHHHHHHHHc
Q 040048          202 GVRGNNNTNKNNNRYPNS--VMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRAL--STRMDPETLKIMGNEDYKA  277 (608)
Q Consensus       202 A~~~~~~~~~~~~~~~~a--~lg~i~~~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~  277 (608)
                      |+..+.+++..+|+....  .+|.++....+..                 ++...+...  ..|.++++|+.+|.++...
T Consensus        18 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-----------------~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~   80 (388)
T 1w3b_A           18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD-----------------RSAHFSTLAIKQNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence            555566667777776555  5666554442211                 123333332  3478899999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKH  357 (608)
Q Consensus       278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  357 (608)
                      |++++|+.+|++++.++|++..++..+|.++...|++++|+..|+++++++|+...++..+|.++...|++++|+..|++
T Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048          358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF  437 (608)
Q Consensus       358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  437 (608)
                      ++. .+|++      ...+..++.++...|++++|+..+++++..+|+. ...+..+|.++...|++++|+..|++++..
T Consensus       161 al~-~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          161 AIE-TQPNF------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHH-HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHH-hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            998 88887      6788899999999999999999999999999987 578999999999999999999999999999


Q ss_pred             CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 040048          438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA  517 (608)
Q Consensus       438 ~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA  517 (608)
                      +|++          ..++..+|.++...|++++|+..|+++++.+|+++.++.            .+|.++...|++++|
T Consensus       233 ~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A  290 (388)
T 1w3b_A          233 SPNH----------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC------------NLANALKEKGSVAEA  290 (388)
T ss_dssp             CTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH------------HHHHHHHHHSCHHHH
T ss_pred             CcCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHH
Confidence            9975          889999999999999999999999999999999988875            899999999999999


Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          518 AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       518 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      +.+|+++++.+|.++.++..+|.++...|++++|+..|++++++.|++..++..+|.+|...|++++|+.+|+++++++|
T Consensus       291 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  370 (388)
T 1w3b_A          291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhh
Q 040048          598 DDEEVDQALQ  607 (608)
Q Consensus       598 ~~~~~~~~L~  607 (608)
                      ++.+++..|.
T Consensus       371 ~~~~a~~~lg  380 (388)
T 1w3b_A          371 TFADAYSNMG  380 (388)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHHhHH
Confidence            9999887653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=2.6e-35  Score=302.36  Aligned_cols=333  Identities=20%  Similarity=0.294  Sum_probs=309.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      +++.++.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCc---hhHHHHHH------HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQ---VDIAKAKS------LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL  413 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  413 (608)
                      ...|++++|+..|++++. ..|   .+......      ...+..++..+...|++++|+..+++++...|.. +.++..
T Consensus        82 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~  159 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLK-SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-AELREL  159 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred             HHcCChHHHHHHHHHHHh-cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-hHHHHH
Confidence            999999999999999999 888   65433222      2334556889999999999999999999999987 578999


Q ss_pred             HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048          414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR  493 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  493 (608)
                      +|.++...|++++|+..+++++...|++          ..++..+|.++...|++++|+..|+++++..|++...+..+.
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLKSDN----------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK  229 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCSCC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            9999999999999999999999999875          899999999999999999999999999999999999888777


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV----LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  569 (608)
                      .+..+.....+|.++...|++++|+..|++++...|+++.    ++..+|.++...|++++|+.+|+++++.+|+++.++
T Consensus       230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  309 (359)
T 3ieg_A          230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL  309 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence            7777777788999999999999999999999999999874    466799999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          570 LRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +.+|.++...|++++|+.+|+++++++|++..++..|.
T Consensus       310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~  347 (359)
T 3ieg_A          310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE  347 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            99999999999999999999999999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5.8e-36  Score=312.49  Aligned_cols=328  Identities=17%  Similarity=0.139  Sum_probs=310.1

Q ss_pred             cchhHHHHhh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          249 AEPTSLCRAL--STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       249 ~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      ++|...+..+  ..|.++.++..+|.+++..|++++|+.++++++..+|.++.+|..+|.++...|++++|+..|+++++
T Consensus        16 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   95 (388)
T 1w3b_A           16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR   95 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3445555554  34888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048          327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS  406 (608)
Q Consensus       327 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  406 (608)
                      ++|++..++..+|.++...|++++|+..|++++. .+|+.      ...+..++.++...|++++|+..+++++...|+.
T Consensus        96 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  168 (388)
T 1w3b_A           96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-YNPDL------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF  168 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-HCTTC------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred             cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999998 88887      6778889999999999999999999999999987


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048          407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK  486 (608)
Q Consensus       407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  486 (608)
                       ...+..+|.++...|++++|+..|++++..+|+.          ..++..+|.++...|++++|+..|++++..+|++.
T Consensus       169 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  237 (388)
T 1w3b_A          169 -AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             -HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence             5789999999999999999999999999999975          88999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048          487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  566 (608)
                      .++.            .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+++
T Consensus       238 ~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  305 (388)
T 1w3b_A          238 VVHG------------NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             HHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence            8876            8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .++..+|.++...|++++|+..|+++++++|++..++..|
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T 1w3b_A          306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            9999999999999999999999999999999999887665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=3.1e-34  Score=304.99  Aligned_cols=336  Identities=19%  Similarity=0.291  Sum_probs=311.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      .|.+++.++.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  101 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG  101 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCCchhH---HHHHH------HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048          340 NLYLRLGEVEKAIYHFKHAGPEADQVDI---AKAKS------LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI  410 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~---~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  410 (608)
                      .+|...|++++|+..|++++. .+|.+.   .....      ...++.++..+...|++++|+..+++++...|.. ..+
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~  179 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD-AEL  179 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHH
Confidence            999999999999999999999 888775   32221      1235667888999999999999999999999887 578


Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM  490 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  490 (608)
                      +..+|.+|...|++++|+..|++++...|++          ..++..+|.++...|++++|+..|++++...|++...+.
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  249 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLKNDN----------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA  249 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHH
Confidence            9999999999999999999999999988874          899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048          491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  566 (608)
                      .+..+.....+..+|.++...|++++|+.+|++++...|.++    .++..+|.++...|++++|+..|++++++.|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~  329 (450)
T 2y4t_A          250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV  329 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            776666777777889999999999999999999999999985    4788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      .+|..+|.++...|++++|+.+|+++++++|++..++..|.
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            99999999999999999999999999999999999887664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-31  Score=292.30  Aligned_cols=316  Identities=12%  Similarity=0.043  Sum_probs=265.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-----------------------------------------
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY-----------------------------------------  300 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~-----------------------------------------  300 (608)
                      .++.+|+.+|.++...|++++|+.+|+++++.+|++..+                                         
T Consensus       198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  277 (597)
T 2xpi_A          198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML  277 (597)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence            357889999999999999999999999999988875544                                         


Q ss_pred             ------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          301 ------------------------------RSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK  350 (608)
Q Consensus       301 ------------------------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  350 (608)
                                                    +..+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++
T Consensus       278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  357 (597)
T 2xpi_A          278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK  357 (597)
T ss_dssp             TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence                                          44455555566666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048          351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET  430 (608)
Q Consensus       351 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~  430 (608)
                      |+..+++++. ..|.+      ...+..++..+...|++++|+..|+++++..|.+ ...+..++.+|...|++++|+..
T Consensus       358 A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~  429 (597)
T 2xpi_A          358 LYLISNDLVD-RHPEK------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHSFAIEGEHDQAISA  429 (597)
T ss_dssp             HHHHHHHHHH-HCTTS------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHh-hCccc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence            6666666554 45544      5677778888999999999999999999888876 46788889999999999999999


Q ss_pred             hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048          431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK  510 (608)
Q Consensus       431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~  510 (608)
                      |++++...|++          ..++..+|.++...|++++|+..|+++++..|.+...+.            .+|.++..
T Consensus       430 ~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~  487 (597)
T 2xpi_A          430 YTTAARLFQGT----------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN------------ELGVVAFN  487 (597)
T ss_dssp             HHHHHHTTTTC----------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHH
T ss_pred             HHHHHHhCccc----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHH
Confidence            99988888764          778888999999999999999999999999998887765            89999999


Q ss_pred             cCCHHHHHHHHHHhhcC------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 040048          511 QAKFSEAAAAYGDGLGL------DPYN-SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWE  583 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~  583 (608)
                      .|++++|+.+|+++++.      +|+. ..+|..+|.++...|++++|+..|++++++.|+++.+|..+|.+|...|+++
T Consensus       488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  567 (597)
T 2xpi_A          488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG  567 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred             hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence            99999999999999987      6654 7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          584 ASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       584 ~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|+++|+++++++|+++.++..|.
T Consensus       568 ~A~~~~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          568 LAITHLHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHH
Confidence            999999999999999999887764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=4.2e-32  Score=288.53  Aligned_cols=353  Identities=16%  Similarity=0.138  Sum_probs=298.1

Q ss_pred             ccccCccCCCCCCCCc--cccccccccCCCcccccccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCC
Q 040048          204 RGNNNTNKNNNRYPNS--VMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGN  279 (608)
Q Consensus       204 ~~~~~~~~~~~~~~~a--~lg~i~~~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~  279 (608)
                      ..+.+++..+|.....  .+|.++...                 +...+|...+..++  .|.++.+++.+|.+++..|+
T Consensus        13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~-----------------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~   75 (450)
T 2y4t_A           13 LGTENLYFQSMADVEKHLELGKKLLAA-----------------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK   75 (450)
T ss_dssp             ----------CHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC
Confidence            3345566666665544  555555444                 22223344444442  47789999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHH
Q 040048          280 FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH---RAHHRL------------ANLYLR  344 (608)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l------------a~~~~~  344 (608)
                      +++|+.+|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++.   .++..+            |.++..
T Consensus        76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  155 (450)
T 2y4t_A           76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG  155 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988   776655            667999


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH  424 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~  424 (608)
                      .|++++|+..|++++. ..|.+      ...+..++.++...|++++|+..+++++..+|.. +.++..+|.++...|++
T Consensus       156 ~~~~~~A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  227 (450)
T 2y4t_A          156 SGDYTAAIAFLDKILE-VCVWD------AELRELRAECFIKEGEPRKAISDLKAASKLKNDN-TEAFYKISTLYYQLGDH  227 (450)
T ss_dssp             HTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-HHHHHHHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHHHHH-hCCCC------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCH
Confidence            9999999999999998 88877      5778899999999999999999999999998877 58899999999999999


Q ss_pred             HHHHHHhhcCCCCCCcccccccCCCCcHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048          425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVV------------RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM  492 (608)
Q Consensus       425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  492 (608)
                      ++|+..|++++...|+.          ...+..            +|.++...|++++|+..|++++...|+++....  
T Consensus       228 ~~A~~~~~~~~~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--  295 (450)
T 2y4t_A          228 ELSLSEVRECLKLDQDH----------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV--  295 (450)
T ss_dssp             HHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH--
T ss_pred             HHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH--
Confidence            99999999999998875          444443            499999999999999999999999999876432  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048          493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR  572 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  572 (608)
                            ..+..+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+
T Consensus       296 ------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  369 (450)
T 2y4t_A          296 ------RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL  369 (450)
T ss_dssp             ------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             ------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence                  23458999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH------------HHHcC-----CHHHHHHHHHH-HHHhCCCC
Q 040048          573 ADC------------FAKIE-----KWEASMQDYEI-LKKEAPDD  599 (608)
Q Consensus       573 a~~------------~~~~g-----~~~~A~~~~~~-al~l~P~~  599 (608)
                      +.+            |..+|     +.+++.+.|++ +++..|++
T Consensus       370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~  414 (450)
T 2y4t_A          370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN  414 (450)
T ss_dssp             HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence            955            44445     56788999997 88888874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.9e-31  Score=290.08  Aligned_cols=320  Identities=22%  Similarity=0.227  Sum_probs=265.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      .++.|+.+|..++..|++++|+.+|++++..+|+++.++..+|.+|..+|++++|+..|+++++++|++..+++.+|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            35566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHH------------------------------------------------------------------
Q 040048          343 LRLGEVEKAIYHFK------------------------------------------------------------------  356 (608)
Q Consensus       343 ~~~g~~~~A~~~~~------------------------------------------------------------------  356 (608)
                      ..+|++++|+..|+                                                                  
T Consensus       104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV  183 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred             HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence            77777777766653                                                                  


Q ss_pred             -------------------------------------------HhCCCCCchhHH-HHHHHHHHHHHhHHHHHhhcHHHH
Q 040048          357 -------------------------------------------HAGPEADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTL  392 (608)
Q Consensus       357 -------------------------------------------~al~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~A  392 (608)
                                                                 +++. .+|++.. ......++..++..+...|++++|
T Consensus       184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  262 (537)
T 3fp2_A          184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-ANTVDDPLRENAALALCYTGIFHFLKNNLLDA  262 (537)
T ss_dssp             CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence                                                       3333 3333321 112244677888899999999999


Q ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 040048          393 IQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL  472 (608)
Q Consensus       393 ~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (608)
                      +..+++++...|.  ..++..+|.++...|++++|+..|++++...|++          ..++..+|.++...|++++|+
T Consensus       263 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~  330 (537)
T 3fp2_A          263 QVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY----------PPTYYHRGQMYFILQDYKNAK  330 (537)
T ss_dssp             HHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC----------HHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999998  6889999999999999999999999999999875          889999999999999999999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       473 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  552 (608)
                      ..|++++...|.+..++.            .+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+
T Consensus       331 ~~~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  398 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYI------------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI  398 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            999999999999988776            89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCH------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          553 EDCNAALNVRPGYS------KARLRRADCFAKI----------EKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       553 ~~~~~al~~~p~~~------~a~~~la~~~~~~----------g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ..|++++++.|++.      ..++.+|.++...          |++++|+.+|+++++++|++..++..|.
T Consensus       399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  469 (537)
T 3fp2_A          399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA  469 (537)
T ss_dssp             HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999877653      3467778999999          9999999999999999999998877653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=9.8e-32  Score=292.28  Aligned_cols=339  Identities=14%  Similarity=0.127  Sum_probs=293.0

Q ss_pred             cccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 040048          236 YNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR  313 (608)
Q Consensus       236 y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~  313 (608)
                      +..+......+.+.+|...++..+  .|.++.+++.+|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus        29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  108 (537)
T 3fp2_A           29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN  108 (537)
T ss_dssp             HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence            333333333444444555555543  478899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH------------------------------------------------------------------------
Q 040048          314 LLEAVFEC------------------------------------------------------------------------  321 (608)
Q Consensus       314 ~~eA~~~~------------------------------------------------------------------------  321 (608)
                      +++|+..|                                                                        
T Consensus       109 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (537)
T 3fp2_A          109 FTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN  188 (537)
T ss_dssp             HHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred             HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence            88887655                                                                        


Q ss_pred             -------------------------------------HHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          322 -------------------------------------REAIRIEPHYHR-------AHHRLANLYLRLGEVEKAIYHFKH  357 (608)
Q Consensus       322 -------------------------------------~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~  357 (608)
                                                           +++++.+|++..       ++..+|.++...|++++|+..|++
T Consensus       189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  268 (537)
T 3fp2_A          189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE  268 (537)
T ss_dssp             SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence                                                 333445666643       577888999999999999999999


Q ss_pred             hCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048          358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF  437 (608)
Q Consensus       358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  437 (608)
                      ++. .+|.       ...+..++.++...|++++|+..+++++...|.. +.++..+|.++...|++++|+..|++++..
T Consensus       269 ~~~-~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  339 (537)
T 3fp2_A          269 SIN-LHPT-------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-PPTYYHRGQMYFILQDYKNAKEDFQKAQSL  339 (537)
T ss_dssp             HHH-HCCC-------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHh-cCCC-------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            998 7776       2567788999999999999999999999999987 578999999999999999999999999999


Q ss_pred             CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 040048          438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA  517 (608)
Q Consensus       438 ~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA  517 (608)
                      .|++          ..++..+|.++...|++++|+..|+++++..|++..++.            .+|.++...|++++|
T Consensus       340 ~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          340 NPEN----------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT------------FFAEILTDRGDFDTA  397 (537)
T ss_dssp             CTTC----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH------------HHHHHHHHTTCHHHH
T ss_pred             CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHH
Confidence            8875          788999999999999999999999999999999988876            889999999999999


Q ss_pred             HHHHHHhhcCCCCCH------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          518 AAAYGDGLGLDPYNS------VLLCNRAACRSKL----------GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       518 ~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      +.+|++++...|.+.      ..++.+|.++...          |++++|+.+|+++++.+|++..++..+|.+|..+|+
T Consensus       398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~  477 (537)
T 3fp2_A          398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK  477 (537)
T ss_dssp             HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            999999999876543      3467788999999          999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          582 WEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       582 ~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      +++|+.+|+++++++|++.+....
T Consensus       478 ~~~A~~~~~~al~~~~~~~~~~~~  501 (537)
T 3fp2_A          478 IDEAIELFEDSAILARTMDEKLQA  501 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHH
Confidence            999999999999999999987654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-32  Score=290.50  Aligned_cols=346  Identities=15%  Similarity=0.105  Sum_probs=283.9

Q ss_pred             cchhHHHHhhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048          249 AEPTSLCRALST-RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI  327 (608)
Q Consensus       249 ~~a~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  327 (608)
                      .+|...+...+. .+++.+++.+|.+++..|++++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|++++..
T Consensus        23 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  102 (514)
T 2gw1_A           23 DDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN  102 (514)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            334444444432 2368888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             CCCC----------------------------------------------------------------------------
Q 040048          328 EPHY----------------------------------------------------------------------------  331 (608)
Q Consensus       328 ~p~~----------------------------------------------------------------------------  331 (608)
                      .|.+                                                                            
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (514)
T 2gw1_A          103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE  182 (514)
T ss_dssp             SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCS
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcC
Confidence            6522                                                                            


Q ss_pred             ---HHHHHHHHHHHHH---cCCHHHHHHHHHHhCC-----C-CCchhHH-HHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048          332 ---HRAHHRLANLYLR---LGEVEKAIYHFKHAGP-----E-ADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTLIQETRA  398 (608)
Q Consensus       332 ---~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~-~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  398 (608)
                         ..+++.+|.+++.   .|++++|+..|++++.     . ..|.+.. .......+..++..+...|++++|+..+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  262 (514)
T 2gw1_A          183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK  262 (514)
T ss_dssp             SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               5666777777776   7888888888888764     1 1333321 345578888999999999999999999999


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          399 AIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA  478 (608)
Q Consensus       399 al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  478 (608)
                      ++...|.  ..++..+|.++...|++++|+..+++++...|.+          ..++..+|.++...|++++|+..|+++
T Consensus       263 ~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~  330 (514)
T 2gw1_A          263 AIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN----------SSVYYHRGQMNFILQNYDQAGKDFDKA  330 (514)
T ss_dssp             HHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----------THHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999998  7889999999999999999999999999988875          677888888888888888888888888


Q ss_pred             HHhCCCChHHHHHHHHH----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH---
Q 040048          479 AKQDSNNKEVNMVMRKA----------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV---  533 (608)
Q Consensus       479 l~~~p~~~~~~~~l~~~----------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---  533 (608)
                      +...|.+..++..+..+                      .....+..+|.++...|++++|+.+|++++...|.+..   
T Consensus       331 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  410 (514)
T 2gw1_A          331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV  410 (514)
T ss_dssp             HHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred             HHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence            88888877666544322                      01334678899999999999999999999998887744   


Q ss_pred             ---HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          534 ---LLCNRAACRSK---LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       534 ---~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                         ++..+|.++..   .|++++|+..|++++...|++..++..+|.+|...|++++|+.+|+++++++|++++++..+
T Consensus       411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence               89999999999   99999999999999999999999999999999999999999999999999999999887765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=7e-31  Score=266.33  Aligned_cols=293  Identities=15%  Similarity=0.129  Sum_probs=273.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      +.+++.+..+|..++..|++++|+.+|++++..+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   98 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC   98 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcC-CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048          341 LYLRLG-EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL  419 (608)
Q Consensus       341 ~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~  419 (608)
                      ++...| ++++|+..|++++. .+|.+      ...+..++.++...|++++|+..+++++...|... ..+..+|.++.
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~  170 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATT-LEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-LPMLYIGLEYG  170 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHT-TCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-HHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHH-hCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-HHHHHHHHHHH
Confidence            999999 99999999999999 88887      56788999999999999999999999999998864 56777999999


Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD---------SNNKEVNM  490 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~  490 (608)
                      ..|++++|+..+++++...|++          ..++..+|.++...|++++|+..+++++...         |....++.
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  240 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPED----------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN  240 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence            9999999999999999999985          8999999999999999999999999999986         44455554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048          491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL  570 (608)
Q Consensus       491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  570 (608)
                                  .+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|++..++.
T Consensus       241 ------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  308 (330)
T 3hym_B          241 ------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT  308 (330)
T ss_dssp             ------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred             ------------HHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence                        89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHcCCHH
Q 040048          571 RRADCF-AKIEKWE  583 (608)
Q Consensus       571 ~la~~~-~~~g~~~  583 (608)
                      .++.++ ...|+.+
T Consensus       309 ~l~~~~~~~~g~~~  322 (330)
T 3hym_B          309 MLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHTTTTC--
T ss_pred             HHHHHHHHHhCchh
Confidence            999998 5666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=7.2e-31  Score=269.12  Aligned_cols=317  Identities=17%  Similarity=0.135  Sum_probs=279.5

Q ss_pred             cchhHHHHhh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          249 AEPTSLCRAL--STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       249 ~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      .+|...+..+  ..|.++.+++.+|.+++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   99 (359)
T 3ieg_A           20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK   99 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            3445555544  34788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048          327 IEP---HYHRAHHRL------------ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       327 ~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (608)
                      ++|   ++..++..+            |.++...|++++|+..|++++. ..|.+      ...+..++.++...|++++
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~  172 (359)
T 3ieg_A          100 SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-VCVWD------AELRELRAECFIKEGEPRK  172 (359)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred             cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCc------hHHHHHHHHHHHHCCCHHH
Confidence            999   888888777            7999999999999999999998 88877      5788899999999999999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccC--CCCcHHHHHHHHHHHHHcCCHH
Q 040048          392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFG--PIGNANLLVVRAQVNLACGRFE  469 (608)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~  469 (608)
                      |+..+++++...|.. +.++..+|.++...|++++|+..|+++++..|+....+..  ..........+|.++...|+++
T Consensus       173 A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  251 (359)
T 3ieg_A          173 AISDLKAASKLKSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT  251 (359)
T ss_dssp             HHHHHHHHHTTCSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999887 5789999999999999999999999999998886321100  0000112335588999999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 040048          470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFE  549 (608)
Q Consensus       470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  549 (608)
                      +|+..|++++...|++...+.        ..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+++
T Consensus       252 ~A~~~~~~~~~~~~~~~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  323 (359)
T 3ieg_A          252 DATSKYESVMKTEPSVAEYTV--------RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD  323 (359)
T ss_dssp             HHHHHHHHHHHHCCSSHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhcCCCchHHHH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999876543        234579999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          550 KAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       550 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      +|+.+|+++++++|++..++..++.++..+++
T Consensus       324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          324 EAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.5e-31  Score=283.84  Aligned_cols=250  Identities=12%  Similarity=0.063  Sum_probs=164.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 040048          299 SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLN  378 (608)
Q Consensus       299 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~  378 (608)
                      .+++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++. .+|.+      ...+..
T Consensus       238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~  309 (514)
T 2gw1_A          238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALK-LDSNN------SSVYYH  309 (514)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHT-TCTTC------THHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhh-cCcCC------HHHHHH
Confidence            34444555555555555555555555555555 55555555555555555555555555554 44444      334555


Q ss_pred             HhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 040048          379 KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVR  458 (608)
Q Consensus       379 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l  458 (608)
                      ++.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+..+++++...|++          ..++..+
T Consensus       310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l  378 (514)
T 2gw1_A          310 RGQMNFILQNYDQAGKDFDKAKELDPEN-IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA----------PEVPNFF  378 (514)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHHHTCSSC-SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC----------SHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC----------HHHHHHH
Confidence            5555555666666666666666555554 2455555666666666666666666655555543          4555666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048          459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK---QAKFSEAAAAYGDGLGLDPYNSVLL  535 (608)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~  535 (608)
                      |.++...|++++|+..|++++...|++.....      .+..+..+|.++..   .|++++|+..|++++..+|+++.++
T Consensus       379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  452 (514)
T 2gw1_A          379 AEILTDKNDFDKALKQYDLAIELENKLDGIYV------GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK  452 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhhccchHHH------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            66666666666666666666666555543000      01134599999999   9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048          536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA  573 (608)
Q Consensus       536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la  573 (608)
                      ..+|.++...|++++|+..|+++++++|++..++..+.
T Consensus       453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  490 (514)
T 2gw1_A          453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT  490 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            99999999999999999999999999999998887764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=261.43  Aligned_cols=291  Identities=9%  Similarity=-0.041  Sum_probs=266.6

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          287 YDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       287 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      ....+...|+++..+..+|.+++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++. .+|.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~   89 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD-LYPSN   89 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTS
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcCC
Confidence            34556667888899999999999999999999999999999999999999999999999999999999999998 88877


Q ss_pred             HHHHHHHHHHHHHhHHHHHhh-cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccc
Q 040048          367 IAKAKSLQAHLNKCTDAKRTR-DWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRF  445 (608)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~  445 (608)
                            ...+..++..+...| ++++|+..+++++..+|.. ..++..+|.++...|++++|+..|++++...|+.    
T Consensus        90 ------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----  158 (330)
T 3hym_B           90 ------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC----  158 (330)
T ss_dssp             ------THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----
T ss_pred             ------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----
Confidence                  678889999999999 9999999999999999887 4688999999999999999999999999998874    


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048          446 FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL  525 (608)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al  525 (608)
                            ..++..+|.++...|++++|+..|+++++..|.+..++.            .+|.++...|++++|+.+|++++
T Consensus       159 ------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          159 ------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH------------EVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             ------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHcccHHHHHHHHHHHH
Confidence                  677888999999999999999999999999999988775            89999999999999999999999


Q ss_pred             cCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          526 GLD---------PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       526 ~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ...         |..+.++..+|.++...|++++|+.+|++++++.|++..++..+|.++..+|++++|+.+|+++++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            875         66788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhh
Q 040048          597 PDDEEVDQALQ  607 (608)
Q Consensus       597 P~~~~~~~~L~  607 (608)
                      |++..++..|.
T Consensus       301 p~~~~~~~~l~  311 (330)
T 3hym_B          301 RDDTFSVTMLG  311 (330)
T ss_dssp             SCCHHHHHHHH
T ss_pred             CCchHHHHHHH
Confidence            99999887653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1e-29  Score=280.33  Aligned_cols=325  Identities=14%  Similarity=0.065  Sum_probs=246.5

Q ss_pred             hHHHHhh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------CCChhHHHHHHHHHHHcCCH
Q 040048          252 TSLCRAL-STRMDPETLKIMGNEDYKAGNFAEALALYDAAISID----------------PNKASYRSNKTAALIALGRL  314 (608)
Q Consensus       252 ~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~  314 (608)
                      ...+... ..+.++.++..+|.++...|++++|+..|++.....                |.+..+|+.+|.+|...|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  216 (597)
T 2xpi_A          137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF  216 (597)
T ss_dssp             HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence            3344433 236789999999999999999999999999633222                22378899999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHH--------------------------------------HHHHcCCHHHHHHHHH
Q 040048          315 LEAVFECREAIRIEPHYHRAHHRLAN--------------------------------------LYLRLGEVEKAIYHFK  356 (608)
Q Consensus       315 ~eA~~~~~~al~~~p~~~~~~~~la~--------------------------------------~~~~~g~~~~A~~~~~  356 (608)
                      ++|+..|+++++.+|++..++..++.                                      +|...|++++|+..|+
T Consensus       217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            99999999999999988777666543                                      2335677777777777


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh-----------------------------
Q 040048          357 HAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA-----------------------------  407 (608)
Q Consensus       357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------------------  407 (608)
                      +++. . |.+      ...+..++..+...|++++|+..+++++..+|.+.                             
T Consensus       297 ~~~~-~-~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  368 (597)
T 2xpi_A          297 SING-L-EKS------SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR  368 (597)
T ss_dssp             TSTT-G-GGC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             Hhhc-C-Cch------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence            7766 4 333      45566666667777777777777777666555431                             


Q ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          408 ----PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       408 ----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                          ..++..+|.+|...|++++|+..|+++++..|++          ..+|..++.+|...|++++|+..|++++...|
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  438 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ  438 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence                3445555666666666666666666665555543          55666666666666666666666666666666


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 040048          484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--  561 (608)
Q Consensus       484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--  561 (608)
                      ++...+.            .+|.++...|++++|+.+|+++++..|.++.+|..+|.++...|++++|++.|+++++.  
T Consensus       439 ~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  506 (597)
T 2xpi_A          439 GTHLPYL------------FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK  506 (597)
T ss_dssp             TCSHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            5555543            88999999999999999999999999999999999999999999999999999999988  


Q ss_pred             ----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          562 ----RPGY-SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       562 ----~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                          +|+. ..+|..+|.+|...|++++|++.|+++++++|++..++..|
T Consensus       507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  556 (597)
T 2xpi_A          507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI  556 (597)
T ss_dssp             HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence                5654 78899999999999999999999999999999998887665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=9.6e-31  Score=270.14  Aligned_cols=294  Identities=14%  Similarity=0.071  Sum_probs=214.9

Q ss_pred             HHHcCCHHHHHH-HHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 040048          274 DYKAGNFAEALA-LYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEV  348 (608)
Q Consensus       274 ~~~~g~~~~Al~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  348 (608)
                      +...|+|++|+. .|++++.+.|+++    ..++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence            334455555555 5555555555442    33555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH---------------HHH
Q 040048          349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI---------------YAL  413 (608)
Q Consensus       349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~  413 (608)
                      ++|+..|++++. ++|.+      ...+..++.++...|++++|+..+++++...|......               +..
T Consensus       115 ~~A~~~~~~al~-~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 1fch_A          115 LLAISALRRCLE-LKPDN------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI  187 (368)
T ss_dssp             HHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred             HHHHHHHHHHHh-cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence            555555555555 45544      34455555555555555555555555555555443221               123


Q ss_pred             HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048          414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR  493 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  493 (608)
                      ++.++ ..|++++|+..|++++...|+..        ...++..+|.++...|++++|+..|++++...|++..++.   
T Consensus       188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---  255 (368)
T 1fch_A          188 LGSLL-SDSLFLEVKELFLAAVRLDPTSI--------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN---  255 (368)
T ss_dssp             THHHH-HHHHHHHHHHHHHHHHHHSTTSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred             HHHHh-hcccHHHHHHHHHHHHHhCcCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH---
Confidence            56666 88999999999999999888721        2889999999999999999999999999999999988775   


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY--------  565 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------  565 (608)
                               .+|.++...|++++|+.+|++++.++|.++.++..+|.++...|++++|+.+|++++.+.|++        
T Consensus       256 ---------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  326 (368)
T 1fch_A          256 ---------KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG  326 (368)
T ss_dssp             ---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred             ---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence                     899999999999999999999999999999999999999999999999999999999999888        


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          566 ---SKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       566 ---~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                         ..+|..+|.+|..+|++++|..+++++++.
T Consensus       327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          327 AMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             chhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence               899999999999999999999999988765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=278.35  Aligned_cols=350  Identities=12%  Similarity=-0.009  Sum_probs=263.9

Q ss_pred             ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 040048          220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISID---  294 (608)
Q Consensus       220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~---  294 (608)
                      .+|.|+...  +++|..+|++++.+.+.        .......+....+|.++|.+|+..|++++|+.+|++++.+.   
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~--------~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQ--------EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHh--------cCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            678887665  77888877765443211        00111235567889999999999999999999999999863   


Q ss_pred             -----CCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHhCCCCCc
Q 040048          295 -----PNKASYRSNKTAALIAL--GRLLEAVFECREAIRIEPHYHRAHHRLANLYLR---LGEVEKAIYHFKHAGPEADQ  364 (608)
Q Consensus       295 -----p~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~p  364 (608)
                           +..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.++..   .+++++|++.|++++. ++|
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-l~p  206 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-LNP  206 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-HCS
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-cCC
Confidence                 44577888999888775  479999999999999999999999999988654   5778899999999998 888


Q ss_pred             hhHHHHHHHHHHHHHhH----HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048          365 VDIAKAKSLQAHLNKCT----DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD  440 (608)
Q Consensus       365 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  440 (608)
                      .+.      ..+..++.    .....+++++|+..+++++..+|.. ..++..+|.+|...|++++|+..|+++++..|+
T Consensus       207 ~~~------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  279 (472)
T 4g1t_A          207 DNQ------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN  279 (472)
T ss_dssp             SCH------HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cch------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence            883      33333443    3445678899999999999999987 478889999999999999999999999999998


Q ss_pred             ccccccCCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          441 ETTRFFGPIGNANLLVVRAQVNLAC-------------------GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       441 ~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      +          ..++..+|.+|...                   +.+++|+..|++++.++|....++.           
T Consensus       280 ~----------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----------  338 (472)
T 4g1t_A          280 N----------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS-----------  338 (472)
T ss_dssp             C----------HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH-----------
T ss_pred             h----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh-----------
Confidence            5          88888899887543                   3468899999999999999988876           


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHhcC---------------
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV---LLCNRAAC-RSKLGQFEKAIEDCNAALNVR---------------  562 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~---------------  562 (608)
                       .+|.++...|++++|+.+|++++.+++++..   +++.+|.+ +...|++++|+.+|++++++.               
T Consensus       339 -~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~  417 (472)
T 4g1t_A          339 -ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQK  417 (472)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred             -hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence             8999999999999999999999999887643   45667755 457899999999999998764               


Q ss_pred             ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          563 ---------PGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       563 ---------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                               |+++.+|..+|.+|..+|++++|+++|++++++.|.++.+...+.
T Consensus       418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence                     556778999999999999999999999999999999998877664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=1.1e-29  Score=262.54  Aligned_cols=281  Identities=16%  Similarity=0.086  Sum_probs=240.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .++..++.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |...|++++|+..|++++. +.|.+..      .+..++                         ....++..+|.++...
T Consensus       143 ~~~~g~~~~A~~~~~~al~-~~p~~~~------~~~~~~-------------------------~~~~~~~~l~~~~~~~  190 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIK-QNPKYKY------LVKNKK-------------------------GSPGLTRRMSKSPVDS  190 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-HCHHHHC------C--------------------------------------------CC
T ss_pred             HHccccHHHHHHHHHHHHH-hCccchH------HHhhhc-------------------------cchHHHHHHHHHHhhh
Confidence            9999999999999999988 7776521      111110                         0123445567788888


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      |++++|+.+|++++...|+.        .++.++..+|.++...|++++|+..|+++++..|++..++.           
T Consensus       191 g~~~~A~~~~~~al~~~p~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----------  251 (365)
T 4eqf_A          191 SVLEGVKELYLEAAHQNGDM--------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN-----------  251 (365)
T ss_dssp             HHHHHHHHHHHHHHHHSCSS--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-----------
T ss_pred             hhHHHHHHHHHHHHHhCcCc--------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------
Confidence            88888888888888877762        12889999999999999999999999999999999988876           


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------------YSKAR  569 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~  569 (608)
                       .+|.++...|++++|+.+|+++++.+|+++.++..+|.+|..+|++++|+.+|++++++.|+            ...+|
T Consensus       252 -~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  330 (365)
T 4eqf_A          252 -RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW  330 (365)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence             89999999999999999999999999999999999999999999999999999999999877            36789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          570 LRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      ..++.++..+|+.+.|..+.++.++
T Consensus       331 ~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          331 AALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            9999999999999999888776544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=8.2e-29  Score=255.65  Aligned_cols=298  Identities=13%  Similarity=0.048  Sum_probs=257.3

Q ss_pred             ccCCCccc-ccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 040048          227 KQNDHPQN-HYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKT  305 (608)
Q Consensus       227 ~~~~~a~~-~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la  305 (608)
                      +.++.|.. .|..++.+.+.+.             ..+...++.+|.+++..|++++|+.+|+++++.+|+++.++..+|
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  105 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENP-------------LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLG  105 (368)
T ss_dssp             -------CHHHHCCCCCCSSCT-------------TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCc-------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44777777 7777777665421             224567899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHH----------HHH
Q 040048          306 AALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKS----------LQA  375 (608)
Q Consensus       306 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~----------~~~  375 (608)
                      .++...|++++|+..|+++++++|++..++..+|.+|...|++++|+..|++++. ..|.+......          ...
T Consensus       106 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 1fch_A          106 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPAEEGAGGAGLGPS  184 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSTTTGGGCC--------------
T ss_pred             HHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHhhhhcccHH
Confidence            9999999999999999999999999999999999999999999999999999998 77766321110          011


Q ss_pred             HHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048          376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADS-APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL  454 (608)
Q Consensus       376 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~  454 (608)
                      +..++..+ ..|++++|+..+++++...|.. ...++..+|.++...|++++|+..|++++...|++          ..+
T Consensus       185 ~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~  253 (368)
T 1fch_A          185 KRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----------YLL  253 (368)
T ss_dssp             -CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------HHH
T ss_pred             HHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----------HHH
Confidence            11344444 8899999999999999999984 46889999999999999999999999999998875          889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---
Q 040048          455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---  531 (608)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---  531 (608)
                      +..+|.++...|++++|+..|++++.+.|++..++.            .+|.++...|++++|+.+|++++.+.|++   
T Consensus       254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  321 (368)
T 1fch_A          254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY------------NLGISCINLGAHREAVEHFLEALNMQRKSRGP  321 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence            999999999999999999999999999999988775            89999999999999999999999998887   


Q ss_pred             --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          532 --------SVLLCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       532 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                              ..+|..+|.++..+|++++|..+++++++.
T Consensus       322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence                    899999999999999999999999887764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=3.9e-29  Score=253.06  Aligned_cols=286  Identities=14%  Similarity=0.096  Sum_probs=247.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      +++.++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH-HH-HHHH
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ-AE-ALLK  420 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l-a~-~~~~  420 (608)
                      ...|++++|+..|++++. ..|.+..      .+..+.                    ...+..  .....+ +. ++..
T Consensus       100 ~~~~~~~~A~~~~~~~~~-~~~~~~~------~~~~~~--------------------~~~~~~--~~~~~~~~~~~~~~  150 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLL-SQPQYEQ------LGSVNL--------------------QADVDI--DDLNVQSEDFFFAA  150 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHH-TSTTTTT------C------------------------------------------CCTTS
T ss_pred             HHcCCHHHHHHHHHHHHH-hCCccHH------HHHHHh--------------------HHHHHH--HHHHHHHHhHHHHH
Confidence            999999999999999988 7776521      111000                    000000  011122 33 4667


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      .|++++|+..++++++..|++          ..++..+|.++...|++++|+..+++++...|++..++.          
T Consensus       151 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------  210 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEMNPND----------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN----------  210 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----------
T ss_pred             cccHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH----------
Confidence            777888888888888777764          889999999999999999999999999999999988775          


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHH
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------------YSKA  568 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a  568 (608)
                        .+|.++...|++++|+.+|+++++..|++..++..+|.++...|++++|+.+|++++.+.|+            +..+
T Consensus       211 --~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  288 (327)
T 3cv0_A          211 --KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM  288 (327)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred             --HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence              89999999999999999999999999999999999999999999999999999999999999            7899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          569 RLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       569 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      +..+|.++..+|++++|...++++++..|++
T Consensus       289 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          289 WDFFRMLLNVMNRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence            9999999999999999999999988876654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=256.55  Aligned_cols=312  Identities=14%  Similarity=0.054  Sum_probs=262.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI---------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI-----  327 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----  327 (608)
                      ..+..+..+|.++..+|++++|+++|++++++         +|....+|.++|.+|..+|++++|+.+|++++++     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34667889999999999999999999999986         5677788999999999999999999999999986     


Q ss_pred             ---CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH---hhcHHHHHHHHHHH
Q 040048          328 ---EPHYHRAHHRLANLYLRLG--EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR---TRDWNTLIQETRAA  399 (608)
Q Consensus       328 ---~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a  399 (608)
                         .+..+.++..+|.++...|  ++++|+.+|++++. ++|++      ..++..++.++..   .++.++|+..++++
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~-~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~a  201 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQA  201 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-HSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence               3456788988888877654  69999999999999 99988      4555556655444   45668899999999


Q ss_pred             HHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          400 IAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI  475 (608)
Q Consensus       400 l~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (608)
                      ++++|+.. .++..+|..+..    .+++++|+.++++++..+|+.          ..++..+|.+|...|++++|+..|
T Consensus       202 l~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~  270 (472)
T 4g1t_A          202 IRLNPDNQ-YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV----------TDVLRSAAKFYRRKDEPDKAIELL  270 (472)
T ss_dssp             HHHCSSCH-HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcCCcch-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHHcCchHHHHHHH
Confidence            99999874 566666765554    567889999999999999875          889999999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 040048          476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF-------------------KQAKFSEAAAAYGDGLGLDPYNSVLLC  536 (608)
Q Consensus       476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~-------------------~~g~~~eA~~~~~~al~~~p~~~~~~~  536 (608)
                      +++++..|++..++.            .+|.+|.                   ..+.+++|+..|++++..+|.+..++.
T Consensus       271 ~~al~~~p~~~~~~~------------~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  338 (472)
T 4g1t_A          271 KKALEYIPNNAYLHC------------QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS  338 (472)
T ss_dssp             HHHHHHSTTCHHHHH------------HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH
T ss_pred             HHHHHhCCChHHHHH------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh
Confidence            999999999998876            4444443                   234578999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSK---ARLRRADC-FAKIEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      .+|.++...|++++|+.+|++++++.|++..   +++.+|.+ +...|++++|+.+|+++++++|++.+..
T Consensus       339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~  409 (472)
T 4g1t_A          339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE  409 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence            9999999999999999999999999887643   46677765 4578999999999999999998876644

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=2.1e-28  Score=253.39  Aligned_cols=248  Identities=13%  Similarity=0.057  Sum_probs=212.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR-LLEAVFECREAIRIEPHYHRAHHRL  338 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l  338 (608)
                      .|.++++|..+|.++...|++++|+.+|+++|.++|++..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|+.+
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999997 9999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEAL  418 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~  418 (608)
                      |.++..+|++++|+..|++++. ++|.+                                                    
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~-ldP~~----------------------------------------------------  199 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILN-QDAKN----------------------------------------------------  199 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHH-HCTTC----------------------------------------------------
T ss_pred             HHHHHHccCHHHHHHHHHHHHH-hCccC----------------------------------------------------
Confidence            9999999999999999999887 66655                                                    


Q ss_pred             HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048          419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV  498 (608)
Q Consensus       419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  498 (608)
                                                       ..+|..+|.++...|++++|+..|+++++++|++..+|.        
T Consensus       200 ---------------------------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~--------  238 (382)
T 2h6f_A          200 ---------------------------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN--------  238 (382)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH--------
T ss_pred             ---------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH--------
Confidence                                             667777888888888888888888888888888887775        


Q ss_pred             HHHHHHHHHHHH-cCCHHHH-----HHHHHHhhcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHH
Q 040048          499 AAARSNGNALFK-QAKFSEA-----AAAYGDGLGLDPYNSVLLCNRAACRSKLG--QFEKAIEDCNAALNVRPGYSKARL  570 (608)
Q Consensus       499 ~~~~~lg~~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~  570 (608)
                          .+|.++.. .|.+++|     +.+|++++.++|++..+|+++|.++...|  ++++|++.++++ +.+|++..++.
T Consensus       239 ----~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~  313 (382)
T 2h6f_A          239 ----QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIA  313 (382)
T ss_dssp             ----HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHH
T ss_pred             ----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHH
Confidence                77888887 4544666     47888888888888888888888888877  588888888877 78888888888


Q ss_pred             HHHHHHHHcC--------C-HHHHHHHHHHH-HHhCCCCHHHHHHh
Q 040048          571 RRADCFAKIE--------K-WEASMQDYEIL-KKEAPDDEEVDQAL  606 (608)
Q Consensus       571 ~la~~~~~~g--------~-~~~A~~~~~~a-l~l~P~~~~~~~~L  606 (608)
                      .+|.+|.++|        + +++|+++|+++ ++++|.....|..+
T Consensus       314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~  359 (382)
T 2h6f_A          314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI  359 (382)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            8888888874        2 57888888888 88888888777654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=3.5e-28  Score=251.14  Aligned_cols=262  Identities=15%  Similarity=0.137  Sum_probs=210.2

Q ss_pred             HHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048          284 LALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG  359 (608)
Q Consensus       284 l~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  359 (608)
                      +..+.+++...+.++    ..++.+|.++...|++++|+..|++++..+|++..++..+|.+|...|++++|+..|++++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  126 (365)
T 4eqf_A           47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL  126 (365)
T ss_dssp             ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344555555555554    4599999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCC
Q 040048          360 PEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDV  439 (608)
Q Consensus       360 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  439 (608)
                      . ++|.+                                         ..++..+|.++...|++++|+..|+++++..|
T Consensus       127 ~-~~p~~-----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  164 (365)
T 4eqf_A          127 E-LQPNN-----------------------------------------LKALMALAVSYTNTSHQQDACEALKNWIKQNP  164 (365)
T ss_dssp             H-HCTTC-----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred             h-cCCCC-----------------------------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence            8 67766                                         34555566666666666666666666666666


Q ss_pred             cccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 040048          440 DETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN--NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA  517 (608)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA  517 (608)
                      +....+....+....+..+|.++...|++++|+..|++++...|.  +..++.            .+|.++...|++++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------~l~~~~~~~g~~~~A  232 (365)
T 4eqf_A          165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT------------GLGVLFHLSGEFNRA  232 (365)
T ss_dssp             HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH------------HHHHHHHHHTCHHHH
T ss_pred             cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH------------HHHHHHHHCCCHHHH
Confidence            543333221123556667899999999999999999999999999  666665            899999999999999


Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          518 AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       518 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      +.+|+++++.+|+++.+|..+|.++...|++++|+.+|++++++.|+++.++..+|.+|..+|++++|+.+|+++++++|
T Consensus       233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  312 (365)
T 4eqf_A          233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 040048          598 DD  599 (608)
Q Consensus       598 ~~  599 (608)
                      ++
T Consensus       313 ~~  314 (365)
T 4eqf_A          313 KS  314 (365)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=2.2e-27  Score=234.14  Aligned_cols=248  Identities=12%  Similarity=0.008  Sum_probs=160.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRL  338 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~l  338 (608)
                      +++.++.+|.+++..|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.+    ..++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999998 4333    4568899


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEAL  418 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~  418 (608)
                      |.++...|++++|+..|++++. .+|.+                                         ..++..+|.++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~-~~~~~-----------------------------------------~~~~~~l~~~~  118 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVD-RDTTR-----------------------------------------LDMYGQIGSYF  118 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-HSTTC-----------------------------------------THHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHh-cCccc-----------------------------------------HHHHHHHHHHH
Confidence            9999999999999988888876 44443                                         24555556666


Q ss_pred             HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048          419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV  498 (608)
Q Consensus       419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  498 (608)
                      ...|++++|+..|+++++..|.+          ..++..+|......+++++|+..|+++++..|++...+.        
T Consensus       119 ~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~--------  180 (272)
T 3u4t_A          119 YNKGNFPLAIQYMEKQIRPTTTD----------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL--------  180 (272)
T ss_dssp             HHTTCHHHHHHHHGGGCCSSCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--------
T ss_pred             HHccCHHHHHHHHHHHhhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH--------
Confidence            66666666666666666655543          555555553333334555555555555555555544433        


Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHhhcCC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          499 AAARSNGNALFKQAK---FSEAAAAYGDGLGLD---PY-----NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                          .+|.++...|+   +++|+..|+++++..   |+     ...++..+|.+|...|++++|+.+|+++++++|+++.
T Consensus       181 ----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  256 (272)
T 3u4t_A          181 ----WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK  256 (272)
T ss_dssp             ----HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ----HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence                44555555555   555555555555442   22     1134444455555555555555555555555555544


Q ss_pred             HHHHHHHH
Q 040048          568 ARLRRADC  575 (608)
Q Consensus       568 a~~~la~~  575 (608)
                      ++-.++.+
T Consensus       257 a~~~l~~~  264 (272)
T 3u4t_A          257 AIDGLKMK  264 (272)
T ss_dssp             HHHHHC--
T ss_pred             HHHHhhhh
Confidence            44444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.9e-26  Score=224.87  Aligned_cols=238  Identities=24%  Similarity=0.379  Sum_probs=188.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------HRAH  335 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~  335 (608)
                      .++.++.+|.+++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++++.|+.       ..++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            36788999999999999999999999999998 888899999999999999999999999999888766       6788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 040048          336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQA  415 (608)
Q Consensus       336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la  415 (608)
                      ..+|.+|...|++++|+..|++++. +.|.                                                  
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~--------------------------------------------------  111 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLT-EHRT--------------------------------------------------  111 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-HCCC--------------------------------------------------
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHh-cCch--------------------------------------------------
Confidence            8888888888888888888877765 2221                                                  


Q ss_pred             HHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040048          416 EALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA  495 (608)
Q Consensus       416 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  495 (608)
                                                                 +.++...|++++|+..+++++..+|.+..++.     
T Consensus       112 -------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----  143 (258)
T 3uq3_A          112 -------------------------------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR-----  143 (258)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-----
T ss_pred             -------------------------------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH-----
Confidence                                                       12344455667777777777777666555554     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                             .+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++..|+++.+++.+|.+
T Consensus       144 -------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          144 -------LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             -------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -------HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence                   7777777888888888888888887787788888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHhh
Q 040048          576 FAKIEKWEASMQDYEILKKEA------PDDEEVDQALQ  607 (608)
Q Consensus       576 ~~~~g~~~~A~~~~~~al~l~------P~~~~~~~~L~  607 (608)
                      +..+|++++|+.+|+++++++      |++.+++..|.
T Consensus       217 ~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence            888888888888888888887      77777776654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=242.83  Aligned_cols=312  Identities=13%  Similarity=0.078  Sum_probs=263.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRI------EPH  330 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~  330 (608)
                      ......++.+|..++..|++++|+.+|++++...|.++    .++..+|.++...|++++|+.+|++++.+      .|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34577899999999999999999999999999999984    67999999999999999999999999887      344


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--------------------HH
Q 040048          331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--------------------WN  390 (608)
Q Consensus       331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~  390 (608)
                      ...++..+|.+|...|++++|+..+++++. +.+...........+..++.++...|+                    ++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            477899999999999999999999999987 666554445567789999999999999                    99


Q ss_pred             HHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc
Q 040048          391 TLIQETRAAIAGG-----ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC  465 (608)
Q Consensus       391 ~A~~~~~~al~~~-----~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~  465 (608)
                      +|+..+.+++...     +.....++..+|.++...|++++|+.++++++...+......    ....++..+|.++...
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~  240 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERRAYSNLGNAYIFL  240 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHc
Confidence            9999999998752     222345788999999999999999999999998765532211    1256899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHH
Q 040048          466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRA  539 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la  539 (608)
                      |++++|+.++++++.+.+.......      ....+..+|.++...|++++|+.+|++++.+.+..      ..++..+|
T Consensus       241 g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la  314 (406)
T 3sf4_A          241 GEFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG  314 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            9999999999999988765432211      13345699999999999999999999999875433      67899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHH
Q 040048          540 ACRSKLGQFEKAIEDCNAALNVRP------GYSKARLRRADCFAKIEKWE  583 (608)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~  583 (608)
                      .+|...|++++|+.+|++++++.+      ....++..+|.++..+|+..
T Consensus       315 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          315 NAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            999999999999999999999843      33678899999999999763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=2.5e-25  Score=222.55  Aligned_cols=262  Identities=13%  Similarity=0.112  Sum_probs=195.1

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          274 DYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI  352 (608)
Q Consensus       274 ~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  352 (608)
                      .+..|+|.+|+..++++...+|++ ......++.+|..+|++++|+..++.   .+|....++..++..+...|++++|+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~   85 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIV   85 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence            344555555555555444444443 23444445555555555555544433   13333344444555555555555555


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048          353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG--GADSAPQIYALQAEALLKLHKHQEADET  430 (608)
Q Consensus       353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~la~~~~~~g~~~eA~~~  430 (608)
                      +.++                                         +++..  +|++ +.++..+|.++...|++++|+..
T Consensus        86 ~~l~-----------------------------------------~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~  123 (291)
T 3mkr_A           86 AELD-----------------------------------------REMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRT  123 (291)
T ss_dssp             HHHH-----------------------------------------HHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHH-----------------------------------------HHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            5554                                         44443  2444 57889999999999999999999


Q ss_pred             hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048          431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK  510 (608)
Q Consensus       431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~  510 (608)
                      |++     |+          +..++..+|.++..+|++++|+..|+++++.+|++.......          ....++..
T Consensus       124 l~~-----~~----------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~  178 (291)
T 3mkr_A          124 LHQ-----GD----------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLAT----------AWVSLAAG  178 (291)
T ss_dssp             HTT-----CC----------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHC
T ss_pred             HhC-----CC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhC
Confidence            998     43          388999999999999999999999999999999876443210          12233445


Q ss_pred             cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHH
Q 040048          511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA-SMQDY  589 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~~~  589 (608)
                      .|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++ +..++
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999976 57899


Q ss_pred             HHHHHhCCCCHHHHHH
Q 040048          590 EILKKEAPDDEEVDQA  605 (608)
Q Consensus       590 ~~al~l~P~~~~~~~~  605 (608)
                      +++++++|+++.+...
T Consensus       259 ~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          259 SQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHHCTTCHHHHHH
T ss_pred             HHHHHhCCCChHHHHH
Confidence            9999999999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=1e-25  Score=215.28  Aligned_cols=212  Identities=18%  Similarity=0.242  Sum_probs=171.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.++++++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            56778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      ++...+         ... .                                                            
T Consensus        82 ~~~~~~---------~~~-~------------------------------------------------------------   91 (217)
T 2pl2_A           82 AYVALY---------RQA-E------------------------------------------------------------   91 (217)
T ss_dssp             HHHHHH---------HTC-S------------------------------------------------------------
T ss_pred             HHHHhh---------hhh-h------------------------------------------------------------
Confidence            876541         000 0                                                            


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                                                    .         .....|++++|+..|+++++++|++..++.          
T Consensus        92 ------------------------------~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~----------  122 (217)
T 2pl2_A           92 ------------------------------D---------RERGKGYLEQALSVLKDAERVNPRYAPLHL----------  122 (217)
T ss_dssp             ------------------------------S---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHH----------
T ss_pred             ------------------------------h---------hcccccCHHHHHHHHHHHHHhCcccHHHHH----------
Confidence                                          0         112347899999999999999999998886          


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                        .+|.++...|++++|+..|+++++++ +++.+++++|.++..+|++++|+..|+++++++|+++.++..+|.++..+|
T Consensus       123 --~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g  199 (217)
T 2pl2_A          123 --QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG  199 (217)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred             --HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence              89999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 040048          581 KWEASMQDYEILKK  594 (608)
Q Consensus       581 ~~~~A~~~~~~al~  594 (608)
                      ++++|+..|+++..
T Consensus       200 ~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          200 KAEEAARAAALEHH  213 (217)
T ss_dssp             --------------
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=9.8e-26  Score=215.42  Aligned_cols=205  Identities=20%  Similarity=0.158  Sum_probs=145.2

Q ss_pred             ccccccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 040048          233 QNHYNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA  310 (608)
Q Consensus       233 ~~~y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~  310 (608)
                      ..++..+..+...+..++|...++..+  .|.++++++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            334444444445566677888777764  478999999999999999999999999999999999999999999999987


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHH
Q 040048          311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWN  390 (608)
Q Consensus       311 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (608)
                      ++..             ...          .+...|++++|+..|++++. ++|++                        
T Consensus        86 ~~~~-------------~~~----------~~~~~g~~~~A~~~~~~al~-~~P~~------------------------  117 (217)
T 2pl2_A           86 LYRQ-------------AED----------RERGKGYLEQALSVLKDAER-VNPRY------------------------  117 (217)
T ss_dssp             HHHT-------------CSS----------HHHHHHHHHHHHHHHHHHHH-HCTTC------------------------
T ss_pred             hhhh-------------hhh----------hcccccCHHHHHHHHHHHHH-hCccc------------------------
Confidence            6210             010          12233555555555555544 33322                        


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH
Q 040048          391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED  470 (608)
Q Consensus       391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  470 (608)
                                                                                   ..++..+|.++...|++++
T Consensus       118 -------------------------------------------------------------~~~~~~lg~~~~~~g~~~~  136 (217)
T 2pl2_A          118 -------------------------------------------------------------APLHLQRGLVYALLGERDK  136 (217)
T ss_dssp             -------------------------------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred             -------------------------------------------------------------HHHHHHHHHHHHHcCChHH
Confidence                                                                         6677778888888888888


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK  550 (608)
Q Consensus       471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  550 (608)
                      |+..|+++++++ +++.++.            .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus       137 A~~~~~~al~~~-~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          137 AEASLKQALALE-DTPEIRS------------ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHHHHHHHHC-CCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHhcc-cchHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            888888888888 7777665            788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHH
Q 040048          551 AIEDCNAAL  559 (608)
Q Consensus       551 A~~~~~~al  559 (608)
                      |+..|+++-
T Consensus       204 A~~~~~~~~  212 (217)
T 2pl2_A          204 AARAAALEH  212 (217)
T ss_dssp             ---------
T ss_pred             HHHHHHHHh
Confidence            888887753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=2.9e-23  Score=223.54  Aligned_cols=311  Identities=12%  Similarity=0.042  Sum_probs=259.4

Q ss_pred             chhHHHHhhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHH
Q 040048          250 EPTSLCRALSTRMDPETLKIMGNEDYK----AGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVFEC  321 (608)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~  321 (608)
                      +|..+++......++.+++.+|.++..    .+++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|
T Consensus        97 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  174 (490)
T 2xm6_A           97 QAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWY  174 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            345566666566788888889988888    78899999999888775  478888888988887    78889999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH----hhcHHHHH
Q 040048          322 REAIRIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR----TRDWNTLI  393 (608)
Q Consensus       322 ~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~  393 (608)
                      +++++.  .++.+++.+|.+|..    .+++++|+.+|++++. ..  +      ..+++.++..+..    .+++++|+
T Consensus       175 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~--~------~~a~~~lg~~y~~g~g~~~~~~~A~  243 (490)
T 2xm6_A          175 SKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG--D------ELGQLHLADMYYFGIGVTQDYTQSR  243 (490)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT--C------HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC--C------HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            888875  468888889998888    8889999999988865 32  2      3466777777776    78899999


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc----
Q 040048          394 QETRAAIAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC----  465 (608)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~----  465 (608)
                      ..++++++.+.   +..+..+|.+|..    .+++++|+.+|+++.+..            +..+++.+|.+|...    
T Consensus       244 ~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~------------~~~a~~~Lg~~y~~~~~g~  308 (490)
T 2xm6_A          244 VLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG------------NSDGQYYLAHLYDKGAEGV  308 (490)
T ss_dssp             HHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHCBTTB
T ss_pred             HHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHcCCCCC
Confidence            99999887643   5678888999888    889999999999987652            378888999999887    


Q ss_pred             -CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 040048          466 -GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA---KFSEAAAAYGDGLGLDPYNSVLLCNRAAC  541 (608)
Q Consensus       466 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~  541 (608)
                       +++++|+.+|+++++..  +..++.            .+|.++...|   ++++|+.+|+++++.  .++.+++++|.+
T Consensus       309 ~~~~~~A~~~~~~a~~~~--~~~a~~------------~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  372 (490)
T 2xm6_A          309 AKNREQAISWYTKSAEQG--DATAQA------------NLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNA  372 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHH------------HHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcC--CHHHHH------------HHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence             89999999999998763  444443            8899998866   899999999999987  679999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHHh
Q 040048          542 RSK----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPD---DEEVDQAL  606 (608)
Q Consensus       542 ~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~---~~~~~~~L  606 (608)
                      |..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++..|+   ++.+...|
T Consensus       373 y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l  446 (490)
T 2xm6_A          373 LLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE  446 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence            999    89999999999999986  468999999999999    89999999999999999954   77776655

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.93  E-value=4.1e-25  Score=223.42  Aligned_cols=250  Identities=17%  Similarity=0.205  Sum_probs=203.6

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL  377 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~  377 (608)
                      ...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++. .+|.+      ...+.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~------~~~~~   93 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKD------IAVHA   93 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC------HHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCcCC------HHHHH
Confidence            456899999999999999999999999999999999999999999999999999999999988 77766      34444


Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~  457 (608)
                      .++.++...|++++|+..+++++...|.... .+..+.                    ...++           ......
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~--------------------~~~~~-----------~~~~~~  141 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ-LGSVNL--------------------QADVD-----------IDDLNV  141 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT-C-----------------------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-HHHHHh--------------------HHHHH-----------HHHHHH
Confidence            5555555555555555555555555444321 000000                    00000           111112


Q ss_pred             H-HH-HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048          458 R-AQ-VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL  535 (608)
Q Consensus       458 l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  535 (608)
                      + +. ++...|++++|+..++++++..|.+..++.            .+|.++...|++++|+.+|++++..+|+++.++
T Consensus       142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  209 (327)
T 3cv0_A          142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA------------SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW  209 (327)
T ss_dssp             ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            3 44 578889999999999999999999887775            899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      ..+|.++...|++++|+..|+++++..|++..++..+|.++..+|++++|+.+|++++++.|+
T Consensus       210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.93  E-value=2.5e-25  Score=233.41  Aligned_cols=292  Identities=15%  Similarity=0.090  Sum_probs=231.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRI------EPHYH  332 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~  332 (608)
                      .+..++.+|..++..|++++|+.+|+++++..|++.    .++..+|.+|...|++++|+.+|++++++      .|...
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            456788999999999999999999999999999986    57999999999999999999999999987      56667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc-----------------HHHHHHH
Q 040048          333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD-----------------WNTLIQE  395 (608)
Q Consensus       333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~  395 (608)
                      .++..+|.+|...|++++|+.+|++++. +.+...........+..++.++...|+                 +++|+..
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLT-LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            8999999999999999999999999977 432222233345566666666666666                 5555555


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI  475 (608)
Q Consensus       396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (608)
                      +++++..                                   .+....    ......++..+|.++...|++++|+.+|
T Consensus       206 ~~~al~~-----------------------------------~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (411)
T 4a1s_A          206 YQENLKL-----------------------------------MRDLGD----RGAQGRACGNLGNTYYLLGDFQAAIEHH  246 (411)
T ss_dssp             HHHHHHH-----------------------------------HHHHTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHH-----------------------------------HHHcCC----HHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            5444332                                   110000    0012678889999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHH
Q 040048          476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFE  549 (608)
Q Consensus       476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~  549 (608)
                      ++++.+.+.......      ....+..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++...|+++
T Consensus       247 ~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  320 (411)
T 4a1s_A          247 QERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN  320 (411)
T ss_dssp             HHHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            999988765333111      12345689999999999999999999999876643      678899999999999999


Q ss_pred             HHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          550 KAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       550 ~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      +|+.+|++++.+.+.      ...++..+|.+|..+|++++|+.+|++++++.+...
T Consensus       321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence            999999999987543      256889999999999999999999999999877543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.93  E-value=6.2e-25  Score=222.20  Aligned_cols=290  Identities=15%  Similarity=0.101  Sum_probs=229.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRI------EPHYHR  333 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~  333 (608)
                      ...++..|..++..|++++|+.+|+++++.+|++    ..++..+|.++...|++++|+.++++++.+      .+....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            4578889999999999999999999999999998    467889999999999999999999999887      344577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--------------------HHHHH
Q 040048          334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--------------------WNTLI  393 (608)
Q Consensus       334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~  393 (608)
                      ++..+|.+|...|++++|+..+++++. +.+...........+..++.++...|+                    +++|+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            899999999999999999999999987 544433333345566666677777676                    55555


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048          394 QETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA  473 (608)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (608)
                      ..+++++...                            ...- ..+          ....++..+|.++...|++++|+.
T Consensus       164 ~~~~~a~~~~----------------------------~~~~-~~~----------~~~~~~~~l~~~~~~~~~~~~A~~  204 (338)
T 3ro2_A          164 DLYEENLSLV----------------------------TALG-DRA----------AQGRAFGNLGNTHYLLGNFRDAVI  204 (338)
T ss_dssp             HHHHHHHHHH----------------------------HHHT-CHH----------HHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHH----------------------------HhcC-CHH----------HHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5555444320                            0000 000          126788899999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCC
Q 040048          474 AIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQ  547 (608)
Q Consensus       474 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~  547 (608)
                      .+++++.+.+......      .....+..+|.++...|++++|+.++++++.+.+..      ..++..+|.++...|+
T Consensus       205 ~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (338)
T 3ro2_A          205 AHEQRLLIAKEFGDKA------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD  278 (338)
T ss_dssp             HHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence            9999998765433211      113345689999999999999999999999876544      6788999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          548 FEKAIEDCNAALNVRPGY------SKARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       548 ~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      +++|+.+|++++.+.+..      ..++..+|.+|..+|++++|..+|++++++.+..
T Consensus       279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            999999999999875432      5688999999999999999999999999988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.93  E-value=1.8e-22  Score=217.43  Aligned_cols=311  Identities=13%  Similarity=0.029  Sum_probs=270.4

Q ss_pred             CcchhHHHHhhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 040048          248 SAEPTSLCRALSTRMDPETLKIMGNEDYK----AGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVF  319 (608)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~  319 (608)
                      ..+|..+++......++++++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.
T Consensus        59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  136 (490)
T 2xm6_A           59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVK  136 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            34456666666667889999999999999    99999999999999875  578899999999999    899999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH----hhcHHH
Q 040048          320 ECREAIRIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR----TRDWNT  391 (608)
Q Consensus       320 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~  391 (608)
                      +|+++.+.  .++.+++.||.+|..    .+++++|+.+|+++++ .  .+      ..+++.++..+..    .+++++
T Consensus       137 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~--~~------~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          137 WFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-Q--GN------VWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T--TC------HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C--CC------HHHHHHHHHHHhcCCCCCcCHHH
Confidence            99999875  578999999999998    8899999999999976 3  23      5678888888888    899999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH---
Q 040048          392 LIQETRAAIAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA---  464 (608)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~---  464 (608)
                      |+..|+++++.+.   +..+..+|.+|..    .+++++|+.+|+++.+..            +..+++.+|.+|..   
T Consensus       206 A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~y~~g~~  270 (490)
T 2xm6_A          206 SAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG------------NSIAQFRLGYILEQGLA  270 (490)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHCCCC
Confidence            9999999998753   5788999999997    899999999999998753            37889999999999   


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 040048          465 -CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-----AKFSEAAAAYGDGLGLDPYNSVLLCNR  538 (608)
Q Consensus       465 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p~~~~~~~~l  538 (608)
                       .+++++|+.+|+++.+.  .+..+..            .+|.++...     +++++|+.+|+++++.  .++.+++.+
T Consensus       271 ~~~d~~~A~~~~~~a~~~--~~~~a~~------------~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l  334 (490)
T 2xm6_A          271 GAKEPLKALEWYRKSAEQ--GNSDGQY------------YLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANL  334 (490)
T ss_dssp             SSCCHHHHHHHHHHHHTT--TCHHHHH------------HHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHc--CCHHHHH------------HHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHH
Confidence             99999999999999865  4555554            889999998     9999999999999986  568899999


Q ss_pred             HHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          539 AACRSKLG---QFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       539 a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      |.+|...|   ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+..  ++.++..|
T Consensus       335 g~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L  405 (490)
T 2xm6_A          335 GAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL  405 (490)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence            99999977   899999999999987  679999999999999    899999999999999874  46555444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.93  E-value=4.7e-25  Score=228.26  Aligned_cols=254  Identities=9%  Similarity=0.005  Sum_probs=219.0

Q ss_pred             CccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhh--hCCCCHHHHHHHHHHHHHcCC-H
Q 040048          208 NTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRAL--STRMDPETLKIMGNEDYKAGN-F  280 (608)
Q Consensus       208 ~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~-~  280 (608)
                      .++..+|++..+  .+|.++...  +++|                   ...+..+  +.|.++.+|+.+|.++...|+ +
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~A-------------------l~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~  148 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDERSERA-------------------FKLTRDAIELNAANYTVWHFRRVLLKSLQKDL  148 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTCCCHHH-------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCCChHHH-------------------HHHHHHHHHhCccCHHHHHHHHHHHHHcccCH
Confidence            346667777666  677766554  3444                   4444433  358899999999999999997 9


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048          281 AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      ++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+.+|++++.
T Consensus       149 ~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~  228 (382)
T 2h6f_A          149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  228 (382)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048          361 EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD  440 (608)
Q Consensus       361 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  440 (608)
                       ++|.+                                                                          
T Consensus       229 -l~P~~--------------------------------------------------------------------------  233 (382)
T 2h6f_A          229 -EDVRN--------------------------------------------------------------------------  233 (382)
T ss_dssp             -HCTTC--------------------------------------------------------------------------
T ss_pred             -hCCCC--------------------------------------------------------------------------
Confidence             66655                                                                          


Q ss_pred             ccccccCCCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC--
Q 040048          441 ETTRFFGPIGNANLLVVRAQVNLA-CGRFEDA-----LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA--  512 (608)
Q Consensus       441 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g--  512 (608)
                                 ..+|..+|.++.. .|.+++|     +.+|++++.++|++..+|.            .+|.++...|  
T Consensus       234 -----------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~------------~l~~ll~~~g~~  290 (382)
T 2h6f_A          234 -----------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN------------YLKGILQDRGLS  290 (382)
T ss_dssp             -----------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHTTTCGG
T ss_pred             -----------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHccCcc
Confidence                       5666667777766 4443666     6999999999999999886            8899999888  


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHc
Q 040048          513 KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG--------Q-FEKAIEDCNAA-LNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       513 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~a~~~la~~~~~~  579 (608)
                      ++++|+..+.++ +.+|++..++..+|.+|..+|        + +++|+++|+++ ++++|.....|..++..+..+
T Consensus       291 ~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          291 KYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             GCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            699999999998 999999999999999999985        3 59999999999 999999999999999888764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=4.9e-22  Score=216.19  Aligned_cols=188  Identities=9%  Similarity=-0.006  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHH-------cCChH-------HHHHHhhcCCC-CCCcccccccCCCCcHHHH
Q 040048          391 TLIQETRAAIAGGADSAPQIYALQAEALLK-------LHKHQ-------EADETLKNGPN-FDVDETTRFFGPIGNANLL  455 (608)
Q Consensus       391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~-------~g~~~-------eA~~~l~~al~-~~p~~~~~~~~~~~~~~~~  455 (608)
                      .++..|++++...|.+ +.+|..+|..+..       .|+++       +|+..|+++++ ..|+.          ..+|
T Consensus       256 ~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~----------~~l~  324 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----------MLLY  324 (530)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----------HHHH
T ss_pred             HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----------HHHH
Confidence            5677899999988877 6899999999886       79987       99999999997 78874          8999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 040048          456 VVRAQVNLACGRFEDALAAIQKAAKQDSNNK-EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVL  534 (608)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~  534 (608)
                      ..+|.++...|++++|...|+++++..|.+. .+|.            .+|.++...|++++|+.+|+++++..|.....
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~  392 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI------------QYMKFARRAEGIKSGRMIFKKAREDARTRHHV  392 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHH------------HHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence            9999999999999999999999999999875 3554            77888889999999999999999998887777


Q ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048          535 LCNRAAC-RSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       535 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  601 (608)
                      +...+.+ +...|++++|+..|+++++..|+++.+|..++.++...|++++|..+|++++...|.+++
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence            7776665 446899999999999999999999999999999999999999999999999998776654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.92  E-value=2.5e-24  Score=224.56  Aligned_cols=292  Identities=14%  Similarity=0.070  Sum_probs=244.8

Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHH
Q 040048          296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH----RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK  371 (608)
Q Consensus       296 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~  371 (608)
                      .....+..+|.++...|++++|+.+|++++++.|++.    .++..+|.+|...|++++|+..|++++. +.+.......
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-LARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHhccccHH
Confidence            3456789999999999999999999999999999984    6899999999999999999999999876 4333223345


Q ss_pred             HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC-----ChHHHHHHHHHHHHHcCC--------------------hHH
Q 040048          372 SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD-----SAPQIYALQAEALLKLHK--------------------HQE  426 (608)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~la~~~~~~g~--------------------~~e  426 (608)
                      ....+..++.++...|++++|+..+++++...+.     ....++..+|.++...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            5788999999999999999999999999986442     224588999999999999                    999


Q ss_pred             HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048          427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN  506 (608)
Q Consensus       427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~  506 (608)
                      |+..+++++.+.+.....    .....++..+|.++...|++++|+..+++++.+.+.......      .+..+..+|.
T Consensus       166 A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~  235 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDR----AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYSNLGN  235 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHH
Confidence            999999887653221110    112678999999999999999999999999988765443221      1334569999


Q ss_pred             HHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q 040048          507 ALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY------SKARLRRAD  574 (608)
Q Consensus       507 ~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~  574 (608)
                      ++...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++++.+..      ..++..+|.
T Consensus       236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  315 (406)
T 3sf4_A          236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN  315 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            9999999999999999999886654      6789999999999999999999999999985543      678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          575 CFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       575 ~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      +|..+|++++|+.+|++++++.+.
T Consensus       316 ~~~~~g~~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          316 AYTALGNHDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.92  E-value=8.1e-24  Score=204.49  Aligned_cols=221  Identities=19%  Similarity=0.145  Sum_probs=162.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..+..++.+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      +...|++++|+..|++++. ..|.+                                                       
T Consensus       101 ~~~~~~~~~A~~~~~~~~~-~~~~~-------------------------------------------------------  124 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALR-AGMEN-------------------------------------------------------  124 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-HTCCS-------------------------------------------------------
T ss_pred             HHHhccHHHHHHHHHHHHH-hCCCC-------------------------------------------------------
Confidence            9999998888888888765 32222                                                       


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                                                    ..++..+|.++...|++++|+..+++++...|.+..++.           
T Consensus       125 ------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------  163 (243)
T 2q7f_A          125 ------------------------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF-----------  163 (243)
T ss_dssp             ------------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH-----------
T ss_pred             ------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH-----------
Confidence                                          556667788888888888888888888888887776654           


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                       .+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|+++++++|++..++..++.+....+
T Consensus       164 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          164 -QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             -HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence             778888888888888888888888888888888888888888888888888888888888888888777776655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.92  E-value=2.3e-22  Score=198.74  Aligned_cols=233  Identities=17%  Similarity=0.149  Sum_probs=182.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVFECREAIRIEPHYHRAHH  336 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~  336 (608)
                      +.++++++.+|..++..|++++|+.+|+++++  |+++.+++.+|.+|..    .+++++|+.+|+++++.+  ++.+++
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~   78 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH   78 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            56788899999999999999999999999888  7778888999999998    999999999999998875  788888


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048          337 RLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA  412 (608)
Q Consensus       337 ~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  412 (608)
                      .+|.+|..    .+++++|+..|++++. ..                                                 
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~-------------------------------------------------  108 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACD-LK-------------------------------------------------  108 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT-------------------------------------------------
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHH-cC-------------------------------------------------
Confidence            89998888    8888888888887754 10                                                 


Q ss_pred             HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHH
Q 040048          413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDALAAIQKAAKQDSNNKEV  488 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  488 (608)
                                                            +..++..+|.+|..    .+++++|+.+|+++++..  +..+
T Consensus       109 --------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  148 (273)
T 1ouv_A          109 --------------------------------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG  148 (273)
T ss_dssp             --------------------------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             --------------------------------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence                                                  15666667777777    777888888888877764  3333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 040048          489 NMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALN  560 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  560 (608)
                      +.            .+|.++..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++
T Consensus       149 ~~------------~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~  214 (273)
T 1ouv_A          149 CT------------ILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE  214 (273)
T ss_dssp             HH------------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred             HH------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence            32            67777777    78888888888888776  356777888888888    8888888888888887


Q ss_pred             cCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          561 VRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       561 ~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      ..|  +.+++.+|.+|..    .+++++|+.+|++++++.|++...+
T Consensus       215 ~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          215 LEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             TTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             CCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            755  7778888888887    8888888888888888877665544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.91  E-value=8.7e-25  Score=215.55  Aligned_cols=248  Identities=10%  Similarity=-0.042  Sum_probs=197.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 040048          273 EDYKAGNFAEALALYDAAISID----PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEV  348 (608)
Q Consensus       273 ~~~~~g~~~~Al~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  348 (608)
                      .+...|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+|...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3444578899999999998873    455778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH
Q 040048          349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD  428 (608)
Q Consensus       349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~  428 (608)
                      ++|+..|++++. ++|.+                                         ..++..+|.++...|++++|+
T Consensus        94 ~~A~~~~~~al~-~~~~~-----------------------------------------~~~~~~la~~~~~~g~~~~A~  131 (275)
T 1xnf_A           94 DAAYEAFDSVLE-LDPTY-----------------------------------------NYAHLNRGIALYYGGRDKLAQ  131 (275)
T ss_dssp             HHHHHHHHHHHH-HCTTC-----------------------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHh-cCccc-----------------------------------------cHHHHHHHHHHHHhccHHHHH
Confidence            999998888877 55554                                         345666667777777777777


Q ss_pred             HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048          429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL  508 (608)
Q Consensus       429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~  508 (608)
                      ..|+++++..|++          ......++ +....|++++|+..+++++...|.+...+             .++.++
T Consensus       132 ~~~~~a~~~~~~~----------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~  187 (275)
T 1xnf_A          132 DDLLAFYQDDPND----------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGW-------------NIVEFY  187 (275)
T ss_dssp             HHHHHHHHHCTTC----------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHH-------------HHHHHH
T ss_pred             HHHHHHHHhCCCC----------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHH-------------HHHHHH
Confidence            7777776666653          33333333 34667999999999999999999886654             567788


Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          509 FKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA  584 (608)
Q Consensus       509 ~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~  584 (608)
                      ...+++++|+..+++++...|..    +.++..+|.++...|++++|+.+|++++.++|++...   .+.++..+|++++
T Consensus       188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~  264 (275)
T 1xnf_A          188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQ  264 (275)
T ss_dssp             TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHh
Confidence            88999999999999999887743    6899999999999999999999999999999977443   3778899999999


Q ss_pred             HHHHH
Q 040048          585 SMQDY  589 (608)
Q Consensus       585 A~~~~  589 (608)
                      |++.|
T Consensus       265 a~~~~  269 (275)
T 1xnf_A          265 DQDDL  269 (275)
T ss_dssp             C----
T ss_pred             hHHHH
Confidence            99887

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=3.9e-23  Score=199.67  Aligned_cols=212  Identities=17%  Similarity=0.151  Sum_probs=178.3

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048          298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL  377 (608)
Q Consensus       298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~  377 (608)
                      +..++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++++. ..|.            
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~------------   89 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE-LDSS------------   89 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT------------
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCc------------
Confidence            456888899999999999999999999999999999999999999999999999988888765 2222            


Q ss_pred             HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048          378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV  457 (608)
Q Consensus       378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~  457 (608)
                                                                                               ...++..
T Consensus        90 -------------------------------------------------------------------------~~~~~~~   96 (243)
T 2q7f_A           90 -------------------------------------------------------------------------AATAYYG   96 (243)
T ss_dssp             -------------------------------------------------------------------------CHHHHHH
T ss_pred             -------------------------------------------------------------------------chHHHHH
Confidence                                                                                     2678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN  537 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  537 (608)
                      +|.++...|++++|+..|+++++..|.+..++.            .+|.++...|++++|+.+|++++...|.+..++..
T Consensus        97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  164 (243)
T 2q7f_A           97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY------------MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ  164 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHH------------HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHH
Confidence            999999999999999999999999999988765            88999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       538 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|.++...|++++|+..|++++...|++..++..+|.+|...|++++|+.+|+++++++|++..++..+.
T Consensus       165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999987764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.91  E-value=9.4e-23  Score=198.54  Aligned_cols=209  Identities=15%  Similarity=0.105  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      +.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+|.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            66788888888888888888888888888888888888888888888888888888888888888877777777777777


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK  423 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~  423 (608)
                      ..|++++|+..|++++. . +                                                           
T Consensus       117 ~~g~~~~A~~~~~~~~~-~-~-----------------------------------------------------------  135 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQ-D-T-----------------------------------------------------------  135 (252)
T ss_dssp             HTTCHHHHHHHHHHHTT-C-T-----------------------------------------------------------
T ss_pred             HHhHHHHHHHHHHHHHh-C-c-----------------------------------------------------------
Confidence            77777777777777653 0 0                                                           


Q ss_pred             hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                                   ..|.          ...++..+|.++...|++++|+..|+++++..|.+..++.            .
T Consensus       136 -------------~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~  180 (252)
T 2ho1_A          136 -------------LYPE----------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL------------E  180 (252)
T ss_dssp             -------------TCTT----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH------------H
T ss_pred             -------------cCcc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH------------H
Confidence                         0111          1455555666666666666666666665555555544433            4


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA  568 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a  568 (608)
                      +|.++...|++++|+.+|++++...|.+..++..++.++...|++++|+.++++++++.|+++.+
T Consensus       181 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence            45555555555555555555555555555555555555555555555555555555555544443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.91  E-value=1.9e-22  Score=201.51  Aligned_cols=250  Identities=14%  Similarity=0.092  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI--EPHYHRAHHRLANL  341 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~  341 (608)
                      .+....++.+++..|++++|+..++.   .+|....++..++..+...|++++|+..+++++..  +|+++.+++.+|.+
T Consensus        34 ~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~  110 (291)
T 3mkr_A           34 VERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI  110 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            35678889999999999999998866   25556778889999999999999999999999875  69999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      +...|++++|+..|++      |.+                                         ..++..+|.++..+
T Consensus       111 ~~~~g~~~~Al~~l~~------~~~-----------------------------------------~~~~~~l~~~~~~~  143 (291)
T 3mkr_A          111 YFYDQNPDAALRTLHQ------GDS-----------------------------------------LECMAMTVQILLKL  143 (291)
T ss_dssp             HHHTTCHHHHHHHHTT------CCS-----------------------------------------HHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHhC------CCC-----------------------------------------HHHHHHHHHHHHHC
Confidence            9999999999999976      333                                         34566677777777


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA--QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA  499 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  499 (608)
                      |++++|+..|+++++.+|++          ....+..+  .++...|++++|+..|+++++..|++..++.         
T Consensus       144 g~~~~A~~~l~~~~~~~p~~----------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~---------  204 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDA----------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN---------  204 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH---------
T ss_pred             CCHHHHHHHHHHHHhhCcCc----------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH---------
Confidence            77777777777777776653          22222222  3344568999999999999999999988876         


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK-AIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                         .+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++ +..+++++++++|+++.+.    .+..+
T Consensus       205 ---~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~  277 (291)
T 3mkr_A          205 ---GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAK  277 (291)
T ss_dssp             ---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHH
T ss_pred             ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHH
Confidence               899999999999999999999999999999999999999999999976 5789999999999998764    35666


Q ss_pred             cCCHHHHHHHH
Q 040048          579 IEKWEASMQDY  589 (608)
Q Consensus       579 ~g~~~~A~~~~  589 (608)
                      .+.|+++..-|
T Consensus       278 ~~~fd~~~~~~  288 (291)
T 3mkr_A          278 ENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            66677766555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=3.5e-22  Score=190.18  Aligned_cols=104  Identities=18%  Similarity=0.072  Sum_probs=62.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP-GYSKARLRRADCFAKIEK  581 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~  581 (608)
                      .+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|++++...| ++..++..++.++...|+
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN  197 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence            4555555555555555555555555555555566666666666666666666666666666 566666666666666666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          582 WEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       582 ~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      +++|..+++.+.+.+|+++.+...|
T Consensus       198 ~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          198 AQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            6666666666666666666655444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=4e-23  Score=191.33  Aligned_cols=175  Identities=15%  Similarity=0.182  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048          408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE  487 (608)
Q Consensus       408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  487 (608)
                      +.+|..+|.++...|++++|+..|+++++++|++          ..++..+|.++...|++++|+..+.+++...|++..
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~   74 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE   74 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH
Confidence            5789999999999999999999999999999985          899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                      ++.            .+|.++...+++++|+..+.+++..+|.+..++..+|.++..+|++++|++.|+++++++|+++.
T Consensus        75 ~~~------------~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~  142 (184)
T 3vtx_A           75 AYY------------ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR  142 (184)
T ss_dssp             HHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence            876            88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      +|+.+|.+|..+|++++|+.+|+++++++|+++....
T Consensus       143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~l  179 (184)
T 3vtx_A          143 AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYEL  179 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHH
Confidence            9999999999999999999999999999998876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=4.9e-23  Score=202.86  Aligned_cols=241  Identities=15%  Similarity=0.054  Sum_probs=196.9

Q ss_pred             cchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHcCCHHHHHHHHH
Q 040048          249 AEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS----YRSNKTAALIALGRLLEAVFECR  322 (608)
Q Consensus       249 ~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~  322 (608)
                      ++|...+...+  .|.++.+++.+|.+++..|++++|+.+|++++. .|.++.    ++..+|.++...|++++|+.+|+
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~   98 (272)
T 3u4t_A           20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ   98 (272)
T ss_dssp             HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            33444554442  366788999999999999999999999999999 444443    49999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048          323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG  402 (608)
Q Consensus       323 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  402 (608)
                      ++++++|++..++..+|.+|...|++++|+..|++++. .+|.+                                    
T Consensus        99 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~------------------------------------  141 (272)
T 3u4t_A           99 AAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-PTTTD------------------------------------  141 (272)
T ss_dssp             HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC-SSCCC------------------------------------
T ss_pred             HHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh-cCCCc------------------------------------
Confidence            99999999999999999999999999999999999999 77776                                    


Q ss_pred             CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 040048          403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR---FEDALAAIQKAA  479 (608)
Q Consensus       403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al  479 (608)
                           +.++..+|......+++++|+..|+++++..|++          ..++..+|.++...|+   +++|+..|++++
T Consensus       142 -----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          142 -----PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI----------YIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc----------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence                 3556666733444457888888888888777764          7889999999999999   999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC
Q 040048          480 KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG  546 (608)
Q Consensus       480 ~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g  546 (608)
                      +.....+...    ......++..+|.++...|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus       207 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          207 EVCAPGGAKY----KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHGGGGGGG----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHhcccccc----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            9874443321    11235778899999999999999999999999999999999998887765543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=7.4e-23  Score=219.16  Aligned_cols=216  Identities=19%  Similarity=0.169  Sum_probs=192.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRL-LEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK  356 (608)
Q Consensus       278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  356 (608)
                      +.+++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|+.+|.+|...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3467788888888888888899999999999999999 999999999999999999999999999999999999999888


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048          357 HAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN  436 (608)
Q Consensus       357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  436 (608)
                      +++. ++|+                                                                       
T Consensus       162 ~al~-~~p~-----------------------------------------------------------------------  169 (474)
T 4abn_A          162 GALT-HCKN-----------------------------------------------------------------------  169 (474)
T ss_dssp             HHHT-TCCC-----------------------------------------------------------------------
T ss_pred             HHHh-hCCC-----------------------------------------------------------------------
Confidence            8877 4443                                                                       


Q ss_pred             CCCcccccccCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 040048          437 FDVDETTRFFGPIGNANLLVVRAQVNLAC---------GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA  507 (608)
Q Consensus       437 ~~p~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~  507 (608)
                                     ..++..+|.++...         |++++|+..|+++++++|++..++.            .+|.+
T Consensus       170 ---------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~  222 (474)
T 4abn_A          170 ---------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY------------ILGNA  222 (474)
T ss_dssp             ---------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH------------HHHHH
Confidence                           34445556666666         8999999999999999999998886            89999


Q ss_pred             HHHc--------CCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          508 LFKQ--------AKFSEAAAAYGDGLGLDP---YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       508 ~~~~--------g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      +...        |++++|+.+|+++++++|   .++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++
T Consensus       223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~  302 (474)
T 4abn_A          223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL  302 (474)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999        999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHH
Q 040048          577 AKIEKWEASMQDYEIL  592 (608)
Q Consensus       577 ~~~g~~~~A~~~~~~a  592 (608)
                      ..+|++++|++.+.+.
T Consensus       303 ~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          303 EFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999876553

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=2.8e-21  Score=188.03  Aligned_cols=218  Identities=16%  Similarity=0.096  Sum_probs=201.7

Q ss_pred             hcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHH
Q 040048          292 SIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA  370 (608)
Q Consensus       292 ~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~  370 (608)
                      ..+|.. +.+++.+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|++++|+..|++++. ..|.+    
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~----  104 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA-SDSRN----  104 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC----
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCc----
Confidence            345665 788999999999999999999999999999999999999999999999999999999999987 66654    


Q ss_pred             HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048          371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIG  450 (608)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~  450 (608)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (252)
T 2ho1_A          105 --------------------------------------------------------------------------------  104 (252)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAK--QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD  528 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  528 (608)
                       ..++..+|.++...|++++|+.+|++++.  ..|.+..++.            .+|.++...|++++|+.+|++++...
T Consensus       105 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          105 -ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE------------NLGLVSLQMKKPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence             56677788999999999999999999999  6676666654            89999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       529 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      |.+..++..+|.++...|++++|+.+|+++++..|++..++..++.++...|++++|..+++++++++|+++.+...+.
T Consensus       172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  250 (252)
T 2ho1_A          172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA  250 (252)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.5e-22  Score=197.01  Aligned_cols=208  Identities=15%  Similarity=0.173  Sum_probs=185.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA  334 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  334 (608)
                      .++.+++.+|.++...|++++|+.+|+++++++|+.       +.++..+|.++...|++++|+.+|++++.+.|.    
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----  111 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----  111 (258)
T ss_dssp             CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----
Confidence            678899999999999999999999999999998877       789999999999999999999999999999987    


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 040048          335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ  414 (608)
Q Consensus       335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l  414 (608)
                          +.++...|++++|+..+++++. .+|.+                                                
T Consensus       112 ----~~~~~~~~~~~~a~~~~~~~~~-~~~~~------------------------------------------------  138 (258)
T 3uq3_A          112 ----ADILTKLRNAEKELKKAEAEAY-VNPEK------------------------------------------------  138 (258)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHH-CCHHH------------------------------------------------
T ss_pred             ----hHHHHHHhHHHHHHHHHHHHHH-cCcch------------------------------------------------
Confidence                4567777788888888887765 44433                                                


Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK  494 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  494 (608)
                                                           ..++..+|.++...|++++|+..|++++...|.+..++.    
T Consensus       139 -------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----  177 (258)
T 3uq3_A          139 -------------------------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS----  177 (258)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----
T ss_pred             -------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH----
Confidence                                                 677788899999999999999999999999999887765    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHH
Q 040048          495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR------PGYSKA  568 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a  568 (608)
                              .+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|++++++.      |++..+
T Consensus       178 --------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~  249 (258)
T 3uq3_A          178 --------NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI  249 (258)
T ss_dssp             --------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             --------HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHH
Confidence                    889999999999999999999999999999999999999999999999999999999998      888888


Q ss_pred             HHHHHHH
Q 040048          569 RLRRADC  575 (608)
Q Consensus       569 ~~~la~~  575 (608)
                      +..++.+
T Consensus       250 ~~~l~~~  256 (258)
T 3uq3_A          250 DQLYYKA  256 (258)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            8777765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=9.9e-22  Score=198.19  Aligned_cols=251  Identities=12%  Similarity=0.025  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 040048          281 AEALALYDAAISIDPNKASYRSNKTAALIA-------LGRL-------LEAVFECREAIR-IEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~eA~~~~~~al~-~~p~~~~~~~~la~~~~~~  345 (608)
                      ++|+..|++++..+|+++.+|+.+|..+..       .|++       ++|+..|+++++ ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999999874       5886       999999999999 7999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048          346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ  425 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~  425 (608)
                      |++++|+..|++++. +.|.+.                                        ..+|..+|.++...|+++
T Consensus       113 ~~~~~A~~~~~~al~-~~p~~~----------------------------------------~~~~~~~~~~~~~~~~~~  151 (308)
T 2ond_A          113 MKYEKVHSIYNRLLA-IEDIDP----------------------------------------TLVYIQYMKFARRAEGIK  151 (308)
T ss_dssp             TCHHHHHHHHHHHHT-SSSSCT----------------------------------------HHHHHHHHHHHHHHHCHH
T ss_pred             CCHHHHHHHHHHHHh-ccccCc----------------------------------------cHHHHHHHHHHHHhcCHH
Confidence            999999999999998 777651                                        125666677777777777


Q ss_pred             HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048          426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA-CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN  504 (608)
Q Consensus       426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l  504 (608)
                      +|+..|+++++..|..          ..++...+.+... .|++++|+..|+++++..|++..++.            .+
T Consensus       152 ~A~~~~~~a~~~~p~~----------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~  209 (308)
T 2ond_A          152 SGRMIFKKAREDARTR----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL------------AY  209 (308)
T ss_dssp             HHHHHHHHHHTSTTCC----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH------------HH
T ss_pred             HHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HH
Confidence            7777777777776653          4556555555433 79999999999999999999988876            88


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhcC---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          505 GNALFKQAKFSEAAAAYGDGLGL---DP-YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       505 g~~~~~~g~~~eA~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      |..+...|++++|+.+|++++..   .| ....+|..++.++...|++++|...++++++..|++..... ++.+     
T Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~-----  283 (308)
T 2ond_A          210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL-----  283 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-----
Confidence            89999999999999999999995   45 37889999999999999999999999999999998543321 1222     


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          581 KWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       581 ~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                            ....+.+.++|++++..+.|
T Consensus       284 ------~~r~~~l~~~P~~~~~ln~l  303 (308)
T 2ond_A          284 ------VDRYKFMDLYPCSASELKAL  303 (308)
T ss_dssp             ------HTTTCBTTBCSSCHHHHHTT
T ss_pred             ------HHHHHhcccCCCCHHHHHhc
Confidence                  11226777999999988876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=5e-21  Score=182.16  Aligned_cols=216  Identities=12%  Similarity=0.007  Sum_probs=190.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.++.+++.+|.+++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++..+|++..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            55688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048          341 LYLRL-GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL  419 (608)
Q Consensus       341 ~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~  419 (608)
                      ++... |++++|+..|++++. . |.                                                      
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~-~-~~------------------------------------------------------  108 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALA-D-PT------------------------------------------------------  108 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHT-S-TT------------------------------------------------------
T ss_pred             HHHHhcCcHHHHHHHHHHHHc-C-cC------------------------------------------------------
Confidence            99999 999999998888754 1 11                                                      


Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA  499 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  499 (608)
                                        .|.          ...++..+|.++...|++++|+..|+++++..|.+..++.         
T Consensus       109 ------------------~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------  151 (225)
T 2vq2_A          109 ------------------YPT----------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK---------  151 (225)
T ss_dssp             ------------------CSC----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH---------
T ss_pred             ------------------Ccc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH---------
Confidence                              111          2677888999999999999999999999999999877765         


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDP-YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR  572 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  572 (608)
                         .+|.++...|++++|+.+|++++...| .+...+..++.++...|++++|..+++.+++..|+++.+...+
T Consensus       152 ---~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          152 ---ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             ---HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence               889999999999999999999999999 8999999999999999999999999999999999998776554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=6e-22  Score=183.31  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ..++..+|.++...++++.|+..+.+++...|.+..++.            .+|.++...|++++|+..|+++++++|.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~~l~~~p~~  140 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYY------------KLGLVYDSMGEHDKAIEAYEKTISIKPGF  140 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH------------HHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence            344444555555555555555555566666666655554            55666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      +.+++++|.+|..+|++++|+.+|+++++++|++
T Consensus       141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            6666666666666666666666666666666654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=1.8e-20  Score=179.83  Aligned_cols=144  Identities=10%  Similarity=0.081  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY-  530 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-  530 (608)
                      ..++..+|.++...|++++|+..|+++++++|++......     .+..+..+|.++...|++++|+.+|+++++++|+ 
T Consensus        76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  150 (228)
T 4i17_A           76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL-----YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK  150 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH-----HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence            3444445555555555555555555555566655543221     1223458999999999999999999999999999 


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          531 -NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       531 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                       ++.+++++|.+|...|     ...++++..+.+.....+  .+......+.+++|+.+|+++++++|++.++...|.
T Consensus       151 ~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          151 WKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence             9999999999997655     456778888877775554  445566778899999999999999999999887663

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=6.1e-21  Score=183.12  Aligned_cols=105  Identities=19%  Similarity=0.147  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDP-NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      +.+++.++.+|.+++..|+|++|+.+|+++++++| .+..+++.+|.++..+|++++|+.+|+++++++|++..++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            56789999999999999999999999999999999 88999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          340 NLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      .+|..+|++++|+..|++++. ++|++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~-~~p~~  109 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIK-AVPGN  109 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HSTTC
T ss_pred             HHHHHcccHHHHHHHHHHHHH-HCCCc
Confidence            999999999999999999988 77776

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.87  E-value=1.6e-21  Score=202.84  Aligned_cols=315  Identities=10%  Similarity=-0.052  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CChhHH--HHH--HHHHHHcCCHHHHH-----------HHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDP---NKASYR--SNK--TAALIALGRLLEAV-----------FECREAI  325 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~eA~-----------~~~~~al  325 (608)
                      .....+-...+...+++++|..+++++.+.-+   .+....  +.+  .......+++..+.           ..++++-
T Consensus        12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~   91 (383)
T 3ulq_A           12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID   91 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence            34455566677899999999999999866432   233332  222  22233344444444           5555533


Q ss_pred             hhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHH
Q 040048          326 RIEPHYHR------AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAA  399 (608)
Q Consensus       326 ~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  399 (608)
                      . .|....      .++.+|.++...|++++|+..|++++. +.............+..+|.++...|+++.|+..+.++
T Consensus        92 ~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a  169 (383)
T 3ulq_A           92 K-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES-KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA  169 (383)
T ss_dssp             H-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             h-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2 333222      445599999999999999999999988 53332233445788999999999999999999999999


Q ss_pred             HHcCCCC------hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048          400 IAGGADS------APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA  473 (608)
Q Consensus       400 l~~~~~~------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  473 (608)
                      ++..+..      ...++..+|.++...|++++|+..|++++.+.+......    ....++..+|.+|...|++++|+.
T Consensus       170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ----LMGRTLYNIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence            9874332      245789999999999999999999999998765432111    125789999999999999999999


Q ss_pred             HHHHHHHh-----C-CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----CCCHHHHHHHHHHH
Q 040048          474 AIQKAAKQ-----D-SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-----PYNSVLLCNRAACR  542 (608)
Q Consensus       474 ~~~~al~~-----~-p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~la~~~  542 (608)
                      +|++++.+     + |....            ++..+|.++...|++++|+.+|++++.+.     |.....+..+|.++
T Consensus       246 ~~~~al~~~~~~~~~~~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~  313 (383)
T 3ulq_A          246 YFKRAIAVFEESNILPSLPQ------------AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY  313 (383)
T ss_dssp             HHHHHHHHHHHTTCGGGHHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccchhHHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999995     3 33323            33599999999999999999999999873     33344467899999


Q ss_pred             HHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          543 SKLGQ---FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       543 ~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      ...|+   +++|+..+++. ...|....++..+|.+|..+|++++|..+|++++++..
T Consensus       314 ~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          314 LSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             TSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             hCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999   88888888877 33445567889999999999999999999999998754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=8.1e-20  Score=198.63  Aligned_cols=317  Identities=9%  Similarity=-0.005  Sum_probs=251.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048          259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL  338 (608)
Q Consensus       259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  338 (608)
                      ..|.+..+|..++.. ...|++++|...|+++++.+|.+..+|..++..+...|++++|+..|++++...| +...|..+
T Consensus         8 ~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~   85 (530)
T 2ooe_A            8 ENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY   85 (530)
T ss_dssp             HCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred             hCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence            358899999999984 7899999999999999999999999999999999999999999999999999999 67888888


Q ss_pred             HH-HHHHcCCHHHHHH----HHHHhCCC--CCchhHHHHHHHHHHHHHhHHHHH---------hhcHHHHHHHHHHHHHc
Q 040048          339 AN-LYLRLGEVEKAIY----HFKHAGPE--ADQVDIAKAKSLQAHLNKCTDAKR---------TRDWNTLIQETRAAIAG  402 (608)
Q Consensus       339 a~-~~~~~g~~~~A~~----~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~  402 (608)
                      +. +....|++++|.+    .|++++..  .++..      ...|...+.....         .|+++.|...|++++..
T Consensus        86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~  159 (530)
T 2ooe_A           86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS------YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN  159 (530)
T ss_dssp             HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC------HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc------HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence            85 4456788777665    77776531  23333      2233333333332         68889999999999884


Q ss_pred             CCCCh-HHHHHHHHHHH-------------HHcCChHHHH----------------------------------------
Q 040048          403 GADSA-PQIYALQAEAL-------------LKLHKHQEAD----------------------------------------  428 (608)
Q Consensus       403 ~~~~~-~~~~~~la~~~-------------~~~g~~~eA~----------------------------------------  428 (608)
                       |... ..++.......             ...+++.+|.                                        
T Consensus       160 -P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~  238 (530)
T 2ooe_A          160 -PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ  238 (530)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred             -hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence             5432 22332222111             0122344443                                        


Q ss_pred             --------------------HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHH
Q 040048          429 --------------------ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA-------CGRFE-------DALAA  474 (608)
Q Consensus       429 --------------------~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~  474 (608)
                                          ..|++++...|.          ++.+|+.+|.++..       .|+++       +|+..
T Consensus       239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~----------~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~  308 (530)
T 2ooe_A          239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH----------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI  308 (530)
T ss_dssp             HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCCccCCcchhHHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence                                333333333333          48899999999886       79987       99999


Q ss_pred             HHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 040048          475 IQKAAK-QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS-VLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       475 ~~~al~-~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~  552 (608)
                      |+++++ ..|++..+|.            .+|.++...|++++|..+|+++++..|.++ .+|..+|.++.+.|++++|+
T Consensus       309 ~~~Al~~~~p~~~~l~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~  376 (530)
T 2ooe_A          309 YERAISTLLKKNMLLYF------------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR  376 (530)
T ss_dssp             HHHHTTTTCSSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence            999997 8999988886            889999999999999999999999999985 69999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          553 EDCNAALNVRPGYSKARLRRADC-FAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       553 ~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ..|+++++..|.....+...+.+ +...|++++|..+|+++++.+|+++.++..+
T Consensus       377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~  431 (530)
T 2ooe_A          377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY  431 (530)
T ss_dssp             HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999888888777766 4469999999999999999999999988765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=1.5e-20  Score=189.57  Aligned_cols=229  Identities=10%  Similarity=-0.014  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh
Q 040048          315 LEAVFECREAIRIEPHYHRAHHRLANLYLRL-------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR  387 (608)
Q Consensus       315 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~  387 (608)
                      ++|+..|++++..+|+++.+|+.+|.++...       |+++                                  ...+
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~----------------------------------~~~~   78 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN----------------------------------NAKL   78 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH----------------------------------HHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh----------------------------------hccc
Confidence            7899999999999999999999999998754       4430                                  1112


Q ss_pred             cHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHH-HHHHHHHHHHHc
Q 040048          388 DWNTLIQETRAAIA-GGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNAN-LLVVRAQVNLAC  465 (608)
Q Consensus       388 ~~~~A~~~~~~al~-~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~-~~~~la~~~~~~  465 (608)
                      .+++|+..|++++. ..|++ ..+|..+|.++...|++++|...|+++++..|.+          .. +|..+|.++...
T Consensus        79 ~~~~A~~~~~rAl~~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~~~~~~  147 (308)
T 2ond_A           79 FSDEAANIYERAISTLLKKN-MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----------PTLVYIQYMKFARRA  147 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----------THHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----------ccHHHHHHHHHHHHh
Confidence            33445555555555 34544 5688899999999999999999999999998874          54 899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048          466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF-KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK  544 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  544 (608)
                      |++++|+..|+++++..|....++.            ..+.+.. ..|++++|+.+|+++++.+|+++.+|..+|.++..
T Consensus       148 ~~~~~A~~~~~~a~~~~p~~~~~~~------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          148 EGIKSGRMIFKKAREDARTRHHVYV------------TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHH------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999999999998876654            3444433 37999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          545 LGQFEKAIEDCNAALNV---RPG-YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       545 ~g~~~~A~~~~~~al~~---~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      .|++++|+..|++++..   .|+ ...+|..++..+...|++++|...++++++.+|++.
T Consensus       216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence            99999999999999995   553 788999999999999999999999999999999854

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.87  E-value=4.9e-21  Score=188.52  Aligned_cols=229  Identities=16%  Similarity=0.031  Sum_probs=196.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .++.+++.+|.+++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  120 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |...|++++|+..|++++. +.|.+...      .... ......|++++|+..+.+++...|....  ...++.++...
T Consensus       121 ~~~~g~~~~A~~~~~~a~~-~~~~~~~~------~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~  190 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQ-DDPNDPFR------SLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWNIVEFYLGN  190 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-HCTTCHHH------HHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST--HHHHHHHHTTS
T ss_pred             HHHhccHHHHHHHHHHHHH-hCCCChHH------HHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHh
Confidence            9999999999999999998 88887421      1112 2336679999999999999998887642  34478888899


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      ++.++|+..+++++...|....      ....++..+|.++...|++++|+..|++++..+|++...             
T Consensus       191 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------  251 (275)
T 1xnf_A          191 ISEQTLMERLKADATDNTSLAE------HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE-------------  251 (275)
T ss_dssp             SCHHHHHHHHHHHCCSHHHHHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH-------------
T ss_pred             cCHHHHHHHHHHHhcccccccc------cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH-------------
Confidence            9999999999999998765211      126889999999999999999999999999999987553             


Q ss_pred             HHHHHHHHHcCCHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAY  521 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~  521 (608)
                        .+.++...|++++|+..|
T Consensus       252 --~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 --HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --HHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHhhHHHH
Confidence              357888899999999887

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.87  E-value=2.4e-20  Score=198.35  Aligned_cols=299  Identities=14%  Similarity=0.088  Sum_probs=235.6

Q ss_pred             hHHHHhhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH---HHHHHH
Q 040048          252 TSLCRALSTRMDPETLKIMGNEDYKAG-----NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA---VFECRE  323 (608)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA---~~~~~~  323 (608)
                      ..+++..... ++++++.+|.+++..+     ++++|+.+|+++++.  +++.+++.+|.+|...+...++   ...+.+
T Consensus        58 ~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~  134 (452)
T 3e4b_A           58 EATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ  134 (452)
T ss_dssp             --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred             HHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            3333333333 7888999999777766     899999999999984  4566999999999988765544   444444


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh---cHHHHHHHH
Q 040048          324 AIRIEPHYHRAHHRLANLYLRLGEV----EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR---DWNTLIQET  396 (608)
Q Consensus       324 al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~  396 (608)
                      +..  +.++.+++.+|.+|...+.+    +++..+++.+.. .+|.         +++.++.++...|   ++++|+..|
T Consensus       135 a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~---------a~~~Lg~~~~~~g~~~~~~~A~~~~  202 (452)
T 3e4b_A          135 WQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDI---------CYVELATVYQKKQQPEQQAELLKQM  202 (452)
T ss_dssp             HHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTT---------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHH---------HHHHHHHHHHHcCCcccHHHHHHHH
Confidence            443  34578999999999999854    455555666655 4443         6788899999999   999999999


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHc----CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHH-H--HHcCCHH
Q 040048          397 RAAIAGGADSAPQIYALQAEALLKL----HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQV-N--LACGRFE  469 (608)
Q Consensus       397 ~~al~~~~~~~~~~~~~la~~~~~~----g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~  469 (608)
                      +++.+.++... ..++.+|.+|...    +++++|+.+|+++.   |.          ++.+++.+|.+ +  ...++++
T Consensus       203 ~~aa~~g~~~a-~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g----------~~~a~~~Lg~~~~~~~~~~d~~  268 (452)
T 3e4b_A          203 EAGVSRGTVTA-QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG----------YPASWVSLAQLLYDFPELGDVE  268 (452)
T ss_dssp             HHHHHTTCSCH-HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG----------STHHHHHHHHHHHHSGGGCCHH
T ss_pred             HHHHHCCCHHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC----------CHHHHHHHHHHHHhCCCCCCHH
Confidence            99999988773 5567889999766    79999999999998   54          38899999998 4  5789999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048          470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA-----KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK  544 (608)
Q Consensus       470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  544 (608)
                      +|+.+|+++.+..  +..+..            .+|.+|. .|     ++++|+.+|+++.   +.++.+++++|.+|..
T Consensus       269 ~A~~~~~~Aa~~g--~~~A~~------------~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          269 QMMKYLDNGRAAD--QPRAEL------------LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHHHHTT--CHHHHH------------HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCC--CHHHHH------------HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            9999999998654  666654            8999998 56     9999999999999   8899999999999887


Q ss_pred             ----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 040048          545 ----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       545 ----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~  599 (608)
                          ..++++|+.+|+++.+.  .++.+.++||.+|..    ..++++|..+|+++.+..+..
T Consensus       331 G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~  391 (452)
T 3e4b_A          331 GYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE  391 (452)
T ss_dssp             TTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred             CCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence                44999999999999874  568899999999985    469999999999999876543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.87  E-value=3e-22  Score=213.06  Aligned_cols=298  Identities=13%  Similarity=-0.000  Sum_probs=211.8

Q ss_pred             hhHHHHhhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-----CHHHHHHHHH
Q 040048          251 PTSLCRALSTRMDPETLKIMGNEDYKAGNF---AEALALYDAAISIDPNKASYRSNKTAALIALG-----RLLEAVFECR  322 (608)
Q Consensus       251 a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~~~  322 (608)
                      |..+++....+.++++++.+|.+++..|++   ++|+.+|+++++.   ++.+++.+|.++...+     ++++|+.+|+
T Consensus        22 A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~   98 (452)
T 3e4b_A           22 AQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLK   98 (452)
T ss_dssp             HHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH
Confidence            455555555556777788888888888877   7888888888865   5677888888666655     6778888888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH----HH
Q 040048          323 EAIRIEPHYHRAHHRLANLYLRLGEVEKA---IYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI----QE  395 (608)
Q Consensus       323 ~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~----~~  395 (608)
                      ++++..  ++.+++.||.+|...+..+++   ...+.++..   +.      ...+++.++.++...+.+++++    ..
T Consensus        99 ~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~---~g------~~~a~~~Lg~~y~~~~~~~~~~~~a~~~  167 (452)
T 3e4b_A           99 KAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA---AG------YPEAGLAQVLLYRTQGTYDQHLDDVERI  167 (452)
T ss_dssp             HHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH---HT------CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred             HHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---CC------CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence            887743  344788888888776654433   333333321   11      1456777888888887554444    44


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHcC---ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc----CCH
Q 040048          396 TRAAIAGGADSAPQIYALQAEALLKLH---KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC----GRF  468 (608)
Q Consensus       396 ~~~al~~~~~~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~----g~~  468 (608)
                      +..+...+|    .+++.+|.+|...|   ++++|+.+|+++.+..+..          +..++.+|.+|...    +++
T Consensus       168 ~~~a~~~~~----~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~----------a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          168 CKAALNTTD----ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT----------AQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             HHHHTTTCT----THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC----------HHHHHHHHHHHTCGGGSSCCH
T ss_pred             HHHHHcCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCCCCCH
Confidence            444444444    38899999999999   9999999999999888764          77778999999766    799


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 040048          469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA-L--FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL  545 (608)
Q Consensus       469 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  545 (608)
                      ++|+.+|+++.   |+++.++.            .+|.+ +  ...+++++|+.+|+++++.  .++.+++++|.+|. .
T Consensus       234 ~~A~~~~~~aa---~g~~~a~~------------~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~  295 (452)
T 3e4b_A          234 KTAQALLEKIA---PGYPASWV------------SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E  295 (452)
T ss_dssp             HHHHHHHHHHG---GGSTHHHH------------HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHc---CCCHHHHH------------HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c
Confidence            99999999997   88888776            88988 4  5789999999999999965  48999999999998 6


Q ss_pred             C-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 040048          546 G-----QFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       546 g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P  597 (608)
                      |     ++++|+.+|+++.   +.++.++++||.+|..    ..++++|+.+|+++.+...
T Consensus       296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  353 (452)
T 3e4b_A          296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ  353 (452)
T ss_dssp             CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence            6     9999999999999   8999999999999987    4499999999999988643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.86  E-value=2.7e-21  Score=207.03  Aligned_cols=199  Identities=16%  Similarity=0.177  Sum_probs=178.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNF-AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA  339 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  339 (608)
                      +.++.+++.+|.++...|+| ++|+.+|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|+ ..++..+|
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg  177 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLS  177 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence            57899999999999999999 99999999999999999999999999999999999999999999999999 79999999


Q ss_pred             HHHHHc---------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048          340 NLYLRL---------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI  410 (608)
Q Consensus       340 ~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  410 (608)
                      .+|..+         |++++|+..|++++. ++|++                                            
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~--------------------------------------------  212 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MDVLD--------------------------------------------  212 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HCTTC--------------------------------------------
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHH-hCCCC--------------------------------------------
Confidence            999988         666666666655554 33332                                            


Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhC
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC--------GRFEDALAAIQKAAKQD  482 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~  482 (608)
                                                               ..+|..+|.+|...        |++++|+..|+++++++
T Consensus       213 -----------------------------------------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  251 (474)
T 4abn_A          213 -----------------------------------------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD  251 (474)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -----------------------------------------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence                                                     56677777777777        89999999999999999


Q ss_pred             C---CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          483 S---NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       483 p---~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      |   .+..++.            .+|.++...|++++|+.+|+++++++|++..++..++.++..+|++++|+..+.+.
T Consensus       252 p~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          252 RKASSNPDLHL------------NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             GGGGGCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCcccCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9   8888776            89999999999999999999999999999999999999999999999999877553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=5.6e-22  Score=198.77  Aligned_cols=251  Identities=18%  Similarity=0.116  Sum_probs=190.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI-----  327 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----  327 (608)
                      |..+.++..+|.+++..|++++|+.+|++++++        .|....++..+|.++...|++++|+.+|++++.+     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999995        6667788999999999999999999999999987     


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC
Q 040048          328 ---EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA  404 (608)
Q Consensus       328 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  404 (608)
                         .|....++..+|.+|...|++++|+..|++++. +.                                 .+..  .+
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~---------------------------------~~~~--~~  147 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-IR---------------------------------EKVL--GK  147 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HH---------------------------------HHHH--CT
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HH---------------------------------HHhc--CC
Confidence               355577899999999999999999999998764 10                                 0000  00


Q ss_pred             CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 040048          405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD--  482 (608)
Q Consensus       405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  482 (608)
                                                      ..|.          ...++..+|.++...|++++|+.+|++++...  
T Consensus       148 --------------------------------~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          148 --------------------------------DHPD----------VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             --------------------------------TCHH----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------CChH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                                            0011          26778889999999999999999999998871  


Q ss_pred             ---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC---------CC------HHHHHHHHHHHHH
Q 040048          483 ---SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP---------YN------SVLLCNRAACRSK  544 (608)
Q Consensus       483 ---p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p---------~~------~~~~~~la~~~~~  544 (608)
                         ++.+..         ...+..+|.++...|++++|+.+|++++...+         ..      ...+..++..+..
T Consensus       186 ~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          186 KLGPDDPNV---------AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             TSCTTCHHH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HhCCCCHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence               112221         12335899999999999999999999997532         22      2344455566667


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          545 LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      .+.+.+|+..+++++...|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            778888899999999999999999999999999999999999999999999885

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.86  E-value=3.5e-21  Score=201.72  Aligned_cols=255  Identities=16%  Similarity=0.177  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISI------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI------EPHYH  332 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~  332 (608)
                      .+++.+|.+++..|++++|+.+|++++.+      .|....++..+|.+|...|++++|+.+|++++.+      .+...
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  166 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG  166 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            58999999999999999999999999988      5667788999999999999999999999999998      45567


Q ss_pred             HHHHHHHHHHHHcCC-----------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHH
Q 040048          333 RAHHRLANLYLRLGE-----------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE  395 (608)
Q Consensus       333 ~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  395 (608)
                      .++..+|.+|...|+                 +++|+.+|++++. +.+........                       
T Consensus       167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~-~~~~~~~~~~~-----------------------  222 (411)
T 4a1s_A          167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK-LMRDLGDRGAQ-----------------------  222 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH-HHHHHTCHHHH-----------------------
T ss_pred             HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH-HHHHcCCHHHH-----------------------
Confidence            799999999999999                 8888888877755 22111111111                       


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI  475 (608)
Q Consensus       396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (608)
                                  ..++..+|.++...|++++|+.++++++.+.+......    ....++..+|.++...|++++|+.+|
T Consensus       223 ------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          223 ------------GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----AERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence                        34566677777777777777777777766554421111    12558899999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHcCCHH
Q 040048          476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY------NSVLLCNRAACRSKLGQFE  549 (608)
Q Consensus       476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~  549 (608)
                      ++++.+.+.......      ....+..+|.++...|++++|+.+|++++.+.+.      ...++..+|.+|..+|+++
T Consensus       287 ~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  360 (411)
T 4a1s_A          287 KRTLALAVELGEREV------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE  360 (411)
T ss_dssp             HHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence            999988765422211      1334568999999999999999999999987442      2568899999999999999


Q ss_pred             HHHHHHHHHHhcCCCC
Q 040048          550 KAIEDCNAALNVRPGY  565 (608)
Q Consensus       550 ~A~~~~~~al~~~p~~  565 (608)
                      +|+.+|++++++.+..
T Consensus       361 ~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          361 RALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999987653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.85  E-value=8.4e-21  Score=211.43  Aligned_cols=170  Identities=18%  Similarity=0.195  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048          408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE  487 (608)
Q Consensus       408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  487 (608)
                      ..++..+|.++..+|++++|+..|+++++++|++          ..++.++|.+|..+|++++|+..|+++++++|++..
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~   78 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD   78 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            5788899999999999999999999999999985          899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048          488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK  567 (608)
Q Consensus       488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  567 (608)
                      ++.            ++|.++..+|++++|+++|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++.
T Consensus        79 a~~------------nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~  146 (723)
T 4gyw_A           79 AYS------------NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD  146 (723)
T ss_dssp             HHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            876            99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      ++.++|.+|..+|++++|++.|++++++.|+.
T Consensus       147 a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          147 AYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            99999999999999999999999999987654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.85  E-value=9.5e-21  Score=210.99  Aligned_cols=99  Identities=29%  Similarity=0.435  Sum_probs=53.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.++++|+++|.++..+|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..+|+.+|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHhC
Q 040048          341 LYLRLGEVEKAIYHFKHAG  359 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al  359 (608)
                      +|..+|++++|++.|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl  104 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAI  104 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            5555555555554444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.85  E-value=9.2e-21  Score=191.38  Aligned_cols=256  Identities=15%  Similarity=0.148  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISI------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------  331 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------  331 (608)
                      +.++..+|.+++..|++++|+.+|++++.+      .|....++..+|.++...|++++|+..+++++++.+..      
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            468899999999999999999999999987      44457789999999999999999999999999876543      


Q ss_pred             HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048          332 HRAHHRLANLYLRLGE--------------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (608)
                      ..++..+|.+|...|+                    +++|+..+++++. +.+........                   
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~-~~~~~~~~~~~-------------------  182 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS-LVTALGDRAAQ-------------------  182 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH-HHHHHTCHHHH-------------------
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHhcCCHHHH-------------------
Confidence            4489999999999999                    8888888887754 21111111111                   


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHH
Q 040048          392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDA  471 (608)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  471 (608)
                                      ..++..+|.++...|++++|+.++++++...+......    ....++..+|.++...|++++|
T Consensus       183 ----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          183 ----------------GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             ----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHTCHHHH
T ss_pred             ----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHcCCHHHH
Confidence                            23555666666666777777666666665543321111    1256889999999999999999


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHc
Q 040048          472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKL  545 (608)
Q Consensus       472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~  545 (608)
                      +..+++++.+.+.......      ....+..+|.++...|++++|+.+|++++...+..      ..++..+|.++...
T Consensus       243 ~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  316 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  316 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchhH------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            9999999987665422211      13345689999999999999999999999874422      56888999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCC
Q 040048          546 GQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       546 g~~~~A~~~~~~al~~~p~~  565 (608)
                      |++++|+.+|++++++.+..
T Consensus       317 g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          317 GNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             TCHHHHHHHHHHHHHC----
T ss_pred             CChHHHHHHHHHHHHHHHhh
Confidence            99999999999999987653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.84  E-value=8.3e-19  Score=181.40  Aligned_cols=286  Identities=14%  Similarity=0.017  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA----  334 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~----  334 (608)
                      .+++..+|.+++..|++++|+.++++++...|...     .++..+|.++...|++++|+..+++++.+.+.....    
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            56778889999999999999999999998877553     257788888888999999999999988876543222    


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC--CChHHH
Q 040048          335 --HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA--DSAPQI  410 (608)
Q Consensus       335 --~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~  410 (608)
                        +..+|.++...|++++|+..|++++. +.+..                                   .++  .....+
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~-----------------------------------~~~~~~~~~~~  137 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQ-----------------------------------HLEQLPMHEFL  137 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHT-----------------------------------TCTTSTHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHh-----------------------------------ccccCcHHHHH
Confidence              56788888888888888888888765 22211                                   001  112345


Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN--NKEV  488 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~  488 (608)
                      +..+|.++...|++++|+.++++++...+......     ...++..+|.++...|++++|+.++++++.+.+.  ....
T Consensus       138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~  212 (373)
T 1hz4_A          138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-----QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD  212 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-----GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence            67788888888999999988888887665432211     2678889999999999999999999999987433  2212


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                      +..       .....++.++...|++++|..++++++...+..    ...+..+|.++...|++++|+..+++++...+.
T Consensus       213 ~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  285 (373)
T 1hz4_A          213 WIS-------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS  285 (373)
T ss_dssp             HHH-------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            210       011134566889999999999999999887643    346788999999999999999999999887432


Q ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          565 ------YSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       565 ------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                            ...++..+|.++...|++++|...|++++.+.+
T Consensus       286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence                  235788999999999999999999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.84  E-value=4.2e-20  Score=192.07  Aligned_cols=250  Identities=13%  Similarity=0.047  Sum_probs=191.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------H
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISI---DPN---KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------H  332 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~  332 (608)
                      .++.+|..++..|++++|+.+|++++.+   .++   .+.+++.+|.+|..+|++++|+.++++++++.+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            4556999999999999999999999987   233   45789999999999999999999999999974433       4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048          333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA  412 (608)
Q Consensus       333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  412 (608)
                      .++..+|.+|..+|++++|+.+|++++. +.+........                                   ..++.
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~-----------------------------------~~~~~  228 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYS-MAEAEKQPQLM-----------------------------------GRTLY  228 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHH-----------------------------------HHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHcCChHHH-----------------------------------HHHHH
Confidence            5899999999999999999999999976 43332111111                                   23556


Q ss_pred             HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048          413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM  492 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  492 (608)
                      .+|.+|...|++++|+.+|++++.+.+....    ......++..+|.++...|++++|+.++++++.+.+.......  
T Consensus       229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--  302 (383)
T 3ulq_A          229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNI----LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY--  302 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH--
Confidence            6677777777777777777776663111000    0013788999999999999999999999999987543221111  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048          493 RKAKGVAAARSNGNALFKQAK---FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP  563 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  563 (608)
                           ...+..+|.++...|+   +++|+.++++. ...+....++..+|.+|...|++++|+.+|++++++..
T Consensus       303 -----~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          303 -----LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             -----HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                 0113478999999999   88999999887 34445567889999999999999999999999998743

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=3e-20  Score=185.81  Aligned_cols=228  Identities=11%  Similarity=0.061  Sum_probs=167.9

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 040048          279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH------YHRAHHRLANLYLRLGEVEKAI  352 (608)
Q Consensus       279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~  352 (608)
                      ++++|+.+|+++              |.+|...|++++|+.+|++++++.+.      ...++..+|.+|..+|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            477777777776              55677778888888888888776422      1456777777777777777777


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048          353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK  432 (608)
Q Consensus       353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~  432 (608)
                      .+|++++. +.+                                                       ..|++..      
T Consensus        98 ~~~~~Al~-l~~-------------------------------------------------------~~g~~~~------  115 (292)
T 1qqe_A           98 DSLENAIQ-IFT-------------------------------------------------------HRGQFRR------  115 (292)
T ss_dssp             HHHHHHHH-HHH-------------------------------------------------------HTTCHHH------
T ss_pred             HHHHHHHH-HHH-------------------------------------------------------HcCCHHH------
Confidence            77777654 111                                                       1121111      


Q ss_pred             cCCCCCCcccccccCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 040048          433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ  511 (608)
Q Consensus       433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~  511 (608)
                                        .+.++..+|.+|... |++++|+.+|++++++.|.......      ....+..+|.++...
T Consensus       116 ------------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~lg~~~~~~  171 (292)
T 1qqe_A          116 ------------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL------SNKCFIKCADLKALD  171 (292)
T ss_dssp             ------------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHT
T ss_pred             ------------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH------HHHHHHHHHHHHHHh
Confidence                              156777899999996 9999999999999998875432110      123456899999999


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHH--
Q 040048          512 AKFSEAAAAYGDGLGLDPYNSV-------LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA-----RLRRADCFA--  577 (608)
Q Consensus       512 g~~~eA~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~la~~~~--  577 (608)
                      |++++|+.+|++++.+.|++..       ++.++|.++..+|++++|+.+|+++++++|++...     +..++..+.  
T Consensus       172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~  251 (292)
T 1qqe_A          172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG  251 (292)
T ss_dssp             TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence            9999999999999999887643       68899999999999999999999999999987653     445666664  


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          578 KIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ..+++++|+..|++++.++|.+..++..+
T Consensus       252 ~~~~~~~A~~~~~~~~~l~~~~~~~~~~~  280 (292)
T 1qqe_A          252 DSEQLSEHCKEFDNFMRLDKWKITILNKI  280 (292)
T ss_dssp             CTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence            46789999999999999999888776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.83  E-value=2.2e-19  Score=177.28  Aligned_cols=213  Identities=16%  Similarity=0.131  Sum_probs=176.9

Q ss_pred             CcchhHHHHhhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 040048          248 SAEPTSLCRALSTRMDPETLKIMGNEDYK----AGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVF  319 (608)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~  319 (608)
                      .++|...++....+.++.+++.+|.++..    .+++++|+.+|+++++.+  ++.+++.+|.+|..    .+++++|+.
T Consensus        22 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~   99 (273)
T 1ouv_A           22 FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQ   99 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence            34456677777678899999999999999    999999999999999985  78999999999999    999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHH
Q 040048          320 ECREAIRIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE  395 (608)
Q Consensus       320 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  395 (608)
                      +|+++++.+  ++.+++.+|.+|..    .+++++|+.+|++++. ..                                
T Consensus       100 ~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~--------------------------------  144 (273)
T 1ouv_A          100 YYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN--------------------------------  144 (273)
T ss_dssp             HHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT--------------------------------
T ss_pred             HHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC--------------------------------
Confidence            999999874  88999999999999    9999999999988764 11                                


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHH
Q 040048          396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDA  471 (608)
Q Consensus       396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  471 (608)
                                                                             +..++..+|.++..    .+++++|
T Consensus       145 -------------------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A  169 (273)
T 1ouv_A          145 -------------------------------------------------------DGDGCTILGSLYDAGRGTPKDLKKA  169 (273)
T ss_dssp             -------------------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             -------------------------------------------------------cHHHHHHHHHHHHcCCCCCCCHHHH
Confidence                                                                   14556667777777    7888888


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH---
Q 040048          472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK---  544 (608)
Q Consensus       472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---  544 (608)
                      +.+|+++++..  +..++            ..+|.++..    .+++++|+.+|+++++..+  +.+++.+|.+|..   
T Consensus       170 ~~~~~~a~~~~--~~~a~------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~  233 (273)
T 1ouv_A          170 LASYDKACDLK--DSPGC------------FNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG  233 (273)
T ss_dssp             HHHHHHHHHTT--CHHHH------------HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHCC--CHHHH------------HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence            88888888763  33443            378888888    8888888888888888755  7788888888888   


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCHHH
Q 040048          545 -LGQFEKAIEDCNAALNVRPGYSKA  568 (608)
Q Consensus       545 -~g~~~~A~~~~~~al~~~p~~~~a  568 (608)
                       .+++++|+.+|++++++.|+++..
T Consensus       234 ~~~~~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          234 VTRNEKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             SSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             cccCHHHHHHHHHHHHHcCCHHHHH
Confidence             888888888888888887765443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.83  E-value=5.6e-19  Score=175.81  Aligned_cols=236  Identities=14%  Similarity=0.040  Sum_probs=204.5

Q ss_pred             HHHHHcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HH
Q 040048          272 NEDYKAGNF-AEALALYDAAISIDPNKASYRSNKTAALIALG--RLLEAVFECREAIRIEPHYHRAHHRLANLY----LR  344 (608)
Q Consensus       272 ~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~----~~  344 (608)
                      ......|.+ ++|+.++.++|.++|++..+|+.++.++..+|  ++++++.++++++..+|++..+|+..+.++    ..
T Consensus        40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence            334455665 68999999999999999999999999999999  999999999999999999999999999988    55


Q ss_pred             c---CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          345 L---GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       345 ~---g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      .   +++++++..+.+++. .                                                           
T Consensus       120 l~~~~~~~~EL~~~~~~l~-~-----------------------------------------------------------  139 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLS-S-----------------------------------------------------------  139 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHH-H-----------------------------------------------------------
T ss_pred             ccccCCHHHHHHHHHHHHH-h-----------------------------------------------------------
Confidence            5   455555555555544 3                                                           


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE--DALAAIQKAAKQDSNNKEVNMVMRKAKGVA  499 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  499 (608)
                                      +|+          +..+|..++.++...|.++  ++++.+.++++.+|.+..+|.         
T Consensus       140 ----------------~pk----------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~---------  184 (306)
T 3dra_A          140 ----------------DPK----------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS---------  184 (306)
T ss_dssp             ----------------CTT----------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH---------
T ss_pred             ----------------CCC----------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH---------
Confidence                            333          2788888888888888888  999999999999999999987         


Q ss_pred             HHHHHHHHHHHcCC------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHH
Q 040048          500 AARSNGNALFKQAK------FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK-AIEDCNAALNVR---PGYSKAR  569 (608)
Q Consensus       500 ~~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~  569 (608)
                         .++.++...+.      ++++++++.+++..+|.+..+|+.++.++...|+..+ ...++.++++++   |.++.++
T Consensus       185 ---~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  261 (306)
T 3dra_A          185 ---HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL  261 (306)
T ss_dssp             ---HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred             ---HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence               78888888887      9999999999999999999999999999999998555 556777788776   8899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHH
Q 040048          570 LRRADCFAKIEKWEASMQDYEILKK-EAPDDEEVDQA  605 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~  605 (608)
                      ..+|.+|.+.|+.++|+++|+.+.+ ++|-....|..
T Consensus       262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~  298 (306)
T 3dra_A          262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence            9999999999999999999999997 89999888764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.83  E-value=2.2e-19  Score=186.36  Aligned_cols=307  Identities=12%  Similarity=-0.033  Sum_probs=229.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHH----HcCCHHHHH---------HHHHHHHhhCCC-C---
Q 040048          272 NEDYKAGNFAEALALYDAAISIDP---NKASYRSNKTAALI----ALGRLLEAV---------FECREAIRIEPH-Y---  331 (608)
Q Consensus       272 ~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~eA~---------~~~~~al~~~p~-~---  331 (608)
                      ..+...+++++|..+++++...-+   .+.......+....    ..+.+..+.         ..++++-..... +   
T Consensus        20 y~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l   99 (378)
T 3q15_A           20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLL   99 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHH
Confidence            344789999999999998765322   23333322222221    122222222         444443221111 1   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC-----
Q 040048          332 -HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD-----  405 (608)
Q Consensus       332 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----  405 (608)
                       ...++.+|..+...|++++|+..|++++. +.+...........+..+|.++...|+++.|+..+.++++..+.     
T Consensus       100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  178 (378)
T 3q15_A          100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEK-ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS  178 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence             22677899999999999999999999988 54433334566788999999999999999999999999986432     


Q ss_pred             -ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 040048          406 -SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK----  480 (608)
Q Consensus       406 -~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----  480 (608)
                       ....++..+|.++...|++++|+..|++++.+.+......    ....++..+|.+|...|++++|+.+|++++.    
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR----FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence             2356788999999999999999999999987643221111    1267899999999999999999999999999    


Q ss_pred             -hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----CCCHHHHHHHHHHHHHcCC---HHHH
Q 040048          481 -QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-----PYNSVLLCNRAACRSKLGQ---FEKA  551 (608)
Q Consensus       481 -~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A  551 (608)
                       .+|....            ++..+|.++...|++++|+.++++++++.     +.....+..++.++...|+   +.+|
T Consensus       255 ~~~~~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a  322 (378)
T 3q15_A          255 KVPDLLPK------------VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL  322 (378)
T ss_dssp             HCGGGHHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             hCChhHHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence             4444333            33599999999999999999999999874     3335567788889988998   8888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      +.++++. ...|....++..+|.+|...|++++|..+|++++++.
T Consensus       323 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          323 LSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            8888872 2334456788899999999999999999999999864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.83  E-value=8.8e-19  Score=160.85  Aligned_cols=174  Identities=14%  Similarity=0.165  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048          407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK  486 (608)
Q Consensus       407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  486 (608)
                      ....+..+|.++...|++++|+..+++++...|.+          ..++..+|.++...|++++|+..++++++..|.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   76 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD----------VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV   76 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            35678889999999999999999999999998874          88999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048          487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  566 (608)
                      .++.            .+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++...|+++
T Consensus        77 ~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  144 (186)
T 3as5_A           77 KVAT------------VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG  144 (186)
T ss_dssp             HHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHH------------HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence            8775            8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      .++..+|.++...|++++|+.+|+++++++|++...
T Consensus       145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence            999999999999999999999999999999987643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.83  E-value=2.4e-19  Score=175.84  Aligned_cols=212  Identities=14%  Similarity=0.087  Sum_probs=142.4

Q ss_pred             hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHH
Q 040048          292 SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA  368 (608)
Q Consensus       292 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~  368 (608)
                      ..+|.++..++.+|..++..|++++|+..|+++++.+|++   ..+++.+|.+|..+|++++|+..|++++. ..|++. 
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~-   86 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDP-   86 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCT-
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCc-
Confidence            3455555566666666666666666666666666665555   55666666666666666666666655554 333220 


Q ss_pred             HHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCC
Q 040048          369 KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGP  448 (608)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~  448 (608)
                                                           .                                          
T Consensus        87 -------------------------------------~------------------------------------------   87 (261)
T 3qky_A           87 -------------------------------------R------------------------------------------   87 (261)
T ss_dssp             -------------------------------------T------------------------------------------
T ss_pred             -------------------------------------h------------------------------------------
Confidence                                                 0                                          


Q ss_pred             CCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-----HHHHHHHHHHHHHHHcCCHH
Q 040048          449 IGNANLLVVRAQVNLA--------CGRFEDALAAIQKAAKQDSNNKEVNMVMRKA-----KGVAAARSNGNALFKQAKFS  515 (608)
Q Consensus       449 ~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-----~~~~~~~~lg~~~~~~g~~~  515 (608)
                        ...+++.+|.++..        .|++++|+..|++++...|++..+......+     .....++.+|.++...|+++
T Consensus        88 --~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  165 (261)
T 3qky_A           88 --VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE  165 (261)
T ss_dssp             --HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             --hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence              13444455555555        8899999999999999999987665433221     11233467888888888888


Q ss_pred             HHHHHHHHhhcCCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc
Q 040048          516 EAAAAYGDGLGLDPY---NSVLLCNRAACRSKL----------GQFEKAIEDCNAALNVRPGYS---KARLRRADCFAKI  579 (608)
Q Consensus       516 eA~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~  579 (608)
                      +|+..|+++++..|+   .+.+++.+|.+|..+          |++++|+..|+++++..|+++   .+...++.++..+
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~  245 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL  245 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence            888888888888887   456888888888876          888888888888888888874   5566777777777


Q ss_pred             CCHHHHH
Q 040048          580 EKWEASM  586 (608)
Q Consensus       580 g~~~~A~  586 (608)
                      ++++++.
T Consensus       246 ~~~~~~~  252 (261)
T 3qky_A          246 TELEGDA  252 (261)
T ss_dssp             HHHHTCT
T ss_pred             HHhhhhh
Confidence            7665543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.82  E-value=2.8e-19  Score=184.97  Aligned_cols=304  Identities=14%  Similarity=-0.029  Sum_probs=218.6

Q ss_pred             CCCcchhHHHHhhhC--C-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHcC
Q 040048          246 SSSAEPTSLCRALST--R-MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA------SYRSNKTAALIALG  312 (608)
Q Consensus       246 ~~~~~a~~~~~~~~~--~-~~~----~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~la~~~~~~g  312 (608)
                      +..+++...++..+.  + .++    .++..+|.++...|++++|+..|++++.+.|...      .++..+|.++...|
T Consensus        28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G  107 (373)
T 1hz4_A           28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG  107 (373)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence            444556666655432  2 333    2678899999999999999999999999866542      34788999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048          313 RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTL  392 (608)
Q Consensus       313 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A  392 (608)
                      ++++|+..+++++.+.+..              +..             ..|..      ...+..++.++...|++++|
T Consensus       108 ~~~~A~~~~~~al~~~~~~--------------~~~-------------~~~~~------~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A          108 FLQTAWETQEKAFQLINEQ--------------HLE-------------QLPMH------EFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHT--------------TCT-------------TSTHH------HHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh--------------ccc-------------cCcHH------HHHHHHHHHHHHHhcCHHHH
Confidence            9999999999998754211              000             00111      34556678888999999999


Q ss_pred             HHHHHHHHHcCCCC----hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCH
Q 040048          393 IQETRAAIAGGADS----APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF  468 (608)
Q Consensus       393 ~~~~~~al~~~~~~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~  468 (608)
                      +..+++++...+..    ....+..+|.++...|++++|...+++++.+.+.......   ........++.++...|++
T Consensus       155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~  231 (373)
T 1hz4_A          155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD---WISNANKVRVIYWQMTGDK  231 (373)
T ss_dssp             HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH---HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh---HHHHHHHHHHHHHHHCCCH
Confidence            99999999876542    3467888999999999999999999998765332100000   0011222455668899999


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHH
Q 040048          469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY------NSVLLCNRAACR  542 (608)
Q Consensus       469 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~  542 (608)
                      ++|..++++++...+.......        ..+..+|.++...|++++|+..+++++...+.      ...++..+|.++
T Consensus       232 ~~A~~~~~~a~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~  303 (373)
T 1hz4_A          232 AAAANWLRHTAKPEFANNHFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY  303 (373)
T ss_dssp             HHHHHHHHHSCCCCCTTCGGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcchhhH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence            9999999999887765321110        11247899999999999999999999876432      235788899999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      ...|++++|...|++++.+.+.     ......+...|  +.....++.++...|-+.
T Consensus       304 ~~~g~~~~A~~~l~~al~~~~~-----~g~~~~~~~~g--~~~~~ll~~~~~~~~~~~  354 (373)
T 1hz4_A          304 WQAGRKSDAQRVLLDALKLANR-----TGFISHFVIEG--EAMAQQLRQLIQLNTLPE  354 (373)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHH-----HCCCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred             HHhCCHHHHHHHHHHHHHHhcc-----ccHHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence            9999999999999999987532     11112233333  567778888888888533

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.82  E-value=1.4e-19  Score=202.26  Aligned_cols=185  Identities=12%  Similarity=-0.039  Sum_probs=141.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAI--------SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH  332 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~  332 (608)
                      |.++.+++..|   +..|++++|+..|++++        +.+|++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence            45666666666   67788888888888888        77888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048          333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA  412 (608)
Q Consensus       333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  412 (608)
                      .+|+.+|.+|..+|++++|+..|+++++ ++|++                                              
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~----------------------------------------------  500 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLD-TFPGE----------------------------------------------  500 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTC----------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC----------------------------------------------
Confidence            8888888888888888888888888776 55544                                              


Q ss_pred             HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048          413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM  492 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  492 (608)
                                                             ..++..+|.++...|++++ +..|+++++++|++..++.  
T Consensus       501 ---------------------------------------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~--  538 (681)
T 2pzi_A          501 ---------------------------------------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF--  538 (681)
T ss_dssp             ---------------------------------------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH--
T ss_pred             ---------------------------------------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH--
Confidence                                                   5666677777777777777 7788888888887777665  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048          493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ  547 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  547 (608)
                                ++|.++...|++++|+..|+++++++|++..+++++|.++...++
T Consensus       539 ----------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          539 ----------GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             ----------HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             ----------HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence                      777888888888888888888888888777888888877766555

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.82  E-value=6.4e-19  Score=172.83  Aligned_cols=215  Identities=15%  Similarity=0.053  Sum_probs=173.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HR  333 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~  333 (608)
                      .+.+++.++.+|..++..|+|++|+..|++++..+|++   +.+++.+|.+|..+|++++|+..|++++++.|++   ..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            56789999999999999999999999999999999999   8899999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048          334 AHHRLANLYLR--------LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD  405 (608)
Q Consensus       334 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  405 (608)
                      +++.+|.++..        .|++++|+..|++++. ..|++...                                    
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~------------------------------------  133 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID-RYPNHELV------------------------------------  133 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH-HCTTCTTH------------------------------------
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-HCcCchhH------------------------------------
Confidence            89999999999        8888888888888776 66655210                                    


Q ss_pred             ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN  485 (608)
Q Consensus       406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  485 (608)
                           ...+..+....+       .                    ....++.+|.+|...|++++|+..|+++++..|++
T Consensus       134 -----~~a~~~~~~~~~-------~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          134 -----DDATQKIRELRA-------K--------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             -----HHHHHHHHHHHH-------H--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             -----HHHHHHHHHHHH-------H--------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence                 000000000000       0                    14557789999999999999999999999999986


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 040048          486 KEVNMVMRKAKGVAAARSNGNALFKQ----------AKFSEAAAAYGDGLGLDPYNS---VLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       486 ~~~~~~l~~~~~~~~~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~  552 (608)
                      .....         ++..+|.++...          |++++|+..|+++++..|+++   .+...++.++..+++++++.
T Consensus       182 ~~~~~---------a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          182 PWADD---------ALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             TTHHH---------HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             chHHH---------HHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            53221         234889999877          999999999999999999984   56667788887777766543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=5.9e-20  Score=205.31  Aligned_cols=187  Identities=15%  Similarity=0.067  Sum_probs=154.2

Q ss_pred             cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCc
Q 040048          293 IDPNKASYRSNKTAALIALGRLLEAVFECREAI--------RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQ  364 (608)
Q Consensus       293 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p  364 (608)
                      ++|+++.+++..|   ...|++++|+..|++++        +.+|++..+++.+|.+|..+|++++|+..|+++++ .  
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~--  462 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-R--  462 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-c--
Confidence            4566666655555   55667777777777776        66666666777777777777777666666666654 2  


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccccc
Q 040048          365 VDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTR  444 (608)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  444 (608)
                                                                                               +|++   
T Consensus       463 -------------------------------------------------------------------------~p~~---  466 (681)
T 2pzi_A          463 -------------------------------------------------------------------------VGWR---  466 (681)
T ss_dssp             -------------------------------------------------------------------------HCCC---
T ss_pred             -------------------------------------------------------------------------Ccch---
Confidence                                                                                     3332   


Q ss_pred             ccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048          445 FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG  524 (608)
Q Consensus       445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  524 (608)
                             ..+++.+|.++...|++++|+..|+++++++|++..++.            .+|.++...|++++ +.+|+++
T Consensus       467 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~------------~lg~~~~~~g~~~~-~~~~~~a  526 (681)
T 2pzi_A          467 -------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKL------------ALAATAELAGNTDE-HKFYQTV  526 (681)
T ss_dssp             -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHH------------HHHHHHHHHTCCCT-TCHHHHH
T ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHcCChHH-HHHHHHH
Confidence                   788999999999999999999999999999999998886            89999999999999 9999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       525 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      ++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+++++|.++...++
T Consensus       527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999999999999999999988666

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.81  E-value=1e-18  Score=181.31  Aligned_cols=241  Identities=14%  Similarity=0.083  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDP------NKASYRSNKTAALIALGRLLEAVFECREAIRIEPH-------YH  332 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~  332 (608)
                      .++.+|..++..|++++|+.+|++++.+.+      ..+.+++.+|.+|..+|++++|+.++++++++.+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            577899999999999999999999998743      23568999999999999999999999999987543       24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048          333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA  412 (608)
Q Consensus       333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  412 (608)
                      .++..+|.+|..+|++++|+..|++++. +.+........                                   ..++.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~~~~~-----------------------------------~~~~~  226 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALE-LAMDIQNDRFI-----------------------------------AISLL  226 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHH-----------------------------------HHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcCCHHHH-----------------------------------HHHHH
Confidence            5788999999999999999999999876 32211111111                                   24566


Q ss_pred             HHHHHHHHcCChHHHHHHhhcCCC-----CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-
Q 040048          413 LQAEALLKLHKHQEADETLKNGPN-----FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK-  486 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l~~al~-----~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-  486 (608)
                      .+|.+|...|++++|+.+|++++.     .+|.          ...++..+|.++...|++++|+.++++++.+.+... 
T Consensus       227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  296 (378)
T 3q15_A          227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL----------LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH  296 (378)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            667777777777777777777766     3443          278899999999999999999999999999866522 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040048          487 -EVNMVMRKAKGVAAARSNGNALFKQAK---FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR  562 (608)
Q Consensus       487 -~~~~~l~~~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  562 (608)
                       ....         .+..++.++...++   +.+|+.++++. ...+....++..+|.+|...|++++|+.+|++++++.
T Consensus       297 ~~~~~---------~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          297 KFYKE---------LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             SCHHH---------HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHH---------HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             2211         12477888888888   88999998873 3334456788899999999999999999999998753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=1.3e-17  Score=188.95  Aligned_cols=273  Identities=13%  Similarity=0.058  Sum_probs=215.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..+.+|+.+|.++...|++++|+..|.++     +++..|..+|.++...|++++|+++|..+.+..++ +.+...+|.+
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence            56788888888888888888888888775     67788888888888888888888888888877644 2233358888


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |.+++++++ ++.|.....            ...+...|..+...|+|++|+..|.++         ..|..++.+|.++
T Consensus      1177 YAKl~rlee-le~fI~~~n------------~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A         1177 LAKTNRLAE-LEEFINGPN------------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 1234 (1630)
T ss_pred             HHhhcCHHH-HHHHHhCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHh
Confidence            888888774 444432211            234556888888888888888888885         3678888888888


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      |++++|++.++++..               ..+|...+.++...|+|..|..+... +..+|+..+              
T Consensus      1235 ge~q~AIEaarKA~n---------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLe-------------- 1284 (1630)
T 1xi4_A         1235 GEYQAAVDGARKANS---------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE-------------- 1284 (1630)
T ss_pred             CCHHHHHHHHHHhCC---------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHH--------------
Confidence            888888888888843               67888888888888888888887764 444443222              


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--LGQFEKAIEDCNAALNVRP-----GYSKARLRRAD  574 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~  574 (608)
                       .++..|...|.|++|+.++++++.+++.+...+..+|.+|.+  -++..++++.|...+.+.|     .....|..+..
T Consensus      1285 -eli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A         1285 -ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence             677899999999999999999999999999999888888876  5678899999999988877     67889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 040048          575 CFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       575 ~~~~~g~~~~A~~~~~~al  593 (608)
                      +|.+-|+|+.|+..+-...
T Consensus      1364 LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A         1364 LYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred             HHHhcccHHHHHHHHHhcc
Confidence            9999999999995554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.79  E-value=8.4e-18  Score=161.09  Aligned_cols=207  Identities=11%  Similarity=0.057  Sum_probs=141.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR---AHH  336 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~  336 (608)
                      .++.++.+|..++..|+|++|+..|++++...|+++   .+++.+|.+|..+|++++|+..|+++++.+|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            577899999999999999999999999999988864   67899999999999999999999999999998753   788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAE  416 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~  416 (608)
                      .+|.++..+|..     .+                                                             
T Consensus        83 ~~g~~~~~~~~~-----~~-------------------------------------------------------------   96 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL-------------------------------------------------------------   96 (225)
T ss_dssp             HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred             HHHHHHHhhhhh-----hh-------------------------------------------------------------
Confidence            888888765531     00                                                             


Q ss_pred             HHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040048          417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK  496 (608)
Q Consensus       417 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  496 (608)
                                                          ..+..++..+...|++++|+..|+++++..|++..++...    
T Consensus        97 ------------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~----  136 (225)
T 2yhc_A           97 ------------------------------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT----  136 (225)
T ss_dssp             -----------------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----
T ss_pred             ------------------------------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----
Confidence                                                0011123334445666666666666666666666554311    


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHH
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS---KARLRRA  573 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la  573 (608)
                           ..++.+...                    .......+|.+|...|++++|+..|+++++..|+++   .+++.+|
T Consensus       137 -----~~l~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~  191 (225)
T 2yhc_A          137 -----KRLVFLKDR--------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLME  191 (225)
T ss_dssp             -----HHHHHHHHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             -----HHHHHHHHH--------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHH
Confidence                 011111110                    011234567777777777777777777777777764   5677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          574 DCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      .+|.++|++++|++.|+++....|++.
T Consensus       192 ~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          192 NAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            777777777777777777777777653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.78  E-value=7.1e-17  Score=183.05  Aligned_cols=266  Identities=14%  Similarity=0.069  Sum_probs=212.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 040048          270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE  349 (608)
Q Consensus       270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  349 (608)
                      +|.++...|.|++|..+|+++-       .....+...+...+++++|+++++++     +.+.+|+.+|.++...|+++
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence            5999999999999999999972       11122334455889999999999876     56899999999999999999


Q ss_pred             HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHH
Q 040048          350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE  429 (608)
Q Consensus       350 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~  429 (608)
                      +|+..|.++-.            ...+...+..+.+.|+|++|++.|..+.+..++..  +...+|.+|.+++++++ ++
T Consensus      1123 EAIdsYiKAdD------------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--Idt~LafaYAKl~rlee-le 1187 (1630)
T 1xi4_A         1123 EAIDSYIKADD------------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAE-LE 1187 (1630)
T ss_pred             HHHHHHHhcCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--ccHHHHHHHHhhcCHHH-HH
Confidence            99999988733            56678899999999999999999999998875532  33358999999999886 44


Q ss_pred             HhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 040048          430 TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF  509 (608)
Q Consensus       430 ~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~  509 (608)
                      .|..    .+           +...+..+|..+...|+|++|+.+|.++        ..|            ..+|.++.
T Consensus      1188 ~fI~----~~-----------n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny------------~rLA~tLv 1232 (1630)
T 1xi4_A         1188 EFIN----GP-----------NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNF------------GRLASTLV 1232 (1630)
T ss_pred             HHHh----CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHH------------HHHHHHHH
Confidence            4432    12           2556778999999999999999999986        133            38899999


Q ss_pred             HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY  589 (608)
Q Consensus       510 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~  589 (608)
                      +.|++++|+++++++     .+..+|...+.++...|+|..|..+... +..+   ++.+..++..|...|.|++|+.++
T Consensus      1233 kLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A         1233 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred             HhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999998     4568888888888888888888887774 4433   455568888888888888888888


Q ss_pred             HHHHHhCCCCHHHHHHh
Q 040048          590 EILKKEAPDDEEVDQAL  606 (608)
Q Consensus       590 ~~al~l~P~~~~~~~~L  606 (608)
                      ++++.++|.+...+..|
T Consensus      1304 E~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A         1304 EAALGLERAHMGMFTEL 1320 (1630)
T ss_pred             HHHhccChhHhHHHHHH
Confidence            88888888887776544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=4e-19  Score=158.83  Aligned_cols=146  Identities=10%  Similarity=-0.002  Sum_probs=93.4

Q ss_pred             HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048          414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR  493 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  493 (608)
                      +|.++...|++++|+..+++++...|+.          +..++.+|.+|+..|++++|+..|+++++++|++..++.   
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~---   69 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQK----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR---   69 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHH----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---
Confidence            4555555666666666666666665553          555666666666666666666666666666666666654   


Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHHHHHH
Q 040048          494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED-CNAALNVRPGYSKARLRR  572 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~l  572 (608)
                               .+|.++...|++++|+.+|+++++++|+++.+++.+|.+|...|++++|... ++++++++|+++.++..+
T Consensus        70 ---------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A           70 ---------FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             ---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             ---------HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence                     6666666666666666666666666666666666666666666666655544 366666666666666666


Q ss_pred             HHHHHHcCC
Q 040048          573 ADCFAKIEK  581 (608)
Q Consensus       573 a~~~~~~g~  581 (608)
                      +.++...|+
T Consensus       141 ~~ll~~~G~  149 (150)
T 4ga2_A          141 EQLLDCEGE  149 (150)
T ss_dssp             HHHHHTCCC
T ss_pred             HHHHHHhCc
Confidence            666666554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.78  E-value=3.9e-18  Score=161.35  Aligned_cols=169  Identities=11%  Similarity=0.036  Sum_probs=150.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSN----------------KTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      .++.++..|..++..|++++|+.+|++++..+|+++.+++.                +|.+|..+|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--HHHHHHHHHHHHHcCC
Q 040048          327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--WNTLIQETRAAIAGGA  404 (608)
Q Consensus       327 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~~  404 (608)
                      ++|+++.+++.+|.+|...|++++|+..|++++. ++|++      ..+++.+|.++...+.  ...+...+.+++.  +
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~  153 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS--P  153 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C--C
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--C
Confidence            9999999999999999999999999999999999 99998      6788888888876654  4566777777654  3


Q ss_pred             CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048          405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD  440 (608)
Q Consensus       405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  440 (608)
                      ......++.+|.++...|++++|+..|+++++++|+
T Consensus       154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            333456788899999999999999999999999997

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=2.3e-19  Score=160.43  Aligned_cols=137  Identities=11%  Similarity=0.052  Sum_probs=125.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN  537 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  537 (608)
                      ||.++...|++++|+..+++++..+|+++..+.            .+|.+|+..|++++|+.+|+++++++|+++.+|+.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~------------~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~   70 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGF------------YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRF   70 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            788888999999999999999998888777665            89999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHh
Q 040048          538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD-YEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       538 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~-~~~al~l~P~~~~~~~~L  606 (608)
                      +|.+|...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|.+. ++++++++|+++.++..+
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999887766 599999999999987643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.78  E-value=7.7e-19  Score=172.90  Aligned_cols=234  Identities=17%  Similarity=0.118  Sum_probs=175.3

Q ss_pred             HcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHH
Q 040048          276 KAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIE--------PHYHRAHHRLA  339 (608)
Q Consensus       276 ~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la  339 (608)
                      ..|++++|+.+|++++++        +|..+.++..+|.++...|++++|+.+|++++.+.        |....++..+|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            457777888888887774        35567889999999999999999999999999873        55577899999


Q ss_pred             HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048          340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL  419 (608)
Q Consensus       340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~  419 (608)
                      .+|...|++++|+..|++++. +.                                 ++..  +++              
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~-~~---------------------------------~~~~--~~~--------------  122 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALE-IR---------------------------------EKVL--GKF--------------  122 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHH-HH---------------------------------HHHH--CTT--------------
T ss_pred             HHHHHhccHHHHHHHHHHHHH-HH---------------------------------HHHc--CCC--------------
Confidence            999999999999999998865 10                                 0000  000              


Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRK  494 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~  494 (608)
                                        .|.          ...++..+|.++...|++++|+.+|++++.+     .++.+..      
T Consensus       123 ------------------~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------  168 (283)
T 3edt_B          123 ------------------HPD----------VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV------  168 (283)
T ss_dssp             ------------------CHH----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH------
T ss_pred             ------------------ChH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH------
Confidence                              011          2678888999999999999999999999987     1222222      


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHH
Q 040048          495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL---------DPYNSVLLCNRAACRSKLGQ------FEKAIEDCNAAL  559 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al  559 (608)
                         ...+..+|.++...|++++|+.+|++++..         .+.....+..++..+...+.      +.++...++...
T Consensus       169 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (283)
T 3edt_B          169 ---AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK  245 (283)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence               123358999999999999999999999976         45556677777777766554      344444444444


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      ...|....++..+|.+|..+|++++|+.+|++++++.
T Consensus       246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            4456667899999999999999999999999999764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.78  E-value=2e-18  Score=163.27  Aligned_cols=167  Identities=12%  Similarity=0.053  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV----------------RAQVNLACGRFEDALAA  474 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~  474 (608)
                      +...|..+...|++++|+..|++++..+|++          +.+++.                +|.++...|++++|+..
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3444555555555555555555555555543          444444                99999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC--HHHHH
Q 040048          475 IQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ--FEKAI  552 (608)
Q Consensus       475 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~  552 (608)
                      |+++++++|++..++.            .+|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+  ...+.
T Consensus        77 ~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  144 (208)
T 3urz_A           77 YKELLQKAPNNVDCLE------------ACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE  144 (208)
T ss_dssp             HHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999999999998876            899999999999999999999999999999999999999987764  45678


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      ..|++++...|. ..+++.+|.++..+|++++|+.+|+++++++|++.
T Consensus       145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            888887654332 34788999999999999999999999999999754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.78  E-value=2.5e-18  Score=171.82  Aligned_cols=219  Identities=13%  Similarity=0.023  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------HR  333 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~  333 (608)
                      .+...|.++...|+|++|+.+|++++.+.+.      .+.++.++|.+|..+|++++|+.+|++++++.+..      ..
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4666688999999999999999999998532      25689999999999999999999999999987654      56


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH----
Q 040048          334 AHHRLANLYLRL-GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP----  408 (608)
Q Consensus       334 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----  408 (608)
                      ++..+|.+|... |++++|+.+|++++. +.|...........+..++.++...|++++|+..|++++...|+...    
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGE-WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            899999999996 999999999999998 76654333344677889999999999999999999999999876532    


Q ss_pred             --HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCC
Q 040048          409 --QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL--ACGRFEDALAAIQKAAKQDSN  484 (608)
Q Consensus       409 --~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~  484 (608)
                        ..+..+|.++..+|++++|+..|++++.++|+.....     ....+..++..+.  ..+++++|+..|++++.++|.
T Consensus       198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-----ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence              3678899999999999999999999999999753321     1345555666664  567899999999999888887


Q ss_pred             ChHHHH
Q 040048          485 NKEVNM  490 (608)
Q Consensus       485 ~~~~~~  490 (608)
                      ...++.
T Consensus       273 ~~~~~~  278 (292)
T 1qqe_A          273 KITILN  278 (292)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.77  E-value=1e-16  Score=160.29  Aligned_cols=235  Identities=14%  Similarity=0.094  Sum_probs=195.6

Q ss_pred             HHHcCCHH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          274 DYKAGNFA-EALALYDAAISIDPNKASYRSNKTAALIALGR----------LLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       274 ~~~~g~~~-~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      ....|++. +|+.++.++|.++|++..+|+.++.++..++.          +++++.+++.++..+|.+..+|...+.++
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34667776 79999999999999999999999999988776          68999999999999999999999999999


Q ss_pred             HHcCC--HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          343 LRLGE--VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       343 ~~~g~--~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      ..+|.  +++++.++.+++. .+|.+                                                      
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~-~dprN------------------------------------------------------  143 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLE-ADERN------------------------------------------------------  143 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHH-HCTTC------------------------------------------------------
T ss_pred             hccCcccHHHHHHHHHHHHH-hCCCC------------------------------------------------------
Confidence            98884  7777777777665 44443                                                      


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR-FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA  499 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  499 (608)
                                                     ..+|...+.+....|. ++++++++.+++..+|.+..+|.         
T Consensus       144 -------------------------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~---------  183 (331)
T 3dss_A          144 -------------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH---------  183 (331)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH---------
T ss_pred             -------------------------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH---------
Confidence                                           6777778888888887 68999999999999999999887         


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHH
Q 040048          500 AARSNGNALFKQ--------------AKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL-----------GQFEKAIED  554 (608)
Q Consensus       500 ~~~~lg~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~  554 (608)
                         .++.++...              +.++++++++.+++..+|++..+|+.+..++...           +.+++++++
T Consensus       184 ---~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~  260 (331)
T 3dss_A          184 ---YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES  260 (331)
T ss_dssp             ---HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence               666666665              5689999999999999999999998776666555           468999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          555 CNAALNVRPGYSKARLRRADCFA---KIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       555 ~~~al~~~p~~~~a~~~la~~~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      +++++++.|++...+..++.+..   ..|..++...++.+++++||-...-+.-|
T Consensus       261 ~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~  315 (331)
T 3dss_A          261 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  315 (331)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence            99999999999666655554433   35788999999999999999888776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.77  E-value=3.5e-18  Score=147.75  Aligned_cols=108  Identities=29%  Similarity=0.659  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      .+..+|..+++.|+|++|+.+|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          580 EKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      |++++|+++|+++++++|++.+++..|.
T Consensus        95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           95 REWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            9999999999999999999999998875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=1.4e-19  Score=185.73  Aligned_cols=273  Identities=12%  Similarity=0.034  Sum_probs=150.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .++++|..+|..+...|++++|++.|.++     .++..+...+.++...|++++|+.+++.+++..++ +.+...++.+
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~  103 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA  103 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence            44679999999999999999999999774     46678999999999999999999999999885444 7788899999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |.++|+++++.+.++.      |+       ...+...|..+...|.|++|...|.++         ..|..+|.++..+
T Consensus       104 Y~Klg~l~e~e~f~~~------pn-------~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L  161 (449)
T 1b89_A          104 LAKTNRLAELEEFING------PN-------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL  161 (449)
T ss_dssp             -----CHHHHTTTTTC------C-----------------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHcC------Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence            9999999998866632      32       238899999999999999999999976         3688999999999


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      |++++|++.++++.               ++.+|.....++...|+++.|..+... +...|++   ..           
T Consensus       162 g~yq~AVea~~KA~---------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~-----------  211 (449)
T 1b89_A          162 GEYQAAVDGARKAN---------------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LE-----------  211 (449)
T ss_dssp             TCHHHHHHHHHHHT---------------CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HH-----------
T ss_pred             ccHHHHHHHHHHcC---------------CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HH-----------
Confidence            99999999999993               288999999999999999999777765 2244433   22           


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--LGQFEKAIEDCNAALNVRP-----GYSKARLRRAD  574 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~  574 (608)
                       .+...|.+.|++++|+.++++++.+++.+..++..+|.+|.+  .++..++++.|...+.+.|     .....|..+..
T Consensus       212 -~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~  290 (449)
T 1b89_A          212 -ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF  290 (449)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred             -HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence             567899999999999999999999999999999999999876  5678888888888888877     77889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 040048          575 CFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       575 ~~~~~g~~~~A~~~~~~al  593 (608)
                      +|...++|+.|+..+-...
T Consensus       291 ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          291 LYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             HHHHTTCHHHHHHHHHHST
T ss_pred             HHHhhchHHHHHHHHHhCC
Confidence            9999999999998665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.76  E-value=1.7e-17  Score=152.18  Aligned_cols=102  Identities=22%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ..++..+|.++...|++++|+..+++++...|.+..++.            .+|.++...|++++|+.+|++++...|.+
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF------------RLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHH------------HHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            444555566666666666666666666666666555543            56666666677777777777776666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      +.++..+|.++...|++++|+.+|++++++.|++
T Consensus       144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            6677777777777777777777777776666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.75  E-value=1.6e-16  Score=158.10  Aligned_cols=228  Identities=7%  Similarity=-0.093  Sum_probs=195.1

Q ss_pred             chhHHHHhh--hCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHH----HHc---CCHHHHH
Q 040048          250 EPTSLCRAL--STRMDPETLKIMGNEDYKAG--NFAEALALYDAAISIDPNKASYRSNKTAAL----IAL---GRLLEAV  318 (608)
Q Consensus       250 ~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~eA~  318 (608)
                      ++..+...+  .+|.+..+|+..|.++...|  ++++++.+++.++..+|++..+|+.++.++    ...   +++++++
T Consensus        51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL  130 (306)
T 3dra_A           51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF  130 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence            344444444  45889999999999999999  999999999999999999999999999999    777   8999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHH
Q 040048          319 FECREAIRIEPHYHRAHHRLANLYLRLGEVE--KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQET  396 (608)
Q Consensus       319 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  396 (608)
                      .++.++++.+|.+..+|...+.++..+|.++  ++++.+.+++. .+|.+                              
T Consensus       131 ~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d~~N------------------------------  179 (306)
T 3dra_A          131 DILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-TDLKN------------------------------  179 (306)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HCTTC------------------------------
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-hCCCC------------------------------
Confidence            9999999999999999999999999999887  88888877766 55544                              


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC------HHH
Q 040048          397 RAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR------FED  470 (608)
Q Consensus       397 ~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~  470 (608)
                                                                             ..+|..++.++...++      +++
T Consensus       180 -------------------------------------------------------~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          180 -------------------------------------------------------NSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             -------------------------------------------------------HHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             -------------------------------------------------------HHHHHHHHHHHHhccccchhhhHHH
Confidence                                                                   4555555666555555      899


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC---CCCHHHHHHHHHHHHHcC
Q 040048          471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE-AAAAYGDGLGLD---PYNSVLLCNRAACRSKLG  546 (608)
Q Consensus       471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g  546 (608)
                      +++++.+++..+|.+..+|.            .++.++...|+..+ ...++.+++.++   +.++.++..+|.++.+.|
T Consensus       205 El~~~~~aI~~~p~n~SaW~------------y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          205 ELNYVKDKIVKCPQNPSTWN------------YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             HHHHHHHHHHHCSSCHHHHH------------HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCccHHH------------HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            99999999999999999997            77888888888555 556888888776   888999999999999999


Q ss_pred             CHHHHHHHHHHHHh-cCCCCHHHHHHHHHH
Q 040048          547 QFEKAIEDCNAALN-VRPGYSKARLRRADC  575 (608)
Q Consensus       547 ~~~~A~~~~~~al~-~~p~~~~a~~~la~~  575 (608)
                      +.++|+++|+.+.+ .+|-....|..++..
T Consensus       273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          273 KYNESRTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence            99999999999997 799999888877654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.74  E-value=3.3e-17  Score=161.12  Aligned_cols=211  Identities=22%  Similarity=0.215  Sum_probs=159.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI------  327 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------  327 (608)
                      ..+.++..+|.+++..|++++|+.+|++++.+        +|....++..+|.++...|++++|+.+|++++.+      
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            45778999999999999999999999999987        3556778999999999999999999999999988      


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048          328 --EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD  405 (608)
Q Consensus       328 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  405 (608)
                        +|....++..+|.+|...|++++|+.+|++++. +                                 +...  ..++
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~---------------------------------~~~~--~~~~  164 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-I---------------------------------YATR--LGPD  164 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-H---------------------------------HHHH--SCTT
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H---------------------------------HHHh--cCCC
Confidence              466678999999999999999999999998865 1                                 0000  0000


Q ss_pred             ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 040048          406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ----  481 (608)
Q Consensus       406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  481 (608)
                                                      .|.          ...++..+|.++...|++++|+.+|++++.+    
T Consensus       165 --------------------------------~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          165 --------------------------------DPN----------VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             --------------------------------CHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------CHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence                                            111          2667788888889999999999999988876    


Q ss_pred             -----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          482 -----DSNNKEVNMVMRKAKGVAAARSNGNALFKQA------KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK  550 (608)
Q Consensus       482 -----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g------~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  550 (608)
                           .+.....+.            .++..+...+      .+.++...++......|....++..+|.+|..+|++++
T Consensus       203 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  270 (283)
T 3edt_B          203 EFGSVNGDNKPIWM------------HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA  270 (283)
T ss_dssp             HSSSCCSSCCCHHH------------HHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCCcchhHHHHHH------------HHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence                 333333433            4444444433      35566666666666667778899999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 040048          551 AIEDCNAALNVR  562 (608)
Q Consensus       551 A~~~~~~al~~~  562 (608)
                      |+.+|++++++.
T Consensus       271 A~~~~~~al~~~  282 (283)
T 3edt_B          271 AHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999999763

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.73  E-value=7e-17  Score=139.49  Aligned_cols=113  Identities=22%  Similarity=0.272  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..+..+|..++..|+|++|+..|+++++++|.+..++.            .+|.++..+|++++|+..|+++++++|++
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYS------------NRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            889999999999999999999999999999999998886            89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      +.+|+.+|.++..+|++++|+.+|+++++++|++..++..++.++
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998874

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.72  E-value=8.3e-16  Score=154.34  Aligned_cols=242  Identities=11%  Similarity=-0.013  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      +++..+..+....+..++|+.++.++|.++|++..+|..++.++..+| .+++++.++++++..+|++..+|...+.++.
T Consensus        55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~  134 (349)
T 3q7a_A           55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            445555555556666789999999999999999999999999999999 5999999999999999999999999999999


Q ss_pred             Hc-C-CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          344 RL-G-EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       344 ~~-g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      .+ + ++++++.++.+++. .+|.+                                                       
T Consensus       135 ~l~~~~~~~EL~~~~k~L~-~dpkN-------------------------------------------------------  158 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLL-PDPKN-------------------------------------------------------  158 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTS-SCTTC-------------------------------------------------------
T ss_pred             HhcCCChHHHHHHHHHHHH-hCCCC-------------------------------------------------------
Confidence            98 7 88899999998888 77766                                                       


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHhCCCChHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF--------EDALAAIQKAAKQDSNNKEVNMVMR  493 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~p~~~~~~~~l~  493 (608)
                                                    ..+|..++.++...|.+        .++++.+.++++.+|.+..+|.   
T Consensus       159 ------------------------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~---  205 (349)
T 3q7a_A          159 ------------------------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG---  205 (349)
T ss_dssp             ------------------------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred             ------------------------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH---
Confidence                                          33333333333333333        4999999999999999999997   


Q ss_pred             HHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH------------------
Q 040048          494 KAKGVAAARSNGNALFKQAK-------FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF------------------  548 (608)
Q Consensus       494 ~~~~~~~~~~lg~~~~~~g~-------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------------------  548 (608)
                               .++.++...++       ++++++++.+++..+|.+..+|+.+..++...|+-                  
T Consensus       206 ---------~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~  276 (349)
T 3q7a_A          206 ---------WRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP  276 (349)
T ss_dssp             ---------HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred             ---------HHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence                     88889888887       79999999999999999999999999999888764                  


Q ss_pred             --HHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHH
Q 040048          549 --EKAIEDCNAALNVR------PGYSKARLRRADCFAKIEKWEASMQDYEILK-KEAPDDEEVDQ  604 (608)
Q Consensus       549 --~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al-~l~P~~~~~~~  604 (608)
                        .+-...+...+...      +..+.++..++.+|...|+.++|.++|+.+. +.||-....|.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~  341 (349)
T 3q7a_A          277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE  341 (349)
T ss_dssp             ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence              22333333333222      4678899999999999999999999999987 67887776664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=5.2e-18  Score=169.71  Aligned_cols=219  Identities=21%  Similarity=0.189  Sum_probs=159.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIE----  328 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----  328 (608)
                      +..+.++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++++.    
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  145 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence            345778999999999999999999999999987        35567789999999999999999999999999874    


Q ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC
Q 040048          329 ----PHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA  404 (608)
Q Consensus       329 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  404 (608)
                          |....++..+|.++...|++++|+.+|++++. +.                                         
T Consensus       146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-----------------------------------------  183 (311)
T 3nf1_A          146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE-IY-----------------------------------------  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HH-----------------------------------------
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HH-----------------------------------------
Confidence                45567899999999999999999999998765 10                                         


Q ss_pred             CChHHHHHHHHHHHHHcCChHHHHHHhhcCCC-CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          405 DSAPQIYALQAEALLKLHKHQEADETLKNGPN-FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                                                 .+... ..|.          ...++..+|.++...|++++|+.+|++++...+
T Consensus       184 ---------------------------~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          184 ---------------------------QTKLGPDDPN----------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             ---------------------------HHTSCTTCHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------HHHhCCCCHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                                       00000 0011          156677778888888888888888888776532


Q ss_pred             C---------ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          484 N---------NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED  554 (608)
Q Consensus       484 ~---------~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  554 (608)
                      .         ....+.      ....+...+..+...+.+.+|+..+.+++...|..+.++..+|.+|...|++++|+.+
T Consensus       227 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  300 (311)
T 3nf1_A          227 EREFGSVDDENKPIWM------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL  300 (311)
T ss_dssp             HHHHC------CCHHH------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HhcCCCCCcchHHHHH------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            2         222221      1223345667777788888899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 040048          555 CNAALNVRPG  564 (608)
Q Consensus       555 ~~~al~~~p~  564 (608)
                      |++++++.|+
T Consensus       301 ~~~al~l~~~  310 (311)
T 3nf1_A          301 EEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhc
Confidence            9999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.72  E-value=9.2e-18  Score=149.65  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK  550 (608)
Q Consensus       471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  550 (608)
                      +-..+++++.++|++...+.            .+|.++...|++++|+.+|++++.++|.++.+|+++|.++..+|++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~------------~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~   88 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIY------------SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ   88 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCHHHHhCCCHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHH
Confidence            44556677888888888775            899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       551 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      |+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus        89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999999999876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.72  E-value=6.8e-17  Score=162.57  Aligned_cols=256  Identities=16%  Similarity=0.083  Sum_probs=184.7

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHF  355 (608)
Q Consensus       276 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  355 (608)
                      ..|++++|..+++++.+..+...         +...+++++|+.+|.++              |.+|...|++++|+..|
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence            35788899999999988766421         11158899999888876              56788899999999999


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048          356 KHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP  435 (608)
Q Consensus       356 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al  435 (608)
                      .+++. +.+..                    ++...+               ..++..+|.+|...|++++|+.+|++++
T Consensus        60 ~~al~-~~~~~--------------------~~~~~~---------------a~~~~~lg~~~~~~g~~~~A~~~~~~Al  103 (307)
T 2ifu_A           60 LQEAE-AHANN--------------------RSLFHA---------------AKAFEQAGMMLKDLQRMPEAVQYIEKAS  103 (307)
T ss_dssp             HHHHH-HHHHT--------------------TCHHHH---------------HHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred             HHHHH-HHHHc--------------------CCHHHH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            98866 32221                    222222               2455666777777777777777777776


Q ss_pred             CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048          436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS  515 (608)
Q Consensus       436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~  515 (608)
                      .+.+......    ....++..+|.+|.. |++++|+.+|++++.+.+......      .....+..+|.++...|+++
T Consensus       104 ~l~~~~g~~~----~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~~g~~~  172 (307)
T 2ifu_A          104 VMYVENGTPD----TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVRQQKFD  172 (307)
T ss_dssp             HHHHTTTCHH----HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHH----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHcCCHH
Confidence            6533211100    127889999999999 999999999999999877654432      24677889999999999999


Q ss_pred             HHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHH
Q 040048          516 EAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK-----ARLRRADCFAKIEKWEA  584 (608)
Q Consensus       516 eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~la~~~~~~g~~~~  584 (608)
                      +|+.+|++++.+.+.+      ..++..+|.++..+|++++|+.+|++++ ++|+...     .+..++..+ ..|+.+.
T Consensus       173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~  250 (307)
T 2ifu_A          173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ  250 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence            9999999999975533      3478889999999999999999999999 9999853     344555555 5677655


Q ss_pred             HHHH--HHHHHHhCCCCHHHH
Q 040048          585 SMQD--YEILKKEAPDDEEVD  603 (608)
Q Consensus       585 A~~~--~~~al~l~P~~~~~~  603 (608)
                      +...  |..+..++|....+.
T Consensus       251 ~~~~~~~~~~~~ld~~~~~~~  271 (307)
T 2ifu_A          251 LLRVCRSPLVTYMDNDYAKLA  271 (307)
T ss_dssp             HHHHTTSHHHHTSCHHHHHHH
T ss_pred             HHHHHhCchhhhhhHHHHHHH
Confidence            5442  344555555444433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=1.4e-17  Score=170.95  Aligned_cols=277  Identities=12%  Similarity=0.072  Sum_probs=172.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      ..|+..+..++..+...|+|++|+.+++.+++..++ +.+...++.+|.++|++.++.++++     .|+ ..+|..+|.
T Consensus        58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd  130 (449)
T 1b89_A           58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGD  130 (449)
T ss_dssp             ----------------------------------------------------CHHHHTTTTT-----CC-----------
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHH
Confidence            357779999999999999999999999999986444 7788899999999999999988885     244 459999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK  420 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~  420 (608)
                      .+...|+|++|..+|.++               ..+..++.++.++|++++|++.+.++.      .+..|...+.++..
T Consensus       131 ~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          131 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD  189 (449)
T ss_dssp             ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHH
Confidence            999999999999999986               247889999999999999999999992      36889999999999


Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      .|+++.|..+..... ..|+             -...+..+|...|++++|+.+++.++.+++.+...+.          
T Consensus       190 ~~ef~lA~~~~l~L~-~~ad-------------~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft----------  245 (449)
T 1b89_A          190 GKEFRLAQMCGLHIV-VHAD-------------ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT----------  245 (449)
T ss_dssp             TTCHHHHHHTTTTTT-TCHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH----------
T ss_pred             cCcHHHHHHHHHHHH-hCHh-------------hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH----------
Confidence            999999988887643 5443             3446888999999999999999999999999988887          


Q ss_pred             HHHHHHHH--HHcCCHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------
Q 040048          501 ARSNGNAL--FKQAKFSEAAAAYGDGLGLDP-----YNSVLLCNRAACRSKLGQFEKAIEDCNAALNV------------  561 (608)
Q Consensus       501 ~~~lg~~~--~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------  561 (608)
                        .+|.+|  ++.++..+.++.|...+.+.|     .++..|..+..+|...++|+.|+...-.....            
T Consensus       246 --el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~  323 (449)
T 1b89_A          246 --ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT  323 (449)
T ss_dssp             --HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHH
T ss_pred             --HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHh
Confidence              455554  566888999999999988888     78889999999999999999998766554332            


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          562 RPGYSKARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       562 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                      .+.+.+.++.....|.  +....++..+..++
T Consensus       324 kv~n~elyYkai~fyl--~~~p~~l~~ll~~l  353 (449)
T 1b89_A          324 KVANVELYYRAIQFYL--EFKPLLLNDLLMVL  353 (449)
T ss_dssp             HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence            4667788888777777  44455566666666

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.71  E-value=7.7e-17  Score=147.94  Aligned_cols=163  Identities=18%  Similarity=0.141  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV  488 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  488 (608)
                      ..+..+|..+...|++++|+..|+++++.+|++          ..++..+|.++...|++++|+..|++++...| ++..
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~   75 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY   75 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence            346778999999999999999999999999985          89999999999999999999999999999999 7655


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 040048          489 NMVMRKAKGVAAARSNGNAL-FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY--  565 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  565 (608)
                      ..            .++.+. ...+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  
T Consensus        76 ~~------------~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A           76 KS------------LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HH------------HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             HH------------HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence            43            223222 233344568999999999999999999999999999999999999999999999986  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          566 SKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       566 ~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      ..++..+|.++..+|+.++|+..|++++.
T Consensus       144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          144 GEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            66999999999999999999999999875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.70  E-value=4.7e-16  Score=151.23  Aligned_cols=219  Identities=11%  Similarity=0.031  Sum_probs=188.3

Q ss_pred             HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH-------HHHHHHcCChHHHHHHhhcCCCCCCcccccc
Q 040048          373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ-------AEALLKLHKHQEADETLKNGPNFDVDETTRF  445 (608)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l-------a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~  445 (608)
                      +..++..+..+ ..+++..|...|.+++..+|+. .+.|..+       +.++..++++.+++..+.+.+.+.|......
T Consensus         7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~   84 (282)
T 4f3v_A            7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR   84 (282)
T ss_dssp             HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred             HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence            44455555555 5799999999999999999998 5777777       8999999999999999999999999876665


Q ss_pred             cCCC-----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048          446 FGPI-----------GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF  514 (608)
Q Consensus       446 ~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~  514 (608)
                      +...           .-..+...++.++...|+|++|.+.|..++...|++. ...            .+|.++++.++|
T Consensus        85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~------------~~a~l~~~~~r~  151 (282)
T 4f3v_A           85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAW------------MKAVVYGAAERW  151 (282)
T ss_dssp             EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHH------------HHHHHHHHTTCH
T ss_pred             hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHH------------HHHHHHHHcCCH
Confidence            5411           2267888899999999999999999999988888766 443            889999999999


Q ss_pred             HHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          515 SEAAAAYGDGLGLDPYN--SVLLCNRAACRSKLGQFEKAIEDCNAALNVR--PG-YSKARLRRADCFAKIEKWEASMQDY  589 (608)
Q Consensus       515 ~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~la~~~~~~g~~~~A~~~~  589 (608)
                      ++|+.+|++++...+..  ..+++++|.++..+|++++|+.+|++++...  |. ..++++.+|.++.++|+.++|...|
T Consensus       152 ~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l  231 (282)
T 4f3v_A          152 TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL  231 (282)
T ss_dssp             HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999888764221  4589999999999999999999999999654  55 6789999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHhh
Q 040048          590 EILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       590 ~~al~l~P~~~~~~~~L~  607 (608)
                      ++++..+|+ ..++..|.
T Consensus       232 ~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          232 EWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHSCC-HHHHHHHH
T ss_pred             HHHHhcCCc-HHHHHHHh
Confidence            999999999 99988875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.70  E-value=2.5e-16  Score=172.55  Aligned_cols=163  Identities=12%  Similarity=0.049  Sum_probs=137.5

Q ss_pred             cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048          421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA  500 (608)
Q Consensus       421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  500 (608)
                      .|++++|+..|+++++.+|++          ..++..+|.++...|++++|+..|+++++++|++..++.          
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------   61 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD----------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA----------   61 (568)
T ss_dssp             -------------------CC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHH----------
T ss_pred             CccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------
Confidence            478899999999999999875          899999999999999999999999999999999988876          


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI-  579 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-  579 (608)
                        .+|.++...|++++|+.+|+++++.+|++..+++++|.++..+|++++|+++|+++++++|++..++..+|.++..+ 
T Consensus        62 --~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  139 (568)
T 2vsy_A           62 --RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC  139 (568)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence              89999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             --CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          580 --EKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       580 --g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                        |++++|++.|+++++.+|++...+..
T Consensus       140 ~~g~~~~A~~~~~~al~~~p~~~~~~~~  167 (568)
T 2vsy_A          140 DWRALDVLSAQVRAAVAQGVGAVEPFAF  167 (568)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred             ccccHHHHHHHHHHHHhcCCcccChHHH
Confidence              99999999999999999987655443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.70  E-value=2.2e-16  Score=144.95  Aligned_cols=167  Identities=13%  Similarity=-0.010  Sum_probs=122.6

Q ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 040048          295 PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ  374 (608)
Q Consensus       295 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~  374 (608)
                      |.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++. ..| +.       
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p-~~-------   73 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQ-DN-------   73 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGC-CH-------
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccC-Ch-------
Confidence            344456777788888888888888888888888888888888888888888888888888877776 554 31       


Q ss_pred             HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048          375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL  454 (608)
Q Consensus       375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~  454 (608)
                                                                                                    ..
T Consensus        74 ------------------------------------------------------------------------------~~   75 (176)
T 2r5s_A           74 ------------------------------------------------------------------------------SY   75 (176)
T ss_dssp             ------------------------------------------------------------------------------HH
T ss_pred             ------------------------------------------------------------------------------HH
Confidence                                                                                          11


Q ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--
Q 040048          455 LVVRAQVN-LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN--  531 (608)
Q Consensus       455 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--  531 (608)
                      +..++.+. ...++..+|+..|+++++.+|++..++.            .+|.++...|++++|+..|+++++.+|+.  
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC------------ELAVQYNQVGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence            11111111 1111223478888888889998888776            88899999999999999999999988865  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALN  560 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  560 (608)
                      ..++..+|.++..+|++++|+..|++++.
T Consensus       144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          144 GEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            56888899999999999999999988875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.68  E-value=2.8e-16  Score=156.39  Aligned_cols=166  Identities=18%  Similarity=0.150  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048          407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK  486 (608)
Q Consensus       407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  486 (608)
                      ....+..+|..+...|++++|+..|++++..+|++          ..+++.+|.++...|++++|+..|++++..+|+..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            45778899999999999999999999999999985          89999999999999999999999999999999654


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 040048          487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-  565 (608)
Q Consensus       487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  565 (608)
                      ....            ..+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ 
T Consensus       186 ~~~~------------~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~  253 (287)
T 3qou_A          186 YQGL------------VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA  253 (287)
T ss_dssp             HHHH------------HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred             HHHH------------HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            3332            667778888999999999999999999999999999999999999999999999999999998 


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          566 -SKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       566 -~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                       ..++..++.++..+|+.++|...|++++.
T Consensus       254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          254 DGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence             89999999999999999999999999886

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.68  E-value=1.1e-15  Score=152.08  Aligned_cols=168  Identities=13%  Similarity=0.049  Sum_probs=113.6

Q ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 040048          295 PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ  374 (608)
Q Consensus       295 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~  374 (608)
                      |.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++. .+|+.        
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p~~--------  184 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQDT--------  184 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGCSH--------
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhcch--------
Confidence            666777777777777778888888888888878887777777788887777877777777777766 44432        


Q ss_pred             HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048          375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL  454 (608)
Q Consensus       375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~  454 (608)
                                                                                                   ...
T Consensus       185 -----------------------------------------------------------------------------~~~  187 (287)
T 3qou_A          185 -----------------------------------------------------------------------------RYQ  187 (287)
T ss_dssp             -----------------------------------------------------------------------------HHH
T ss_pred             -----------------------------------------------------------------------------HHH
Confidence                                                                                         122


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--H
Q 040048          455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN--S  532 (608)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~  532 (608)
                      ....+..+...++.++|+..|++++..+|++..++.            .+|.++...|++++|+..|++++..+|++  .
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~------------~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~  255 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT------------QLALQLHQVGRNEEALELLFGHLRXDLTAADG  255 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH------------HHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence            222333444555556666666666666666666654            66666666666666666666666666665  6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAALN  560 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al~  560 (608)
                      .++..++.++..+|+.++|+..|++++.
T Consensus       256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          256 QTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            6666666666666666666666666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=2.6e-16  Score=140.22  Aligned_cols=119  Identities=18%  Similarity=0.118  Sum_probs=112.6

Q ss_pred             HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 040048          426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNG  505 (608)
Q Consensus       426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg  505 (608)
                      .+-..+++++.++|++          ..+++.+|.++...|++++|+..|++++.++|+++.+|.            .+|
T Consensus        20 ~~~~~l~~al~l~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~------------~lg   77 (151)
T 3gyz_A           20 NSGATLKDINAIPDDM----------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM------------GLA   77 (151)
T ss_dssp             HTSCCTGGGCCSCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHH
T ss_pred             HCCCCHHHHhCCCHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHH
Confidence            3445688899999985          899999999999999999999999999999999999987            899


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  566 (608)
                      .++...|++++|+.+|++++.++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus        78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999865

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.66  E-value=4.4e-15  Score=149.24  Aligned_cols=214  Identities=12%  Similarity=0.050  Sum_probs=159.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 040048          277 AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------HRAHHRLANLYLRLGEVEK  350 (608)
Q Consensus       277 ~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~  350 (608)
                      .+++++|+.+|.++              |.+|...|++++|+.+|.+++++.+..      ..++..+|.+|..+|++++
T Consensus        29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   94 (307)
T 2ifu_A           29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE   94 (307)
T ss_dssp             SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence            58899999998876              668889999999999999999876432      4588899999999999999


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048          351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET  430 (608)
Q Consensus       351 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~  430 (608)
                      |+.+|++++. +.+.                    .++...+               ..++..+|.+|.. |++++|+.+
T Consensus        95 A~~~~~~Al~-l~~~--------------------~g~~~~~---------------a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           95 AVQYIEKASV-MYVE--------------------NGTPDTA---------------AMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             GHHHHHHHHH-HHHT--------------------TTCHHHH---------------HHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHH-HHHH--------------------cCCHHHH---------------HHHHHHHHHHHHc-CCHHHHHHH
Confidence            9999999876 3211                    1222111               2455566777766 777777777


Q ss_pred             hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048          431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK  510 (608)
Q Consensus       431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~  510 (608)
                      |++++.+.+......    ....++..+|.++..+|++++|+.+|++++.+.+.....+.      ....+..+|.++..
T Consensus       138 ~~~Al~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          138 YQQAAAVFENEERLR----QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT------CYKKCIAQVLVQLH  207 (307)
T ss_dssp             HHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHHH
Confidence            777766554321111    12688999999999999999999999999999888776432      34567889999999


Q ss_pred             cCCHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHH
Q 040048          511 QAKFSEAAAAYGDGLGLDPYNS-----VLLCNRAACRSKLGQFEKAIE  553 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~  553 (608)
                      .|++++|+.+|++++ ++|...     ..+..++..+ ..|+.+.+..
T Consensus       208 ~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          208 RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            999999999999999 988653     2344555555 5677655444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=4.9e-15  Score=144.05  Aligned_cols=230  Identities=15%  Similarity=0.034  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHH
Q 040048          301 RSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL-------ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL  373 (608)
Q Consensus       301 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~  373 (608)
                      ++..|.-+ .-+++.+|+..|.+++.++|+..++|..+       +.++..+++..+++..+.+.+. +.|...      
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-l~p~~l------   81 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-ISMSTL------   81 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT-CCGGGG------
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc-CChhhh------
Confidence            34444444 47889999999999999999999999998       7889888889999999999988 888762      


Q ss_pred             HHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 040048          374 QAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNAN  453 (608)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~  453 (608)
                      ..++.+.-.|   |+           +.........+...++.++...|++++|.+.|...+...|++          . 
T Consensus        82 ~a~~~~~g~y---~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~----------~-  136 (282)
T 4f3v_A           82 NARIAIGGLY---GD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH----------L-  136 (282)
T ss_dssp             CCEEECCTTT---CC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH----------H-
T ss_pred             hhhhccCCcc---cc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch----------H-
Confidence            1111100000   00           000012235677888999999999999999999999988874          6 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--CC-
Q 040048          454 LLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--PY-  530 (608)
Q Consensus       454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~-  530 (608)
                      +.+.+|.+++..+++++|+..|+++.... +...         ...+++.+|.++..+|++++|+.+|++++...  |. 
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~---------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~  206 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL---------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC  206 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc
Confidence            88999999999999999999999776543 1110         01233589999999999999999999998654  55 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048          531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD  574 (608)
Q Consensus       531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~  574 (608)
                      ...+++.+|.++.++|+.++|...|++++..+|+ ..++..|..
T Consensus       207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            5679999999999999999999999999999999 887766643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.66  E-value=2.5e-17  Score=167.88  Aligned_cols=196  Identities=18%  Similarity=0.202  Sum_probs=156.8

Q ss_pred             hcHHHHHHHHHH----HHHcCCCChHHHHHHHHHHHH------------HcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048          387 RDWNTLIQETRA----AIAGGADSAPQIYALQAEALL------------KLHKHQEADETLKNGPNFDVDETTRFFGPIG  450 (608)
Q Consensus       387 ~~~~~A~~~~~~----al~~~~~~~~~~~~~la~~~~------------~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~  450 (608)
                      +.|+.|+..+..    ++.+.|..   .|..+|....            .++++++|+..+++++...|+.         
T Consensus        79 ~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~---------  146 (336)
T 1p5q_A           79 YGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ---------  146 (336)
T ss_dssp             HHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH---------
T ss_pred             hHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH---------
Confidence            466777777666    66666654   3333333322            4566677777777777666653         


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE---VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                       +.++..+|.+++..|++++|+..|++++.+.|.+..   ..........+..+.++|.++...|++++|+.+|++++++
T Consensus       147 -a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          147 -STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             889999999999999999999999999999999831   0000000111344569999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 040048          528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS-MQDYEILKKE  595 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~~~al~l  595 (608)
                      +|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus       226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999 5677877754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.65  E-value=6.7e-15  Score=126.87  Aligned_cols=135  Identities=24%  Similarity=0.351  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS  532 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  532 (608)
                      .++..+|.++...|++++|+..+++++...|.+...+.            .+|.++...|++++|+.+|++++...|.+.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPRSA   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHH------------HHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence            46788999999999999999999999999999877765            889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      .++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|+++++++|++
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.65  E-value=1.6e-15  Score=166.16  Aligned_cols=164  Identities=13%  Similarity=0.043  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKH  357 (608)
Q Consensus       278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  357 (608)
                      |++++|+.+|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+|..+|++++|+..|++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             hCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048          358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF  437 (608)
Q Consensus       358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  437 (608)
                      ++. ++|++                                                                       
T Consensus        83 al~-~~p~~-----------------------------------------------------------------------   90 (568)
T 2vsy_A           83 ASD-AAPEH-----------------------------------------------------------------------   90 (568)
T ss_dssp             HHH-HCTTC-----------------------------------------------------------------------
T ss_pred             HHh-cCCCC-----------------------------------------------------------------------
Confidence            544 22221                                                                       


Q ss_pred             CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc---CCH
Q 040048          438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ---AKF  514 (608)
Q Consensus       438 ~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~---g~~  514 (608)
                                    ..++..+|.++...|++++|+..|+++++++|++..++.            .+|.++...   |++
T Consensus        91 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~~~~g~~  144 (568)
T 2vsy_A           91 --------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA------------QLLNWRRRLCDWRAL  144 (568)
T ss_dssp             --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCCTTH
T ss_pred             --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhhccccH
Confidence                          455566666666666666666666666666666655544            566666666   666


Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHH
Q 040048          515 SEAAAAYGDGLGLDPYNSVLLCNRA  539 (608)
Q Consensus       515 ~eA~~~~~~al~~~p~~~~~~~~la  539 (608)
                      ++|+..|+++++.+|.....+..++
T Consensus       145 ~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          145 DVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHHhcCCcccChHHHhC
Confidence            6666666666666666555555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.65  E-value=2.6e-16  Score=140.10  Aligned_cols=119  Identities=16%  Similarity=0.223  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA  551 (608)
Q Consensus       472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  551 (608)
                      -..|++++.++|++...+.            .+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~------------~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A   74 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLY------------SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA   74 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHH------------HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHH
Confidence            3467788888888777765            8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      +.+|++++.++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++.
T Consensus        75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            999999999999999999999999999999999999999999999987654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=6.3e-16  Score=153.38  Aligned_cols=105  Identities=24%  Similarity=0.366  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      |.++..++.+|..++..|+|++|+.+|++++..+|+++.+++++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      +|..+|++++|+..|++++. ++|++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~-l~p~~  105 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS-LAKEQ  105 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-HHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHH-hCccc
Confidence            99999999999999999887 55543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.65  E-value=4.2e-14  Score=141.44  Aligned_cols=243  Identities=9%  Similarity=0.012  Sum_probs=185.8

Q ss_pred             hhHHHHhh--hCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC--HHH
Q 040048          251 PTSLCRAL--STRMDPETLKIMGNEDYKAGN----------FAEALALYDAAISIDPNKASYRSNKTAALIALGR--LLE  316 (608)
Q Consensus       251 a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~e  316 (608)
                      +..+...+  .+|.+..+|+..+.++...+.          +++++.+++.++..+|.+..+|..++.++...|+  +++
T Consensus        49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~  128 (331)
T 3dss_A           49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR  128 (331)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHH
Confidence            44444444  347889999999999988776          7899999999999999999999999999999994  899


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHH
Q 040048          317 AVFECREAIRIEPHYHRAHHRLANLYLRLGE-VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE  395 (608)
Q Consensus       317 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  395 (608)
                      ++.++.++++++|.+..+|...+.++...|. ++++++++.+++. .+|.+                             
T Consensus       129 EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-~~p~N-----------------------------  178 (331)
T 3dss_A          129 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNFSN-----------------------------  178 (331)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCSCC-----------------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HCCCC-----------------------------
Confidence            9999999999999999999999999999998 5888888888877 66666                             


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI  475 (608)
Q Consensus       396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (608)
                                  ..+|..++.++........+          .+.                  +  -...+.++++++++
T Consensus       179 ------------~SAW~~R~~ll~~l~~~~~~----------~~~------------------~--~~~~~~~~eEle~~  216 (331)
T 3dss_A          179 ------------YSSWHYRSCLLPQLHPQPDS----------GPQ------------------G--RLPENVLLKELELV  216 (331)
T ss_dssp             ------------HHHHHHHHHHHHHHSCCC------------------------------------CCCHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHhhhcccc----------ccc------------------c--ccchHHHHHHHHHH
Confidence                        23444444444433221000          000                  0  00013578999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-
Q 040048          476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ----------AKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK-  544 (608)
Q Consensus       476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-  544 (608)
                      .+++..+|++..+|..+           .|.+....          +.++++++++.+++++.|++.+.+..++.+... 
T Consensus       217 ~~ai~~~P~d~SaW~Y~-----------r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~  285 (331)
T 3dss_A          217 QNAFFTDPNDQSAWFYH-----------RWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL  285 (331)
T ss_dssp             HHHHHHSTTCHHHHHHH-----------HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHH-----------HHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhh
Confidence            99999999999999622           22222222          468999999999999999997766666554333 


Q ss_pred             --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          545 --LGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       545 --~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                        .|..++...++.+.++++|....-|..++.-+
T Consensus       286 ~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          286 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             CTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence              57889999999999999999877776665443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.62  E-value=2.1e-15  Score=149.51  Aligned_cols=71  Identities=20%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          295 PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       295 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      |.++..++.+|.++...|++++|+..|++++.++|++..++..+|.+|..+|++++|+..|++++. ++|++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~   71 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQS   71 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTC
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCC
Confidence            567788999999999999999999999999999999999999999999999999999999999988 66665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.62  E-value=3.8e-15  Score=128.68  Aligned_cols=110  Identities=26%  Similarity=0.368  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHH
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-------SKAR  569 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~  569 (608)
                      .+.++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+.+|+++++++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            355677999999999999999999999999999999999999999999999999999999999998765       4688


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          570 LRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      .++|.++..+|++++|+++|++++++.|+ +++...|.
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            99999999999999999999999999985 56655543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.62  E-value=7.8e-15  Score=126.21  Aligned_cols=110  Identities=25%  Similarity=0.462  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      +..+..+|..++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhC------CCCHHHHHHhh
Q 040048          578 KIEKWEASMQDYEILKKEA------PDDEEVDQALQ  607 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~------P~~~~~~~~L~  607 (608)
                      .+|++++|+.+|+++++++      |++..++..|.
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~  119 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  119 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence            9999999999999999999      99999887764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.61  E-value=1.5e-14  Score=136.92  Aligned_cols=176  Identities=11%  Similarity=0.024  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC----
Q 040048          391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG----  466 (608)
Q Consensus       391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g----  466 (608)
                      +|+..|+++.+.+   .+..++.+|.+|...+++++|+.+|+++.+..            ++.+++.+|.+|.. +    
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------------~~~a~~~lg~~y~~-~g~~~   67 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------------DGDALALLAQLKIR-NPQQA   67 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHTTS-STTSC
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHc-CCCCC
Confidence            4667788887763   36789999999999999999999999997642            48999999999998 7    


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCC--CCHHHHHHHHH
Q 040048          467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDP--YNSVLLCNRAA  540 (608)
Q Consensus       467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p--~~~~~~~~la~  540 (608)
                      ++++|+.+|+++.+  +.++.+..            .+|.+|..    .+++++|+.+|+++++..+  .++.++++||.
T Consensus        68 ~~~~A~~~~~~A~~--~g~~~a~~------------~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~  133 (212)
T 3rjv_A           68 DYPQARQLAEKAVE--AGSKSGEI------------VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL  133 (212)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHH------------HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHH------------HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence            99999999999965  45666654            89999988    8999999999999999987  35899999999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 040048          541 CRSK----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI-E-----KWEASMQDYEILKKEAP  597 (608)
Q Consensus       541 ~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g-----~~~~A~~~~~~al~l~P  597 (608)
                      +|..    .+++++|+.+|++++++ +.++.+++.||.+|... |     ++++|+.+|+++.+...
T Consensus       134 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          134 IYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999    89999999999999998 77788999999999875 3     89999999999999854

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=1.2e-15  Score=134.56  Aligned_cols=120  Identities=14%  Similarity=0.245  Sum_probs=108.1

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       473 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  552 (608)
                      ..|++++.++|++...+.            .+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~------------~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~   72 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLY------------ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL   72 (142)
T ss_dssp             ----CCTTCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHH------------HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH
Confidence            456667777777766654            89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      .+|++++.++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++...
T Consensus        73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence            9999999999999999999999999999999999999999999998876443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.61  E-value=1.5e-15  Score=133.96  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY-------NSV-----LLCNRAACRSKLGQFEKAIEDCNAALNV--  561 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--  561 (608)
                      ..+..+..+|..++..|+|++|+..|+++++++|+       +..     +|.++|.++..+|+|++|+.+|+++|++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            34556679999999999999999999999999998       444     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          562 -----RPGYSKAR----LRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       562 -----~p~~~~a~----~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                           +|++..+|    +++|.++..+|++++|+.+|+++++++|++..+...
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~  141 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG  141 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                 99999999    999999999999999999999999999988765443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.61  E-value=9.1e-14  Score=131.56  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=82.9

Q ss_pred             chhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 040048          250 EPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG----RLLEAVFECREAI  325 (608)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al  325 (608)
                      +|..+++......++.+++.+|.++...+++++|+.+|+++++.  .++.+++.+|.+|.. +    ++++|+.+|+++.
T Consensus         4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            35566666666778888888888888888888888888888765  567888888888877 6    7888888888885


Q ss_pred             hhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCC
Q 040048          326 RIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGP  360 (608)
Q Consensus       326 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  360 (608)
                      +  +.++.+++.||.+|..    .+++++|+.+|++++.
T Consensus        81 ~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           81 E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred             H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            4  5677888888888876    7778888888877766

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.60  E-value=8e-15  Score=129.26  Aligned_cols=129  Identities=17%  Similarity=0.161  Sum_probs=114.7

Q ss_pred             HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048          429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL  508 (608)
Q Consensus       429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~  508 (608)
                      ..|++++..+|++          ...++.+|.+++..|++++|+..|++++..+|++..++.            .+|.++
T Consensus         5 ~~l~~al~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~   62 (142)
T 2xcb_A            5 GTLAMLRGLSEDT----------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFL------------GLGACR   62 (142)
T ss_dssp             ----CCTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHH
T ss_pred             hhHHHHHcCCHHH----------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHH------------HHHHHH
Confidence            5688889998875          889999999999999999999999999999999999886            899999


Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      ...|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+.+|++++++.|+++.....+..+...+
T Consensus        63 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A           63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998876665555554433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.59  E-value=2.4e-15  Score=133.71  Aligned_cols=120  Identities=17%  Similarity=0.151  Sum_probs=111.4

Q ss_pred             HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048          429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL  508 (608)
Q Consensus       429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~  508 (608)
                      ..|++++.++|++          ..+++.+|.++...|++++|+..|++++..+|.+..++.            .+|.++
T Consensus         8 ~~~~~al~~~p~~----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~   65 (148)
T 2vgx_A            8 GTIAMLNEISSDT----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL------------GLGACR   65 (148)
T ss_dssp             CSHHHHTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHH
T ss_pred             hhHHHHHcCCHhh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHH------------HHHHHH
Confidence            4567778888875          889999999999999999999999999999999999886            899999


Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048          509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL  570 (608)
Q Consensus       509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  570 (608)
                      ...|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++++.|+++....
T Consensus        66 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           66 QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            99999999999999999999999999999999999999999999999999999998765543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.59  E-value=5.3e-15  Score=135.46  Aligned_cols=131  Identities=17%  Similarity=0.099  Sum_probs=119.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 040048          462 NLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAAC  541 (608)
Q Consensus       462 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  541 (608)
                      +...|++++|+..+++++..+|.+..++.            .+|.++...|++++|+.+|++++.++|.++.++..+|.+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   87 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWA------------LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV   87 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            35678999999999999999999998876            899999999999999999999999999999999999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          542 -RSKLGQF--EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       542 -~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                       +...|++  ++|+.+|++++..+|++..+++.+|.+|..+|++++|+.+|+++++++|++.....
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence             8899999  99999999999999999999999999999999999999999999999999865443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.58  E-value=6.9e-14  Score=125.83  Aligned_cols=133  Identities=19%  Similarity=0.230  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..+..+|.++...|++++|+..|++++..+|.+..++.            .+|.++...|++++|+.+|++++..+|.+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG------------NRSLAYLRTECYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            788999999999999999999999999999999988775            89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR--ADCFAKIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--a~~~~~~g~~~~A~~~~~~al~l~  596 (608)
                      +.+++.+|.++..+|++++|+.+|++++++.|++..++..+  +..+...|++++|+..++++..+.
T Consensus        81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            99999999999999999999999999999999999888554  555889999999999999987653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.58  E-value=3.1e-14  Score=134.25  Aligned_cols=134  Identities=18%  Similarity=0.186  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ...++.+|.++...|++++|+..|++++  ++ +..++            ..+|.++...|++++|+.+|++++..+|.+
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~   70 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRIC------------FNIGCMYTILKNMTEAEKAFTRSINRDKHL   70 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5667889999999999999999999985  33 44444            489999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS----------------KARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +.+++.+|.++..+|++++|+.+|++++++.|++.                .+++.+|.+|..+|++++|+.+|++++++
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999888766                99999999999999999999999999999


Q ss_pred             CCCCH
Q 040048          596 APDDE  600 (608)
Q Consensus       596 ~P~~~  600 (608)
                      +|++.
T Consensus       151 ~p~~~  155 (213)
T 1hh8_A          151 KSEPR  155 (213)
T ss_dssp             CCSGG
T ss_pred             Ccccc
Confidence            99763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.58  E-value=7.9e-13  Score=145.61  Aligned_cols=329  Identities=6%  Similarity=-0.051  Sum_probs=193.6

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC--CCHH
Q 040048          259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR---LLEAVFECREAIRIEP--HYHR  333 (608)
Q Consensus       259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p--~~~~  333 (608)
                      .+|.+.+.|..+.......++++.+...|++++...|.....|...+......|+   ++.+...|++++...|  .+..
T Consensus        61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~  140 (679)
T 4e6h_A           61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS  140 (679)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred             HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence            4589999999999999999999999999999999999999999999999999999   9999999999999884  6788


Q ss_pred             HHHHHHHHHHHcCCH--------HHHHHHHHHhCCC--C-CchhHHHHHHHHHHHHH---hHHHHHhhcHHHHHHHHHHH
Q 040048          334 AHHRLANLYLRLGEV--------EKAIYHFKHAGPE--A-DQVDIAKAKSLQAHLNK---CTDAKRTRDWNTLIQETRAA  399 (608)
Q Consensus       334 ~~~~la~~~~~~g~~--------~~A~~~~~~al~~--~-~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~a  399 (608)
                      .|..........++.        +.....|++++..  . ++.....+.....+...   ...+...++.+.+...|+++
T Consensus       141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra  220 (679)
T 4e6h_A          141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL  220 (679)
T ss_dssp             HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence            888887766665553        3344778877641  2 34332211111111100   00112334456666666666


Q ss_pred             HHcCCCChHHHHHHHHHHHHH-------------cCChHH----------------------------------------
Q 040048          400 IAGGADSAPQIYALQAEALLK-------------LHKHQE----------------------------------------  426 (608)
Q Consensus       400 l~~~~~~~~~~~~~la~~~~~-------------~g~~~e----------------------------------------  426 (608)
                      +.........+|......-..             ..+|+.                                        
T Consensus       221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~  300 (679)
T 4e6h_A          221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ  300 (679)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred             HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence            654222222222111110000             011111                                        


Q ss_pred             ---------------------------HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 040048          427 ---------------------------ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL-AAIQKA  478 (608)
Q Consensus       427 ---------------------------A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  478 (608)
                                                 ....|++++...|.          ...+|+..+..+...|+.++|. ..|+++
T Consensus       301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~----------~~~lW~~ya~~~~~~~~~~~a~r~il~rA  370 (679)
T 4e6h_A          301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF----------APEIWFNMANYQGEKNTDSTVITKYLKLG  370 (679)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                                       22334444444443          3888999999999999999997 999999


Q ss_pred             HHhCCCChHHHHHHHHHH--------------------------------------------HHHHHHHHHHHHHHcCCH
Q 040048          479 AKQDSNNKEVNMVMRKAK--------------------------------------------GVAAARSNGNALFKQAKF  514 (608)
Q Consensus       479 l~~~p~~~~~~~~l~~~~--------------------------------------------~~~~~~~lg~~~~~~g~~  514 (608)
                      +...|.+...|..+....                                            ....|...+....+.|..
T Consensus       371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l  450 (679)
T 4e6h_A          371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL  450 (679)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence            999999877665221100                                            001223333333344445


Q ss_pred             HHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          515 SEAAAAYGDGLGL-DPYNSVLLCNRAACRSKLGQ-FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       515 ~eA~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                      +.|..+|.+|++. .+....+|...|.+....++ ++.|...|+++++..|+++..|...+......|+.+.|..+|+++
T Consensus       451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS  530 (679)
T ss_dssp             HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            5555555555544 22223344444444444332 555555555555555555555555555555555555555555555


Q ss_pred             HHhCC
Q 040048          593 KKEAP  597 (608)
Q Consensus       593 l~l~P  597 (608)
                      +...|
T Consensus       531 l~~~~  535 (679)
T 4e6h_A          531 IDKIS  535 (679)
T ss_dssp             TTTSS
T ss_pred             HHhcC
Confidence            55554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.57  E-value=5.7e-14  Score=134.22  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..++.+|..++..|++++|+..|++++...|.++....         +++.+|.++...|++++|+..|+++++.+|++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---------a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQ---------VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            788999999999999999999999999999998763211         23489999999999999999999999999987


Q ss_pred             H---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHH
Q 040048          532 S---VLLCNRAACRSK------------------LGQFEKAIEDCNAALNVRPGYSKAR-----------------LRRA  573 (608)
Q Consensus       532 ~---~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~a~-----------------~~la  573 (608)
                      .   .+++.+|.++..                  .|++++|+..|+++++..|++..++                 +.+|
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a  154 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA  154 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   488999999886                  5789999999999999999986554                 6789


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          574 DCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      .+|...|++++|+..|+++++.+|+++..
T Consensus       155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  183 (225)
T 2yhc_A          155 EYYTERGAWVAVVNRVEGMLRDYPDTQAT  183 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence            99999999999999999999999998743

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.56  E-value=4.2e-13  Score=134.70  Aligned_cols=235  Identities=9%  Similarity=-0.054  Sum_probs=176.8

Q ss_pred             hhHHHHhh--hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc-C-CHHHHHHHHHHHH
Q 040048          251 PTSLCRAL--STRMDPETLKIMGNEDYKAG-NFAEALALYDAAISIDPNKASYRSNKTAALIAL-G-RLLEAVFECREAI  325 (608)
Q Consensus       251 a~~~~~~~--~~~~~~~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~eA~~~~~~al  325 (608)
                      +..+...+  .+|.+..+|+..+.++...| .+++++.++++++..+|++..+|..++.++..+ + ++++++.++.+++
T Consensus        73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            44444444  35889999999999999999 599999999999999999999999999999998 8 9999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048          326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD  405 (608)
Q Consensus       326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  405 (608)
                      +.+|.+..+|...+.++...|.++.           ...                      ..+.++++.++++++.+|.
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~-----------~~~----------------------~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGR-----------ISE----------------------AQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTC-----------CCH----------------------HHHHHHHHHHHHHHHHCTT
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccc-----------cch----------------------hhHHHHHHHHHHHHHhCCC
Confidence            9999999999999999988776540           000                      1223444444444444444


Q ss_pred             ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHH
Q 040048          406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR-------FEDALAAIQKA  478 (608)
Q Consensus       406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a  478 (608)
                      +                                             ..+|..++.++...++       ++++++++.++
T Consensus       200 N---------------------------------------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~a  234 (349)
T 3q7a_A          200 N---------------------------------------------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKS  234 (349)
T ss_dssp             C---------------------------------------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred             C---------------------------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            3                                             4555555655555554       78999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHhhcCC------CCCH
Q 040048          479 AKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF--------------------SEAAAAYGDGLGLD------PYNS  532 (608)
Q Consensus       479 l~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~--------------------~eA~~~~~~al~~~------p~~~  532 (608)
                      +.++|++..+|.            .+..++...|+.                    .+-...+...+...      +..+
T Consensus       235 I~~~P~n~SaW~------------Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  302 (349)
T 3q7a_A          235 IHLIPHNVSAWN------------YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP  302 (349)
T ss_dssp             HHHCTTCHHHHH------------HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred             HHhCCCCHHHHH------------HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence            999999999997            445555555542                    33444444444433      4678


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHH
Q 040048          533 VLLCNRAACRSKLGQFEKAIEDCNAAL-NVRPGYSKARLRRADC  575 (608)
Q Consensus       533 ~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~  575 (608)
                      .++..++.+|...|+.++|+++|+... +.+|-....|..++..
T Consensus       303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            899999999999999999999999987 6688777777665543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.56  E-value=2.5e-14  Score=128.99  Aligned_cols=111  Identities=31%  Similarity=0.418  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGL------------------DPYNSVLLCNRAACRSKLGQFEKAIEDCNA  557 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  557 (608)
                      ..+..+..+|..++..|+|++|+..|.+++.+                  +|....+|+++|.+|..+|++++|+.+|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34556679999999999999999999999998                  677778999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHh
Q 040048          558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE-EVDQAL  606 (608)
Q Consensus       558 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~L  606 (608)
                      ++.++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+++ .+...|
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 555554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.56  E-value=2.1e-13  Score=134.23  Aligned_cols=174  Identities=14%  Similarity=0.030  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN----  484 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----  484 (608)
                      ..+..+|.++...|++++|+.++.+.+..+|..        ++.+++..++.++..+|+.+.|.+.++++.+.+|+    
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~  172 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAE--------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG  172 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence            455688999999999999999999988777621        24899999999999999999999999999999883    


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          485 NKEVNMVMRKAKGVAAARSNGNALFKQA--KFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALN  560 (608)
Q Consensus       485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~  560 (608)
                      +..+...+          .-|++.+..|  ++.+|..+|+++....|+  ....+++   ++..+|++++|...++.+++
T Consensus       173 ~d~~l~~L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          173 DNEMILNL----------AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHHHHHHH----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHS
T ss_pred             chHHHHHH----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHH
Confidence            12222211          3344466556  999999999999988886  3444444   89999999999999998887


Q ss_pred             c----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          561 V----------RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       561 ~----------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      .          +|+++.++.+++.+...+|+  +|.++++++.+.+|+++-+...
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence            6          48899999999999999998  8999999999999999987653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.56  E-value=2.1e-14  Score=146.15  Aligned_cols=180  Identities=13%  Similarity=0.096  Sum_probs=143.4

Q ss_pred             ccccccC----ccCCCCCCCCccccccccccCC-------CcccccccCCCCCCCCCCcchhHHHHhh--hCCCCHHHHH
Q 040048          202 GVRGNNN----TNKNNNRYPNSVMGNVVKKQND-------HPQNHYNYNPPKPASSSSAEPTSLCRAL--STRMDPETLK  268 (608)
Q Consensus       202 A~~~~~~----~~~~~~~~~~a~lg~i~~~~~~-------~a~~~y~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~  268 (608)
                      |+..+..    ++.+.|.++....|......+.       .+...|..++...            ...  ..+.++.+++
T Consensus        84 al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~------------~~a~~~~p~~a~~~~  151 (336)
T 1p5q_A           84 AIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESW------------EMNSEEKLEQSTIVK  151 (336)
T ss_dssp             HHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGG------------GCCHHHHHHHHHHHH
T ss_pred             HHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchh------------cCCHHHHHHHHHHHH
Confidence            5555555    7778888866667655432222       1223333332221            111  1355688999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 040048          269 IMGNEDYKAGNFAEALALYDAAISIDPNK---------------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR  333 (608)
Q Consensus       269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~  333 (608)
                      .+|.+++..|+|++|+.+|++++.++|++               ..+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus       152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~  231 (336)
T 1p5q_A          152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK  231 (336)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            99999999999999999999999999998               589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH-HHHHHHH
Q 040048          334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI-QETRAAI  400 (608)
Q Consensus       334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al  400 (608)
                      +++.+|.+|..+|++++|+..|++++. ++|.+      ..++..++.++...++++++. ..|.+++
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQ-LYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 99988      567788888888888888884 4555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.55  E-value=3.7e-12  Score=140.32  Aligned_cols=340  Identities=9%  Similarity=-0.049  Sum_probs=247.0

Q ss_pred             hHHHHhhh--CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCCH----HH----
Q 040048          252 TSLCRALS--TRMDPETLKIMGNEDYKAGN---FAEALALYDAAISIDP--NKASYRSNKTAALIALGRL----LE----  316 (608)
Q Consensus       252 ~~~~~~~~--~~~~~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~----~e----  316 (608)
                      ...+...+  -|.....|...+......|+   ++.+..+|++++...|  .+...|..........++.    ++    
T Consensus        86 R~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~  165 (679)
T 4e6h_A           86 YETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNI  165 (679)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHH
Confidence            44444443  37889999999999999999   9999999999999984  5677888877666665553    33    


Q ss_pred             HHHHHHHHHh---h-CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHhCCCCCchhHHHHHH----H------
Q 040048          317 AVFECREAIR---I-EPHYHRAHHRLANLYL---------RLGEVEKAIYHFKHAGPEADQVDIAKAKS----L------  373 (608)
Q Consensus       317 A~~~~~~al~---~-~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~p~~~~~~~~----~------  373 (608)
                      ....|++++.   . ++....+|........         ..++.+.+..+|.+++. +..........    .      
T Consensus       166 vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~  244 (679)
T 4e6h_A          166 VIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQ  244 (679)
T ss_dssp             HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCc
Confidence            4478888876   3 6777778877766543         34457888999999986 53322111000    0      


Q ss_pred             -----------------HHHHHH----------------------------------hHHHHHh-----h---------c
Q 040048          374 -----------------QAHLNK----------------------------------CTDAKRT-----R---------D  388 (608)
Q Consensus       374 -----------------~~~~~~----------------------------------~~~~~~~-----~---------~  388 (608)
                                       ...+..                                  ...+...     .         .
T Consensus       245 ~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~  324 (679)
T 4e6h_A          245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH  324 (679)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence                             000000                                  0000000     0         1


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH-HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048          389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD-ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR  467 (608)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~-~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~  467 (608)
                      .......|++++...|.. +.+|...+..+...|+.++|. .+|++++...|..          ..+|+.++.+....|+
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~-~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s----------~~Lwl~~a~~ee~~~~  393 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFA-PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS----------AVLAFSLSEQYELNTK  393 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhCC
Confidence            123446788888888875 689999999999999999997 9999999988874          7889999999999999


Q ss_pred             HHHHHHHHHHHHHhC-----------CC-----------ChHHHHHHHHHH-------H----------------HHHHH
Q 040048          468 FEDALAAIQKAAKQD-----------SN-----------NKEVNMVMRKAK-------G----------------VAAAR  502 (608)
Q Consensus       468 ~~~A~~~~~~al~~~-----------p~-----------~~~~~~~l~~~~-------~----------------~~~~~  502 (608)
                      +++|...|++++...           |.           ...+|..+....       .                ...|.
T Consensus       394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi  473 (679)
T 4e6h_A          394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence            999999999999752           43           222343332210       0                11223


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHH
Q 040048          503 SNGNALFKQA-KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG---YSKARLRRADCFAK  578 (608)
Q Consensus       503 ~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~  578 (608)
                      ..|.+....+ +++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+   ....|......-..
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~  553 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK  553 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            3344444444 5899999999999999999999999999999999999999999999999883   56788888888899


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          579 IEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       579 ~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                      .|+.+.+...++++.+..|+++.+.
T Consensus       554 ~G~~~~~~~v~~R~~~~~P~~~~~~  578 (679)
T 4e6h_A          554 VGSLNSVRTLEKRFFEKFPEVNKLE  578 (679)
T ss_dssp             TCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcHHH
Confidence            9999999999999999999987654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.55  E-value=4.3e-14  Score=127.76  Aligned_cols=105  Identities=31%  Similarity=0.389  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      +..+..+|.+++..|++++|+.+|++++.++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..+|+.+|.+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34456999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          578 KIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      .+|++++|+.+|+++++++|++..+
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~  115 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSD  115 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHH
Confidence            9999999999999999999999873

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=2.7e-14  Score=122.20  Aligned_cols=100  Identities=17%  Similarity=0.095  Sum_probs=91.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      +.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|+
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHH
Q 040048          582 WEASMQDYEILKKEAPDDEE  601 (608)
Q Consensus       582 ~~~A~~~~~~al~l~P~~~~  601 (608)
                      +++|+..|+++++++|++..
T Consensus       101 ~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999998764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.55  E-value=2.7e-13  Score=127.80  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV  488 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  488 (608)
                      ..++.+|.++...|++++|+..|++++  .|.           +.++..+|.++...|++++|+..|++++..+|.+..+
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   73 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPH-----------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA   73 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence            346778999999999999999999996  332           7899999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----------------HHHHHHHHHHHHcCCHHHHH
Q 040048          489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----------------VLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~  552 (608)
                      +.            .+|.++...|++++|+..|++++...|.+.                .+++++|.++..+|++++|+
T Consensus        74 ~~------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A           74 YF------------QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             HH------------HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HH------------HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence            75            899999999999999999999999888766                99999999999999999999


Q ss_pred             HHHHHHHhcCCCCHH
Q 040048          553 EDCNAALNVRPGYSK  567 (608)
Q Consensus       553 ~~~~~al~~~p~~~~  567 (608)
                      .+|++++++.|++..
T Consensus       142 ~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          142 EQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHcCccccc
Confidence            999999999998743

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.1e-13  Score=119.01  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..+..+|..++..|++++|+..|++++.++|++..++.            .+|.++...|++++|+..|++++.++|++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS------------NRAAALAKLMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            788999999999999999999999999999999988876            89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHc
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVR------PGYSKARLRRADCFAKI  579 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~  579 (608)
                      +.+++.+|.++..+|++++|+..|+++++++      |++..++..++.+..++
T Consensus        72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999      99999999888887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=1.2e-14  Score=157.98  Aligned_cols=135  Identities=12%  Similarity=-0.037  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCC
Q 040048          452 ANLLVVRAQVNLACG--RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA-KFSEAAAAYGDGLGLD  528 (608)
Q Consensus       452 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~  528 (608)
                      ..+|..++.++...+  +++++++.+.++++.+|.+..+|.            ..+.++...| .++++++++.++++.+
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~------------~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWD------------YRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHH------------HHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence            788888999999999  779999999999999999999987            8889999999 8999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH----------
Q 040048          529 PYNSVLLCNRAACRSKL--------------GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA----------  584 (608)
Q Consensus       529 p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~----------  584 (608)
                      |.+..+|+.++.++..+              +.+++|++++.+|+.++|++..+|+.++.++...+++++          
T Consensus       175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~  254 (567)
T 1dce_A          175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREE  254 (567)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTT
T ss_pred             CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCC
Confidence            99999999999999885              568999999999999999999999999999999888666          


Q ss_pred             --HHHHHHHHHHhCCC
Q 040048          585 --SMQDYEILKKEAPD  598 (608)
Q Consensus       585 --A~~~~~~al~l~P~  598 (608)
                        |+.+|.+++.++|.
T Consensus       255 ~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          255 ACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             TEEEEEEEEEECTTBT
T ss_pred             ceEEEEeccceecccc
Confidence              55556666666664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.54  E-value=1.4e-14  Score=135.40  Aligned_cols=172  Identities=13%  Similarity=0.079  Sum_probs=125.4

Q ss_pred             HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---
Q 040048          414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM---  490 (608)
Q Consensus       414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---  490 (608)
                      .+......|++++|.+.+.......+.          .+..+..+|..++..|++++|+..|++++.+.|.++....   
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~   79 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQ----------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL   79 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence            345555667777777666655433332          2778999999999999999999999999999888761100   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048          491 -VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       491 -~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  569 (608)
                       ..........+..+|.++...|++++|+.+|++++.++|.+..+++.+|.++..+|++++|+.+|+++++++|++..++
T Consensus        80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  159 (198)
T 2fbn_A           80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR  159 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence             0000111234569999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHh
Q 040048          570 LRRADCFAKIEKWEASM-QDYEILKKE  595 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~-~~~~~al~l  595 (608)
                      ..++.++..+++..++. ..|.+.+..
T Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          160 NSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999998887 555555543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.54  E-value=1.9e-13  Score=117.57  Aligned_cols=133  Identities=26%  Similarity=0.354  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      ++|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA  404 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  404 (608)
                      .|++++|+..+++++. ..|.+      ...+..++.++...|++++|+..+.+++..+|
T Consensus        82 ~~~~~~A~~~~~~~~~-~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALE-LDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             hcCHHHHHHHHHHHHH-hCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            9999999999999887 66655      33455555666666666666666666655544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.53  E-value=9.4e-14  Score=138.45  Aligned_cols=174  Identities=13%  Similarity=0.081  Sum_probs=136.5

Q ss_pred             HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048          413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM  492 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  492 (608)
                      ..+..+...|++++|+..+++++...+.......    ....+..+|.++...+++++|+.+|++++...+...+...  
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~--  153 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ----FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ--  153 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH----HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH--
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH--
Confidence            3466777888888888888887776554321100    0234446899999999999999999999997655443211  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                          .+.++..+|.+|...|++++|+.+|+++++.       .+....+++++|.+|..+|++++|+.++++++++.+..
T Consensus       154 ----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          154 ----NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence                2334569999999999999999999999952       22335689999999999999999999999999976443


Q ss_pred             ------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 040048          566 ------SKARLRRADCFAKIE-KWEASMQDYEILKKEA  596 (608)
Q Consensus       566 ------~~a~~~la~~~~~~g-~~~~A~~~~~~al~l~  596 (608)
                            +.+++.+|.+|..+| ++++|+++|++++.+.
T Consensus       230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                  789999999999999 5799999999999864

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=3.5e-14  Score=125.22  Aligned_cols=103  Identities=18%  Similarity=0.123  Sum_probs=97.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------Chh-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPN-------KAS-----YRSNKTAALIALGRLLEAVFECREAIRI---  327 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~---  327 (608)
                      .+..++.+|..++..|+|++|+.+|+++|+++|+       +..     +|.++|.++..+|++++|+.+|+++|++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4678899999999999999999999999999999       443     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          328 ----EPHYHRAH----HRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       328 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                          +|++..+|    +++|.++..+|++++|+..|+++++ ++|++
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle-l~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE-MIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh-cCCCc
Confidence                99999999    9999999999999999999999999 88877

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.52  E-value=1.7e-13  Score=136.59  Aligned_cols=176  Identities=15%  Similarity=0.079  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM  490 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  490 (608)
                      +...+..+...|++++|+..+.++++..+......    .....+..+|.++...|++++|+..|++++...+.....+.
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ----QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH----HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            33456666777777777777776665544321110    01455677899999999999999999999987665432221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048          491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL---GLDPYNS----VLLCNRAACRSKLGQFEKAIEDCNAALNVRP  563 (608)
Q Consensus       491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  563 (608)
                            .+.++..+|.+|...|++++|+.+|++++   +..|++.    .+++++|.+|..+|++++|+.+|++++++.+
T Consensus       154 ------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          154 ------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                  13345699999999999999999999999   4455543    6899999999999999999999999998753


Q ss_pred             C------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 040048          564 G------YSKARLRRADCFAKIEKWEAS-MQDYEILKKEA  596 (608)
Q Consensus       564 ~------~~~a~~~la~~~~~~g~~~~A-~~~~~~al~l~  596 (608)
                      +      ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus       228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            3      278899999999999999999 88899998764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.52  E-value=3.1e-13  Score=115.77  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ...+..+|.++...|++++|+..|++++...|++..++.            .+|.++...|++++|+.++++++...|.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC------------NRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH------------HHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            788999999999999999999999999999999887765            88999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW  582 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~  582 (608)
                      +.+++.+|.++...|++++|+.+|++++++.|++..++..+|.++..+|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999998875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=4e-13  Score=120.72  Aligned_cols=134  Identities=20%  Similarity=0.340  Sum_probs=119.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      .+..++.+|..++..|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|++++.++|++..+++.+|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHH
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIA  401 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  401 (608)
                      ..+|++++|+..|++++. +.|.+..    ....+..+..+...|++++|+..+.+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~-~~p~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVK-VKPHDKD----AKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHH-HSTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH-hCCCCHH----HHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            999999999999999998 8887732    22335556667778888888888776543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.51  E-value=5.8e-14  Score=121.21  Aligned_cols=101  Identities=25%  Similarity=0.387  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------HRAHH  336 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~  336 (608)
                      +.++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++       ..++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999998765       35889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCCCCch
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPEADQV  365 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~  365 (608)
                      .+|.++..+|++++|+..|++++. ..|+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~-~~~~  115 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS-EFRD  115 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-HSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh-hCcC
Confidence            999999999999999999999987 5554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.51  E-value=1.8e-13  Score=117.92  Aligned_cols=120  Identities=15%  Similarity=0.192  Sum_probs=110.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 040048          450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP  529 (608)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p  529 (608)
                      .....+..+|.++...|++++|+..|++++..+|.+..++.            .+|.++...|++++|+.+|++++..+|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~a~~~~~   81 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYS------------NRAACYTKLLEFQLALKDCEECIQLEP   81 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHH------------HHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            35889999999999999999999999999999998877765            889999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       530 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      .+..+++.+|.++...|++++|+.+|++++.++|.+..++..++.++..+|+
T Consensus        82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999988774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=3.1e-13  Score=146.77  Aligned_cols=162  Identities=9%  Similarity=-0.038  Sum_probs=151.3

Q ss_pred             ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHH
Q 040048          423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR----------FEDALAAIQKAAKQDSNNKEVNMVM  492 (608)
Q Consensus       423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l  492 (608)
                      ..++|+..+.+++..+|++          ..+|..++.++...|+          +++++..++++++.+|.+..+|.  
T Consensus        44 ~~eeal~~~~~~l~~nP~~----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~--  111 (567)
T 1dce_A           44 LDESVLELTSQILGANPDF----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH--  111 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred             CCHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH--
Confidence            3467788999999988885          8899999999999888          99999999999999999999997  


Q ss_pred             HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHH
Q 040048          493 RKAKGVAAARSNGNALFKQA--KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG-QFEKAIEDCNAALNVRPGYSKAR  569 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~  569 (608)
                                ..+.++...+  ++++|+++++++++.+|.+..+|..++.++..+| .+++++++++++++.+|.+..+|
T Consensus       112 ----------hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW  181 (567)
T 1dce_A          112 ----------HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW  181 (567)
T ss_dssp             ----------HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred             ----------HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence                      8899999999  7799999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          570 LRRADCFAKI--------------EKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       570 ~~la~~~~~~--------------g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ..++.++..+              +.+++|++++.+++.++|+|..+|..+
T Consensus       182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~  232 (567)
T 1dce_A          182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH  232 (567)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred             HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            9999999986              668999999999999999999998765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=1.8e-13  Score=123.60  Aligned_cols=115  Identities=13%  Similarity=0.098  Sum_probs=108.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  530 (608)
                      .+..+..+|.+++..|++++|+..|++++.++|++..++.            .+|.++...|++++|+.+|++++.++|+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLS------------NRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4889999999999999999999999999999999988876            8999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      +..+|+.+|.+|..+|++++|+.+|+++++++|++..+|+.++....
T Consensus        78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887776665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.50  E-value=4.1e-14  Score=132.25  Aligned_cols=140  Identities=14%  Similarity=0.143  Sum_probs=111.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH---
Q 040048          456 VVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS---  532 (608)
Q Consensus       456 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---  532 (608)
                      ...+......|+++++.+.+.......+..            +..+..+|..++..|+|++|+.+|++++.+.|.++   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   75 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQS------------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD   75 (198)
T ss_dssp             --------------CCCSGGGCCHHHHHHH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHHHHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc
Confidence            345556667777777777766444332222            33445899999999999999999999999998887   


Q ss_pred             -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          533 -------------VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       533 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                                   .++.++|.++..+|++++|+.+|++++.++|++..+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A           76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence                         8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 040048          600 EEVDQALQ  607 (608)
Q Consensus       600 ~~~~~~L~  607 (608)
                      ..++..|.
T Consensus       156 ~~~~~~l~  163 (198)
T 2fbn_A          156 LDIRNSYE  163 (198)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887663

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.50  E-value=2.2e-13  Score=118.55  Aligned_cols=105  Identities=30%  Similarity=0.513  Sum_probs=100.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      ..+|.+++..|++++|+.+|++++..+|.++.+++.+|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|+
T Consensus        13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   92 (137)
T 3q49_B           13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   92 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-----CHHHHHHh
Q 040048          582 WEASMQDYEILKKEAPD-----DEEVDQAL  606 (608)
Q Consensus       582 ~~~A~~~~~~al~l~P~-----~~~~~~~L  606 (608)
                      +++|+.+|+++++++|+     +..+...|
T Consensus        93 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l  122 (137)
T 3q49_B           93 YDEAIANLQRAYSLAKEQRLNFGDDIPSAL  122 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHChhHHHHHHHHHHHHH
Confidence            99999999999999998     67766655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=5.5e-13  Score=112.01  Aligned_cols=110  Identities=27%  Similarity=0.498  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      +..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|+++.+++.+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34566999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          578 KIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      .+|++++|+.+|+++++++|++..++..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  113 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  113 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999999999999887664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.49  E-value=3e-14  Score=151.35  Aligned_cols=158  Identities=20%  Similarity=0.238  Sum_probs=130.1

Q ss_pred             HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE---VNMVMRKAK  496 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~  496 (608)
                      .++++++|+..++.++...|+.          +..+..+|.+++..|+|++|+..|++++.+.|.+..   .........
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~----------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  315 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQ----------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF  315 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence            4556667777777766665553          789999999999999999999999999999998831   000000111


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      .+..+.++|.++..+|+|++|+.+|++++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            23455699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHH
Q 040048          577 AKIEKWEASMQ  587 (608)
Q Consensus       577 ~~~g~~~~A~~  587 (608)
                      ..++++++|..
T Consensus       396 ~~~~~~~~a~~  406 (457)
T 1kt0_A          396 KKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.49  E-value=1.9e-13  Score=116.87  Aligned_cols=100  Identities=15%  Similarity=0.045  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      .++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCchh
Q 040048          346 GEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~~  366 (608)
                      |++++|+..|++++. ++|.+
T Consensus        99 g~~~~A~~~~~~al~-~~P~~  118 (121)
T 1hxi_A           99 HNANAALASLRAWLL-SQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHH-hCcCC
Confidence            999999999999998 87765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.48  E-value=1.8e-12  Score=129.17  Aligned_cols=177  Identities=13%  Similarity=0.118  Sum_probs=144.7

Q ss_pred             HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH-----HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccC
Q 040048          373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP-----QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFG  447 (608)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~  447 (608)
                      ...+...+..+...+++++|+..+.++++..+....     ..+..+|.++...|++++|+..+++++...+.....+  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--  152 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--  152 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT--
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH--
Confidence            445667788889999999999999999998776432     3456788999999999999999999987765432221  


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048          448 PIGNANLLVVRAQVNLACGRFEDALAAIQKAA---KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG  524 (608)
Q Consensus       448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  524 (608)
                        ....++..+|.+|...|++++|+.+|++++   +..+++....        +.++.++|.+|...|++++|+.+|+++
T Consensus       153 --~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          153 --QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch--------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence              126789999999999999999999999999   4556554322        134569999999999999999999999


Q ss_pred             hcCCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 040048          525 LGLDPY------NSVLLCNRAACRSKLGQFEKA-IEDCNAALNV  561 (608)
Q Consensus       525 l~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  561 (608)
                      +.+.+.      .+.+++++|.+|..+|++++| ..+|++++.+
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            987432      278999999999999999999 8889999875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.47  E-value=5e-13  Score=115.14  Aligned_cols=109  Identities=24%  Similarity=0.488  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      .++..+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+.+|++++++.|++..+++.+|.++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          579 IEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       579 ~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|++++|+.+|+++++++|++..++..|.
T Consensus        97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  125 (133)
T 2lni_A           97 MKDYTKAMDVYQKALDLDSSCKEAADGYQ  125 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCGGGTHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            99999999999999999999988876653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.47  E-value=9.4e-14  Score=127.05  Aligned_cols=131  Identities=12%  Similarity=0.142  Sum_probs=115.4

Q ss_pred             HHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048          418 LLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG  497 (608)
Q Consensus       418 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  497 (608)
                      +...|++++|+..+++++..+|++          ..++..+|.++...|++++|+..|++++.++|++..++.       
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------   82 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQN----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA-------   82 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH-------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------
Confidence            345677888888888888888864          899999999999999999999999999999999988775       


Q ss_pred             HHHHHHHHHH-HHHcCCH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048          498 VAAARSNGNA-LFKQAKF--SEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL  570 (608)
Q Consensus       498 ~~~~~~lg~~-~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  570 (608)
                           .+|.+ +...|++  ++|+.+|++++..+|.+..+++.+|.++...|++++|+..|+++++++|++.....
T Consensus        83 -----~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A           83 -----ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             -----HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             -----HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence                 88999 8899999  99999999999999999999999999999999999999999999999999865443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.46  E-value=2.4e-12  Score=109.12  Aligned_cols=117  Identities=29%  Similarity=0.377  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ..++..+|.++...|++++|+..|++++...|.+..++.            .+|.++...|++++|+.+|++++...|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence            677888888889999999999999999888888777664            78888888899999999999998888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      ..++..+|.++...|++++|+.+|++++...|++..++..+|.++...|
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            8888889999999999999999999999888888888888888887654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-12  Score=114.31  Aligned_cols=106  Identities=34%  Similarity=0.521  Sum_probs=101.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      ..+|..+...|++++|+.+|++++..+|++   ..++..+|.++...|++++|+.+|++++.+.|++..+++.+|.++..
T Consensus        32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  111 (148)
T 2dba_A           32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK  111 (148)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence            489999999999999999999999999987   89999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          579 IEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       579 ~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|++++|+.+|+++++++|++..++..+.
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (148)
T 2dba_A          112 LGRLDQAVLDLQRCVSLEPKNKVFQEALR  140 (148)
T ss_dssp             HTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            99999999999999999999999887663

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=2.1e-12  Score=108.37  Aligned_cols=115  Identities=21%  Similarity=0.215  Sum_probs=109.1

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  530 (608)
                      .+..+..+|.++...|++++|+..|++++...|.+..++.            .+|.++...|++++|+..+++++..+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS------------NRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH------------HHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            3788999999999999999999999999999999988775            8999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      ++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+..
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999888753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=1.2e-12  Score=112.49  Aligned_cols=106  Identities=15%  Similarity=0.071  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS---VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRAD  574 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~  574 (608)
                      ++.+|.++...|++++|+..|++++...|+++   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            45889999999999999999999999999887   799999999999999999999999999999999   899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          575 CFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       575 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ++..+|++++|+..|+++++.+|+++.+...+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~  116 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ  116 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            99999999999999999999999999876643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.45  E-value=2.5e-12  Score=110.01  Aligned_cols=109  Identities=33%  Similarity=0.563  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      ...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|+++.+++.+|.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          578 KIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .+|++++|+.+|+++++++|++..++..+
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNL  120 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence            99999999999999999999999887765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.45  E-value=5.2e-13  Score=120.27  Aligned_cols=130  Identities=15%  Similarity=0.117  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQ--------DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD  523 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~  523 (608)
                      +..+..+|..++..|++++|+..|.+++.+        .|.+.....  ........+.++|.++...|++++|+..+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE--LDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH--HHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            788999999999999999999999999998        444432110  0112234556999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHH
Q 040048          524 GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS-KARLRRADCFAKIEKWE  583 (608)
Q Consensus       524 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~  583 (608)
                      ++.++|.++.+|+.+|.+|..+|++++|+.+|+++++++|++. .+...++.+...+++..
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 66778888776665443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.45  E-value=2e-13  Score=120.15  Aligned_cols=99  Identities=17%  Similarity=0.244  Sum_probs=92.3

Q ss_pred             HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF----------EKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      .+.+.|++|+..|+++++++|+++.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          579 IE-----------KWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       579 ~g-----------~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +|           ++++|+++|++|++++|++...+..|.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            85           899999999999999999999888763

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.45  E-value=1.1e-12  Score=130.51  Aligned_cols=177  Identities=12%  Similarity=-0.009  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS------YRSNKTAALIALGRLLEAVFECREAIRIEPHY------HR  333 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~  333 (608)
                      .+...+..++..|+|++|+.+|++++...+..+.      .+..+|.++...|++++|+.+|++++.+.+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3445678899999999999999999998777654      34458888888999999999999999865432      34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh-HHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048          334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD-IAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA  412 (608)
Q Consensus       334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  412 (608)
                      ++..+|.+|..+|++++|+.+|++++. ..... .....                                   ...++.
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~~~~~~-----------------------------------~~~~~~  200 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILK-QLEALHDNEEF-----------------------------------DVKVRY  200 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSSCCHHH-----------------------------------HHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccchhH-----------------------------------HHHHHH
Confidence            789999999999999999999999874 11000 00011                                   134566


Q ss_pred             HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 040048          413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG-RFEDALAAIQKAAKQD  482 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  482 (608)
                      .+|.+|..+|++++|+.++++++++.+......    ..+.++..+|.++..+| ++++|+..|++++.+.
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMA----LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT----THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH----HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            777777777777777777777776544322111    23789999999999999 5799999999998754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.44  E-value=4.2e-13  Score=142.52  Aligned_cols=126  Identities=18%  Similarity=0.194  Sum_probs=110.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---------------ASYRSNKTAALIALGRLLEAVFECREAI  325 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al  325 (608)
                      +..+..++.+|..++..|+|++|+.+|++++.++|.+               ..+|+++|.||..+|++++|+.+|++++
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998               6899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH
Q 040048          326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI  393 (608)
Q Consensus       326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  393 (608)
                      +++|++..+|+.+|.+|..+|++++|+..|++++. ++|++      ..++..++.++...+++.++.
T Consensus       345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-l~P~~------~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-VNPQN------KAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 99987      455666666666666666554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.43  E-value=1.4e-12  Score=113.36  Aligned_cols=119  Identities=13%  Similarity=0.073  Sum_probs=109.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  530 (608)
                      .+..+..+|.+++..|++++|+..|++++..+|++..++.            .+|.++...|++++|+.+|++++.++|+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT------------NRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            4899999999999999999999999999999999988876            8999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCC
Q 040048          531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG-----YSKARLRRADCFAKIEK  581 (608)
Q Consensus       531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~  581 (608)
                      ++.+++.+|.++..+|++++|+.+|++++++.|+     ...++..+..+..+...
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888     66777777776655443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.42  E-value=3.6e-12  Score=125.46  Aligned_cols=260  Identities=14%  Similarity=0.080  Sum_probs=190.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN  340 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  340 (608)
                      .+|+.++.+= -.|-.|+|..++.-.   -++.|.+ ....+.+.++|+.+|++....        ..+....+...++.
T Consensus        12 ~~~~~lf~ik-n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~   79 (310)
T 3mv2_B           12 QDPMDYFNIK-QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQ   79 (310)
T ss_dssp             ---CCTHHHH-HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHH
T ss_pred             CCcHHHHHHH-HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHH
Confidence            4555566544 356689999888843   3444444 345667778888899887421        12223334445554


Q ss_pred             HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHH
Q 040048          341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA-DSAPQIYALQAEALL  419 (608)
Q Consensus       341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~la~~~~  419 (608)
                      .+.  ++   |+..+++.+. ..+..      ...++.++.++...|++++|+..+.+.+..+| ....+++..++.+++
T Consensus        80 ~~~--~~---a~~~l~~l~~-~~~~~------~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L  147 (310)
T 3mv2_B           80 FLD--TK---NIEELENLLK-DKQNS------PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL  147 (310)
T ss_dssp             HHT--TT---CCHHHHHTTT-TSCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred             Hhc--cc---HHHHHHHHHh-cCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence            442  22   7888888876 43232      23345778888889999999999999988877 456789999999999


Q ss_pred             HcCChHHHHHHhhcCCCCCCc-----ccccccCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048          420 KLHKHQEADETLKNGPNFDVD-----ETTRFFGPIGNANLLVVRAQVNLACG--RFEDALAAIQKAAKQDSNNKEVNMVM  492 (608)
Q Consensus       420 ~~g~~~eA~~~l~~al~~~p~-----~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l  492 (608)
                      .+|+.+.|.+.++++.+.+|+     +         ...+.+.-|++.+..|  ++.+|...|+++....|+......  
T Consensus       148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d---------~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l--  216 (310)
T 3mv2_B          148 LNNNVSTASTIFDNYTNAIEDTVSGDN---------EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG--  216 (310)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCHHHHHHH---------HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH--
T ss_pred             HCCCHHHHHHHHHHHHhcCccccccch---------HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH--
Confidence            999999999999998888872     2         1333444455577667  999999999999888876222221  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040048          493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR  562 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  562 (608)
                                .+. ++..+|++++|...++.+++.          +|+++.++.+++.+...+|+  +|.++++++.+..
T Consensus       217 ----------Lln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          217 ----------LLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             ----------HHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             ----------HHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence                      222 899999999999999988876          48899999999999999998  9999999999999


Q ss_pred             CCCHHHH
Q 040048          563 PGYSKAR  569 (608)
Q Consensus       563 p~~~~a~  569 (608)
                      |+++.+.
T Consensus       284 P~hp~i~  290 (310)
T 3mv2_B          284 HEHAFIK  290 (310)
T ss_dssp             CCCHHHH
T ss_pred             CCChHHH
Confidence            9998654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.42  E-value=4.6e-12  Score=107.35  Aligned_cols=108  Identities=28%  Similarity=0.419  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      .+..+|.++...|++++|+.+|++++...|.+..+++.+|.++...|++++|+.+|++++...|++..++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          580 EKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      |++++|+.+|+++++++|++..++..|.
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~  118 (125)
T 1na0_A           91 GDYDEAIEYYQKALELDPNNAEAKQNLG  118 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            9999999999999999999999887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.41  E-value=9.1e-13  Score=109.60  Aligned_cols=98  Identities=18%  Similarity=0.213  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--YSKARLRRADCFAKI-  579 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~-  579 (608)
                      .+|.++...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++..|+  +..+++.+|.++..+ 
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~   90 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE   90 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999  999999999999999 


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 040048          580 EKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~  600 (608)
                      |++++|+++|++++...|.++
T Consensus        91 ~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           91 GKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             SCSHHHHHHHHHHGGGCCCCC
T ss_pred             CCHHHHHHHHHHHhhcccCCC
Confidence            999999999999999999763

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.40  E-value=1.7e-12  Score=120.99  Aligned_cols=163  Identities=13%  Similarity=0.053  Sum_probs=125.3

Q ss_pred             HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048          419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV  498 (608)
Q Consensus       419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  498 (608)
                      +..|++++|...++.... +|.         ....++..+|.++...|++++|+..+++++.+........      ..+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~   66 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPA---------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT------AEH   66 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STT---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH------HHH
T ss_pred             cccccHHHHHHHHHHhcC-ChH---------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH------HHH
Confidence            456788888882222221 221         1388999999999999999999999999998544322111      113


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGL---DPY----NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--Y----  565 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----  565 (608)
                      ..+..+|.++...|++++|+.+|++++.+   .++    ...++.++|.++...|++++|+.++++++.+.+.  +    
T Consensus        67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  146 (203)
T 3gw4_A           67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI  146 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence            34569999999999999999999999987   442    3567899999999999999999999999976322  2    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          566 SKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       566 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                      ..++..+|.++...|++++|+.+|++++++..
T Consensus       147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            34568999999999999999999999998743

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.40  E-value=8.6e-14  Score=148.51  Aligned_cols=136  Identities=19%  Similarity=0.244  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..+..+|.++...|++++|+..|+++++++|++..++.            .+|.++...|++++|+.+|+++++++|++
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG------------NRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            445566788889999999999999999999999988876            89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCC
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC--FAKIEKWEASMQDYE-----------ILKKEAPD  598 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~-----------~al~l~P~  598 (608)
                      +.+++++|.+|..+|++++|+++|+++++++|++..++..++.+  +..+|++++|++.++           ++++++|+
T Consensus        74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            99999999999999999999999999999999999999999998  899999999999999           77777776


Q ss_pred             C
Q 040048          599 D  599 (608)
Q Consensus       599 ~  599 (608)
                      .
T Consensus       154 ~  154 (477)
T 1wao_1          154 Y  154 (477)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.40  E-value=2.9e-13  Score=144.41  Aligned_cols=139  Identities=20%  Similarity=0.283  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      +++++.+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH--HHHc
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA--LLKL  421 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~--~~~~  421 (608)
                      .+|++++|+..|+++++ ++|++                                         ..++..++.+  +...
T Consensus        86 ~~g~~~eA~~~~~~al~-~~p~~-----------------------------------------~~~~~~l~~~~~~~~~  123 (477)
T 1wao_1           86 ALGKFRAALRDYETVVK-VKPHD-----------------------------------------KDAKMKYQECNKIVKQ  123 (477)
T ss_dssp             HHTCHHHHHHHHHHHHH-HSTTC-----------------------------------------TTHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH-hCCCC-----------------------------------------HHHHHHHHHHHHHHHH
Confidence            99999999999999988 66665                                         2334444554  6667


Q ss_pred             CChHHHHHHhh-----------cCCCCCCccccc
Q 040048          422 HKHQEADETLK-----------NGPNFDVDETTR  444 (608)
Q Consensus       422 g~~~eA~~~l~-----------~al~~~p~~~~~  444 (608)
                      |++++|+..++           +++...|+....
T Consensus       124 g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~  157 (477)
T 1wao_1          124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP  157 (477)
T ss_dssp             HHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred             HHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence            77778888777           777777765433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.40  E-value=2.7e-13  Score=138.05  Aligned_cols=151  Identities=16%  Similarity=0.129  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM-----VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG  526 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~  526 (608)
                      +..+..+|..++..|++++|+..|++++.+.|.+.....     ..........+.++|.++...|+|++|+.+|++++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            778889999999999999999999999999988652100     000000123567999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          527 LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC-FAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       527 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      ++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ....+..+++...|.+++...|+++..
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999 455678889999999999999988754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.4e-12  Score=110.86  Aligned_cols=116  Identities=18%  Similarity=0.255  Sum_probs=107.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN---KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      ....+..+|..+...|++++|+..|++++...|++   ..++            ..+|.++...|++++|+.+|++++..
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLH------------RNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHH------------HHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            58999999999999999999999999999999987   3333            48999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      +|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999888887543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.39  E-value=4.3e-12  Score=108.61  Aligned_cols=108  Identities=26%  Similarity=0.358  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-------SKARL  570 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~  570 (608)
                      +..+..+|.++...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++...|++       ..+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            44567999999999999999999999999999999999999999999999999999999999998877       89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          571 RRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       571 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .+|.++...|++++|+.+|++++++.| ++.+...+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l  118 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            999999999999999999999999999 57666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.39  E-value=6.8e-12  Score=107.69  Aligned_cols=117  Identities=16%  Similarity=0.093  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 040048          453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK---EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP  529 (608)
Q Consensus       453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p  529 (608)
                      ..++.+|.+++..|++++|+..|++++...|++.   .++            +.+|.++...|++++|+.+|++++...|
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~------------~~lg~~~~~~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNAL------------YWLGESYYATRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4567899999999999999999999999999987   444            4899999999999999999999999999


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          530 YN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       530 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      ++   +.+++.+|.++..+|++++|+..|++++...|++..+...+..+....++
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99   89999999999999999999999999999999998887777666555444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.39  E-value=8.1e-10  Score=118.01  Aligned_cols=315  Identities=7%  Similarity=-0.080  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---CCCCHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR-LLEAVFECREAIRI---EPHYHRAHHRLA  339 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~---~p~~~~~~~~la  339 (608)
                      +...+..+...+-.|+++.+..+|++++...| +...|..........+. .+.....|+.++..   ++.....|....
T Consensus        14 aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi   92 (493)
T 2uy1_A           14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI   92 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            44555555555666999999999999999988 77788888877777663 45677788888874   678889998888


Q ss_pred             HHHH----HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH--------hHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 040048          340 NLYL----RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNK--------CTDAKRTRDWNTLIQETRAAIAGGADSA  407 (608)
Q Consensus       340 ~~~~----~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~al~~~~~~~  407 (608)
                      ..+.    ..++.+.+...|++++. +..............+..        .........+..|...|..+....+...
T Consensus        93 ~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s  171 (493)
T 2uy1_A           93 EEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS  171 (493)
T ss_dssp             HHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence            7765    35678899999999998 654443222111111110        0111223445555555555554322222


Q ss_pred             HHHHHHHHHHHHHc--CC-----hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          408 PQIYALQAEALLKL--HK-----HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK  480 (608)
Q Consensus       408 ~~~~~~la~~~~~~--g~-----~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (608)
                      ...|......-...  +-     .+.....|++++...|..          ..+|+..+..+...|+.++|...|++++.
T Consensus       172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~----------~~lW~~ya~~~~~~~~~~~ar~i~erAi~  241 (493)
T 2uy1_A          172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA----------EEVYFFYSEYLIGIGQKEKAKKVVERGIE  241 (493)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33454433332221  11     344677899998877764          89999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHH----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048          481 QDSNNKEVNMVMRKAK----------------------------GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS  532 (608)
Q Consensus       481 ~~p~~~~~~~~l~~~~----------------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  532 (608)
                      . |.+...+..+....                            ....|...+....+.+..+.|..+|+++ ...+...
T Consensus       242 ~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~  319 (493)
T 2uy1_A          242 M-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGP  319 (493)
T ss_dssp             H-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCH
T ss_pred             C-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCCh
Confidence            9 99877665443320                            0123455556666678899999999999 4433456


Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          533 VLLCNRAACRSKLG-QFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       533 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                      .+|...|.+....+ +.+.|...|+.+++..|+.+..|...+......|+.+.|...|+++
T Consensus       320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777787777666 6999999999999999999988888888888999999999998887

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.39  E-value=1.3e-12  Score=121.77  Aligned_cols=173  Identities=12%  Similarity=-0.003  Sum_probs=120.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC
Q 040048          274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI------EPHYHRAHHRLANLYLRLGE  347 (608)
Q Consensus       274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~la~~~~~~g~  347 (608)
                      ++..|++++|+..++......+....++..+|.++...|++++|+.++++++.+      .+....++..+|.+|...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            457899999999666655533366789999999999999999999999999984      34446789999999999999


Q ss_pred             HHHHHHHHHHhCCCCCchhH-HHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048          348 VEKAIYHFKHAGPEADQVDI-AKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE  426 (608)
Q Consensus       348 ~~~A~~~~~~al~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e  426 (608)
                      +++|+..+++++. +..... .....                                   ..++..+|.++...|++++
T Consensus        82 ~~~A~~~~~~al~-~~~~~~~~~~~~-----------------------------------~~~~~~lg~~~~~~g~~~~  125 (203)
T 3gw4_A           82 WDAARRCFLEERE-LLASLPEDPLAA-----------------------------------SANAYEVATVALHFGDLAG  125 (203)
T ss_dssp             HHHHHHHHHHHHH-HHHHSCCCHHHH-----------------------------------HHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCccHHHH-----------------------------------HHHHHHHHHHHHHhCCHHH
Confidence            9999999999876 311110 00011                                   2345555666666666666


Q ss_pred             HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048          427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK  486 (608)
Q Consensus       427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  486 (608)
                      |+..+++++...+......    ....++..+|.++...|++++|+..+++++.+.....
T Consensus       126 A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  181 (203)
T 3gw4_A          126 ARQEYEKSLVYAQQADDQV----AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE  181 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            6666666554322111111    1256678899999999999999999999988755443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.38  E-value=6.4e-13  Score=112.66  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=87.1

Q ss_pred             HcCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          510 KQAKFSEAAAAYGDGLGL---DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM  586 (608)
Q Consensus       510 ~~g~~~eA~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  586 (608)
                      ..|++++|+.+|+++++.   +|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHH
Q 040048          587 QDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       587 ~~~~~al~l~P~~~~~~~  604 (608)
                      ..|+++++..|+++.+..
T Consensus        82 ~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHH
Confidence            999999999999998754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.1e-12  Score=137.82  Aligned_cols=219  Identities=6%  Similarity=-0.025  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS-----------------YRSNKTAALIALGRLLEAVFECREAIR  326 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~al~  326 (608)
                      |.+....|..+...|+|++|++.|.++++..|....                 ++..+|.+|...|++++|++++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455677888899999999999999999998887532                 466777777777777777777777776


Q ss_pred             hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHH
Q 040048          327 IEPHYH------RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAI  400 (608)
Q Consensus       327 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  400 (608)
                      +.+...      .+...++.++...|++++|+..+++++. ..+..                                  
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~----------------------------------  128 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE-FAKRE----------------------------------  128 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH-HHHHS----------------------------------
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHh----------------------------------
Confidence            544331      2344556666666666666666666543 11111                                  


Q ss_pred             HcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          401 AGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK  480 (608)
Q Consensus       401 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  480 (608)
                       ........++..+|.++...|++++|+..+++++.......+    ......++..++.+|...|++++|...+++++.
T Consensus       129 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          129 -KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD----KPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             -SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC----STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence             011123457778888888888888888888776543221111    112378999999999999999999999999988


Q ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          481 QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       481 ~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      ..+........     ....+..+|.++...++|.+|..+|.+++..
T Consensus       204 ~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          204 AANSIYCPTQT-----VAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHSCCCHHH-----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HhhcCCCchHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            65432211100     1223457899999999999999999999864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.37  E-value=1.5e-12  Score=108.24  Aligned_cols=106  Identities=25%  Similarity=0.307  Sum_probs=100.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH--YHRAHHR  337 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~  337 (608)
                      .|.++..++.+|.+++..|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|+  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHhCCCCCchh
Q 040048          338 LANLYLRL-GEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       338 la~~~~~~-g~~~~A~~~~~~al~~~~p~~  366 (608)
                      +|.++... |++++|+.++++++. ..|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~-~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKL-EHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGG-GCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhh-cccCC
Confidence            99999999 999999999999988 66543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.37  E-value=4.1e-12  Score=112.99  Aligned_cols=142  Identities=16%  Similarity=0.112  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      ..++..+|.++...|++++|+..+++++.+.+.......      .+.++..+|.++...|++++|+.+|++++.+.+..
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            778999999999999999999999999988654322111      13345689999999999999999999999875432


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          532 ------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       532 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                            ..++..+|.++...|++++|+.++++++++.+.      ...++..+|.++...|++++|++++++++++....
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence                  568899999999999999999999999987432      25678999999999999999999999999886543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.36  E-value=6.9e-12  Score=129.12  Aligned_cols=137  Identities=15%  Similarity=0.171  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN----MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      +..+..+|..++..|++++|+..|++++++.+......    ..-........+.++|.++..+|++++|+.+|++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            67788999999999999999999999998433321000    00000112345569999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD  588 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~  588 (608)
                      +|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++++++.+.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.34  E-value=9.8e-12  Score=106.36  Aligned_cols=117  Identities=13%  Similarity=0.091  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..+..+|.++...|++++|+..|++++...|.+..++.            .+|.++...|++++|+.+|++++...|.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIT------------NQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH------------HHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            778999999999999999999999999999999987765            89999999999999999999999998876


Q ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          532 -------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       532 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                             ..+++.+|.++...|++++|+.+|++++++.| ++..+..++.+...+++
T Consensus        72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence                   88999999999999999999999999999998 58888888888766543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.33  E-value=1.7e-12  Score=132.15  Aligned_cols=103  Identities=26%  Similarity=0.312  Sum_probs=94.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----------------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-----------------SYRSNKTAALIALGRLLEAVFECREAI  325 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~eA~~~~~~al  325 (608)
                      .+..++.+|..++..|+|++|+.+|++++.+.|++.                 .+|+++|.+|..+|++++|+.+|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999876                 489999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      +++|++..+|+.+|.+|..+|++++|+..|++++. ++|++
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-l~p~~  297 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-YAPDD  297 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCC
Confidence            99999999999999999999999999999999999 88876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.33  E-value=8.6e-12  Score=128.38  Aligned_cols=107  Identities=26%  Similarity=0.507  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          501 ARSNGNALFKQAKFSEAAAAYGDGLG----------------LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       501 ~~~lg~~~~~~g~~~eA~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                      +..+|..++..|++++|+..|+++++                .+|.+..+|.++|.+|..+|++++|+.+|+++++++|+
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            45899999999999999999999998                77788899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       565 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ++.+++.+|.+|..+|++++|+.+|+++++++|++..++..|.
T Consensus       306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~  348 (370)
T 1ihg_A          306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  348 (370)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999887664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.33  E-value=1.6e-12  Score=114.36  Aligned_cols=91  Identities=19%  Similarity=0.217  Sum_probs=83.5

Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRL----------LEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       275 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      -+.+.|++|+..|+++++++|+++.+|+++|.++..++++          ++|+..|+++++++|++..+|+.+|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHhCCCCCchh
Q 040048          345 LG-----------EVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       345 ~g-----------~~~~A~~~~~~al~~~~p~~  366 (608)
                      +|           ++++|+.+|+++++ ++|++
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~  124 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVD-EQPDN  124 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHH-hCCCC
Confidence            85           78888888888888 88877

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.29  E-value=1.3e-11  Score=109.73  Aligned_cols=137  Identities=18%  Similarity=0.140  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA------SYRSNKTAALIALGRLLEAVFECREAIRIEPHY------  331 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------  331 (608)
                      +.++..+|.+++..|++++|+.+|++++.+.+...      .++..+|.++...|++++|+.++++++.+.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            56789999999999999999999999998865432      478999999999999999999999999875443      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHH
Q 040048          332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIA  401 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  401 (608)
                      ..++..+|.++...|++++|+..+++++. +.+...........+..++.++...|++++|+..++++++
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA-IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            56889999999999999999999999876 3222212223344455555555555555555555555544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.3e-11  Score=129.75  Aligned_cols=211  Identities=9%  Similarity=0.049  Sum_probs=165.9

Q ss_pred             HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh----------------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCC
Q 040048          375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA----------------PQIYALQAEALLKLHKHQEADETLKNGPNFD  438 (608)
Q Consensus       375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  438 (608)
                      ..+..+..+...|+|++|++.|.++++..+...                ..++..+|.+|...|++++|++.+.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            345667778888999999999999999876532                2457889999999999999999999998765


Q ss_pred             CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 040048          439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAA  518 (608)
Q Consensus       439 p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~  518 (608)
                      +.......    ...+...++.++...|++++|+.++++++...+......      ..+..+..+|.++...|+|++|+
T Consensus        86 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~  155 (434)
T 4b4t_Q           86 MQFAKSKT----VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF------LKHSLSIKLATLHYQKKQYKDSL  155 (434)
T ss_dssp             HTSCHHHH----HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS------SHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHccchHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHHHccChHHHH
Confidence            44211111    135566788888899999999999999987643321100      01223458999999999999999


Q ss_pred             HHHHHhhcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHHcCCHHHH
Q 040048          519 AAYGDGLGL------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP---GY----SKARLRRADCFAKIEKWEAS  585 (608)
Q Consensus       519 ~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~a~~~la~~~~~~g~~~~A  585 (608)
                      .++.+++..      .+....++..+|.+|...|++++|..+|++++.+.+   +.    ...+..+|.++...|++++|
T Consensus       156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence            999998864      233467999999999999999999999999998642   22    35678889999999999999


Q ss_pred             HHHHHHHHHh
Q 040048          586 MQDYEILKKE  595 (608)
Q Consensus       586 ~~~~~~al~l  595 (608)
                      ..+|.++++.
T Consensus       236 ~~~~~~a~~~  245 (434)
T 4b4t_Q          236 FSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.27  E-value=4e-12  Score=107.64  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=85.2

Q ss_pred             HcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 040048          464 ACGRFEDALAAIQKAAKQD---SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAA  540 (608)
Q Consensus       464 ~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  540 (608)
                      ..|++++|+..|++++++.   |++..++            ..+|.++...|++++|+.+|+++++.+|+++.+++.+|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECY------------LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            4689999999999999994   5555554            499999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          541 CRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                      ++..+|++++|+..|++++...|+++........+
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999999999999999998765443333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.22  E-value=7.2e-12  Score=104.34  Aligned_cols=96  Identities=28%  Similarity=0.382  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------HRAHH  336 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~  336 (608)
                      +++.++.+|.+++..|++++|+.+|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      88999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHh
Q 040048          337 RLANLYLRLGEVEKAIYHFKHA  358 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~a  358 (608)
                      .+|.++..+|++++|+..+++.
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHhHhhhHhHHHHh
Confidence            9999999999988887776654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=9.2e-12  Score=103.68  Aligned_cols=95  Identities=26%  Similarity=0.384  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY------SKARLR  571 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~  571 (608)
                      +..+..+|.++...|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|+++++++|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34566999999999999999999999999999999999999999999999999999999999999999      899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 040048          572 RADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       572 la~~~~~~g~~~~A~~~~~~a  592 (608)
                      +|.++..+|++++|+..|++.
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHhHhhhHhHHHHh
Confidence            999999999988887766543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.16  E-value=2.9e-10  Score=95.59  Aligned_cols=85  Identities=19%  Similarity=0.134  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          515 SEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       515 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      ++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..+|+.+|.+|..+|++++|+.+|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC
Q 040048          595 EAPDD  599 (608)
Q Consensus       595 l~P~~  599 (608)
                      ++|.+
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            98843

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.15  E-value=3.3e-10  Score=90.37  Aligned_cols=85  Identities=29%  Similarity=0.440  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .++..++.+|.+++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC
Q 040048          342 YLRLG  346 (608)
Q Consensus       342 ~~~~g  346 (608)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.09  E-value=1e-09  Score=87.45  Aligned_cols=81  Identities=31%  Similarity=0.404  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      .+..+|.++...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             C
Q 040048          580 E  580 (608)
Q Consensus       580 g  580 (608)
                      |
T Consensus        91 g   91 (91)
T 1na3_A           91 G   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.05  E-value=2.8e-08  Score=106.07  Aligned_cols=338  Identities=9%  Similarity=-0.035  Sum_probs=200.8

Q ss_pred             cccccccCCCCCCCCCCcchhHHHHhhhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCCChhHHHHHHH
Q 040048          232 PQNHYNYNPPKPASSSSAEPTSLCRALST-RMDPETLKIMGNEDYKAGN-FAEALALYDAAISI---DPNKASYRSNKTA  306 (608)
Q Consensus       232 a~~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~lg~~~~~~g~-~~~Al~~~~~al~~---~p~~~~~~~~la~  306 (608)
                      +...|..++...|.+..+.+..++...+. -++.+.|..........++ .+.....|+.++..   +|.+..+|.....
T Consensus        14 aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~   93 (493)
T 2uy1_A           14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE   93 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence            33444444444444444555555555544 3477888877777766663 35567788888864   6777788877776


Q ss_pred             HHH----HcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHH-------------HcCCHHHHHHHHHHhCCCCCchhHH
Q 040048          307 ALI----ALGRLLEAVFECREAIRIEPHYHR-AHHRLANLYL-------------RLGEVEKAIYHFKHAGPEADQVDIA  368 (608)
Q Consensus       307 ~~~----~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~-------------~~g~~~~A~~~~~~al~~~~p~~~~  368 (608)
                      .+.    ..|+.+.+...|++++..-+.... .|......-.             ....+..|...|+.+.. ..+..  
T Consensus        94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~-~~~~~--  170 (493)
T 2uy1_A           94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQP-LIRGW--  170 (493)
T ss_dssp             HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTC--
T ss_pred             HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHH-HHhhc--
Confidence            654    346778888889998885333322 2221111111             11122223333332221 00000  


Q ss_pred             HHHHHHHHHHHhHHHHH-------hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048          369 KAKSLQAHLNKCTDAKR-------TRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE  441 (608)
Q Consensus       369 ~~~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  441 (608)
                         ....|......-..       .+........|++++...|.. +.+|...+..+...|+.++|...|++++.. |.+
T Consensus       171 ---s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~  245 (493)
T 2uy1_A          171 ---SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG  245 (493)
T ss_dssp             ---SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred             ---cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence               00011111111110       011333445555555555544 455555555555556666666666655555 543


Q ss_pred             cccccC------------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048          442 TTRFFG------------------------------PIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV  491 (608)
Q Consensus       442 ~~~~~~------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  491 (608)
                      ..-++.                              ......+|...+....+.++.+.|...|+++ ...+.....+. 
T Consensus       246 ~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i-  323 (493)
T 2uy1_A          246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFI-  323 (493)
T ss_dssp             SHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHH-
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHH-
Confidence            211100                              0001356777777777788899999999999 43222333332 


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048          492 MRKAKGVAAARSNGNALFKQA-KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL  570 (608)
Q Consensus       492 l~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  570 (608)
                                 ..|.+....+ +.+.|..+|+.+++..|+.+..|...+......|+.+.|...|+++    +.....|.
T Consensus       324 -----------~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~  388 (493)
T 2uy1_A          324 -----------YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWD  388 (493)
T ss_dssp             -----------HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHH
T ss_pred             -----------HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHH
Confidence                       4455555555 6999999999999999999998888888889999999999999998    34677888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          571 RRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       571 ~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      .....-...|+.+.+...+++++.
T Consensus       389 ~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          389 SMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888888888999999999999986

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.05  E-value=1.2e-09  Score=91.68  Aligned_cols=99  Identities=13%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 040048          470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFE  549 (608)
Q Consensus       470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  549 (608)
                      +|+..|+++++.+|++..++.            .+|.++...|++++|+.+|++++..+|.+..+|+.+|.++...|+++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRF------------TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence            578999999999999988876            89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcC
Q 040048          550 KAIEDCNAALNVRPG--YSKARLRRADCFAKIE  580 (608)
Q Consensus       550 ~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g  580 (608)
                      +|+..|++++++.|.  +..+...+...+..++
T Consensus        71 ~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           71 GARQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            999999999998874  4455555555554444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.04  E-value=2.9e-10  Score=92.57  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=83.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV-LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE  580 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g  580 (608)
                      +.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+.+|+++++++|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            37899999999999999999999999999999 99999999999999999999999999999999988754        6


Q ss_pred             CHHHHHHHHHHHHHhCCCCH
Q 040048          581 KWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       581 ~~~~A~~~~~~al~l~P~~~  600 (608)
                      .+.+++..|++++..+|++.
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            78889999999998888764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=5.1e-10  Score=91.66  Aligned_cols=72  Identities=13%  Similarity=0.179  Sum_probs=61.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          527 LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       527 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      .+|+++.+++.+|.++...|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            368888899999999999999999999999999999999899999999999999999999999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.00  E-value=2e-09  Score=114.10  Aligned_cols=139  Identities=10%  Similarity=0.077  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--
Q 040048          455 LVVRAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--  527 (608)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--  527 (608)
                      ....+..+..+|+|++|+.++++++++     .++++....         ++.++|.+|..+|+|++|+.++++++++  
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~---------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~  382 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR---------LLSIASEVLSYLQAYEEASHYARRMVDGYM  382 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            344555677899999999999999984     466666543         4579999999999999999999999975  


Q ss_pred             ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          528 ---DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYS---KARLRRADCFAKIEKWEASMQDYEILK  593 (608)
Q Consensus       528 ---~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al  593 (608)
                         .|++   +..+++||.+|..+|++++|+.+|++|+++     .|+++   +....++.++..++.+++|...|.++.
T Consensus       383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3444   568899999999999999999999999985     56665   456789999999999999999999998


Q ss_pred             HhCCCCHHH
Q 040048          594 KEAPDDEEV  602 (608)
Q Consensus       594 ~l~P~~~~~  602 (608)
                      +..-++..+
T Consensus       463 ~~~~~~~~~  471 (490)
T 3n71_A          463 EAALNNQPM  471 (490)
T ss_dssp             HHHHTC---
T ss_pred             HHHhcCCCC
Confidence            755444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.97  E-value=2.9e-09  Score=87.09  Aligned_cols=86  Identities=21%  Similarity=0.243  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH--YHRAHHR  337 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~  337 (608)
                      .|.++.+++.+|.+++..|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999988654  3444444


Q ss_pred             HHHHHHHc
Q 040048          338 LANLYLRL  345 (608)
Q Consensus       338 la~~~~~~  345 (608)
                      +..++...
T Consensus        83 l~~~l~~~   90 (100)
T 3ma5_A           83 LQDAKLKA   90 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            55444433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.97  E-value=9.4e-10  Score=89.51  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKAS-YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      .+.+|..++..|++++|+.+|+++++.+|+++. +++.+|.+|..+|++++|+.+|+++++++|++..++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            357899999999999999999999999999999 99999999999999999999999999999999888744        


Q ss_pred             CCHHHHHHHHHHhCCCCCch
Q 040048          346 GEVEKAIYHFKHAGPEADQV  365 (608)
Q Consensus       346 g~~~~A~~~~~~al~~~~p~  365 (608)
                      +.+.+++..|++++. .+|+
T Consensus        75 ~~~~~a~~~~~~~~~-~~p~   93 (99)
T 2kc7_A           75 KMVMDILNFYNKDMY-NQLE   93 (99)
T ss_dssp             HHHHHHHHHHCCTTH-HHHC
T ss_pred             HHHHHHHHHHHHHhc-cCcc
Confidence            567788888887765 4443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.88  E-value=4.3e-08  Score=85.32  Aligned_cols=119  Identities=10%  Similarity=-0.060  Sum_probs=104.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-
Q 040048          466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK-  544 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-  544 (608)
                      +++++|+.+|+++.+.....  +             . +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~--a-------------~-lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF--G-------------C-LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT--H-------------H-HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcCCCHh--h-------------h-HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC
Confidence            47899999999999876332  2             1 688899999999999999999987  689999999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          545 ---LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       545 ---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                         .+++++|+.+|+++.+.  .++.++++||.+|..    .+++++|+.+|+++.+.  .++++...|
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l  135 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL  135 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred             CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence               89999999999999987  689999999999999    99999999999999998  455555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.84  E-value=7.5e-08  Score=96.34  Aligned_cols=137  Identities=10%  Similarity=-0.007  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---cC----CHHHHH-HH
Q 040048          452 ANLLVVRAQVNLACGR---FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK---QA----KFSEAA-AA  520 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---~g----~~~eA~-~~  520 (608)
                      +.-++..|..++..+.   +.+|+.+|+++++++|+...++..            ++.++..   .+    ...+++ ..
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~------------la~a~~~~~~~~~~~~~~~~~l~~a  263 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE------------KALVDIVRHSQHPLDEKQLAALNTE  263 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHHhccCCCchhhHHHHHHH
Confidence            4445556666666544   589999999999999999988863            3333321   11    011111 12


Q ss_pred             HH--HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048          521 YG--DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       521 ~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~  598 (608)
                      ++  .++..+|.++.++..++..+...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|.
T Consensus       264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            22  244667999999999999999999999999999999999975 778899999999999999999999999999998


Q ss_pred             CHH
Q 040048          599 DEE  601 (608)
Q Consensus       599 ~~~  601 (608)
                      .+.
T Consensus       343 ~~t  345 (372)
T 3ly7_A          343 ANT  345 (372)
T ss_dssp             HHH
T ss_pred             cCh
Confidence            864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.82  E-value=7.9e-09  Score=109.52  Aligned_cols=93  Identities=15%  Similarity=0.021  Sum_probs=78.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---
Q 040048          268 KIMGNEDYKAGNFAEALALYDAAISI-----DPNK---ASYRSNKTAALIALGRLLEAVFECREAIRI-----EPHY---  331 (608)
Q Consensus       268 ~~lg~~~~~~g~~~~Al~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---  331 (608)
                      ...+..+..+|+|++|+.+|++++++     .|++   ...+.++|.+|..+|+|++|+.++++++++     .|++   
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34555677899999999999999985     3444   456899999999999999999999999975     4555   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048          332 HRAHHRLANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      ...+.+||.+|..+|++++|+..|++++.
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999998865

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.72  E-value=7.3e-08  Score=83.85  Aligned_cols=120  Identities=13%  Similarity=-0.003  Sum_probs=97.5

Q ss_pred             ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048          423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR  502 (608)
Q Consensus       423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  502 (608)
                      ++++|+.+|+++.+...            +.+.  +|.+|...+.+++|+.+|+++.+.  .++.+..            
T Consensus        10 d~~~A~~~~~~aa~~g~------------~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~------------   61 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE------------MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCR------------   61 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC------------TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHH------------
T ss_pred             CHHHHHHHHHHHHcCCC------------Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHH------------
Confidence            45666666666655432            3344  999999999999999999999886  5556554            


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048          503 SNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYSKARLRRAD  574 (608)
Q Consensus       503 ~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~  574 (608)
                      .+|.+|..    .+++++|+.+|+++.+.  .++.++++||.+|..    .+++++|+.+|+++.+.  .++.+...|+.
T Consensus        62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A           62 FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence            89999999    89999999999999987  679999999999999    99999999999999987  45666665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.64  E-value=4.8e-07  Score=86.82  Aligned_cols=101  Identities=13%  Similarity=-0.036  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHc-----CC
Q 040048          452 ANLLVVRAQVNLA-----CG------RFEDALAAIQKAAKQDSNN--KEVNMVMRKAKGVAAARSNGNALFKQ-----AK  513 (608)
Q Consensus       452 ~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~lg~~~~~~-----g~  513 (608)
                      +++++..|.+...     .|      ....|...++++++++|+.  ..++.            .+|.+|...     |+
T Consensus       152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~------------~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWN------------VLTKFYAAAPESFGGG  219 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHH------------HHHHHHHHSCTTTTCC
T ss_pred             cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHH------------HHHHHHHhCCCccCCC
Confidence            6666666665532     23      2578999999999999994  44554            889999995     99


Q ss_pred             HHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 040048          514 FSEAAAAYGDGLGLDPYN-SVLLCNRAACRSK-LGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       514 ~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~  564 (608)
                      .++|.++|+++++++|+. ...++..|..+.. .|++++|..++++++...|.
T Consensus       220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999999999999975 9999999999988 59999999999999998776

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.64  E-value=1.6e-07  Score=75.28  Aligned_cols=72  Identities=13%  Similarity=0.084  Sum_probs=67.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          528 DPYNSVLLCNRAACRSKLGQ---FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                      +|+++.++..+|.+++..++   .++|...++++++++|+++.+++.+|.++++.|+|++|+.+|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            58899999999999987766   7999999999999999999999999999999999999999999999999984

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.64  E-value=1.6e-07  Score=81.43  Aligned_cols=93  Identities=10%  Similarity=0.064  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          513 KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG---QFEKAIEDCNAALNVR-P-GYSKARLRRADCFAKIEKWEASMQ  587 (608)
Q Consensus       513 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~  587 (608)
                      ....+.+.|.+.+..++.+..+.+++|+++.+.+   ++++++..++.+++.+ | +..+++|.+|..|+++|+|++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3456778888888888899999999999999988   6779999999999998 7 568999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHH
Q 040048          588 DYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       588 ~~~~al~l~P~~~~~~~~  605 (608)
                      +++++++++|+|.++...
T Consensus        93 y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHH
Confidence            999999999999988765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.59  E-value=1.5e-07  Score=94.22  Aligned_cols=136  Identities=11%  Similarity=-0.053  Sum_probs=103.3

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH-------HHHHH-HHH--HHHhhCC
Q 040048          263 DPETLKIMGNEDYKAGN---FAEALALYDAAISIDPNKASYRSNKTAALIALGRL-------LEAVF-ECR--EAIRIEP  329 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~eA~~-~~~--~al~~~p  329 (608)
                      ++-.++..|..++..++   +.+|+.+|++|++++|+++.++..++.+|.....+       .+++. .++  .++..+|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            45557778888877654   57899999999999999999999888888632111       11111 111  2335678


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048          330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS  406 (608)
Q Consensus       330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  406 (608)
                      ..+.++..++..+...|++++|+..+++++. ++|+       ...+..+|.++...|++++|++.|.+++.++|..
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln~s-------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMS-------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            8899999999999889999999999999998 7754       3456777888888888888888888888888865

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.58  E-value=2.7e-07  Score=73.91  Aligned_cols=71  Identities=14%  Similarity=0.056  Sum_probs=50.1

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040048          261 RMDPETLKIMGNEDYKAGN---FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY  331 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~  331 (608)
                      |.+++.+..+|.+++..++   .++|..+|++++.++|+++.+++.+|..++..|+|++|+.+++++++.+|..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            5667777777777765554   5777777777777777777777777777777777777777777777776663

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.57  E-value=3.9e-07  Score=87.46  Aligned_cols=86  Identities=12%  Similarity=0.063  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHH
Q 040048          513 KFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKL-----GQFEKAIEDCNAALNVRPGY-SKARLRRADCFAK-IEKWE  583 (608)
Q Consensus       513 ~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~-~g~~~  583 (608)
                      ...+|...++++++++|+  +..+|..+|.+|...     |+.++|.++|++|++++|+. ..+++.+|..+.. +|+++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            357899999999999999  677999999999995     99999999999999999975 9999999999988 59999


Q ss_pred             HHHHHHHHHHHhCCC
Q 040048          584 ASMQDYEILKKEAPD  598 (608)
Q Consensus       584 ~A~~~~~~al~l~P~  598 (608)
                      +|..++++++..+|.
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            999999999998876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.55  E-value=6.9e-07  Score=73.35  Aligned_cols=78  Identities=18%  Similarity=0.249  Sum_probs=70.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISID-------PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA  334 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  334 (608)
                      ..++..+.+|..++..|+|..|+.+|++|++..       +..+.++..+|.++..+|++++|+.+++++++++|++..+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            467888999999999999999999999999863       3456789999999999999999999999999999999988


Q ss_pred             HHHHH
Q 040048          335 HHRLA  339 (608)
Q Consensus       335 ~~~la  339 (608)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            87776

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.48  E-value=1e-06  Score=72.36  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048          499 AAARSNGNALFKQAKFSEAAAAYGDGLGLD-------PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR  571 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  571 (608)
                      ...+.+|..++..|+|..|+.+|++|+...       +....++..+|.++.++|++++|+.++++++++.|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            445678888888888888888888888752       2346778888888888888888888888888888888877777


Q ss_pred             HH
Q 040048          572 RA  573 (608)
Q Consensus       572 la  573 (608)
                      ++
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.48  E-value=4.9e-07  Score=94.17  Aligned_cols=99  Identities=9%  Similarity=-0.012  Sum_probs=83.5

Q ss_pred             HHHHHcCCHHHHHHHHHHhhcC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGL-----DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGY---SKAR  569 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~  569 (608)
                      ......|+|++|+..|++++++     .|++   ...+.++|.+|..+|+|++|+.++++++++     .|++   ...+
T Consensus       306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  385 (433)
T 3qww_A          306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW  385 (433)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            3334578999999999999974     4555   467889999999999999999999999985     4555   4678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 040048          570 LRRADCFAKIEKWEASMQDYEILKKE-----APDDEEVDQ  604 (608)
Q Consensus       570 ~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~  604 (608)
                      .+||.+|..+|++++|+.+|++|+++     .|+++.+..
T Consensus       386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            99999999999999999999999985     688877654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.40  E-value=2.2e-06  Score=74.37  Aligned_cols=97  Identities=13%  Similarity=0.075  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCC-C-CCHHHHHHHHHHH
Q 040048          468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA---KFSEAAAAYGDGLGLD-P-YNSVLLCNRAACR  542 (608)
Q Consensus       468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~-p-~~~~~~~~la~~~  542 (608)
                      ...+...|.+.+..++.+.++.+            .+|.++.+.+   +.++++.+++.+++.+ | ...++++++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F------------~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~   81 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   81 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHH------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence            45677788888888887777775            8999999988   6779999999999998 6 5689999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                      +++|+|++|+++++++++++|++..+...+-.+-
T Consensus        82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999988776554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.40  E-value=1.4e-06  Score=90.90  Aligned_cols=103  Identities=10%  Similarity=0.036  Sum_probs=86.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---H
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGL-----DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGY---S  566 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~  566 (608)
                      ....-+..+|+|++|+..|++++++     .|++   ..++.++|.+|..+|+|++|+.++++++.+     .|++   .
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            3344566789999999999999975     3444   467889999999999999999999999985     3555   4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 040048          567 KARLRRADCFAKIEKWEASMQDYEILKKE-----APDDEEVDQA  605 (608)
Q Consensus       567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~  605 (608)
                      ..+++||.+|..+|++++|+.+|++|+++     -|+++.+...
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            57899999999999999999999999974     7888877654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.40  E-value=2.4e-06  Score=88.91  Aligned_cols=98  Identities=6%  Similarity=-0.060  Sum_probs=82.4

Q ss_pred             HHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----CCCC-
Q 040048          463 LACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-----DPYN-  531 (608)
Q Consensus       463 ~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~-  531 (608)
                      ...|+|++|+..+++++++     .|+++....         ++.++|.+|..+|+|++|+.++++++++     .|++ 
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~---------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLH---------MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHH---------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            3468999999999999984     567776643         4579999999999999999999999975     3444 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHH
Q 040048          532 --SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYSKAR  569 (608)
Q Consensus       532 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~  569 (608)
                        +..+++||.+|..+|++++|+.+|++|+++     .|+++.+.
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence              568899999999999999999999999985     57776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.37  E-value=1.7e-06  Score=90.29  Aligned_cols=112  Identities=16%  Similarity=0.068  Sum_probs=89.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-----  527 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----  527 (608)
                      ...-+...|++++|+..+++++++     .++++....         ++.++|.+|..+|+|++|+.++++++.+     
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~---------~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l  363 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLK---------VLDCAMDACINLGLLEEALFYGTRTMEPYRIFF  363 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence            344456789999999999999974     466665543         4579999999999999999999999975     


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHHHH
Q 040048          528 DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYSKA---RLRRADCFAK  578 (608)
Q Consensus       528 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a---~~~la~~~~~  578 (608)
                      .|++   +..+++||.+|..+|++++|+.+|++|+++     .|+++..   +.+|+.+...
T Consensus       364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            3444   568899999999999999999999999985     5777644   4556665544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.09  E-value=0.00018  Score=76.56  Aligned_cols=162  Identities=7%  Similarity=-0.072  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHhhcCCCC--CCcccccccCCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHH
Q 040048          410 IYALQAEALLKLHKHQEADETLKNGPNF--DVDETTRFFGPIGNANLLVVRAQVNLACG---------RFEDALAAIQKA  478 (608)
Q Consensus       410 ~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a  478 (608)
                      ++..+-..+.+.|++++|+.+|+++.+.  .|+           ...|..+-.++...+         ..++|...|++.
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-----------~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M   96 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-----------QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM   96 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-----------HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence            3444556677788888888887766542  232           556665555555433         378899999988


Q ss_pred             HHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          479 AKQD--SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-PYNSVLLCNRAACRSKLGQFEKAIEDC  555 (608)
Q Consensus       479 l~~~--p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~  555 (608)
                      ....  |+ ...+            ..+...|.+.|++++|..+|++..... ..+...|..+-..|.+.|+.++|.+.|
T Consensus        97 ~~~G~~Pd-~~ty------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           97 IVDKVVPN-EATF------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHTTCCCC-HHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCCCCC-HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            7643  33 2222            367789999999999999999988752 336888999999999999999999999


Q ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          556 NAALNVR-PGYSKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       556 ~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      ++..+.. .-+...|..+-.+|.+.|+.++|.++|++..+.
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            9998753 225678999999999999999999999998774

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.05  E-value=0.00017  Score=76.71  Aligned_cols=166  Identities=16%  Similarity=0.019  Sum_probs=131.9

Q ss_pred             CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhC-C
Q 040048          263 DPET-LKIMGNEDYKAGNFAEALALYDAAISI--DPNKASYRSNKTAALIALG---------RLLEAVFECREAIRIE-P  329 (608)
Q Consensus       263 ~~~~-~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g---------~~~eA~~~~~~al~~~-p  329 (608)
                      .|+. +..+-..+.+.|++++|+.+|+++.+.  .|+ ...|..+-.++...+         ..++|...|+++.... .
T Consensus        24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~  102 (501)
T 4g26_A           24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV  102 (501)
T ss_dssp             CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence            3554 455567788999999999999998875  343 455666655665443         3788999999987743 2


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC-CCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 040048          330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE-ADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP  408 (608)
Q Consensus       330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  408 (608)
                      -+...|..+...|.+.|++++|+..|++.... +.|+       ...|..+...+.+.|++++|...++++.+.+-....
T Consensus       103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A          103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence            25778999999999999999999999987541 4454       355667777888999999999999999998777777


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPN  436 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~  436 (608)
                      ..|..+...+.+.|++++|..+|++.-+
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            8999999999999999999999988753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.95  E-value=4.1e-05  Score=63.82  Aligned_cols=95  Identities=8%  Similarity=0.035  Sum_probs=80.4

Q ss_pred             cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHH
Q 040048          511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK---AIEDCNAALNVR-P-GYSKARLRRADCFAKIEKWEAS  585 (608)
Q Consensus       511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A  585 (608)
                      ......+...|.+.+..++....+.+++|+++.+..+...   ++..++..+... | ..-+.++.||..++++|+|++|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3445566777777777777889999999999999887766   999999988876 4 4568899999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q 040048          586 MQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       586 ~~~~~~al~l~P~~~~~~~~  605 (608)
                      +.+++.++++.|+|.++...
T Consensus        94 ~~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999987653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.80  E-value=0.0003  Score=58.61  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHhhcCC-C-CCHHHHHHHHH
Q 040048          466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE---AAAAYGDGLGLD-P-YNSVLLCNRAA  540 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~la~  540 (608)
                      .....+...|.+.+..++......+            .+|+++.+..+..+   ++.+++..+..+ | ..-+.++.+|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F------------~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv   82 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   82 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            3455667778878777777777665            88999999887776   999999999986 4 45689999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          541 CRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                      .++++|+|++|+.+++.+|++.|++..+......+
T Consensus        83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999998877655444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.78  E-value=0.00025  Score=60.34  Aligned_cols=112  Identities=13%  Similarity=-0.020  Sum_probs=91.5

Q ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcCCCCC--------HHHHHHHHHHHHHc
Q 040048          480 KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF------SEAAAAYGDGLGLDPYN--------SVLLCNRAACRSKL  545 (608)
Q Consensus       480 ~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~------~eA~~~~~~al~~~p~~--------~~~~~~la~~~~~~  545 (608)
                      -+.|.+++.|.            .......+.|+.      ++-++.|++|+..-|..        ..+|...|.. ...
T Consensus         7 ~~~p~~yd~W~------------~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei   73 (161)
T 4h7y_A            7 MMMANNPEDWL------------SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI   73 (161)
T ss_dssp             ---CCSHHHHH------------HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred             eeCCCCHHHHH------------HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence            35788888876            455666666888      88889999999875532        4566666655 567


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       546 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      ++.++|.+.|+.++.+...++.+|...|..-.++|+...|.+.+.+++.+.|...+...
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            99999999999999998889999999999999999999999999999999999887654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.50  E-value=0.00031  Score=61.21  Aligned_cols=135  Identities=12%  Similarity=0.062  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHH
Q 040048          300 YRSNKTAALIALGRLLEAVFECREAIRIE---PHY------HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA  370 (608)
Q Consensus       300 ~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~  370 (608)
                      +++.-...++..|.|+.|+.....++.+.   |+-      ..++..+|.+++..++|..|...|++++. ....-... 
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq-~~k~l~k~-   99 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ-QKKALSKT-   99 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHCC----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHHhcC-
Confidence            34444555666666666666666655442   221      23667777777777777777777777654 10000000 


Q ss_pred             HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048          371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIG  450 (608)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~  450 (608)
                      .....  ..+.    .       .......  +-....++.+.++.||.+++++++|+..++.+......          
T Consensus       100 ~s~~~--~~~~----~-------ss~p~s~--~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt----------  154 (167)
T 3ffl_A          100 SKVRP--STGN----S-------ASTPQSQ--CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT----------  154 (167)
T ss_dssp             --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC----------
T ss_pred             CCccc--cccc----c-------CCCcccc--cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC----------
Confidence            00000  0000    0       0000000  11123578899999999999999999999998765443          


Q ss_pred             cHHHHHHHHHHH
Q 040048          451 NANLLVVRAQVN  462 (608)
Q Consensus       451 ~~~~~~~la~~~  462 (608)
                       +.+...+|.+|
T Consensus       155 -~kvnm~LakLy  165 (167)
T 3ffl_A          155 -PKINMLLANLY  165 (167)
T ss_dssp             -HHHHHHHHHHC
T ss_pred             -HHHHHHHHHHh
Confidence             77788888775

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.46  E-value=0.0014  Score=55.75  Aligned_cols=107  Identities=18%  Similarity=0.069  Sum_probs=91.0

Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048          258 LSTRMDPETLKIMGNEDYKAGNF------AEALALYDAAISIDPNK--------ASYRSNKTAALIALGRLLEAVFECRE  323 (608)
Q Consensus       258 ~~~~~~~~~~~~lg~~~~~~g~~------~~Al~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~eA~~~~~~  323 (608)
                      +..|.+++.|..........|+.      ++-++.|++|+..-|-.        ...|...|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            45689999999999999989999      89999999999876653        2346666644 567999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          324 AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       324 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      ++.+....+.+|...|..-.++|+...|.+.+.+++. ..|..
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~  127 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVP  127 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBC
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCc
Confidence            9999888899999999999999999999999999998 77765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.41  E-value=0.0011  Score=57.85  Aligned_cols=97  Identities=14%  Similarity=0.059  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---------SYRSNKTAALIALGRLLEAVFECREAIRIE---P  329 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p  329 (608)
                      ..-.+++.....++..|.|+.|+-....++.+..++.         .++..+|.+++..|+|..|...|+++|...   +
T Consensus        18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~   97 (167)
T 3ffl_A           18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS   97 (167)
T ss_dssp             ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence            3445677888899999999999999999877643333         378999999999999999999999987641   1


Q ss_pred             C----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048          330 H----------------------YHRAHHRLANLYLRLGEVEKAIYHFKHA  358 (608)
Q Consensus       330 ~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a  358 (608)
                      .                      +.++.+.++.||..++++++|+..++.+
T Consensus        98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            1                      1268899999999999999999998864

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.15  E-value=0.0052  Score=51.99  Aligned_cols=76  Identities=8%  Similarity=-0.050  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          529 PYNSVLLCNRAACRSKLGQF---EKAIEDCNAALNVRPG-YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       529 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      .....+.+++|+++.+..+.   .+++..++..+...|. .-+.++.||..++++|+|++|..+.+.++++.|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45688999999999987754   5789999999988885 4678899999999999999999999999999999988764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.14  E-value=0.0036  Score=52.24  Aligned_cols=75  Identities=8%  Similarity=-0.051  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048          530 YNSVLLCNRAACRSKLGQF---EKAIEDCNAALNVRPG-YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ  604 (608)
Q Consensus       530 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  604 (608)
                      -.+.+.+++|+++.+..+.   .+++..++..+...|. .-+.++.+|..+.++|+|++|..+.+.++++.|+|.++..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            3577888888888887654   4688888888887774 4677888888888888888888888888888888887754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.00  E-value=0.0065  Score=50.72  Aligned_cols=80  Identities=8%  Similarity=-0.092  Sum_probs=64.5

Q ss_pred             CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNF---AEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR  337 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  337 (608)
                      ..+++-+.+|.++.+..+.   .+++.+++..+..+|. .-+.++.+|..++++|+|++|..+.+.++++.|++..+...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            5788889999888877654   4688899888888874 46788899999999999999999999999999998776554


Q ss_pred             HHHH
Q 040048          338 LANL  341 (608)
Q Consensus       338 la~~  341 (608)
                      ...+
T Consensus       118 k~~I  121 (134)
T 3o48_A          118 KSMV  121 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.96  E-value=0.011  Score=49.94  Aligned_cols=80  Identities=8%  Similarity=-0.100  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048          261 RMDPETLKIMGNEDYKAGNF---AEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH  336 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  336 (608)
                      ...+++-+.+|.++.+..+-   .+++.+++..+...|. .-+.++.+|..++++|+|.+|..+++.+|++.|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            46788889999888877654   4688899998888874 4568888999999999999999999999999998877655


Q ss_pred             HHHH
Q 040048          337 RLAN  340 (608)
Q Consensus       337 ~la~  340 (608)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.0074  Score=66.40  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=87.7

Q ss_pred             HcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--------CCCCC---
Q 040048          464 ACGR-FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG--------LDPYN---  531 (608)
Q Consensus       464 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--------~~p~~---  531 (608)
                      ..++ ++.|+..+++....+|.........          .++.......+--+|+..+.++++        ..+.+   
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~----------~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTA----------MITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHHHHH----------HHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHHHHH----------HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            3555 6889999999999988765433211          112221222345567777777663        22222   


Q ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          532 -------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       532 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                             ..++...+..+...|+|+-|+++.++|+...|+....|+.|+.+|..+|+|+.|+-.+..+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                   3456667888899999999999999999999999999999999999999999999776654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.70  E-value=0.063  Score=46.39  Aligned_cols=182  Identities=12%  Similarity=0.038  Sum_probs=114.0

Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--h---
Q 040048          253 SLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR--I---  327 (608)
Q Consensus       253 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~---  327 (608)
                      .+..+.+.+..++.-..++..++-.|+|..++-.+..     -+...+.+..+.||..+.+|..|+.+++..++  +   
T Consensus        22 ~fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d   96 (242)
T 3kae_A           22 IFLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERD   96 (242)
T ss_dssp             HHHHHHHC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCC
T ss_pred             HHHHHHHccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            3445556677778888899999999999999877643     34577888899999999999999999999993  2   


Q ss_pred             ------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHH-----------HHHHHhHHH
Q 040048          328 ------------EPHYHR-AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ-----------AHLNKCTDA  383 (608)
Q Consensus       328 ------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~-----------~~~~~~~~~  383 (608)
                                  +|.+.+ .+..+|.++...|+.++|+.+|..... ..+-.......+.           .....+..-
T Consensus        97 ~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~-~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~  175 (242)
T 3kae_A           97 PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG-KSFLFSPVENLLLENKVPQKRDKENVRQTGRRG  175 (242)
T ss_dssp             CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHTTCCCCCC-----------C
T ss_pred             cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC-CccccchHHHHHhhcCCCcccchHHHHhhhhcc
Confidence                        233333 566789999999999999999987644 3322211100000           000000000


Q ss_pred             HHhhcHHHHH--------HHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048          384 KRTRDWNTLI--------QETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD  440 (608)
Q Consensus       384 ~~~~~~~~A~--------~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  440 (608)
                      .....+....        ...++-.+.-|....-.....+..|+.+|..++...+|...-+.+|.
T Consensus       176 i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          176 IEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             chhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence            0001111111        12223333345555556667788899999999999998877666654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.57  E-value=0.075  Score=53.85  Aligned_cols=177  Identities=13%  Similarity=-0.019  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChH
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA-CGRFEDALAAIQKAAKQDSNNKE  487 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~  487 (608)
                      .+...+|.+|...|++++-.+++.......+......     .+.+...+-..+.. -+..+.-++.+.++++-..+...
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak-----~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r   94 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAK-----AAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR   94 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888899998888888877765433321110     12222233333322 24455556666666654433322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YN----SVLLCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                      .|...      ..-..+|..|+..|+|.+|+..+.+......  ++    .+++.....+|..++++.++...+.++...
T Consensus        95 ~flr~------~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           95 TFLRQ------SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            22100      0012789999999999999999988876422  11    456778888999999999999999999765


Q ss_pred             C---CCC----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 040048          562 R---PGY----SKARLRRADCFA-KIEKWEASMQDYEILKKEA  596 (608)
Q Consensus       562 ~---p~~----~~a~~~la~~~~-~~g~~~~A~~~~~~al~l~  596 (608)
                      .   +.+    +.....-|..+. ..++|.+|..+|-.+++-.
T Consensus       169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          169 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            3   122    344566788889 8999999999999987543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.54  E-value=0.5  Score=50.99  Aligned_cols=127  Identities=14%  Similarity=-0.014  Sum_probs=64.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 040048          459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNR  538 (608)
Q Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l  538 (608)
                      +.......+.+.|...+........-+......+        ...++..+...+...++...+.+......+ ......+
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~  291 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQEL--------RDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERR  291 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHH--------HHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHH--------HHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHH
Confidence            3334444466666666665544333222222111        112333333344344555555554443332 2223333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       539 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      +...+..|+++.|...|++.-..........|.+|.++..+|+.++|..+|+++.+
T Consensus       292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            33344557777777766654443334466667777777777777777777776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.53  E-value=0.15  Score=57.20  Aligned_cols=70  Identities=14%  Similarity=0.039  Sum_probs=38.6

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          272 NEDYKAGNFAEALA-LYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK  350 (608)
Q Consensus       272 ~~~~~~g~~~~Al~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  350 (608)
                      ......+++++|.. ++.    .-|+ ...+..+...+...|.+++|+...+        ++...   ..+....|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence            34456788888866 441    1110 1122555666677777777775542        22222   233456777777


Q ss_pred             HHHHHHH
Q 040048          351 AIYHFKH  357 (608)
Q Consensus       351 A~~~~~~  357 (608)
                      |.+..+.
T Consensus       671 A~~~~~~  677 (814)
T 3mkq_A          671 ARDLLTD  677 (814)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            7776544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.49  E-value=0.093  Score=53.17  Aligned_cols=171  Identities=11%  Similarity=0.020  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHH----
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY-----RSNKTAALIA-LGRLLEAVFECREAIRIEPHYHR----  333 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~-----~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~----  333 (608)
                      -.+.+.+|..|...|++++-..++......-+.-+.+     ...+-..+.. -+..+.-++.+..+++...+.-.    
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999988765544333322     2222222222 35556666777777653322211    


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC----C--C
Q 040048          334 --AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG----A--D  405 (608)
Q Consensus       334 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~--~  405 (608)
                        .-..+|.+|+..|+|.+|...+.+.+.++...+ .....++.+......+...+++.++...+.++....    +  .
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence              234789999999999999999888765222211 135567888888889999999999999988876432    2  2


Q ss_pred             ChHHHHHHHHHHHH-HcCChHHHHHHhhcCC
Q 040048          406 SAPQIYALQAEALL-KLHKHQEADETLKNGP  435 (608)
Q Consensus       406 ~~~~~~~~la~~~~-~~g~~~eA~~~l~~al  435 (608)
                      ....+...-|.++. ..++|.+|...|-+++
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            22345556688888 8999999998887765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.96  E-value=0.71  Score=39.96  Aligned_cols=183  Identities=14%  Similarity=0.097  Sum_probs=118.9

Q ss_pred             HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048          385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA  464 (608)
Q Consensus       385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~  464 (608)
                      +-.+|+.++-...-.....|    +...+++.++.-.|++..++-.+...-.               ....+..+.+|..
T Consensus        14 kY~dYdt~~fLsa~L~~~~~----eY~lL~~I~LyyngEY~R~Lf~L~~lNT---------------~Ts~YYk~LCy~k   74 (242)
T 3kae_A           14 RYRDYETAIFLAACLLPCKP----EYRMLMSIVLYLNGEYTRALFHLHKLNT---------------CTSKYYESLCYKK   74 (242)
T ss_dssp             HTTCHHHHHHHHHHHC--------CTHHHHHHHHHHTTCHHHHHHHHHTCCB---------------HHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHccCCh----HHHhhhhhhhhhcchHhHHHHHHHhcch---------------HHHHHHHHHHHHH
Confidence            34566666543333322222    4556778889999999999998876532               7777888999999


Q ss_pred             cCCHHHHHHHHHHHHH--h---------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          465 CGRFEDALAAIQKAAK--Q---------------DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       465 ~g~~~~A~~~~~~al~--~---------------~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      .++|..|+..++..+.  .               +|.+.+...           ..+|.++...|+.+||+.+|......
T Consensus        75 lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy-----------~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A           75 KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE-----------SLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH-----------HHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            9999999999999993  2               234444433           47899999999999999999998877


Q ss_pred             CCCCHHHHHHHHH-----------HHHHcCC-------HHHHH--------HHHHHHHhcCCCCHHHH-HHHHHHHHHcC
Q 040048          528 DPYNSVLLCNRAA-----------CRSKLGQ-------FEKAI--------EDCNAALNVRPGYSKAR-LRRADCFAKIE  580 (608)
Q Consensus       528 ~p~~~~~~~~la~-----------~~~~~g~-------~~~A~--------~~~~~al~~~p~~~~a~-~~la~~~~~~g  580 (608)
                      .|-.+.+-+.+-.           +. ..|+       +....        ...++-...-|.....+ ...+..|+.+|
T Consensus       144 ~~lf~~vEnliyeN~vp~~~d~~~i~-~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg  222 (242)
T 3kae_A          144 SFLFSPVENLLLENKVPQKRDKENVR-QTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLG  222 (242)
T ss_dssp             CCCHHHHHHHHHTTCCCCCC------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHhhcCCCcccchHHHH-hhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcc
Confidence            6643222111000           00 0000       00111        22223333345433222 35677899999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 040048          581 KWEASMQDYEILKKEAPD  598 (608)
Q Consensus       581 ~~~~A~~~~~~al~l~P~  598 (608)
                      -.++...+|....+.+|.
T Consensus       223 ~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          223 MNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             CHHHHHHHHHHHHHHSTT
T ss_pred             cchhHHHHHHHHHhcCCC
Confidence            999999999999999996

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.71  Score=40.73  Aligned_cols=22  Identities=9%  Similarity=0.083  Sum_probs=14.3

Q ss_pred             HHHHHHcCChHHHHHHhhcCCC
Q 040048          415 AEALLKLHKHQEADETLKNGPN  436 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~  436 (608)
                      ..+++.+|++++++++|.+.-.
T Consensus        96 f~~~l~lGdv~~~i~lL~~~~r  117 (177)
T 3mkq_B           96 LLNTFYNNSTKERSSIFAEGGS  117 (177)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHCCC
Confidence            4556677777777777766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.92  E-value=0.13  Score=57.81  Aligned_cols=77  Identities=17%  Similarity=0.094  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      .+..+...+...|.+++|+...+        ++...   .......|++++|.+..+.     .++...|..+|..+...
T Consensus       631 ~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          631 SLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHc
Confidence            33445555566666666654331        11111   1222344555555544321     13344555555555555


Q ss_pred             CCHHHHHHHHHHh
Q 040048          346 GEVEKAIYHFKHA  358 (608)
Q Consensus       346 g~~~~A~~~~~~a  358 (608)
                      |+++.|+.+|.++
T Consensus       695 ~~~~~A~~~y~~~  707 (814)
T 3mkq_A          695 FNFKLAIEAFTNA  707 (814)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHc
Confidence            5555555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.76  E-value=0.16  Score=51.66  Aligned_cols=92  Identities=12%  Similarity=0.076  Sum_probs=76.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCC--------C--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPY--------N--------------SVLLCNRAACRSKLGQFEKAIEDCNAALN  560 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~  560 (608)
                      ..|......|+.++|...+.+|+.+...        .              ..+...++..+...|++++|+..+..++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3444455678899999999999886321        1              12344677888899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          561 VRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       561 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      .+|-+..+|..+-.+|...|+..+|+..|+++.+
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.1  Score=57.50  Aligned_cols=125  Identities=14%  Similarity=0.086  Sum_probs=84.7

Q ss_pred             cCC-hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCChHH
Q 040048          421 LHK-HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA---CGRFEDALAAIQKAAKQ--------DSNNKEV  488 (608)
Q Consensus       421 ~g~-~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~--------~p~~~~~  488 (608)
                      .++ ++.|+..+++....+|.           ..+++..+.+...   ..+--+|+..+.+.++.        .+.+...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~-----------~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPI-----------HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGG-----------GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCc-----------hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            344 46788888887776665           3344333333322   12344677777776642        2333222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA  558 (608)
Q Consensus       489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  558 (608)
                      ....  ......+...+..+...|+++-|+.+.++|+...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus       330 ~~~~--~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLM--NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccc--CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            1111  1112233456788889999999999999999999999999999999999999999999877765

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.52  E-value=0.15  Score=51.99  Aligned_cols=93  Identities=20%  Similarity=0.151  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAISIDPNK----------------------ASYRSNKTAALIALGRLLEAVFECREA  324 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~eA~~~~~~a  324 (608)
                      +...|......|+.+.|...+.+|+.+....                      ..+...++.++...|++.+|+..+.++
T Consensus       118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~  197 (388)
T 2ff4_A          118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL  197 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444555566799999999999999874321                      022345677788899999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048          325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG  359 (608)
Q Consensus       325 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  359 (608)
                      +..+|-+..+|..+..+|...|+..+|+..|+++.
T Consensus       198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999998763

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.35  Score=42.72  Aligned_cols=109  Identities=17%  Similarity=0.067  Sum_probs=68.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      .|++.-+.++   ...|+++.|.+..+..     ++...|..+|......|+++-|+.+|.++-.        +-.+..+
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~L   69 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFL   69 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHH
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHH
Confidence            4666666665   4679999998887764     5677899999999999999999999987632        2234445


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRA  398 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  398 (608)
                      |.-.|+.+.-...-+.+.. ..           .+......+..+|+++++++.|.+
T Consensus        70 y~~tg~~e~L~kla~iA~~-~g-----------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           70 YLVTGDVNKLSKMQNIAQT-RE-----------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHTCHHHHHHHHHHHHH-TT-----------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHH-Cc-----------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5556665554443333321 00           111223334555777777666543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.54  Score=48.73  Aligned_cols=172  Identities=11%  Similarity=0.084  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHhhcCCC----CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Q 040048          409 QIYALQAEALLKLHKHQEADETLKNGPN----FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK---Q  481 (608)
Q Consensus       409 ~~~~~la~~~~~~g~~~eA~~~l~~al~----~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~  481 (608)
                      .+...++.++...|++.+|...+.....    .....        ...+.+.....++...+++..|...+.++..   .
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~--------~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~  209 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS--------EKIQFILEQMELSILKGDYSQATVLSRKILKKTFK  209 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence            4567789999999999999888876532    11111        1378888999999999999999999998743   3


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCH---HHHHHHHHHHHHcCCH-HHHHHHH
Q 040048          482 DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YNS---VLLCNRAACRSKLGQF-EKAIEDC  555 (608)
Q Consensus       482 ~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~---~~~~~la~~~~~~g~~-~~A~~~~  555 (608)
                      .+..+....        ..+...|.++...++|.+|..+|..++....  .++   ......+.++.-+..+ ..--...
T Consensus       210 ~~~~~~lk~--------~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll  281 (445)
T 4b4t_P          210 NPKYESLKL--------EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLI  281 (445)
T ss_dssp             SSCCHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHH
T ss_pred             cCCcHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            344444332        2234788999999999999999999876421  122   1111222222222211 1111111


Q ss_pred             HHHHhcCCC--CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 040048          556 NAALNVRPG--YSKARLRRADCFAK--IEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       556 ~~al~~~p~--~~~a~~~la~~~~~--~g~~~~A~~~~~~al~l~P  597 (608)
                      .+... ++.  ...++..+..++..  ..+|+...+.|...+.-+|
T Consensus       282 ~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~  326 (445)
T 4b4t_P          282 HKIQN-DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD  326 (445)
T ss_dssp             HSHHH-HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred             HHHhh-cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence            11111 111  23456666666655  3567777777766665544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.48  Score=49.11  Aligned_cols=178  Identities=8%  Similarity=0.018  Sum_probs=107.1

Q ss_pred             HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH---HHHHHHcCChH--HHHHHhhcCCCCCCcccccccCCC
Q 040048          375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ---AEALLKLHKHQ--EADETLKNGPNFDVDETTRFFGPI  449 (608)
Q Consensus       375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l---a~~~~~~g~~~--eA~~~l~~al~~~p~~~~~~~~~~  449 (608)
                      ........+...++|+...+.+.-...........+-...   ...+......+  .-+...+........   ..+-..
T Consensus        58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~---kiflE~  134 (445)
T 4b4t_P           58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTEN---KIFVEV  134 (445)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSC---CCCCCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc---chHHHH
Confidence            3444556677778888887766554443332222111111   11112223222  222333322222111   111111


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---
Q 040048          450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG---  526 (608)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---  526 (608)
                      ..+.+...++.+|...|++.+|...+.....-.-...+      ....++.+.....++...++|..|...++++..   
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~  208 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME------MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF  208 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence            23677789999999999999999999988643221111      111244455788999999999999999998742   


Q ss_pred             CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          527 LDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       527 ~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                      ..+..    ...+...|.++...++|.+|-.+|..++..
T Consensus       209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            12222    346778899999999999999999998764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.23  E-value=0.25  Score=51.76  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR  344 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~  344 (608)
                      .+..+|....-...+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999999999999999999999999877788899888887754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.20  E-value=0.53  Score=53.06  Aligned_cols=97  Identities=7%  Similarity=-0.041  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGL----DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR-PGYSKARLRRAD  574 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~  574 (608)
                      .+..+-..|++.|+.++|..+|.+..+.    ..-+...|+.+-..|.+.|++++|++.|++..+.. .-+...|..+-.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            3457889999999999999999775432    23468999999999999999999999999998753 225778888888


Q ss_pred             HHHHcCC-HHHHHHHHHHHHHhC
Q 040048          575 CFAKIEK-WEASMQDYEILKKEA  596 (608)
Q Consensus       575 ~~~~~g~-~~~A~~~~~~al~l~  596 (608)
                      ++.+.|+ .++|.++|++..+..
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcC
Confidence            9999998 578999999988753

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.91  E-value=0.65  Score=43.81  Aligned_cols=94  Identities=13%  Similarity=0.127  Sum_probs=77.7

Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---H-------------
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA---R-------------  569 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~-------------  569 (608)
                      ..+++.|..++|+......++.+|.++.....+-.+++-.|+++.|.+.++.+.+++|+....   |             
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v   84 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   84 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999998875321   1             


Q ss_pred             -------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          570 -------------------LRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       570 -------------------~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                                         ..-+......|+.++|...-.++++..|..
T Consensus        85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence                               122444455689999999999998887753

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.88  E-value=0.23  Score=52.06  Aligned_cols=77  Identities=18%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK  578 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~  578 (608)
                      ..+|++......+..|..+|.+|+.+.|++...++.||.+....|+.-+|+-+|-+++.....++.+..++..++.+
T Consensus       156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999998877788888888877765

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.74  E-value=8.8  Score=41.25  Aligned_cols=183  Identities=11%  Similarity=0.014  Sum_probs=99.0

Q ss_pred             HHHhhcHHHHHHHHHHHHHcCCCChHHHHHH---HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH
Q 040048          383 AKRTRDWNTLIQETRAAIAGGADSAPQIYAL---QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA  459 (608)
Q Consensus       383 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la  459 (608)
                      .....+.+.|...+........-+.......   ++..+...+...++...+.+......+           ......++
T Consensus       224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~e~~~  292 (618)
T 1qsa_A          224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-----------TSLIERRV  292 (618)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-----------HHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-----------hHHHHHHH
Confidence            3344566777777766544322222222222   222222333244555555543322221           22222333


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----------
Q 040048          460 QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-----------  528 (608)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----------  528 (608)
                      ...+..|+++.|..+|..+-..........            +-+|.++...|+.++|..+|+++....           
T Consensus       293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~------------YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~L  360 (618)
T 1qsa_A          293 RMALGTGDRRGLNTWLARLPMEAKEKDEWR------------YWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRI  360 (618)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCTTGGGSHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHccccccccHhHH------------HHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence            344566778877777765433222222222            366777777788777777777765410           


Q ss_pred             ------------C--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          529 ------------P--YN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE  590 (608)
Q Consensus       529 ------------p--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~  590 (608)
                                  +  ..   .......+..+...|....|...+..++...  +..-...++.+....|.+..++....
T Consensus       361 g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~  437 (618)
T 1qsa_A          361 GEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI  437 (618)
T ss_dssp             TCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence                        0  00   0123456677888888888888888777542  24555677778888888887775543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.72  E-value=0.5  Score=44.57  Aligned_cols=63  Identities=27%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040048          272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA  334 (608)
Q Consensus       272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  334 (608)
                      ..+++.|+.++|++.....++.+|.++.....+...++-.|+++.|...++.+.+++|+....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            356788999999999999999999999999999999999999999999999999999987543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.43  E-value=0.41  Score=49.37  Aligned_cols=97  Identities=9%  Similarity=-0.031  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC---HHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPN---KASYRSNKTAALIALGRLLEAVFECREAIRIE---PHY---HRA  334 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~---~~~  334 (608)
                      ..++..+|..++..|++++|+++|.++......   ....+.....++...+++..+..++.++..+.   ++.   ...
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            457888999999999999999999998876433   35678888899999999999999999987642   221   234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048          335 HHRLANLYLRLGEVEKAIYHFKHAGP  360 (608)
Q Consensus       335 ~~~la~~~~~~g~~~~A~~~~~~al~  360 (608)
                      ....|.++...++|.+|...|-.+..
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            45567778889999999999887654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.17  E-value=1.6  Score=49.37  Aligned_cols=101  Identities=8%  Similarity=-0.111  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAIS-----IDPNKASYRSNKTAALIALGRLLEAVFECREAIRI--EPHYHRAHH  336 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~  336 (608)
                      ...|..+-..|.+.|+.++|..+|.+..+     ..| +...|..+...|.+.|+.++|++.|+++.+.  .| +...|.
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYn  204 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHH
Confidence            34688899999999999999999977543     234 5678999999999999999999999999874  45 567888


Q ss_pred             HHHHHHHHcCC-HHHHHHHHHHhCC-CCCchh
Q 040048          337 RLANLYLRLGE-VEKAIYHFKHAGP-EADQVD  366 (608)
Q Consensus       337 ~la~~~~~~g~-~~~A~~~~~~al~-~~~p~~  366 (608)
                      .+-.++.+.|+ .++|.+.|++... .+.|+.
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~  236 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQA  236 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence            88889999998 4788888887753 144544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.80  E-value=17  Score=42.41  Aligned_cols=144  Identities=15%  Similarity=0.039  Sum_probs=73.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHH
Q 040048          303 NKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD  382 (608)
Q Consensus       303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~  382 (608)
                      .+...+...+.++-|.+    .+..-|.++...+.+|.++...|++++|..+|+++...+.......             
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-------------  879 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-------------  879 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-------------
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-------------
Confidence            34445555666655443    3345566777778888888888888888888888754222211000             


Q ss_pred             HHHhhcHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH
Q 040048          383 AKRTRDWNTLIQETRAAIAGG--ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ  460 (608)
Q Consensus       383 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~  460 (608)
                          ..    ...........  ....+..|..+..++...+.++.+++..+.+++..+.+....     ....|..+-.
T Consensus       880 ----~~----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~-----~~~l~~~iFk  946 (1139)
T 4fhn_B          880 ----AV----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL-----SIAITHETLK  946 (1139)
T ss_dssp             ----SS----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH-----HHHHHHHHHH
T ss_pred             ----hh----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh-----HHHHHHHHHH
Confidence                00    00000111111  111233444555566666666666666665554332211100     1235555566


Q ss_pred             HHHHcCCHHHHHHHHH
Q 040048          461 VNLACGRFEDALAAIQ  476 (608)
Q Consensus       461 ~~~~~g~~~~A~~~~~  476 (608)
                      .+...|+|++|...+.
T Consensus       947 ~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          947 TACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHCCSGGGGHHHH
T ss_pred             HHHhhCCHHHHHHHHH
Confidence            6666666666665554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.42  E-value=0.43  Score=49.23  Aligned_cols=105  Identities=9%  Similarity=-0.065  Sum_probs=75.2

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCC-chhHHHHHH
Q 040048          297 KASYRSNKTAALIALGRLLEAVFECREAIRIEP---HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEAD-QVDIAKAKS  372 (608)
Q Consensus       297 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~  372 (608)
                      ...++..+|..|...|++++|.+.|.++.....   .-.+.+..+..++...+++..+...+.++..... ..+....  
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~--  207 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR--  207 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH--
Confidence            455789999999999999999999999887432   2367888899999999999999999998743111 1111111  


Q ss_pred             HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC
Q 040048          373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGG  403 (608)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  403 (608)
                      .......|..+...++|..|...|-.++...
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            1223334555666788888888887776543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.33  E-value=0.71  Score=48.04  Aligned_cols=203  Identities=11%  Similarity=0.034  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCCCChhHHHHHHHHHHHcCCHHHHH----------HHHHHHH
Q 040048          267 LKIMGNEDYKAGNFAEALALYDAAIS-----------IDPNKASYRSNKTAALIALGRLLEAV----------FECREAI  325 (608)
Q Consensus       267 ~~~lg~~~~~~g~~~~Al~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~eA~----------~~~~~al  325 (608)
                      +...-..++..+++++|..+-...+.           +|+-.+.+|+.++.++...|+.....          ..+-.++
T Consensus       139 ~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~  218 (523)
T 4b4t_S          139 HLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL  218 (523)
T ss_dssp             ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH
Confidence            33444456788899999888776651           13445667888888888888766532          1222222


Q ss_pred             h-----hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCch-hHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048          326 R-----IEPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQV-DIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRA  398 (608)
Q Consensus       326 ~-----~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  398 (608)
                      +     .++.. ...+..+-..|...+.|+.|.....++.   .|. .......+..++..|.++...++|.+|..++..
T Consensus       219 rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~  295 (523)
T 4b4t_S          219 KIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA  295 (523)
T ss_dssp             HHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            2     12221 5578888999999999999999999984   232 223344567788899999999999999999999


Q ss_pred             HHHcCCCCh------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC---HH
Q 040048          399 AIAGGADSA------PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR---FE  469 (608)
Q Consensus       399 al~~~~~~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~  469 (608)
                      ++...|...      ..++-.+..+-+-+|+..+-...-...++             .....|..++.++ +.|+   +.
T Consensus       296 A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~-------------~~L~pY~~Lv~Av-r~GdL~~F~  361 (523)
T 4b4t_S          296 AIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQ-------------KSLLPYYHLTKAV-KLGDLKKFT  361 (523)
T ss_dssp             HTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCH-------------HHHHHHHHHHHHH-HHTCHHHHH
T ss_pred             HHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHH-------------HHHHHHHHHHHHH-HcCCHHHHH
Confidence            998776442      12332333333335765432222111111             0134466666664 4566   45


Q ss_pred             HHHHHHHHHHHhCCCCh
Q 040048          470 DALAAIQKAAKQDSNNK  486 (608)
Q Consensus       470 ~A~~~~~~al~~~p~~~  486 (608)
                      .+++-++..+..+....
T Consensus       362 ~~L~~h~~~F~~Dgty~  378 (523)
T 4b4t_S          362 STITKYKQLLLKDDTYQ  378 (523)
T ss_dssp             HHHHHTHHHHHHTTCTH
T ss_pred             HHHHHhcceeccCChhH
Confidence            56666666666665443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.27  E-value=14  Score=35.82  Aligned_cols=80  Identities=6%  Similarity=-0.162  Sum_probs=51.6

Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------h---cCCCCHHHHHHHHH-H
Q 040048          516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL----------------N---VRPGYSKARLRRAD-C  575 (608)
Q Consensus       516 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------------~---~~p~~~~a~~~la~-~  575 (608)
                      +|+.+-.+.-...-.++..+..+|..|.+.|++.+|..+|-..-                +   -.|...+.+..+|. .
T Consensus       118 ~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~  197 (312)
T 2wpv_A          118 GMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFN  197 (312)
T ss_dssp             HHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            34444443323233678889999999999999988888773110                1   12233455555554 3


Q ss_pred             HHHcCCHHHHHHHHHHHHHh
Q 040048          576 FAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       576 ~~~~g~~~~A~~~~~~al~l  595 (608)
                      |..+|+...|...|....+.
T Consensus       198 yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          198 YLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHH
Confidence            67889999999998876643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.63  E-value=1.7  Score=45.16  Aligned_cols=146  Identities=12%  Similarity=-0.033  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCC--CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH----------HHHHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPN--FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL----------AAIQKA  478 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~----------~~~~~a  478 (608)
                      +.+.-..+...+++++|..+-...+.  .-........ ..-.+.+|+..+.++...|+.....          ..+-.+
T Consensus       139 ~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtl-D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~  217 (523)
T 4b4t_S          139 HLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSL-NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF  217 (523)
T ss_dssp             -----------------------------------------------------------------CHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhH-HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH
Confidence            33344455667788888777665541  1110000000 0013677888888887777766532          222223


Q ss_pred             HHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC---HHHHHHHHHHHHHcCCHHHH
Q 040048          479 AKQDSN--NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YN---SVLLCNRAACRSKLGQFEKA  551 (608)
Q Consensus       479 l~~~p~--~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~---~~~~~~la~~~~~~g~~~~A  551 (608)
                      +....-  +...        .+..+..+-..|...+.|++|..+..++.-...  .+   ...++.+|.++.-.++|.+|
T Consensus       218 ~rta~lr~D~~~--------qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA  289 (523)
T 4b4t_S          218 LKIASLKHDNET--------KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA  289 (523)
T ss_dssp             HHHCCSCSSSCH--------HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcccCcch--------hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence            322111  1111        122345778899999999999999999852211  11   46778899999999999999


Q ss_pred             HHHHHHHHhcCCCC
Q 040048          552 IEDCNAALNVRPGY  565 (608)
Q Consensus       552 ~~~~~~al~~~p~~  565 (608)
                      .+++..|+...|.+
T Consensus       290 ~~~L~~A~rkap~~  303 (523)
T 4b4t_S          290 NEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHhCCcc
Confidence            99999999887653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.63  E-value=2.6  Score=49.27  Aligned_cols=118  Identities=7%  Similarity=-0.048  Sum_probs=86.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------
Q 040048          458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----------  527 (608)
Q Consensus       458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------  527 (608)
                      +...+...+.++-+.+    .+...+.++...            +.+|.++...|++++|..+|+++..-          
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~------------yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~  881 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAV------------YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV  881 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHH------------HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSS
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHH------------HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhh
Confidence            4444555666655543    334556665443            37899999999999999999987431          


Q ss_pred             -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 040048          528 -------------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP-GYS----KARLRRADCFAKIEKWEASMQDY  589 (608)
Q Consensus       528 -------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~----~a~~~la~~~~~~g~~~~A~~~~  589 (608)
                                   ....+..|..+..++.+.|.++.+++..+.|++..+ ++.    ..|.++-..+..+|+|++|...+
T Consensus       882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL  961 (1139)
T 4fhn_B          882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL  961 (1139)
T ss_dssp             HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred             hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence                         111245677888999999999999999999998754 333    26778888899999999997776


Q ss_pred             HH
Q 040048          590 EI  591 (608)
Q Consensus       590 ~~  591 (608)
                      ..
T Consensus       962 ~~  963 (1139)
T 4fhn_B          962 MV  963 (1139)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.24  E-value=26  Score=34.18  Aligned_cols=138  Identities=14%  Similarity=0.080  Sum_probs=76.6

Q ss_pred             CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          404 ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       404 ~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                      +.-.+.++..+|..|.+.+++.+|..+|--.  .++.           ++.+..+-.-+...+               .|
T Consensus       132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg--~~~s-----------~~~~a~mL~ew~~~~---------------~~  183 (336)
T 3lpz_A          132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLG--TKES-----------PEVLARMEYEWYKQD---------------ES  183 (336)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS--CTTH-----------HHHHHHHHHHHHHTS---------------CG
T ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHhc--CCch-----------HHHHHHHHHHHHHhc---------------CC
Confidence            4455788888899999888888888887422  1111           222222221111211               12


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----C------------------CCCCHHH-HHHHHH
Q 040048          484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG----L------------------DPYNSVL-LCNRAA  540 (608)
Q Consensus       484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~------------------~p~~~~~-~~~la~  540 (608)
                      ...+.+.           ......|...++...|...+...++    .                  .|..+.+ +..+..
T Consensus       184 ~e~dlfi-----------aRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLl  252 (336)
T 3lpz_A          184 HTAPLYC-----------ARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLL  252 (336)
T ss_dssp             GGHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHH
T ss_pred             ccHHHHH-----------HHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHH
Confidence            2222221           1333556778888888775544332    1                  1333332 222333


Q ss_pred             HHHHcCC---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcC
Q 040048          541 CRSKLGQ---FEKAIEDCNAALNVRP-GYSKARLRRADCFAKIE  580 (608)
Q Consensus       541 ~~~~~g~---~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g  580 (608)
                      +-.+.+.   |..-.+.|...++.+| .....+-.+|.+|+...
T Consensus       253 lt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          253 LSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             HHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence            3444553   4445566777777787 78888889999998653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=84.29  E-value=0.0091  Score=61.07  Aligned_cols=350  Identities=13%  Similarity=0.047  Sum_probs=202.9

Q ss_pred             ccccccCccCCCCCCCCcccccccccc-CCCcccccccCCCCCCCCCCcchhHHHHhhhC----------CCCHHHHHHH
Q 040048          202 GVRGNNNTNKNNNRYPNSVMGNVVKKQ-NDHPQNHYNYNPPKPASSSSAEPTSLCRALST----------RMDPETLKIM  270 (608)
Q Consensus       202 A~~~~~~~~~~~~~~~~a~lg~i~~~~-~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~l  270 (608)
                      |+.+|-++  .+|......+..+-... +++-..+.+++.+...+...+.+..++-+...          ..+..-.-..
T Consensus        73 AIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~V  150 (624)
T 3lvg_A           73 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQV  150 (624)
T ss_dssp             TTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHH
T ss_pred             HHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHH
Confidence            55555442  34544444333332222 67777777777777666555544444433322          2233345678


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK  350 (608)
Q Consensus       271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  350 (608)
                      |.-++..|.|+.|.-+|..        ..-|..|+.++..+|+|..|++..++|     +++..|-....++...+++.-
T Consensus       151 GDrcf~e~lYeAAKilys~--------isN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrL  217 (624)
T 3lvg_A          151 GDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL  217 (624)
T ss_dssp             HHHHHHSCCSTTSSTTGGG--------SCCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTT
T ss_pred             HHHHHHccCHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHH
Confidence            9999999999988877753        233556788999999999999887766     456678888888899998888


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048          351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET  430 (608)
Q Consensus       351 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~  430 (608)
                      |.-+--..+  +.++.         +-.+...|...|-+++.+..++..+.+...+ ..++..+|.+|.+- +.++-.+.
T Consensus       218 AqicGLniI--vhade---------L~elv~~YE~~G~f~ELIsLlEaglglErAH-mGmFTELaILYsKY-~PeKlmEH  284 (624)
T 3lvg_A          218 AQMCGLHIV--VHADE---------LEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKF-KPQKMREH  284 (624)
T ss_dssp             TTHHHHHHH--CCSSC---------CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC-HHHHHHHHHHHHSS-CTTHHHHH
T ss_pred             HHHhcchhc--ccHHH---------HHHHHHHHHhCCCHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHhc-CHHHHHHH
Confidence            776655544  22222         1224455677788999999999998765555 45677778777654 56666666


Q ss_pred             hhcCCCCC--CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHhCCCChHHHH-HHHH
Q 040048          431 LKNGPNFD--VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ-------------KAAKQDSNNKEVNM-VMRK  494 (608)
Q Consensus       431 l~~al~~~--p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------------~al~~~p~~~~~~~-~l~~  494 (608)
                      ++-....-  |+-..    .-.....|..+..+|..-.+|+.|....-             +++..-. +.++++ .+..
T Consensus       285 lklf~sriNipKvir----acE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa-N~EiyYKAi~F  359 (624)
T 3lvg_A          285 LELFWSRVNIPKVLR----AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVELYYRAIQF  359 (624)
T ss_dssp             HTTSSSSSCCTTTHH----HHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS-CSHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHH----HHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc-hHHHHHHHHHH
Confidence            66543311  11100    01236778888889999999998764321             1111111 111111 0000


Q ss_pred             H--HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048          495 A--KGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-----------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV  561 (608)
Q Consensus       495 ~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  561 (608)
                      .  .....+..+-.++...=+....+..|++.-.+           +.++..+--.+-.+|....+|+.    ++..++.
T Consensus       360 YL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~----LR~SId~  435 (624)
T 3lvg_A          360 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA----LRTSIDA  435 (624)
T ss_dssp             HTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH----HHHTTSS
T ss_pred             HHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH----HHHHHHH
Confidence            0  00000012222233333444555555554221           33556677778888999998874    3333332


Q ss_pred             CCC--------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          562 RPG--------------YSKARLRRADCFAKIEKWEASMQD  588 (608)
Q Consensus       562 ~p~--------------~~~a~~~la~~~~~~g~~~~A~~~  588 (608)
                      ..+              -.+...--|.+|.+.++|++|+..
T Consensus       436 ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l  476 (624)
T 3lvg_A          436 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVEL  476 (624)
T ss_dssp             CCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred             hccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHH
Confidence            222              234445557788888888888753

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=81.86  E-value=0.00018  Score=73.39  Aligned_cols=266  Identities=13%  Similarity=0.051  Sum_probs=159.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ..|+.|..+|.+.+..+...+||+.|-++     +++..+.....+..+.|.|++=+.++.-+-+. -..+.+-..|..+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a  125 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA  125 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence            44667888888888888888888777543     34445555556666778888877777766543 2333444556666


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL  421 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~  421 (608)
                      |.+.++..+-.    ..+.  .|+..       -....|.-....|.|+.|.-.|..+         .-|..++.++..+
T Consensus       126 yAk~~rL~elE----efl~--~~N~A-------~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L  183 (624)
T 3lvg_A          126 LAKTNRLAELE----EFIN--GPNNA-------HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL  183 (624)
T ss_dssp             HHTSCSSSTTT----STTS--CCSSS-------CTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSC
T ss_pred             HHhhCcHHHHH----HHHc--CCCcc-------cHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHH
Confidence            77776644322    2221  11110       0111222222333333332222110         0123456666677


Q ss_pred             CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                      |+|..|.+.-+++-.               ..+|-.........+++.-|-.+--.++ ..++..+              
T Consensus       184 ~~yq~AVdaArKAns---------------~ktWKeV~~ACvd~~EfrLAqicGLniI-vhadeL~--------------  233 (624)
T 3lvg_A          184 GEYQAAVDGARKANS---------------TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELE--------------  233 (624)
T ss_dssp             SGGGSSTTTTTTCCS---------------SCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSCCS--------------
T ss_pred             HHHHHHHHHHHhcCC---------------hhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHHHH--------------
Confidence            777777666666543               5667777777788888877766655544 3344333              


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC------CHHHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--RPG------YSKARLRRA  573 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~------~~~a~~~la  573 (608)
                       .+...|...|.|+|-+.+++.++.+..-+...+..||.+|.+- +.++-++.++--...  -|.      ....|-.+-
T Consensus       234 -elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv  311 (624)
T 3lvg_A          234 -ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV  311 (624)
T ss_dssp             -GGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred             -HHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence             2336778899999999999999998888899999999988765 344444444332111  122      234577788


Q ss_pred             HHHHHcCCHHHHHH
Q 040048          574 DCFAKIEKWEASMQ  587 (608)
Q Consensus       574 ~~~~~~g~~~~A~~  587 (608)
                      .+|.+-.+|+.|..
T Consensus       312 fLY~~ydE~DnA~l  325 (624)
T 3lvg_A          312 FLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHHTCHHHHHH
T ss_pred             HHHhcchhHHHHHH
Confidence            88888888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	608
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-23
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-18
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-14
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-10
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-07
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-12
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	8e-11
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	9e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-09
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	7e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	7e-06
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	4e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	3e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.003
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	9e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-23
 Identities = 52/328 (15%), Positives = 92/328 (28%), Gaps = 30/328 (9%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           + + +Y+AG+F  A          +P+        ++      RL  +      AI+  P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDW 389
               A+  L N+Y         +         A ++                 A      
Sbjct: 65  LLAEAYSNLGNVYKE----RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 390 NTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI 449
                               +  L               + ++  PN             
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN------------- 167

Query: 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF 509
             A        V  A G    A+   +KA   D N  +  + +            GN L 
Sbjct: 168 -FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL------------GNVLK 214

Query: 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
           +   F  A AAY   L L P ++V+  N A    + G  + AI+    A+ ++P +  A 
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 570 LRRADCFAKIEKWEASMQDYEILKKEAP 597
              A+   +      +   Y    +  P
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCP 302

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 3e-18
 Identities = 59/363 (16%), Positives = 108/363 (29%), Gaps = 44/363 (12%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
           +   L ++ +  ++      +      AI  +P  A   SN       LG + +   + +
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN-------LGNVYKERGQLQ 84

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
           EAI    H  R      + Y+ L     A    + A                   +    
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE----TLKNGPNF- 437
            K              AI    + A     L         +   A       +   PNF 
Sbjct: 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNL-GCVFNAQGEIWLAIHHFEKAVTLDPNFL 203

Query: 438 --------------DVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQKA 478
                           D     +    + +        NLAC     G  + A+   ++A
Sbjct: 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263

Query: 479 AKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNR 538
            +   +  +    +             NAL ++   +EA   Y   L L P ++  L N 
Sbjct: 264 IELQPHFPDAYCNL------------ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598
           A  + + G  E+A+     AL V P ++ A    A    +  K + ++  Y+   + +P 
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 599 DEE 601
             +
Sbjct: 372 FAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (188), Expect = 1e-15
 Identities = 40/297 (13%), Positives = 83/297 (27%), Gaps = 64/297 (21%)

Query: 284 LALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343
            A Y  AI   PN A   SN      A G +  A+    +A+ ++P++  A+  L N+  
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG 403
                ++A+  +  A   +                                         
Sbjct: 215 EARIFDRAVAAYLRALSLSPNH-------------------------------------- 236

Query: 404 ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL 463
                 ++   A    +      A +T +                    +     A    
Sbjct: 237 ----AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH----------FPDAYCNLANALK 282

Query: 464 ACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD 523
             G   +A      A +    + +    +             N   +Q    EA   Y  
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNL------------ANIKREQGNIEEAVRLYRK 330

Query: 524 GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580
            L + P  +    N A+   + G+ ++A+     A+ + P ++ A     +   +++
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 4e-15
 Identities = 50/285 (17%), Positives = 83/285 (29%), Gaps = 66/285 (23%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
                  +G      G    A+  ++ A+++DPN      N    L        AV    
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382
            A+ + P++   H  LA +Y   G ++ AI  ++            +A  LQ H      
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR------------RAIELQPHF----- 270

Query: 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET 442
                                    P  Y   A AL +     EA++             
Sbjct: 271 -------------------------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305

Query: 443 TRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR 502
                           A +    G  E+A+   +KA +                  AAA 
Sbjct: 306 DSLN----------NLANIKREQGNIEEAVRLYRKALEVFPEF-------------AAAH 342

Query: 503 SN-GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG 546
           SN  + L +Q K  EA   Y + + + P  +    N      ++ 
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 23/97 (23%), Positives = 40/97 (41%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
                   +    Y+ G    A+  Y  AI + P+      N   AL   G + EA    
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
             A+R+ P +  + + LAN+    G +E+A+  ++ A
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 11/59 (18%), Positives = 19/59 (32%)

Query: 544 KLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602
           + G FE A   C       P  +   L  +    +  + + S     +  K+ P   E 
Sbjct: 11  QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 3e-14
 Identities = 31/271 (11%), Positives = 73/271 (26%), Gaps = 42/271 (15%)

Query: 315 LEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ 374
           L++    R+A  ++     +    A ++     ++     ++        ++ A  K ++
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKM--LVTDLEYALDKKVE 57

Query: 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK----HQEADET 430
             L           +   I   +        + P    +QA   L L      + +  + 
Sbjct: 58  QDLWN-------HAFKNQITTLQGQAK--NRANPNRSEVQANLSLFLEAASGFYTQLLQE 108

Query: 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490
           L    N D+                     ++         +     +      +  V++
Sbjct: 109 LCTVFNVDLP----------CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL 158

Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550
                         G+    + + S+A + Y     L P N       A   S  G    
Sbjct: 159 --------------GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT 204

Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEK 581
            I     ++ V+  +  A        +K  +
Sbjct: 205 TIFYYCRSIAVKFPFPAASTNLQKALSKALE 235

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 7e-10
 Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
                  +G    K  + +  +    ++ S          +         +  +A    R
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV--HLGDIARYRNQTSQAESYYR 176

Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            A ++ P   + +++LA L    G+    I+++  +
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 255 CRALSTRMDP-ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR 313
            ++ S        L  +G+        ++A + Y  A  + P+     +       + G 
Sbjct: 142 PQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD 201

Query: 314 LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
            L  +F    +I ++  +  A   L     +  E    +
Sbjct: 202 HLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 8/87 (9%), Positives = 22/87 (25%), Gaps = 2/87 (2%)

Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH 330
              +  +G + + L       ++D       S               V     +      
Sbjct: 93  LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YI 150

Query: 331 YHRAHHRLANLYLRLGEVEKAIYHFKH 357
                  L ++     +  +A  +++H
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRH 177

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH 330
                  G   +AL L   AI   P  AS RS+    L   G    A  +  ++I++ P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWN 390
           Y     +L +L       +                 + + + L   L     +  ++D+ 
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAAT------AKVLGENEELTKSLVSFNLSMVSQDYE 116

Query: 391 TLIQETRAAIAGGADSAPQIYALQAEAL 418
            + +          +            +
Sbjct: 117 QVSELALQIEELRQEKGFLANDTSFSDV 144

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 13/105 (12%), Positives = 32/105 (30%)

Query: 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR 562
           +       + +  +A     + +   P ++ L  +        G FE+A E    ++ + 
Sbjct: 1   TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

Query: 563 PGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
           P Y     +        +  +   Q     K    ++E     + 
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 15/142 (10%)

Query: 463 LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALFKQAKFSEAAAAY 521
           L+ G+ + AL  + +A K    +             A+ RS+    L     F  A    
Sbjct: 7   LSEGQLQQALELLIEAIKASPKD-------------ASLRSSFIELLCIDGDFERADEQL 53

Query: 522 GDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR-PGYSKARLRRADCFAKIE 580
              + L P                   +   +    A  +         L   +     +
Sbjct: 54  MQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ 113

Query: 581 KWEASMQDYEILKKEAPDDEEV 602
            +E   +    +++   +   +
Sbjct: 114 DYEQVSELALQIEELRQEKGFL 135

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 12/97 (12%), Positives = 21/97 (21%), Gaps = 1/97 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVF-EC 321
           D              G+F  A      +I + P      S     + A     +      
Sbjct: 29  DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88

Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
              +  E           NL +   + E+        
Sbjct: 89  TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 1e-12
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 6/177 (3%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           + LK  GN  +    + EA A Y  AI+ +P  A Y +N+    + + +  +A+ +CR A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
           + ++    +AH  L    L +   ++AI + + A   A +  +     + + L       
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---- 120

Query: 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
             +       E R         +     + AE   +L + Q   E  ++  +    +
Sbjct: 121 --KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQ 175

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 30/97 (30%), Positives = 47/97 (48%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           GN LF   K+ EAAA YG  +  +P  +V   NRA C  K+ Q E+A+ DC  AL +   
Sbjct: 11  GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70

Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601
             KA      C  ++E ++ ++ + +     A +   
Sbjct: 71  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 2/111 (1%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
             +    +G    +  ++ EA+A    A S+   +     +   + + + +         
Sbjct: 71  SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 323 EAIRIEPHYHRAHHRL--ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371
             I  E   H    RL  A     L E ++     +  G    Q    +AK
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (148), Expect = 8e-11
 Identities = 32/322 (9%), Positives = 83/322 (25%), Gaps = 46/322 (14%)

Query: 282 EALALYDAAISIDPNKASYRSNKTAALIAL----------GRLLEAVFECREAIRIEPHY 331
             L L    +  +P+ A+  + +   L  L            +   +      +R+ P  
Sbjct: 47  SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106

Query: 332 HRAHHRLANLYLRLGE--VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDW 389
           +   H    L  RL E    + +            ++  +         +   A+     
Sbjct: 107 YGTWHHRCWLLSRLPEPNWARELELCARF------LEADERNFHCWDYRRFVAAQAAVAP 160

Query: 390 NTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI 449
              +  T + I     +    +  ++  L +LH   ++    +   N  + E        
Sbjct: 161 AEELAFTDSLITRNFSNY-SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-------- 211

Query: 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF 509
                              E    A        S       ++ +A+ +     +     
Sbjct: 212 ------------------LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST 253

Query: 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
                 E+     +    + +  + +         L   ++ ++  +    V P  +   
Sbjct: 254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313

Query: 570 LRRADCFAKIEKWEASMQDYEI 591
                 F  +E     M+  ++
Sbjct: 314 DDLRSKFL-LENSVLKMEYADV 334

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 14/141 (9%), Positives = 32/141 (22%)

Query: 211 KNNNRYPNSVMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIM 270
              +  P+S     + +     +     N      +  +        L         ++ 
Sbjct: 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS 248

Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH 330
             +     +  E+          +            AL  L    E +        ++P 
Sbjct: 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308

Query: 331 YHRAHHRLANLYLRLGEVEKA 351
                  L + +L    V K 
Sbjct: 309 RAAYLDDLRSKFLLENSVLKM 329

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 34/302 (11%), Positives = 71/302 (23%), Gaps = 26/302 (8%)

Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH 330
           G    + G+   A+ L++AA+  DP                 + L A+   R  + ++P 
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 85

Query: 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWN 390
              A   LA  +       +A    +                L+             +  
Sbjct: 86  NQTALMALAVSFTNESLQRQACEILRDW--------------LRYTPAYAHLVTPAEEGA 131

Query: 391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIG 450
                  +    G+  +  ++    E  L   +               V           
Sbjct: 132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN-GNALF 509
                   +        +    A +    + +         +    G   +R N G +  
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251

Query: 510 KQAKFSEAAAAYGDGLGLDPYN-----------SVLLCNRAACRSKLGQFEKAIEDCNAA 558
                 EA   + + L +   +             +        S LGQ +         
Sbjct: 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311

Query: 559 LN 560
           L+
Sbjct: 312 LS 313

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 8/136 (5%)

Query: 473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532
           A   K  + +  N   +               G    ++     A   +   +  DP + 
Sbjct: 2   ATYDKGYQFEEENPLRD--------HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM 53

Query: 533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
                    +++  Q   AI      L ++P    A +  A  F        + +     
Sbjct: 54  EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 113

Query: 593 KKEAPDDEEVDQALQE 608
            +  P    +    +E
Sbjct: 114 LRYTPAYAHLVTPAEE 129

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 19/109 (17%), Positives = 31/109 (28%)

Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
           +G          EA+A Y  A+ + P     R N   + I LG   EAV    EA+ ++ 
Sbjct: 212 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271

Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLN 378
                      +   +    +               D     +L     
Sbjct: 272 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 320

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 45/334 (13%), Positives = 85/334 (25%), Gaps = 19/334 (5%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY-----RSNKTAALIALGRLLE 316
           M  E   +        GN  EA  L   A+   P    Y      S     L   G L  
Sbjct: 10  MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR 69

Query: 317 AVFECREAIRI------EPHYHRAHHRLANLYLRLGEVEKAIYHFKHA---GPEADQVDI 367
           ++   ++  ++        +   +  + + +    G ++ A    + A     E     +
Sbjct: 70  SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 129

Query: 368 AKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA 427
              + L     +   A    D       +   +        Q+  L            + 
Sbjct: 130 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ-CSLARGDL 188

Query: 428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487
           D         +       +     +N   VR       G    A   ++  AK +  N  
Sbjct: 189 DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 248

Query: 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547
                 +   +A A+             E        L L    +  L        + G+
Sbjct: 249 FLQGQWRN--IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306

Query: 548 FEKAIEDCNAALNV--RPGYSKARLRRADCFAKI 579
              A      AL +  R G+    +   +  A+ 
Sbjct: 307 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 340

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 55.7 bits (132), Expect = 7e-09
 Identities = 44/336 (13%), Positives = 92/336 (27%), Gaps = 23/336 (6%)

Query: 290 AISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH-----RAHHRLANLYLR 344
            I  D   A + + +    I  G   EA    + A+   P         A   L  +   
Sbjct: 4   DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63

Query: 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA 404
            GE+ +++   +    +  +       +L + + +           T  +    A     
Sbjct: 64  KGELTRSLALMQQT-EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNF--DVDETTRFFGPIGNANLLVVRAQVN 462
           +   +   +    +    +   A   L           E    + P      L +  Q +
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182

Query: 463 LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG 522
           LA G  ++A + + +      N K  +  +       A +            + AA    
Sbjct: 183 LARGDLDNARSQLNRLENLLGNGKYHSDWIS-----NANKVRVIYWQMTGDKAAAANWLR 237

Query: 523 DGLGLDPYNSVLL----CNRAACRSKLGQFEKAIEDCNAALNV------RPGYSKARLRR 572
                +  N+  L     N A  +  LG+FE A                    ++  L  
Sbjct: 238 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297

Query: 573 ADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
              + +  +   + +      K A     +   + E
Sbjct: 298 NQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
              K +GN+ YK  +F  AL  YD A  +DP   +Y +N+ A     G   +    C +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 325 IRIEP-------HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA 370
           I +            +A+ R+ N Y +  + + AI+ +  +  E    D+ K 
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 5e-07
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED 554
            K     +  GN  +K+  F  A   Y     LDP N   + N+AA   + G + K  E 
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60

Query: 555 CNAALNVRP-------GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE------E 601
           C  A+ V           +KA  R  + + K EK++ ++  Y     E    +      +
Sbjct: 61  CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120

Query: 602 VDQALQE 608
            ++ L+E
Sbjct: 121 AEKILKE 127

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 25/94 (26%), Positives = 43/94 (45%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
             LK  GN+    GN  +AL  Y  AI +DP+     SN++AA    G   +A  +  + 
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           + ++P + + + R A     L   E+A   ++  
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 97

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 30/111 (27%), Positives = 55/111 (49%)

Query: 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
           V   +  GN         +A   Y + + LDP+N VL  NR+A  +K G ++KA ED   
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
            ++++P + K   R+A     + ++E + + YE   K   ++ ++ + LQ 
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 28/260 (10%), Positives = 58/260 (22%), Gaps = 31/260 (11%)

Query: 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA 368
           + L R+ + +         +    +  +    LY  LG    A   F  A      +   
Sbjct: 17  VILARMEQIL---ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 369 KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD 428
                               ++++++           +    +  +  AL    + + A 
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAFDSVLELDP--------TYNYAHLNRGIALYYGGRDKLAQ 125

Query: 429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488
           + L      D +          +    +            +      Q   K D      
Sbjct: 126 DDLLAFYQDDPN----------DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW 175

Query: 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF 548
           N+V                + +Q       A   D   L  + S            LG  
Sbjct: 176 NIVEFYL----------GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 225

Query: 549 EKAIEDCNAALNVRPGYSKA 568
           + A      A+         
Sbjct: 226 DSATALFKLAVANNVHNFVE 245

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 38/284 (13%), Positives = 69/284 (24%), Gaps = 32/284 (11%)

Query: 268 KIMGNEDYKAGNFAEALALYDAAISI----DPNKASYRSNKTAALIALGRLLEAVFECRE 323
           +++             LA  +  ++     D  +A     +     +LG    A  +  +
Sbjct: 3   EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQ 62

Query: 324 AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDA 383
           A+ I P      + L     + G  + A   F          + A      A      D 
Sbjct: 63  ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 122

Query: 384 KRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETT 443
               D                D    ++   AE  L   + +E  +      + +     
Sbjct: 123 LAQDDLL------AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN 176

Query: 444 RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS 503
                +GN +               E   A          +  E N  +           
Sbjct: 177 IVEFYLGNIS----------EQTLMERLKADATDNTSLAEHLSETNFYL----------- 215

Query: 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547
            G           A A +   +  + +N V         S LGQ
Sbjct: 216 -GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 30/230 (13%), Positives = 62/230 (26%), Gaps = 16/230 (6%)

Query: 256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
           RAL+     + L   G      G  A A   +  A++I P+     +     L   G   
Sbjct: 29  RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 88

Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA 375
            A       + ++P Y+ AH          G  + A                        
Sbjct: 89  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL------------AFYQDDP 136

Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435
           +    +      +     ++ +  +    + + +           L    E     +   
Sbjct: 137 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA 196

Query: 436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN 485
           +   + +        N  L     +  L+ G  + A A  + A   + +N
Sbjct: 197 DATDNTSLAEHLSETNFYL----GKYYLSLGDLDSATALFKLAVANNVHN 242

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 512 AKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571
           A+  +  A+       D   + LL  R      LG    A  D + AL +RP   +    
Sbjct: 20  ARMEQILASRAL---TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 76

Query: 572 RADCFAKIEKWEASMQDY 589
                 +   ++A+ + +
Sbjct: 77  LGIYLTQAGNFDAAYEAF 94

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL-EAVFECREAIRIEPHYHRA 334
           +      A  L   AI ++    +    +   L +L + L E +      I  +P  ++ 
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114

Query: 335 HHRLANLYLRLGEVEKAIYHFKH 357
            H    L   L +  + +     
Sbjct: 115 WHHRRVLVEWLRDPSQELEFIAD 137

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 30/276 (10%), Positives = 64/276 (23%), Gaps = 28/276 (10%)

Query: 289 AAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEV 348
             I              A L    R   A    R+AI +    +   H    L   L + 
Sbjct: 34  VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK- 92

Query: 349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP 408
                           +   + K+ Q   ++    +  RD +  ++     +   A +  
Sbjct: 93  -----DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 147

Query: 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF 468
                    + +        + +      DV   + +         ++            
Sbjct: 148 AWQHR-QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN----QRYFVISNTTGYNDRAVL 202

Query: 469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD 528
           E  +    +  K   +N+     ++                +    S+        L L 
Sbjct: 203 EREVQYTLEMIKLVPHNESAWNYLKGI-------------LQDRGLSKYPNLLNQLLDLQ 249

Query: 529 PYNSVLLCNRAA----CRSKLGQFEKAIEDCNAALN 560
           P +S                  Q +   +  N AL 
Sbjct: 250 PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 36/139 (25%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDA----------------------------------A 290
           E LK   N+ +KA ++  A+  Y                                    A
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 291 ISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL--ANLYLRLGEV 348
           I +D         + A+ +ALG+   A+ +    ++++PH   A  +    N  ++    
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 349 EKAIYHFKHAGPEADQVDI 367
           E+AI   +H     D +DI
Sbjct: 131 ERAIAGDEHKRSVVDSLDI 149

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 28/107 (26%), Positives = 49/107 (45%)

Query: 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
           ++  N  FK   +  A   Y   + L+P N++   NR+    +   +  A+ D   A+ +
Sbjct: 14  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 73

Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
              Y K   RRA     + K+ A+++DYE + K  P D++     QE
Sbjct: 74  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA----ARSNGN 506
           ++ +      +        +A  A  ++  +D +                    A  +  
Sbjct: 35  HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 94

Query: 507 ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566
               Q + ++       GL    +   +L N A   +K  +++KA E    A +++    
Sbjct: 95  EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154

Query: 567 KARLRRA 573
            +++ +A
Sbjct: 155 HSKIDKA 161

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326
           L   G       ++  AL  + A   +    +    N       L  + EA      +I 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            + H   A+ +   LY +  + + AI   K A
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 96

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
           G     +  +  A  A+     +   +S +  N     + L    +A +    ++N    
Sbjct: 12  GVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68

Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603
            + A  +R   + + EK++ +++D +    +   ++ +D
Sbjct: 69  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 107

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 19/127 (14%)

Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
                  +G       N  EA   +  +I+ D + A     +        +   A+ + +
Sbjct: 35  HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 94

Query: 323 EAI----------------RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA---GPEAD 363
           EA+                + +       + +A +Y +  E +KA      A     E  
Sbjct: 95  EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154

Query: 364 QVDIAKA 370
              I KA
Sbjct: 155 HSKIDKA 161

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 15/109 (13%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISI---------------DPNKASYRSNKTAALI 309
             +K  G   +K G + +A+  Y   +S                +    +   N     +
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 310 ALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            L    +AV  C +A+ ++    +  +R     L + E E A   F+  
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 5/156 (3%)

Query: 449 IGNANLLVVRAQVNLACGRFEDALAAIQKA---AKQDSNNKEVNMVMRKAKGVAAARSNG 505
           +  A ++  +  V    G++  A+    K     + +    E      ++  +AA  +  
Sbjct: 12  LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71

Query: 506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565
               K  ++++A       LGLD  N   L  R   +  + +FE A  D    L V P  
Sbjct: 72  MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131

Query: 566 SKARLRRADCFAKIEKW-EASMQDYE-ILKKEAPDD 599
             ARL+   C  K ++  E   + Y  + KK A  D
Sbjct: 132 KAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 494 KAKGVAAARSNGNALFKQAKFSEAAAAY---------------GDGLGLDPYNSVLLCNR 538
           K +  A  +  G   FK  K+ +A   Y                +    + +      N 
Sbjct: 11  KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 70

Query: 539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598
           A C  KL ++ KA+E C+ AL +     K   RR +    + ++E++  D+E + +  P 
Sbjct: 71  AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130

Query: 599 DEEVDQALQE 608
           ++     +  
Sbjct: 131 NKAARLQIFM 140

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 16/131 (12%), Positives = 35/131 (26%)

Query: 221 MGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNF 280
            G V  K   + Q    Y             +      S          +     K   +
Sbjct: 21  KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 80

Query: 281 AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340
            +A+   D A+ +D         +  A + +     A  +  + + + P    A  ++  
Sbjct: 81  TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM 140

Query: 341 LYLRLGEVEKA 351
              +  E  + 
Sbjct: 141 CQKKAKEHNER 151

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 19/116 (16%), Positives = 28/116 (24%), Gaps = 22/116 (18%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----------------------SYRS 302
              K  G     AG F +A     AA+                                +
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHT 71

Query: 303 NKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
            K  A IA GR    + E        P+      +L   Y        A+  ++  
Sbjct: 72  AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 19/149 (12%), Positives = 35/149 (23%), Gaps = 24/149 (16%)

Query: 455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF 514
                    A GRFE A   +  A ++                          L      
Sbjct: 14  EKTAGVHAAAAGRFEQASRHLSAALREWRGP---------------------VLDDLR-- 50

Query: 515 SEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574
            +          L     +    +A      G+    I +  A     P       +   
Sbjct: 51  -DFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLIT 109

Query: 575 CFAKIEKWEASMQDYEILKKEAPDDEEVD 603
            +   ++   ++  Y  +K    DD  +D
Sbjct: 110 AYYLSDRQSDALGAYRRVKTTLADDLGID 138

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 17/137 (12%)

Query: 265 ETLKIMGNEDYKAGNFAEALALY----------------DAAISIDPNKASYRSNKTAAL 308
             +K  GNE +K     EA+  Y                         + S   N     
Sbjct: 18  FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY 77

Query: 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA 368
                  +A+    + ++I+ +  +A ++L    +  G +E+A  +   A    +  ++ 
Sbjct: 78  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA-ASLNPNNLD 136

Query: 369 KAKSLQAHLNKCTDAKR 385
              S +  +NK  +A++
Sbjct: 137 IRNSYELCVNKLKEARK 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 16/131 (12%)

Query: 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----------------VLLCN 537
           K +     +  GN  FK+ + +EA   Y + L    +                      N
Sbjct: 13  KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 72

Query: 538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597
            A C +K   + KAI+  +  L +     KA  +           E + ++        P
Sbjct: 73  LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132

Query: 598 DDEEVDQALQE 608
           ++ ++  + + 
Sbjct: 133 NNLDIRNSYEL 143

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 26/276 (9%), Positives = 65/276 (23%), Gaps = 41/276 (14%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
           +                 A   +  A                             + ++ 
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAA----------------------------DYQKK 69

Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
              E      +      +   G    A+   ++A          +  +            
Sbjct: 70  AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129

Query: 385 RTRDWNTLIQETRAAIA-----GGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDV 439
              D+   I     A            + + +   A+      ++ EA +         +
Sbjct: 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189

Query: 440 DETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA 499
                 +      +  + +    LA      A   +Q+   +D N  + +      K + 
Sbjct: 190 GNRLSQW---SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLI 245

Query: 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL 535
            A + G+      + SE    + + + LD +   +L
Sbjct: 246 DAVNEGD----SEQLSEHCKEFDNFMRLDKWKITIL 277

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 16/110 (14%)

Query: 265 ETLKIMGNEDYKAGNFAEALALYDAA----------------ISIDPNKASYRSNKTAAL 308
           E LK +GN  +K+ N+  A+  Y                     + P   S   N  A  
Sbjct: 28  EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 87

Query: 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
           + +     AV  C EA+ I+P   +A +R A  +  L E ++A+   K A
Sbjct: 88  LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 137

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 19/143 (13%)

Query: 482 DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY----------------GDGL 525
           D + K+V+ ++  ++     ++ GN  FK   +  A   Y                 DG 
Sbjct: 14  DVDLKDVDKILLISE---DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA 70

Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS 585
            L P     + N  AC+ K+  ++ A++ C  AL + P  +KA  RRA  +  +++++ +
Sbjct: 71  KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 130

Query: 586 MQDYEILKKEAPDDEEVDQALQE 608
           + D +  ++ AP+D+ +   L +
Sbjct: 131 LADLKKAQEIAPEDKAIQAELLK 153

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-------RL 314
           +  E    +G   Y   ++       + A+           +K + L  L         L
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62

Query: 315 LEAVFECREAIRIEPHYHRAHHRLANLYLRLGE 347
            +A+   ++ + ++P + RA+  L      + +
Sbjct: 63  DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 15/130 (11%)

Query: 494 KAKGVAAARSNGNALFKQAKFSEAAAAY---------------GDGLGLDPYNSVLLCNR 538
           K +     +  G   FK+ K+ +A   Y                +             N 
Sbjct: 9   KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 68

Query: 539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598
           A C  KL  F  AIE CN AL +     K   RR +    +  +E +  D++ + +  P+
Sbjct: 69  AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128

Query: 599 DEEVDQALQE 608
           ++     L  
Sbjct: 129 NKAAKTQLAV 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	608
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.96
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.87
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.51
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.5
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.46
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.45
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.45
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.44
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.08
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.05
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.88
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.85
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.78
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.2
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.09
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.08
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.55
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.21
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.13
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.99
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.83
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	86.9

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=303.03  Aligned_cols=316  Identities=19%  Similarity=0.174  Sum_probs=286.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 040048          268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE  347 (608)
Q Consensus       268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  347 (608)
                      +.+|..+++.|+|++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|+++.+|..+|.+|..+|+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCchhHHHH---------------------------------------------------------
Q 040048          348 VEKAIYHFKHAGPEADQVDIAKA---------------------------------------------------------  370 (608)
Q Consensus       348 ~~~A~~~~~~al~~~~p~~~~~~---------------------------------------------------------  370 (608)
                      +++|+..+..++. ..+......                                                         
T Consensus        83 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          83 LQEAIEHYRHALR-LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence            9999998888766 444332100                                                         


Q ss_pred             -----HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccc
Q 040048          371 -----KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRF  445 (608)
Q Consensus       371 -----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~  445 (608)
                           .....+..++..+...++++.|+..+++++..+|+. ..++..+|.++...|++++|+..++++....+..    
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----  236 (388)
T d1w3ba_         162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH----  236 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC----
T ss_pred             hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc-HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH----
Confidence                 012456667788888999999999999999999987 5788999999999999999999999999888764    


Q ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048          446 FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL  525 (608)
Q Consensus       446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al  525 (608)
                            ...+..+|.++...|++++|+..|+++++++|++..++.            .+|.++...|++++|+..|++++
T Consensus       237 ------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~  298 (388)
T d1w3ba_         237 ------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC------------NLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH------------HHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHhhh
Confidence                  888999999999999999999999999999999998876            89999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       526 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      ...|.+...+..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++++..
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             hh
Q 040048          606 LQ  607 (608)
Q Consensus       606 L~  607 (608)
                      |.
T Consensus       379 lg  380 (388)
T d1w3ba_         379 MG  380 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-33  Score=283.47  Aligned_cols=305  Identities=18%  Similarity=0.182  Sum_probs=281.4

Q ss_pred             CCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          247 SSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA  324 (608)
Q Consensus       247 ~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  324 (608)
                      .+++|...+..++  .|.++++++.+|.+++..|++++|+.+|+++++.+|+++.+|..+|.+|..+|++++|+..+..+
T Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA   93 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccc
Confidence            3344556665553  47889999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HhhCC--------------------------------------------------------------------CCHHHHH
Q 040048          325 IRIEP--------------------------------------------------------------------HYHRAHH  336 (608)
Q Consensus       325 l~~~p--------------------------------------------------------------------~~~~~~~  336 (608)
                      +..+|                                                                    ++..++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (388)
T d1w3ba_          94 LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS  173 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHH
Confidence            66544                                                                    4556778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAE  416 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~  416 (608)
                      .+|.++...|++++|...+++++. .+|++      ..++..++.++...+++++|+..+.+++...+.. ...+..+|.
T Consensus       174 ~l~~~~~~~~~~~~A~~~~~~al~-~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~  245 (388)
T d1w3ba_         174 NLGCVFNAQGEIWLAIHHFEKAVT-LDPNF------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-AVVHGNLAC  245 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred             hhcccccccCcHHHHHHHHHHHHH-hCccc------HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-HHHHHHHHH
Confidence            889999999999999999999998 88888      6778889999999999999999999999998877 577888999


Q ss_pred             HHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040048          417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK  496 (608)
Q Consensus       417 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  496 (608)
                      ++...|++++|+..|+++++.+|++          ..++..+|.++...|++++|+..+++++...|.....+.      
T Consensus       246 ~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------  309 (388)
T d1w3ba_         246 VYYEQGLIDLAIDTYRRAIELQPHF----------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN------  309 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSSC----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH------
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhh------
Confidence            9999999999999999999999985          899999999999999999999999999999999988876      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048          497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF  576 (608)
Q Consensus       497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~  576 (608)
                            .+|.++...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+|.++|.+|
T Consensus       310 ------~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         310 ------NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             ------HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCC
Q 040048          577 AKIEK  581 (608)
Q Consensus       577 ~~~g~  581 (608)
                      .++||
T Consensus       384 ~~~~D  388 (388)
T d1w3ba_         384 KEMQD  388 (388)
T ss_dssp             HHTCC
T ss_pred             HHcCC
Confidence            99986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.5e-28  Score=242.41  Aligned_cols=278  Identities=16%  Similarity=0.092  Sum_probs=219.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL  343 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~  343 (608)
                      .+.++.+|..++..|++++|+.+|+++++.+|+++.+|+.+|.++...|++++|+.+|.++++++|++...|..+|.+|.
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            33457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048          344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK  423 (608)
Q Consensus       344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~  423 (608)
                      ..|++++|+..+++++. ..|..............    .                ..      ..........+...+.
T Consensus        99 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~----~----------------~~------~~~~~~~~~~~~~~~~  151 (323)
T d1fcha_          99 NESLQRQACEILRDWLR-YTPAYAHLVTPAEEGAG----G----------------AG------LGPSKRILGSLLSDSL  151 (323)
T ss_dssp             HTTCHHHHHHHHHHHHH-TSTTTGGGCC-----------------------------------------CTTHHHHHHHH
T ss_pred             ccccccccccchhhHHH-hccchHHHHHhhhhhhh----h----------------cc------cccchhhHHHHHHhhH
Confidence            99999999999999987 66654210000000000    0                00      0001111122334455


Q ss_pred             hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                      +.+|+..|.+++..+|+..        .+.++..+|.++...|++++|+..|++++..+|++..++.            .
T Consensus       152 ~~~a~~~~~~al~~~p~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~  211 (323)
T d1fcha_         152 FLEVKELFLAAVRLDPTSI--------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN------------K  211 (323)
T ss_dssp             HHHHHHHHHHHHHHSTTSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------H
T ss_pred             HHHHHHHHHHHHHHhhccc--------ccccchhhHHHHHHHHHHhhhhcccccccccccccccchh------------h
Confidence            6666667766666666532        3778888999999999999999999999999999888876            8


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------HHHHH
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK-----------ARLRR  572 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------a~~~l  572 (608)
                      +|.++...|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..           +|..+
T Consensus       212 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l  291 (323)
T d1fcha_         212 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL  291 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred             hhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999998887654           44556


Q ss_pred             HHHHHHcCCHHHHHHH
Q 040048          573 ADCFAKIEKWEASMQD  588 (608)
Q Consensus       573 a~~~~~~g~~~~A~~~  588 (608)
                      +.++..+|+.+.+...
T Consensus       292 ~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         292 RLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHTCGGGHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            7777777776655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.2e-28  Score=241.27  Aligned_cols=271  Identities=13%  Similarity=0.110  Sum_probs=214.0

Q ss_pred             HHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCC
Q 040048          287 YDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEA  362 (608)
Q Consensus       287 ~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  362 (608)
                      |++++...+++    ....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|.+++. +
T Consensus         4 ~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~   82 (323)
T d1fcha_           4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE-L   82 (323)
T ss_dssp             HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H
T ss_pred             hHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc-c
Confidence            45555554443    345789999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccc
Q 040048          363 DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET  442 (608)
Q Consensus       363 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~  442 (608)
                      +|++      ...+..++.++...|++++|+..+++++...|...... .....          ..    ..        
T Consensus        83 ~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~----------~~----~~--------  133 (323)
T d1fcha_          83 KPDN------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV-TPAEE----------GA----GG--------  133 (323)
T ss_dssp             CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGC-C------------------------------
T ss_pred             cccc------ccccccccccccccccccccccchhhHHHhccchHHHH-Hhhhh----------hh----hh--------
Confidence            8887      45666666777777777777777777766666542100 00000          00    00        


Q ss_pred             ccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          443 TRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG  522 (608)
Q Consensus       443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~  522 (608)
                             ............+...+.+.+|+..|.+++.++|+......          +..+|.++...|++++|+.+|+
T Consensus       134 -------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~----------~~~l~~~~~~~~~~~~A~~~~~  196 (323)
T d1fcha_         134 -------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV----------QCGLGVLFNLSGEYDKAVDCFT  196 (323)
T ss_dssp             --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc----------chhhHHHHHHHHHHhhhhcccc
Confidence                   00111111223345567789999999999999998765433          2388999999999999999999


Q ss_pred             HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       523 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      +++..+|+++.+|..+|.++..+|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+
T Consensus       197 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             cccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             HH
Q 040048          603 DQ  604 (608)
Q Consensus       603 ~~  604 (608)
                      +.
T Consensus       277 ~~  278 (323)
T d1fcha_         277 RG  278 (323)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-22  Score=203.34  Aligned_cols=235  Identities=13%  Similarity=0.059  Sum_probs=186.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048          260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR-LLEAVFECREAIRIEPHYHRAHHRL  338 (608)
Q Consensus       260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l  338 (608)
                      .|...+++..+|.++...+.+++|+.+|+++|+++|++..+|+++|.++..+|. +++|+.+++++++++|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            345578899999999999999999999999999999999999999999999875 9999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 040048          339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEAL  418 (608)
Q Consensus       339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~  418 (608)
                      |.++..+|++++|+..|.+++. ++|.+                                                    
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~-~dp~n----------------------------------------------------  145 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILN-QDAKN----------------------------------------------------  145 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHH-HCTTC----------------------------------------------------
T ss_pred             hHHHHhhccHHHHHHHHhhhhh-hhhcc----------------------------------------------------
Confidence            9999999999999999999887 66655                                                    


Q ss_pred             HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048          419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV  498 (608)
Q Consensus       419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  498 (608)
                                                       ..+|..+|.++...|++++|+..|+++++++|.+..+|.        
T Consensus       146 ---------------------------------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~--------  184 (315)
T d2h6fa1         146 ---------------------------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN--------  184 (315)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH--------
T ss_pred             ---------------------------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHH--------
Confidence                                             567777777777777888888888888888887777765        


Q ss_pred             HHHHHHHHHHHHcCC------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHH
Q 040048          499 AAARSNGNALFKQAK------FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY--SKARL  570 (608)
Q Consensus       499 ~~~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~  570 (608)
                          .+|.++...+.      +++|+..+.+++.++|++..+|+.++.++...| .+++...+++++++.|+.  ..++.
T Consensus       185 ----~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~  259 (315)
T d2h6fa1         185 ----QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIA  259 (315)
T ss_dssp             ----HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHH
T ss_pred             ----HHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHH
Confidence                66777666555      567888888888888888888888877755443 577777888887776653  55556


Q ss_pred             HHHHHHHHc--CCHHHHHHHHHHHH
Q 040048          571 RRADCFAKI--EKWEASMQDYEILK  593 (608)
Q Consensus       571 ~la~~~~~~--g~~~~A~~~~~~al  593 (608)
                      .++.+|...  ++.+.+...+++++
T Consensus       260 ~l~~~y~~~~~~~~~~~~~~~~ka~  284 (315)
T d2h6fa1         260 FLVDIYEDMLENQCDNKEDILNKAL  284 (315)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            666666443  33333444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.4e-24  Score=217.61  Aligned_cols=262  Identities=11%  Similarity=-0.058  Sum_probs=193.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 040048          278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALG----------RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE  347 (608)
Q Consensus       278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~  347 (608)
                      +..++|+.+++++++.+|++..+|..++.++..++          ++++|+.+++++++.+|++..+|+.+|.++...++
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            34589999999999999999999988887766544          47899999999999999999999999999888765


Q ss_pred             --HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048          348 --VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ  425 (608)
Q Consensus       348 --~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~  425 (608)
                        +++|+..+.+++. .+|..                                        ....+...|.++...+.++
T Consensus       123 ~~~~~a~~~~~~al~-~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1         123 PNWARELELCARFLE-ADERN----------------------------------------FHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             CCHHHHHHHHHHHHH-HCTTC----------------------------------------HHHHHHHHHHHHHTCCCHH
T ss_pred             ccHHHHHHHHHHHHh-hCchh----------------------------------------hhhhhhHHHHHHHhccccH
Confidence              7788888887776 55554                                        2333445566666777777


Q ss_pred             HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 040048          426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNG  505 (608)
Q Consensus       426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg  505 (608)
                      +|+..+++++..+|.+          ..+|..+|.++...|++++|+..+.+++.+.|.....                .
T Consensus       162 ~Al~~~~~~i~~~p~~----------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------~  215 (334)
T d1dcea1         162 EELAFTDSLITRNFSN----------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL----------------V  215 (334)
T ss_dssp             HHHHHHHTTTTTTCCC----------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHH----------------H
T ss_pred             HHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHH----------------H
Confidence            7777777777777764          6677777777777777777776666666665543332                2


Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS  585 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A  585 (608)
                      ..+...+..+++...|.+++..+|.....+..+|.++...|++++|+..|.+++..+|++..++..+|.+|..+|++++|
T Consensus       216 ~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA  295 (334)
T d1dcea1         216 QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET  295 (334)
T ss_dssp             HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH
T ss_pred             HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHH
Confidence            33444566667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHh
Q 040048          586 MQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       586 ~~~~~~al~l~P~~~~~~~~L  606 (608)
                      +++|+++++++|.+...+..|
T Consensus       296 ~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         296 LQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHCcccHHHHHHH
Confidence            777777777777777666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.4e-22  Score=197.60  Aligned_cols=211  Identities=13%  Similarity=-0.006  Sum_probs=193.0

Q ss_pred             HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhCCCCCchhHHH
Q 040048          291 ISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE-VEKAIYHFKHAGPEADQVDIAK  369 (608)
Q Consensus       291 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~p~~~~~  369 (608)
                      |..+|+...++..+|.++...+.+++|+.+++++|+++|++..+|+.+|.++..+|. +++|+..+++++. ++|.+   
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~-~~p~~---  111 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPKN---  111 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTTC---
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHhh---
Confidence            556788888999999999999999999999999999999999999999999999874 8999999988876 55544   


Q ss_pred             HHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048          370 AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI  449 (608)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~  449 (608)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (315)
T d2h6fa1         112 --------------------------------------------------------------------------------  111 (315)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 040048          450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP  529 (608)
Q Consensus       450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p  529 (608)
                        ..+|..+|.++..+|++++|+..+.++++++|.+..+|.            .+|.++...|++++|+.+|+++++++|
T Consensus       112 --~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~------------~~~~~~~~~~~~~~Al~~~~~al~~~p  177 (315)
T d2h6fa1         112 --YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ------------HRQWVIQEFKLWDNELQYVDQLLKEDV  177 (315)
T ss_dssp             --HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             --hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHHCC
Confidence              788899999999999999999999999999999999987            899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048          530 YNSVLLCNRAACRSKLGQ------FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       530 ~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  600 (608)
                      .+..+|+++|.++...+.      +++|+..+.++++++|++..+|..++.++...| ..++.+.+++++++.|+..
T Consensus       178 ~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~  253 (315)
T d2h6fa1         178 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS  253 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCC
T ss_pred             ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcC
Confidence            999999999999998887      689999999999999999999999999876554 6889999999999988753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.6e-20  Score=184.74  Aligned_cols=292  Identities=15%  Similarity=0.017  Sum_probs=224.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-----SYRSNKTAALIALGRLLEAVFECREAIRIEPHY-----  331 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----  331 (608)
                      ..++.....|.+++..|++++|+.+|+++++..|.+.     .++..+|.++...|++++|+..|++++++.+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3567778888888888999999999998888888763     467788888888888888888888888765433     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048          332 -HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI  410 (608)
Q Consensus       332 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  410 (608)
                       ..++..++.++...|++..|...+.+++. +.+..                                 ...........
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-~~~~~---------------------------------~~~~~~~~~~~  135 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQ---------------------------------HLEQLPMHEFL  135 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHT---------------------------------TCTTSTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhc---------------------------------ccchhhHHHHH
Confidence             24567778888888888888888777654 22111                                 00001112345


Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM  490 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  490 (608)
                      +..+|.++...|+++.|...+.+++...+......     ....+...+..+...+++.++...+.++............
T Consensus       136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~  210 (366)
T d1hz4a_         136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-----QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD  210 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-----GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc
Confidence            66778888899999999988888776655432222     3778888999999999999999999999886654322111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 040048          491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----  561 (608)
Q Consensus       491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----  561 (608)
                           .....+..+|.++...|++++|...+++++...+.+    ...+.++|.++...|++++|+..+++++..     
T Consensus       211 -----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  285 (366)
T d1hz4a_         211 -----WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR  285 (366)
T ss_dssp             -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc
Confidence                 012234578999999999999999999999987654    467788999999999999999999999854     


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          562 -RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       562 -~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P  597 (608)
                       .|....++..+|.+|..+|++++|++.|++++++.+
T Consensus       286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         286 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence             355578899999999999999999999999998754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.4e-21  Score=195.26  Aligned_cols=264  Identities=7%  Similarity=-0.069  Sum_probs=226.0

Q ss_pred             hhHHHHhh--hCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC--HHH
Q 040048          251 PTSLCRAL--STRMDPETLKIMGNEDYK----------AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR--LLE  316 (608)
Q Consensus       251 a~~~~~~~--~~~~~~~~~~~lg~~~~~----------~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~e  316 (608)
                      |...+..+  ..|.++.+|..++.++..          .|++++|+.+|++++..+|++..+|+.+|.++...++  +++
T Consensus        48 al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~  127 (334)
T d1dcea1          48 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR  127 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHH
Confidence            44444444  358888888777766554          4458999999999999999999999999999988765  899


Q ss_pred             HHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHH
Q 040048          317 AVFECREAIRIEPHYHRAH-HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE  395 (608)
Q Consensus       317 A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  395 (608)
                      |+..+.++++++|.+..++ ..+|.++...+.+++|+..+++++. .+|.+                             
T Consensus       128 a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~-~~p~~-----------------------------  177 (334)
T d1dcea1         128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNFSN-----------------------------  177 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-TTCCC-----------------------------
T ss_pred             HHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH-cCCCC-----------------------------
Confidence            9999999999999998886 5677899999999999999999999 88877                             


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI  475 (608)
Q Consensus       396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  475 (608)
                                  ..++..+|.++..+|++++|+..+.+++...|..              ......+...+..+++...+
T Consensus       178 ------------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~a~~~~  231 (334)
T d1dcea1         178 ------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE--------------LELVQNAFFTDPNDQSAWFY  231 (334)
T ss_dssp             ------------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH--------------HHHHHHHHHHCSSCSHHHHH
T ss_pred             ------------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH--------------HHHHHHHHHhcchhHHHHHH
Confidence                        4678888999999999999888888887765542              22344556678888999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDC  555 (608)
Q Consensus       476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  555 (608)
                      .+++...|.....+.            .+|.++...+++.+|+..+.+++..+|.+..++..+|.++..+|++++|+++|
T Consensus       232 ~~~l~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         232 HRWLLGRAEPLFRCE------------LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             HHHHHSCCCCSSSCC------------CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             HHHHHhCcchhhHHH------------HHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999887765            78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048          556 NAALNVRPGYSKARLRRADCFAKIEKW  582 (608)
Q Consensus       556 ~~al~~~p~~~~a~~~la~~~~~~g~~  582 (608)
                      +++++++|.....|..|+..+.....+
T Consensus       300 ~~ai~ldP~~~~y~~~L~~~~~~e~~~  326 (334)
T d1dcea1         300 STLKAVDPMRAAYLDDLRSKFLLENSV  326 (334)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence            999999999999999998888754333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.4e-20  Score=181.79  Aligned_cols=103  Identities=18%  Similarity=0.081  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      .+.+++.+|.+|...|++++|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+|.+|
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence            46688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchh
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      ..+|++++|+..|+++++ .+|.+
T Consensus       116 ~~~g~~~~A~~~~~~al~-~~p~~  138 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQ-DDPND  138 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHH-HCTTC
T ss_pred             HHHhhHHHHHHHHHHHHh-hcccc
Confidence            999999999999988877 66655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.8e-20  Score=178.71  Aligned_cols=226  Identities=15%  Similarity=0.024  Sum_probs=137.8

Q ss_pred             CCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048          278 GNFAEALALYDAAISIDP----NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY  353 (608)
Q Consensus       278 g~~~~Al~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  353 (608)
                      .+++.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            356678888888887543    3466899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhc
Q 040048          354 HFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN  433 (608)
Q Consensus       354 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~  433 (608)
                      .|++++. ++|++                                         +.++..+|.++..+|++++|+..|++
T Consensus        93 ~~~~al~-~~p~~-----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          93 AFDSVLE-LDPTY-----------------------------------------NYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             HHHHHHH-HCTTC-----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhHHHH-HHhhh-----------------------------------------hhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999987 66665                                         23444445555555555555555555


Q ss_pred             CCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 040048          434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAK  513 (608)
Q Consensus       434 al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~  513 (608)
                      +++.+|.+          ......++..+...+..+.+...........+....... .        ...++. ....+.
T Consensus       131 al~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~-~~~~~~  190 (259)
T d1xnfa_         131 FYQDDPND----------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-V--------EFYLGN-ISEQTL  190 (259)
T ss_dssp             HHHHCTTC----------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-H--------HHHTTS-SCHHHH
T ss_pred             HHhhcccc----------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-H--------HHHHHH-HHHHHH
Confidence            55444442          333444444444444444444433333333333322110 0        000000 111222


Q ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          514 FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       514 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      ++.+...+...+...|....+++++|.+|..+|++++|+.+|++++..+|++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            3344444444444444445555555555555555555555555555555554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.6e-19  Score=181.34  Aligned_cols=300  Identities=14%  Similarity=-0.011  Sum_probs=222.7

Q ss_pred             CCCCcchhHHHHhhhC--CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHc
Q 040048          245 SSSSAEPTSLCRALST--RMD-----PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK------ASYRSNKTAALIAL  311 (608)
Q Consensus       245 ~~~~~~a~~~~~~~~~--~~~-----~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~  311 (608)
                      .|..++|..+++..+.  |.+     ..++..+|.+++..|++++|+..|++++.+.+..      ..++..++.++...
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  104 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            4556677777776543  333     3578899999999999999999999999875443      35678899999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048          312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT  391 (608)
Q Consensus       312 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (608)
                      |++..|+..+.+++.+.+...                          .. ..+..      ...+..++.++...++++.
T Consensus       105 ~~~~~a~~~~~~al~~~~~~~--------------------------~~-~~~~~------~~~~~~la~~~~~~~~~~~  151 (366)
T d1hz4a_         105 GFLQTAWETQEKAFQLINEQH--------------------------LE-QLPMH------EFLVRIRAQLLWAWARLDE  151 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT--------------------------CT-TSTHH------HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhcc--------------------------cc-hhhHH------HHHHHHHHHHHHHhcchhh
Confidence            999999999998876432110                          00 11111      3345566778888899999


Q ss_pred             HHHHHHHHHHcCCC----ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048          392 LIQETRAAIAGGAD----SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR  467 (608)
Q Consensus       392 A~~~~~~al~~~~~----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~  467 (608)
                      +...+.+++...+.    .....+...+..+...+++.++...+.++...........   .....++..++.++...|+
T Consensus       152 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  228 (366)
T d1hz4a_         152 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS---DWISNANKVRVIYWQMTGD  228 (366)
T ss_dssp             HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH---HHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC---chHHHHHHHHHHHHHhccc
Confidence            99999999876543    2345677788999999999999888776654332211100   0125677889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHH
Q 040048          468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL------DPYNSVLLCNRAAC  541 (608)
Q Consensus       468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~la~~  541 (608)
                      +++|...+++++...+.+.....        ..+..+|.++...|++++|+..+++++..      .|....++..+|.+
T Consensus       229 ~~~a~~~~~~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  300 (366)
T d1hz4a_         229 KAAAANWLRHTAKPEFANNHFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL  300 (366)
T ss_dssp             HHHHHHHHHHSCCCCCTTCGGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccchHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence            99999999999988876644321        12347899999999999999999999843      45567899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          542 RSKLGQFEKAIEDCNAALNVRPG---------YSKARLRRADCFAKIEKWEASMQD  588 (608)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~  588 (608)
                      |...|++++|++.|++++++.+.         ....+..+...+...++.+++...
T Consensus       301 ~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         301 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99999999999999999987432         233444555566667777777654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-16  Score=133.11  Aligned_cols=108  Identities=27%  Similarity=0.497  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      .+...|..++..|+|++|+.+|+++++.+|.++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          580 EKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      |++++|+..|+++++++|++++++..|.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999988764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.9e-17  Score=175.37  Aligned_cols=228  Identities=9%  Similarity=-0.019  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC
Q 040048          282 EALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE  361 (608)
Q Consensus       282 ~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  361 (608)
                      +|+++|++|+++.|+.+.+++++|.++...|++++|   |++++.++|+....+...+.+..  ..|..+++.+++.+..
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999886   88999999877666543333321  2245667777766541


Q ss_pred             C-CchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048          362 A-DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD  440 (608)
Q Consensus       362 ~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  440 (608)
                      . .++...    .. ...++.+....+.|+.++..+.+++..+|+. ...+..+|..+...+++++|+..+.+++..++ 
T Consensus        79 ~~~~~~~~----~~-~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-  151 (497)
T d1ya0a1          79 RANPNRSE----VQ-ANLSLFLEAASGFYTQLLQELCTVFNVDLPC-RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-  151 (497)
T ss_dssp             SSCTTTTH----HH-HHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH-
T ss_pred             ccCccHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHCCChhh-HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-
Confidence            1 111110    00 0112223334455555555555555554443 23445555555555555555555555544332 


Q ss_pred             ccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 040048          441 ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAA  520 (608)
Q Consensus       441 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~  520 (608)
                                 ..++..+|.++...|++++|+.+|++++.++|++...+.            .+|.++...|++.+|+.+
T Consensus       152 -----------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~------------~Lg~~~~~~~~~~~A~~~  208 (497)
T d1ya0a1         152 -----------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN------------QLAILASSKGDHLTTIFY  208 (497)
T ss_dssp             -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHH------------HHHHHHHHTTCHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHH------------HHHHHHHHcCCHHHHHHH
Confidence                       344555555555555555555555555555555555544            555555555555555555


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHH
Q 040048          521 YGDGLGLDPYNSVLLCNRAACRSK  544 (608)
Q Consensus       521 ~~~al~~~p~~~~~~~~la~~~~~  544 (608)
                      |.+++..+|..+.++.+|+.++.+
T Consensus       209 y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         209 YCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHH
Confidence            555555555555555555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3.4e-16  Score=153.72  Aligned_cols=225  Identities=11%  Similarity=0.061  Sum_probs=157.3

Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIE------PHYHRAHHRLANLYLRLGEVEKAI  352 (608)
Q Consensus       279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~  352 (608)
                      +|++|.++|.++              |.+|..+|+|++|+.+|.+++++.      +....++..+|.+|..+|++++|+
T Consensus        32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~   97 (290)
T d1qqea_          32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (290)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            466676666654              777888888888888888888763      122456777777887788888777


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048          353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK  432 (608)
Q Consensus       353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~  432 (608)
                      ..|++++. +                                                       +...+++..+     
T Consensus        98 ~~~~~a~~-~-------------------------------------------------------~~~~~~~~~~-----  116 (290)
T d1qqea_          98 DSLENAIQ-I-------------------------------------------------------FTHRGQFRRG-----  116 (290)
T ss_dssp             HHHHHHHH-H-------------------------------------------------------HHHTTCHHHH-----
T ss_pred             HHHHHhhH-H-------------------------------------------------------hhhcccchhH-----
Confidence            77777654 1                                                       1111221111     


Q ss_pred             cCCCCCCcccccccCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 040048          433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLA-CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ  511 (608)
Q Consensus       433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~  511 (608)
                                         ..++..+|.++.. .|++++|+.+|++++++.+.......      ....+..+|.++...
T Consensus       117 -------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~------~~~~~~~la~~~~~~  171 (290)
T d1qqea_         117 -------------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL------SNKCFIKCADLKALD  171 (290)
T ss_dssp             -------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHT
T ss_pred             -------------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhh------hhhHHHHHHHHHHHc
Confidence                               4566677877755 69999999999999876543322111      123456899999999


Q ss_pred             CCHHHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHH-
Q 040048          512 AKFSEAAAAYGDGLGLDPYNS-------VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA-----RLRRADCFAK-  578 (608)
Q Consensus       512 g~~~eA~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~la~~~~~-  578 (608)
                      |+|++|+.+|++++...+...       ..+...|.++...|+++.|...|+++++++|.....     ...+..++.. 
T Consensus       172 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~  251 (290)
T d1qqea_         172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG  251 (290)
T ss_dssp             TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhc
Confidence            999999999999999877653       567789999999999999999999999999876543     3445555544 


Q ss_pred             -cCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048          579 -IEKWEASMQDYEILKKEAPDDEEVD  603 (608)
Q Consensus       579 -~g~~~~A~~~~~~al~l~P~~~~~~  603 (608)
                       .+.+++|+..|.++.+++|....+.
T Consensus       252 d~e~~~eai~~y~~~~~lD~~~~~~L  277 (290)
T d1qqea_         252 DSEQLSEHCKEFDNFMRLDKWKITIL  277 (290)
T ss_dssp             CTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence             3569999999998888876544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-15  Score=134.29  Aligned_cols=111  Identities=24%  Similarity=0.422  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                      ..+..+...|..++..|+|++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+|..+|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          576 FAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       576 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      +..+|++++|+.+|+++++++|++.+++..+
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9999999999999999999999999987665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.6e-15  Score=124.71  Aligned_cols=114  Identities=21%  Similarity=0.215  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +.-+...|..++..|++++|+..|.++++.+|.++.++.            .+|.++...|++++|+..|++++.++|++
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS------------NRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhh------------cccccccccccccccchhhhhHHHhccch
Confidence            445677999999999999999999999999999999886            89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA  577 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~  577 (608)
                      +.+|+++|.++..+|++++|+.+|+++++++|+++.++..++.+..
T Consensus        71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999988753

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.7e-14  Score=138.74  Aligned_cols=223  Identities=10%  Similarity=-0.004  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH
Q 040048          280 FAEALALYDAAISIDPNKASYRSNKTAALIAL--------------GRLLEAVFECREAIRI-EPHYHRAHHRLANLYLR  344 (608)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~-~p~~~~~~~~la~~~~~  344 (608)
                      .+.+...|++|+...|.++.+|+..+..+...              +..++|...|++++.. .|.+...|..++.++..
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45677788899988888888888877655432              2346777777777763 56677777777777777


Q ss_pred             cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048          345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH  424 (608)
Q Consensus       345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~  424 (608)
                      .|++++|...|++++. ..|.+                                        ...+|...+......+++
T Consensus       112 ~~~~~~a~~i~~~~l~-~~~~~----------------------------------------~~~~w~~~~~~~~~~~~~  150 (308)
T d2onda1         112 RMKYEKVHSIYNRLLA-IEDID----------------------------------------PTLVYIQYMKFARRAEGI  150 (308)
T ss_dssp             TTCHHHHHHHHHHHHT-SSSSC----------------------------------------THHHHHHHHHHHHHHHCH
T ss_pred             cccHHHHHHHHHHHHH-HhcCC----------------------------------------hHHHHHHHHHHHHHcCCh
Confidence            7777777777777765 44433                                        122344444444444555


Q ss_pred             HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048          425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL-ACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS  503 (608)
Q Consensus       425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  503 (608)
                      +.|..+|+++++..|..          ...+...|.... ..|+.+.|...|++++...|++...|.            .
T Consensus       151 ~~ar~i~~~al~~~~~~----------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~------------~  208 (308)
T d2onda1         151 KSGRMIFKKAREDARTR----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL------------A  208 (308)
T ss_dssp             HHHHHHHHHHHTSTTCC----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH------------H
T ss_pred             HHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHH------------H
Confidence            55555555555544442          344444444432 235555555555555555555555554            4


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          504 NGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       504 lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      .+..+...|+++.|..+|++++...|.+    ..+|..........|+.+.+.++++++.+..|+.
T Consensus       209 y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            4555555555555555555555544422    2344444444455555555555555555555544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=3.6e-15  Score=146.25  Aligned_cols=221  Identities=15%  Similarity=0.085  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISID------PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------  331 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------  331 (608)
                      ++.|...|++|...|+|++|+.+|.+++++.      +....++..+|.||..+|++++|+.+|++++++.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            4678889999999999999999999999873      2234679999999999999999999999999976544      


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048          332 HRAHHRLANLYLR-LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI  410 (608)
Q Consensus       332 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  410 (608)
                      ..++..+|.+|.. .|++++|+..|++++. +.+........                                   ..+
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~-l~~~~~~~~~~-----------------------------------~~~  160 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGE-WYAQDQSVALS-----------------------------------NKC  160 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHTTCHHHH-----------------------------------HHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHH-HHHhcCchhhh-----------------------------------hhH
Confidence            5678889988865 6999999999999875 33222111111                                   234


Q ss_pred             HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048          411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM  490 (608)
Q Consensus       411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  490 (608)
                      +..+|.++..+|+|++|+..|++++...+.......   .....+...+.++...|++..|...++++++++|.......
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre  237 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW---SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE  237 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh---hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH
Confidence            566677777777777777777776665554322111   12456677888888999999999999999888876554321


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCC
Q 040048          491 VMRKAKGVAAARSNGNALFK--QAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       491 ~l~~~~~~~~~~~lg~~~~~--~g~~~eA~~~~~~al~~~p~  530 (608)
                      .       ..+..+..++..  .+.+++|+..|.++.+++|.
T Consensus       238 ~-------~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         238 S-------NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             H-------HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             H-------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence            0       111244444443  45689999999988888653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-14  Score=128.51  Aligned_cols=127  Identities=20%  Similarity=0.274  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..+...|..++..|+|++|+.+|+++++++|++..++.            .+|.++...|++++|+..|+++++++|++
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG------------NRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhh------------hhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            677888999999999999999999999999999999886            99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHH
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA--KIEKWEASMQDYE  590 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~~g~~~~A~~~~~  590 (608)
                      ..+|..+|.++..+|++++|+.+|++++.++|++..++..++.+..  ..+.+++|+...+
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~  138 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  138 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            9999999999999999999999999999999999999988887754  4455666665433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-14  Score=131.74  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN  531 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  531 (608)
                      +..++..|..+...|+|++|+..|.++   .+.++.++.            ++|.++..+|++++|+.+|+++++++|++
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~------------nlG~~~~~~g~~~~A~~~~~kAl~ldp~~   69 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICF------------NIGCMYTILKNMTEAEKAFTRSINRDKHL   69 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHH------------HHHHHHHHcCCchhHHHHHHHHHHHhhhh
Confidence            334556899999999999999999864   555666654            99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY----------------SKARLRRADCFAKIEKWEASMQDYEILKKE  595 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~a~~~la~~~~~~g~~~~A~~~~~~al~l  595 (608)
                      +.+|+++|.++.++|++++|+..|++++...+.+                ..+++++|.++..+|++++|++.|++++++
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999875542                478899999999999999999999999999


Q ss_pred             CCCC
Q 040048          596 APDD  599 (608)
Q Consensus       596 ~P~~  599 (608)
                      .|+.
T Consensus       150 ~~~~  153 (192)
T d1hh8a_         150 KSEP  153 (192)
T ss_dssp             CCSG
T ss_pred             CCCc
Confidence            8874

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-16  Score=168.38  Aligned_cols=231  Identities=11%  Similarity=-0.001  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHH
Q 040048          315 LEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQ  394 (608)
Q Consensus       315 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  394 (608)
                      -+|+++|++|+++.|+.++++..+|.++...|++++|   |++++. .+|+.......        ........+..+++
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~-~dp~~a~~~~~--------e~~Lw~~~y~~~ie   70 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLV-TDLEYALDKKV--------EQDLWNHAFKNQIT   70 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH-HCHHHHHHHTH--------HHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH-cChhhHHHHhH--------HHHHHHHHHHHHHH
Confidence            3799999999999999999999999999999999887   788887 77765322111        11111234566777


Q ss_pred             HHHHHHHcC--CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 040048          395 ETRAAIAGG--ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL  472 (608)
Q Consensus       395 ~~~~al~~~--~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  472 (608)
                      .++..++..  ++........++.+....+.|+.|+..+.+++.++|++          ...+..+|.++...|++++|+
T Consensus        71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~----------~~~~~~lg~~~~~~~~~~~A~  140 (497)
T d1ya0a1          71 TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC----------RVKSSQLGIISNKQTHTSAIV  140 (497)
T ss_dssp             HHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------
T ss_pred             HHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh----------HHHHHHhHHHHHhCCCHHHHH
Confidence            888777654  33333344456677778899999999999999998875          778889999999999999999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI  552 (608)
Q Consensus       473 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  552 (608)
                      ..+.+++..++.  .+            +..+|.++...|++++|+.+|++|+.++|+++.+|++||.++...|++.+|+
T Consensus       141 ~~~~~al~~~~~--~~------------~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~  206 (497)
T d1ya0a1         141 KPQSSSCSYICQ--HC------------LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             --CCHHHHHHHH--HH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhCCCHH--HH------------HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            999999887653  22            2489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          553 EDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      .+|.+++...|.++.++.+|+.++.+..+
T Consensus       207 ~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         207 FYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998876543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4.6e-15  Score=136.60  Aligned_cols=101  Identities=30%  Similarity=0.486  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      .+...|..++..|+|++|+..|++++.++|.++.+|+++|.+|..+|++++|+.+|++|++++|+++.+|+++|.+|..+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 040048          580 EKWEASMQDYEILKKEAPDDE  600 (608)
Q Consensus       580 g~~~~A~~~~~~al~l~P~~~  600 (608)
                      |++++|+.+|+++++++|++.
T Consensus        86 ~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          86 ESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999988644

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-13  Score=126.04  Aligned_cols=128  Identities=13%  Similarity=0.079  Sum_probs=115.6

Q ss_pred             HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048          413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM  492 (608)
Q Consensus       413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  492 (608)
                      ..|..+...|+|++|++.|.++..  +           ++.+++++|.+|..+|++++|+..|+++++++|++..++.  
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i~~--~-----------~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~--   74 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAVQD--P-----------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF--   74 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSSS--C-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred             HHHHHHHHCCCHHHHHHHHHhcCC--C-----------CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHH--
Confidence            458999999999999999997632  2           2788999999999999999999999999999999999886  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048          493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----------------SVLLCNRAACRSKLGQFEKAIEDCN  556 (608)
Q Consensus       493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~  556 (608)
                                ++|.++..+|++++|+..|++++...+.+                ..+++++|.++..+|++++|++.|.
T Consensus        75 ----------~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~  144 (192)
T d1hh8a_          75 ----------QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  144 (192)
T ss_dssp             ----------HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----------HHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                      99999999999999999999999764432                4788999999999999999999999


Q ss_pred             HHHhcCCCC
Q 040048          557 AALNVRPGY  565 (608)
Q Consensus       557 ~al~~~p~~  565 (608)
                      +++.+.|+.
T Consensus       145 ~A~~~~~~~  153 (192)
T d1hh8a_         145 LATSMKSEP  153 (192)
T ss_dssp             HHHTTCCSG
T ss_pred             HHHhcCCCc
Confidence            999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=9.4e-15  Score=134.47  Aligned_cols=104  Identities=24%  Similarity=0.370  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL  341 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~  341 (608)
                      ++++.+...|+.++..|+|++|+.+|+++|.++|+++.+|.++|.||..+|++++|+.+|+++++++|+++.+|+.+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhCCCCCchh
Q 040048          342 YLRLGEVEKAIYHFKHAGPEADQVD  366 (608)
Q Consensus       342 ~~~~g~~~~A~~~~~~al~~~~p~~  366 (608)
                      |..+|++++|+..|++++. ++|++
T Consensus        82 ~~~l~~~~~A~~~~~~al~-l~p~~  105 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYS-LAKEQ  105 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-HHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHH-hCccc
Confidence            9999999999999999987 66654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.8e-14  Score=126.18  Aligned_cols=113  Identities=24%  Similarity=0.399  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---------------SVLLCNRAACRSKLGQFEKAIEDCNAAL  559 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al  559 (608)
                      +..+..+...|..++..|+|++|+.+|++++...|..               ..++.++|.||.++|++++|+.+++++|
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            3445666789999999999999999999999886643               3567889999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      .++|+++.+++.+|.+|..+|++++|+.+|+++++++|+|+.+...|.
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~  137 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  137 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999987663

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.54  E-value=8.3e-14  Score=122.26  Aligned_cols=112  Identities=18%  Similarity=0.238  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----------------SVLLCNRAACRSKLGQFEKAIEDCNAAL  559 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al  559 (608)
                      ..+..+...|..++..|+|.+|+..|.+++...+..                ..++.++|.+|.++|++++|+.+|++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            345566789999999999999999999999875532                2467899999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +++|++..+|+++|.+|..+|++++|+.+|+++++++|+|.++...|.
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999987663

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2e-13  Score=122.08  Aligned_cols=135  Identities=21%  Similarity=0.237  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM---VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD  528 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  528 (608)
                      +..+...|..++..|+|++|+..|++++...|.......   ..........+.++|.+|.+.|++++|+.++++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            677788999999999999999999999998876542111   01111224456789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM  586 (608)
Q Consensus       529 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  586 (608)
                      |+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+...++.+....+...+..
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988877766543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.50  E-value=9.8e-12  Score=119.33  Aligned_cols=230  Identities=17%  Similarity=0.169  Sum_probs=151.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVFECREAIRIEPHYHRAHHRL  338 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l  338 (608)
                      ||++++.+|..++..+++++|+.+|+++.+.  ++..+++.+|.+|..    ..++..|..+++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            6889999999999999999999999999875  578899999999987    67899999999988754  467888888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 040048          339 ANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ  414 (608)
Q Consensus       339 a~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l  414 (608)
                      |.++..    ..+.+.|+..++++.. ..+.                                           .....+
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~-~g~~-------------------------------------------~a~~~l  112 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACD-LKYA-------------------------------------------EGCASL  112 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHH-TTCH-------------------------------------------HHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhh-hhhh-------------------------------------------hHHHhh
Confidence            887765    3566667766666543 1111                                           111122


Q ss_pred             HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048          415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK  494 (608)
Q Consensus       415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  494 (608)
                      +..+....                                        ........|+..+.+...  +.+...+.    
T Consensus       113 ~~~~~~~~----------------------------------------~~~~~~~~a~~~~~~~~~--~~~~~~~~----  146 (265)
T d1ouva_         113 GGIYHDGK----------------------------------------VVTRDFKKAVEYFTKACD--LNDGDGCT----  146 (265)
T ss_dssp             HHHHHHCS----------------------------------------SSCCCHHHHHHHHHHHHH--TTCHHHHH----
T ss_pred             cccccCCC----------------------------------------cccchhHHHHHHhhhhhc--ccccchhh----
Confidence            22221100                                        012234445555554433  22233332    


Q ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCH
Q 040048          495 AKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYS  566 (608)
Q Consensus       495 ~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~  566 (608)
                              .+|.++..    ..+...+..+++.+.+.  .++.+++++|.+|..    ..++++|+.+|+++.+.  .++
T Consensus       147 --------~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~  214 (265)
T d1ouva_         147 --------ILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENG  214 (265)
T ss_dssp             --------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             --------hhhhhhccCCCcccccccchhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCH
Confidence                    55566554    34556666666666643  467777777777766    55777777777777766  457


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 040048          567 KARLRRADCFAK----IEKWEASMQDYEILKKEAPD  598 (608)
Q Consensus       567 ~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~  598 (608)
                      .+++.||.+|..    ..++++|+++|+++.+....
T Consensus       215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            777777777765    33677777777777776543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.49  E-value=2.3e-13  Score=121.43  Aligned_cols=112  Identities=23%  Similarity=0.397  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048          496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---------------SVLLCNRAACRSKLGQFEKAIEDCNAALN  560 (608)
Q Consensus       496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~  560 (608)
                      ..+..+...|..++..|+|.+|+..|.+++...+..               ..++.++|.||..+|++++|+.++++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            345566789999999999999999999999753321               35678899999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          561 VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       561 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      ++|++..+++++|.+|..+|++++|+.+|+++++++|+++++...|.
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~  139 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIF  139 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999877653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=9.7e-14  Score=114.78  Aligned_cols=92  Identities=16%  Similarity=0.071  Sum_probs=89.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      +.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..+|+.+|.+|..+|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 040048          582 WEASMQDYEILK  593 (608)
Q Consensus       582 ~~~A~~~~~~al  593 (608)
                      +++|+++|++.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999976

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=9.1e-14  Score=114.95  Aligned_cols=94  Identities=16%  Similarity=0.064  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048          266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL  345 (608)
Q Consensus       266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~  345 (608)
                      .++.+|..++..|++++|+.+|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..+|+.+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhC
Q 040048          346 GEVEKAIYHFKHAG  359 (608)
Q Consensus       346 g~~~~A~~~~~~al  359 (608)
                      |++++|++.+++.|
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-13  Score=115.96  Aligned_cols=108  Identities=26%  Similarity=0.354  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS-------KARL  570 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~  570 (608)
                      +..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|+|++|+.+|+++++++|++.       .+|.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            445668999999999999999999999999999999999999999999999999999999999988764       5677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          571 RRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       571 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .+|.++..++++++|+.+|++++..+|+ +++...+
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            8888999999999999999999999885 4444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=2.7e-13  Score=121.09  Aligned_cols=106  Identities=25%  Similarity=0.503  Sum_probs=98.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcC----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGL----------------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY  565 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  565 (608)
                      ...|..++..|+|.+|+..|.+++..                +|....++.++|.++.++|++++|+..|+++++++|++
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  110 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  110 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence            47789999999999999999999863                44556788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          566 SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       566 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      +.+|+++|.+|..+|++++|+..|+++++++|++.++...|.
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999887663

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.46  E-value=1.8e-12  Score=115.56  Aligned_cols=143  Identities=21%  Similarity=0.244  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV---NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD  528 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  528 (608)
                      +..+...|..++..|+|.+|+..|.+++...+.....   .........+..+.++|.+|..+|++++|+..+++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            6778889999999999999999999999866554321   1111112234567789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 040048          529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA-SMQDYEILKK  594 (608)
Q Consensus       529 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~~~~~al~  594 (608)
                      |.+..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+....+.+.+ ..+.|.+.++
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999888776643 4455555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=6.6e-12  Score=123.61  Aligned_cols=209  Identities=10%  Similarity=-0.075  Sum_probs=171.2

Q ss_pred             CCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048          261 RMDPETLKIMGNEDYKA--------------GNFAEALALYDAAISI-DPNKASYRSNKTAALIALGRLLEAVFECREAI  325 (608)
Q Consensus       261 ~~~~~~~~~lg~~~~~~--------------g~~~~Al~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  325 (608)
                      |.+++.|+..+..+...              +.+++|...|++++.. .|.+...|..++.++...|++++|...|++++
T Consensus        47 ~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l  126 (308)
T d2onda1          47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL  126 (308)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            78899998887765433              4468999999999975 78888899999999999999999999999999


Q ss_pred             hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC
Q 040048          326 RIEPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA  404 (608)
Q Consensus       326 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  404 (608)
                      ...|.+ ..+|..++.+....|+++.|...|.+++. ..|..                                      
T Consensus       127 ~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~-~~~~~--------------------------------------  167 (308)
T d2onda1         127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTR--------------------------------------  167 (308)
T ss_dssp             TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-STTCC--------------------------------------
T ss_pred             HHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCc--------------------------------------
Confidence            999976 45789999999999999999999999987 66655                                      


Q ss_pred             CChHHHHHHHHHHH-HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048          405 DSAPQIYALQAEAL-LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS  483 (608)
Q Consensus       405 ~~~~~~~~~la~~~-~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  483 (608)
                         ...+...+... ...|+.+.|..+|++++...|++          ..+|...+..+...|+++.|..+|++++...|
T Consensus       168 ---~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~----------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         168 ---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI----------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             ---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             ---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence               23344444443 33467777888888888777764          89999999999999999999999999999887


Q ss_pred             CChH----HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 040048          484 NNKE----VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV  533 (608)
Q Consensus       484 ~~~~----~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~  533 (608)
                      .++.    +|.            .........|+.+.+..+++++.+..|....
T Consensus       235 ~~~~~~~~iw~------------~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         235 LPPEKSGEIWA------------RFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             SCGGGCHHHHH------------HHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             CChHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence            6653    333            5556667789999999999999998887644

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.7e-14  Score=116.27  Aligned_cols=104  Identities=11%  Similarity=0.053  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG---QFEKAIEDCNAALNVRPGY--SKARLRRADCFA  577 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~  577 (608)
                      .++..+...+++++|.+.|++++.++|.++.+++++|.++.+.+   ++++|+..|++++..+|..  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999999998754   5567999999999988765  568999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          578 KIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       578 ~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      .+|++++|+++|+++++++|++.++...+
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            99999999999999999999999987654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.44  E-value=1.5e-12  Score=113.94  Aligned_cols=130  Identities=15%  Similarity=0.145  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE----VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      +..+...|..++..|+|.+|+..|.+++...+....    ..........+..+.++|.+|.++|++++|+..|++++++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            566778999999999999999999999987664432    1111122233556789999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048          528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK  581 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~  581 (608)
                      +|.+..+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+..++++
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888766543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=1.1e-12  Score=117.19  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048          452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR----KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL  527 (608)
Q Consensus       452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  527 (608)
                      +..+...|..++..|+|++|+..|.+++...+..........    ....+..+.++|.++.++|+|++|+..|++++++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            445567899999999999999999999876443221111000    1123556779999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048          528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM  586 (608)
Q Consensus       528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  586 (608)
                      +|+++.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.++.......++.
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988777666553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7e-13  Score=110.93  Aligned_cols=111  Identities=12%  Similarity=0.059  Sum_probs=99.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHhhcCCCCC--
Q 040048          457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ---AKFSEAAAAYGDGLGLDPYN--  531 (608)
Q Consensus       457 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~---g~~~eA~~~~~~al~~~p~~--  531 (608)
                      .++..+...+++++|.+.|++++.++|+++.+..            ++|.++...   +++++|+.+|++++..+|..  
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~------------n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~   71 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH
Confidence            4677888999999999999999999999999886            899999874   45567999999999988755  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048          532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI  579 (608)
Q Consensus       532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~  579 (608)
                      ..+++++|.+|..+|++++|+++|+++++++|++..+...++.+..++
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999999999888877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-12  Score=110.31  Aligned_cols=101  Identities=26%  Similarity=0.419  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH-------RAHH  336 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~  336 (608)
                      +..+..+|+.++..|+|++|+.+|+++|+++|+++.++.++|.+|..+|+|++|+..|+++++++|++.       .++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999988764       4677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCCCCCch
Q 040048          337 RLANLYLRLGEVEKAIYHFKHAGPEADQV  365 (608)
Q Consensus       337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~  365 (608)
                      .+|.++..++++++|+.+|++++. .+++
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~-~~~~  111 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLA-EHRT  111 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-HCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHh-cCCC
Confidence            788888888999999999998876 4443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=6e-13  Score=115.34  Aligned_cols=102  Identities=15%  Similarity=0.196  Sum_probs=92.4

Q ss_pred             HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048          506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL----------GQFEKAIEDCNAALNVRPGYSKARLRRADC  575 (608)
Q Consensus       506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~  575 (608)
                      ..+.+.+.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456678899999999999999999999999999999854          456899999999999999999999999999


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048          576 FAKIEK-----------WEASMQDYEILKKEAPDDEEVDQALQ  607 (608)
Q Consensus       576 ~~~~g~-----------~~~A~~~~~~al~l~P~~~~~~~~L~  607 (608)
                      |..+|+           +++|+++|+++++++|++..++..|.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~  127 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  127 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHH
Confidence            988764           79999999999999999999988774

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.34  E-value=1.7e-12  Score=112.46  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=97.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHhhcCCCC
Q 040048          461 VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----------QAKFSEAAAAYGDGLGLDPY  530 (608)
Q Consensus       461 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----------~g~~~eA~~~~~~al~~~p~  530 (608)
                      .+.+++.|++|+..|+++++++|++..++.            .+|.++..          .+.+++|+..|+++++++|+
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~------------~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~   73 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLT------------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   73 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHH------------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence            356677899999999999999999999987            77888774          45568999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048          531 NSVLLCNRAACRSKLGQ-----------FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS  585 (608)
Q Consensus       531 ~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A  585 (608)
                      ++.+|+++|.+|..+|+           |++|+++|+++++++|++..++..|+.+....+.+.++
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988764           79999999999999999999999999886554444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7e-11  Score=93.86  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040048          262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA  334 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~  334 (608)
                      ..++.++.+|.+++..|+|.+|+.+|++|+++.|.+       ..++.++|.++..+|++++|+.+|+++++++|+++.+
T Consensus         3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            357889999999999999999999999999986543       5689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 040048          335 HHRLANLYLRL  345 (608)
Q Consensus       335 ~~~la~~~~~~  345 (608)
                      +.+++.+...+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998776544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.15  E-value=4.6e-11  Score=104.72  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=85.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhhcCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Q 040048          503 SNGNALFKQAKFSEAAAAYGDGLGLDPYN------------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------  564 (608)
Q Consensus       503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------  564 (608)
                      ..|..++..|+|++|+..|++++++.|..            +.+|.++|.+|..+|++++|+..+++++.+.|.      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            45889999999999999999999987653            468899999999999999999999999987432      


Q ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048          565 -----YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD  599 (608)
Q Consensus       565 -----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  599 (608)
                           ...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                 24578999999999999999999999999986644

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-10  Score=91.42  Aligned_cols=80  Identities=13%  Similarity=0.048  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048          500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPY-------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR  572 (608)
Q Consensus       500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  572 (608)
                      ..+.+|.+++..|+|++|+.+|++|+++.|.       .+.++.++|.++.++|++++|+.+|+++++++|+++.++.++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3458888888888888888888888876443       267888888888888888888888888888888888888888


Q ss_pred             HHHHHHc
Q 040048          573 ADCFAKI  579 (608)
Q Consensus       573 a~~~~~~  579 (608)
                      +.+...+
T Consensus        87 ~~~~~~l   93 (95)
T d1tjca_          87 KYFEYIM   93 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.08  E-value=1.1e-10  Score=102.13  Aligned_cols=110  Identities=16%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-----
Q 040048          455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP-----  529 (608)
Q Consensus       455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-----  529 (608)
                      ++..|..++..|+|++|+..|++++++.|+.++..........+..|.++|.+|..+|++++|+..+++++.+.|     
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            334488899999999999999999999988764321111112244677999999999999999999999997643     


Q ss_pred             --C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048          530 --Y----NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG  564 (608)
Q Consensus       530 --~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  564 (608)
                        .    ...+++++|.+|..+|++++|+..|++++++.|.
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence              1    2447899999999999999999999999998654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.05  E-value=6.3e-08  Score=91.96  Aligned_cols=199  Identities=13%  Similarity=0.056  Sum_probs=146.1

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHH
Q 040048          297 KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKS  372 (608)
Q Consensus       297 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~  372 (608)
                      +|.+++.+|..+...+++++|+++|+++.+.  .+..+++.||.+|..    ..++..|..++..+..   ..       
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~---~~-------   68 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD---LN-------   68 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT-------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc---cc-------
Confidence            4678888999999999999999999998764  578888889988876    4566777666666533   00       


Q ss_pred             HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048          373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNA  452 (608)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~  452 (608)
                                                                                                    ++
T Consensus        69 ------------------------------------------------------------------------------~~   70 (265)
T d1ouva_          69 ------------------------------------------------------------------------------YS   70 (265)
T ss_dssp             ------------------------------------------------------------------------------CH
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          13


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHh
Q 040048          453 NLLVVRAQVNLA----CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDG  524 (608)
Q Consensus       453 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~a  524 (608)
                      .+...+|.++..    ..+.+.|+..++.+....+.  ....            .+|..+..    ......|+..+.+.
T Consensus        71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~------------~l~~~~~~~~~~~~~~~~a~~~~~~~  136 (265)
T d1ouva_          71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCA------------SLGGIYHDGKVVTRDFKKAVEYFTKA  136 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHH------------HHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             chhhccccccccccccchhhHHHHHHHhhhhhhhhh--hHHH------------hhcccccCCCcccchhHHHHHHhhhh
Confidence            344444544443    45678888888888776443  2222            45555554    55678888888887


Q ss_pred             hcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 040048          525 LGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEA  596 (608)
Q Consensus       525 l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~  596 (608)
                      ...  .+...+..+|.++..    ..+...+..+++.+.+  +.++.+.+.+|.+|..    ..++++|+.+|+++.+..
T Consensus       137 ~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g  212 (265)
T d1ouva_         137 CDL--NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  212 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             hcc--cccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence            664  567889999999987    4567888889998876  4689999999999988    679999999999999874


Q ss_pred             CCCHHHHHH
Q 040048          597 PDDEEVDQA  605 (608)
Q Consensus       597 P~~~~~~~~  605 (608)
                        ++.+...
T Consensus       213 --~~~a~~~  219 (265)
T d1ouva_         213 --NGGGCFN  219 (265)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              4554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.91  E-value=2e-09  Score=102.33  Aligned_cols=130  Identities=18%  Similarity=0.142  Sum_probs=105.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 040048          271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK  350 (608)
Q Consensus       271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  350 (608)
                      +...+..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048          351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS  406 (608)
Q Consensus       351 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  406 (608)
                      +...+.+......|..      ...++..+..+...|++++|+..+.++.+..|..
T Consensus        83 a~~~~~~~~~~~~p~~------~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          83 FAQGAATAKVLGENEE------LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HTTSCCCEECCCSCHH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHhhhhhcccCchH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            7665554433134443      4455556666667777777777777777665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.88  E-value=1.2e-09  Score=103.86  Aligned_cols=131  Identities=11%  Similarity=0.016  Sum_probs=114.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 040048          460 QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRA  539 (608)
Q Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la  539 (608)
                      .-.+..|++++|+..|+++++.+|++...+.            .+|.+++..|++++|+..|+++++++|++...+..++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~------------~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~   71 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRS------------SFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR   71 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            4456789999999999999999999999987            8999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048          540 ACRSKLGQFEKAIEDCNAALNV-RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV  602 (608)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~  602 (608)
                      .++...+..+++...+.+.... .|.....+...+.++...|++++|...++++.++.|..+..
T Consensus        72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            9988887777766555443333 45566778888999999999999999999999999987643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=2.1e-08  Score=89.13  Aligned_cols=97  Identities=12%  Similarity=0.098  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 040048          498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----------------------SVLLCNRAACRSKLGQFEKAIEDC  555 (608)
Q Consensus       498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~  555 (608)
                      .+.+...|......|++++|+..|.+++.+.+..                      ..++..++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4556789999999999999999999999986643                      257889999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048          556 NAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK  594 (608)
Q Consensus       556 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  594 (608)
                      ++++.++|.+..+|..++.+|..+|++.+|+..|+++.+
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999833

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=3.7e-08  Score=87.58  Aligned_cols=96  Identities=20%  Similarity=0.129  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----------------------hHHHHHHHHHHHcCCHHHHHHHH
Q 040048          264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----------------------SYRSNKTAALIALGRLLEAVFEC  321 (608)
Q Consensus       264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----------------------~~~~~la~~~~~~g~~~eA~~~~  321 (608)
                      .+.+...|..+...|++++|+..|.+|+.+.+...                      .++..++.++...|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46788999999999999999999999999976542                      46789999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048          322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG  359 (608)
Q Consensus       322 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  359 (608)
                      ++++.++|.+..+|..++.+|...|++.+|+..|+++.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=8e-06  Score=65.80  Aligned_cols=74  Identities=8%  Similarity=-0.068  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048          532 SVLLCNRAACRSKLG---QFEKAIEDCNAALNVRPGYS-KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA  605 (608)
Q Consensus       532 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  605 (608)
                      ....++.|+++.+..   +.++|+.+++.++..+|.+. +.++.||..|.++|+|++|..+++++++++|+|..+...
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            678888898888765   45689999999998888764 788999999999999999999999999999999887643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=1.5e-05  Score=64.22  Aligned_cols=81  Identities=7%  Similarity=-0.112  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048          262 MDPETLKIMGNEDYKA---GNFAEALALYDAAISIDPNKA-SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR  337 (608)
Q Consensus       262 ~~~~~~~~lg~~~~~~---g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  337 (608)
                      ..+++.|..|.++.+.   .+..+|+.+|+.++..+|.+. ++++.+|.+|+.+|+|++|+.+++++++++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            4578899999999865   455689999999999988764 789999999999999999999999999999999888766


Q ss_pred             HHHHH
Q 040048          338 LANLY  342 (608)
Q Consensus       338 la~~~  342 (608)
                      .-.+.
T Consensus       113 ~~~Ie  117 (124)
T d2pqrb1         113 KSMVE  117 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.08  E-value=3.7e-05  Score=63.89  Aligned_cols=112  Identities=10%  Similarity=-0.054  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-
Q 040048          466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK-  544 (608)
Q Consensus       466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-  544 (608)
                      .++++|+.+|+++.+..  +.....            .+|.  ....++++|+.+|+++.+.  .++.+.+.||.+|.. 
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~------------~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g   68 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCL------------SLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENG   68 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHH------------HHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhh------------hhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhc
Confidence            37899999999998764  333332            4443  4567899999999999876  678999999999987 


Q ss_pred             ---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 040048          545 ---LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAP  597 (608)
Q Consensus       545 ---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P  597 (608)
                         ..++++|+++|+++.+.  .++.+.+.||.+|..    ..++++|+.+|+++.+...
T Consensus        69 ~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          69 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence               56799999999999876  578999999999988    5689999999999998754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.55  E-value=0.00038  Score=57.45  Aligned_cols=103  Identities=10%  Similarity=-0.075  Sum_probs=82.4

Q ss_pred             hHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 040048          252 TSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVFECREAIRI  327 (608)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~  327 (608)
                      ..+++......++.+.+.+|.  ....++++|+.+|+++.+.  +++.+.+.+|.+|..    ..++++|+.+|+++.+.
T Consensus        13 ~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          13 IQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   88 (133)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc
Confidence            333444334456667777764  3467899999999999875  578999999999987    56799999999999875


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCC
Q 040048          328 EPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGP  360 (608)
Q Consensus       328 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  360 (608)
                        .++.+.+.||.+|..    ..++++|+.+|+++.+
T Consensus        89 --g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          89 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             --CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence              578999999999987    5689999999999865

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.015  Score=58.37  Aligned_cols=276  Identities=11%  Similarity=-0.057  Sum_probs=144.4

Q ss_pred             HHHHHhcCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC--
Q 040048          287 YDAAISIDPNKASYRSNK---TAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE--  361 (608)
Q Consensus       287 ~~~al~~~p~~~~~~~~l---a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--  361 (608)
                      +...|+..|+.+......   -..+...+++.+.+..+    ...|.+....+.++.+....|+..+|...+..+-..  
T Consensus        58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~  133 (450)
T d1qsaa1          58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK  133 (450)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            344556677776543222   33445566666544433    345667777777777788888887777776655321  


Q ss_pred             CCchhHHHHH---------HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048          362 ADQVDIAKAK---------SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK  432 (608)
Q Consensus       362 ~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~  432 (608)
                      ..|.......         ....+..........+++..|...+.    .-+............+..   +.........
T Consensus       134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~----~l~~~~~~~~~a~~~l~~---~p~~~~~~~~  206 (450)
T d1qsaa1         134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAG----QMPADYQTIASAIISLAN---NPNTVLTFAR  206 (450)
T ss_dssp             CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHH----TCCGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHh----hCChhHHHHHHHHHHHHh---ChHhHHHHHh
Confidence            1222111000         01112222333333344443333222    111111111111111111   1111122221


Q ss_pred             cCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 040048          433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA  512 (608)
Q Consensus       433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g  512 (608)
                      .... .+.           ...+...+.......+.+.|...+.......+.....+...        ...++..+...+
T Consensus       207 ~~~~-~~~-----------~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~  266 (450)
T d1qsaa1         207 TTGA-TDF-----------TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQEL--------RDIVAWRLMGND  266 (450)
T ss_dssp             HSCC-CHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHH--------HHHHHHTSCSTT
T ss_pred             cCCC-Chh-----------hhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHH--------HHHHHHHHHHcC
Confidence            1111 111           22233444455556688888888888777666555443311        123444445567


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          513 KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       513 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                      ..+.|...+........+.......++ .....+++..+...+...-......+...|.+|..+..+|+.++|...|..+
T Consensus       267 ~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~  345 (450)
T d1qsaa1         267 VTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL  345 (450)
T ss_dssp             CCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            778888887777665544443333444 4556788888888887653333345778899999999999999999999988


Q ss_pred             HH
Q 040048          593 KK  594 (608)
Q Consensus       593 l~  594 (608)
                      ..
T Consensus       346 a~  347 (450)
T d1qsaa1         346 MQ  347 (450)
T ss_dssp             HT
T ss_pred             hc
Confidence            75

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=0.049  Score=51.76  Aligned_cols=275  Identities=15%  Similarity=0.081  Sum_probs=151.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048          263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY  342 (608)
Q Consensus       263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~  342 (608)
                      +.--.-..|..++..|.|+.|..+|...        .-+-.+..++..+++++.|.+.+.++     +....|..+...+
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l   79 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC   79 (336)
T ss_dssp             ----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHH
Confidence            3334456788889999999999999742        23455667888999999999988776     4678898888888


Q ss_pred             HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048          343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH  422 (608)
Q Consensus       343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g  422 (608)
                      ....+..-|.-+ ...+. ..++.         .......+...|.++..+..++..+...+.+ ..++..++.+|.+.+
T Consensus        80 ~~~~e~~la~i~-~~~~~-~~~d~---------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~-~~~~~~L~~lyak~~  147 (336)
T d1b89a_          80 VDGKEFRLAQMC-GLHIV-VHADE---------LEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK  147 (336)
T ss_dssp             HHTTCHHHHHHT-TTTTT-TCHHH---------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-HHHHHHHHHHHHTTC
T ss_pred             HhCcHHHHHHHH-HHHhh-cCHHH---------HHHHHHHHHHcCChHHHHHHHHHHHcCCccc-hHHHHHHHHHHHHhC
Confidence            888777655322 11122 33333         2234455667789999999999988775555 456777787776654


Q ss_pred             ChHHHHHHhhc-CCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048          423 KHQEADETLKN-GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA  501 (608)
Q Consensus       423 ~~~eA~~~l~~-al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  501 (608)
                       .++-++.++. ....++........   ....|-.+..+|.+.|++++|+..+-.   ..++.....            
T Consensus       148 -~~kl~e~l~~~s~~y~~~k~~~~c~---~~~l~~elv~Ly~~~~~~~~A~~~~i~---~~~~~~~~~------------  208 (336)
T d1b89a_         148 -PQKMREHLELFWSRVNIPKVLRAAE---QAHLWAELVFLYDKYEEYDNAIITMMN---HPTDAWKEG------------  208 (336)
T ss_dssp             -HHHHHHHHHHHSTTSCHHHHHHHHH---TTTCHHHHHHHHHHTTCHHHHHHHHHH---STTTTCCHH------------
T ss_pred             -hHHHHHHHHhccccCCHHHHHHHHH---HcCChHHHHHHHHhcCCHHHHHHHHHH---cchhhhhHH------------
Confidence             4555555554 23333221110000   123345577788888898888766533   111111111            


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048          502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVL----------LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR  571 (608)
Q Consensus       502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  571 (608)
                       ..-.++.+..+.+..-+...-.++..|....-          ...+-....+.+++.-...+++....  .+.......
T Consensus       209 -~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn~a  285 (336)
T d1b89a_         209 -QFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNES  285 (336)
T ss_dssp             -HHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHH
T ss_pred             -HHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHHHH
Confidence             11133334444443333333333333332111          11233344556666666666666544  345678889


Q ss_pred             HHHHHHHcCCHHH
Q 040048          572 RADCFAKIEKWEA  584 (608)
Q Consensus       572 la~~~~~~g~~~~  584 (608)
                      ++.+|...++++.
T Consensus       286 l~~lyie~~d~~~  298 (336)
T d1b89a_         286 LNNLFITEEDYQA  298 (336)
T ss_dssp             HHHHHHHTTCHHH
T ss_pred             HHHHHhCcchhHH
Confidence            9999999999754

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.21  Score=49.47  Aligned_cols=183  Identities=11%  Similarity=0.002  Sum_probs=111.4

Q ss_pred             HhhcHHHHHHHHHHHHHcCCCChHHHHHHH---HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHH
Q 040048          385 RTRDWNTLIQETRAAIAGGADSAPQIYALQ---AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQV  461 (608)
Q Consensus       385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~l---a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~  461 (608)
                      ...+.+.+...+.......+..........   +..+...+..+.+...+........+           ......++..
T Consensus       226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~w~~~~  294 (450)
T d1qsaa1         226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-----------TSLIERRVRM  294 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-----------HHHHHHHHHH
T ss_pred             hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-----------hHHHHHHHHH
Confidence            345666777766666554444433333222   22233345566666666554433322           2333333334


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------------
Q 040048          462 NLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-------------  528 (608)
Q Consensus       462 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------------  528 (608)
                      .+..+++..+...+...-. .+....-+           .+-+|..+...|+.++|..+|..+....             
T Consensus       295 al~~~~~~~~~~~~~~l~~-~~~~~~r~-----------~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~  362 (450)
T d1qsaa1         295 ALGTGDRRGLNTWLARLPM-EAKEKDEW-----------RYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGE  362 (450)
T ss_dssp             HHHHTCHHHHHHHHHHSCT-TGGGSHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTC
T ss_pred             HHHcCChHHHHHHHHhcCc-ccccHHHH-----------HHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCC
Confidence            5566788777777654321 11111111           2477888888888888888887765420             


Q ss_pred             ------------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048          529 ------------PYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL  592 (608)
Q Consensus       529 ------------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  592 (608)
                                  +..   ...-...+..+...|+...|...+..++..  .++.-...+|.+..+.|.++.|+....++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         363 EYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence                        001   112335678888999999999999888754  34677788899999999999999877765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.83  E-value=0.075  Score=50.39  Aligned_cols=260  Identities=11%  Similarity=0.040  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 040048          301 RSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC  380 (608)
Q Consensus       301 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~  380 (608)
                      .-..|..+...|.|+.|...|...-        -+-.+..++..+++++.|.+.+.+.-.            ...|....
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~~~------------~~~~k~~~   76 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKANS------------TRTWKEVC   76 (336)
T ss_dssp             ------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHHTC------------HHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHcCC------------HHHHHHHH
Confidence            3456778888999999999997541        244566788889999999999888643            34445555


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH
Q 040048          381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ  460 (608)
Q Consensus       381 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~  460 (608)
                      ..........-+.     ++....-..+.-.......|...|.+++.+.+++.++...+.+          ...+..++.
T Consensus        77 ~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~----------~~~~~~L~~  141 (336)
T d1b89a_          77 FACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH----------MGMFTELAI  141 (336)
T ss_dssp             HHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC----------HHHHHHHHH
T ss_pred             HHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccc----------hHHHHHHHH
Confidence            5555444443321     1111111223444556788889999999999999988775553          677788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 040048          461 VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAA  540 (608)
Q Consensus       461 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~  540 (608)
                      +|.+. +.++-++.++..    .+....-..+..+.....|..+..+|.+.|++++|+...-.-    |.+++-....-.
T Consensus       142 lyak~-~~~kl~e~l~~~----s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~----~~~~~~~~~f~e  212 (336)
T d1b89a_         142 LYSKF-KPQKMREHLELF----WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH----PTDAWKEGQFKD  212 (336)
T ss_dssp             HHHTT-CHHHHHHHHHHH----STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS----TTTTCCHHHHHH
T ss_pred             HHHHh-ChHHHHHHHHhc----cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc----chhhhhHHHHHH
Confidence            77664 345545544332    122222222223333333446677888888888887665432    111111222233


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048          541 CRSKLGQFEKAIEDCNAALNVRPGYSKAR----------LRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL  606 (608)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~----------~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L  606 (608)
                      ++.+..+.+...+...-.++..|+.....          ..+-....+.+++.-...+++.....  ++..+..+|
T Consensus       213 ~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~--n~~~vn~al  286 (336)
T d1b89a_         213 IITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESL  286 (336)
T ss_dssp             HHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHH
T ss_pred             HHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc--ChHHHHHHH
Confidence            34444554444444444444444432111          23334445566666666666665442  234455444

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.90  E-value=4.8  Score=34.98  Aligned_cols=177  Identities=14%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             HHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-cCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048          376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK-LHKHQEADETLKNGPNFDVDETTRFFGPIGNANL  454 (608)
Q Consensus       376 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~  454 (608)
                      +..++.+..+.++|++.+....++++.++.....-..++..+|-. .|....+...+...........       .....
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~~-------~~~~~   78 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAE-------KKQQM   78 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CHHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCcc-------hhhHH
Confidence            556778888889999999999999999998887777777777654 3555555554443221111100       00111


Q ss_pred             H-HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHhhc---
Q 040048          455 L-VVRAQVNLA-CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK---QAKFSEAAAAYGDGLG---  526 (608)
Q Consensus       455 ~-~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~---  526 (608)
                      . ...-.+-.. ..-..+.+..+...+--...+.+....+.+.+ .+-++.++.+...   ..-.+.|...|++|++   
T Consensus        79 i~~yk~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~Kmk-gDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~  157 (230)
T d2o02a1          79 AREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMK-GDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISK  157 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhc-ccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 001111000 01123334444433333334444433222211 2222222222111   1112457777777664   


Q ss_pred             --CCCCCHH---HHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 040048          527 --LDPYNSV---LLCNRAACRS-KLGQFEKAIEDCNAALN  560 (608)
Q Consensus       527 --~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~  560 (608)
                        +.|.+|.   +..+.+..++ .+|+.++|++..++++.
T Consensus       158 ~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         158 KEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             hcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              3565653   3344454444 47888888877777664